<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:40:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230648" ref_strand="+" ref_description="SGN-E230648 [cLEL-35-A2](-)">
      <seq>tggtggggctgtggttgtgtactgtccgcatggaacttcacaagtaaagcagctggaggacgcatctcacaaacctggtttctcttttcaaccaattaaaggtatgccttcgtttttcaacgaaactggtcgtcaaactctgaaatcaaagtgaaaatgatgatctgctttcaaatatgtcgagagtcctctttattctttatctctttcacctttcattggcatatgctaagcgcttttcaccaagtatgtagcgaccattgaaagaaatgctagtatagatagttttagttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="1085" stop="189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="785" g_stop="490" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="489" i_stop="205" i_length="285">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.215" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="204" g_stop="191" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="310" r_length="14" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E230648" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="785" e_stop="490"/>
          <exon e_start="204" e_stop="191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTAGCTTGCTGTAGTTGTTGGTAAATTGCCGACAAAAATTTCCCTTTTTAGTGGAAAATGAAATGTTTGATTTCATTATTGCCATAAAATATTGAAGGTTTAGCGACAATTGTTGAAATTAACACTACATATTCAGGGCAAATATATACCAGACAAAATAGAACAA</genome_strand>
        <mrna_strand>TGGTGGGGCTGTGGTTGTGTACTGTCCGCATGGAACTTCACAAGTAAAGCAGCTGGAGGACGCATCTCACAAACCTGGTTTCTCTTTTCAACCAATTAAAGGTATGCCTTCGTTTTTCAACGAAACTGGTCGTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATCTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTAAA.............................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377850" ref_strand="-" ref_description="SGN-E377850 [TUS-21-L15](-)">
      <seq>ctgaatacaattttgacttgagaaggcgtatgtttggagataatgcccttggagctatgaatatagagatggttgaaatcgctcgaaaggtaggtgctgcttccaagttcacaggaagtggtggggctgtggttgtgtactgtccggatggaacttcacaagtgaagcagctggaggacgcatgccacaaagctggtttcacttttcaaccaattaaagttatgccttcgtttctaaacgaaactgatcttcaaactctgaaatcaaagtgaaaatgatgatctgctttcaaatatgtcgagagtcctctttattctttatttctttcacctttcattggcatatgctaagcgcttttcaccaagtatgtagcgaccattgaaagaaatgctagtatagatagttttagttacaattgttttgctgctattgtaatgcatttcgagaagcgcttactttacagttttagcgtaaaccgtcattagattcacatattttaactccaattgtgtgatgccaattataattactactaaatctgttacttctaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="1939" stop="54"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1640" g_stop="1615" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="878" g_stop="354" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="550" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="574"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E377850" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377850" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1640" e_stop="1615"/>
          <exon e_start="878" e_stop="354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATCACAATTTTGACTTGAGAAGGTAATATACATGCTTAGTTTAATGAGGGTTACATTTGTTAATATCTTTTATGTGCTTCGTGGCGTCCCCAACACCTATTTGATAGTGTCATGTGTCATGACCTGCCACCTTACCCTTCAAATTTTGCACTGGAAGAGGGGACGAAGAACCTAAAGTTGTGGAGAGGTCAGTGGAAGACTCTAGAATAACTTAGAAGATATCGTAGAAAGCTTTAGAATTCTCTAGACTAGTAGAGAATTCTAGAGCATGGACTAAAGTATAAATAAGAGTGATATGTGAAGTAAATATTATTTACTAGGTCCTAGGAAGTAGTATAAATAGAAGGGTCTCTCATTTGGAAGGCTTCCAAGAAGCAAGCAATCACTCAAGTTGTAAATAATGTTTCGAGCAATACAAAACCTTCTTATAAAACTCTCTTGTCTTTCTTTTCATTCTCTTAGCGACCTTAAGTGTAAATGACTTACTTGAGCTTACAAGACCTTGAAAGATTAGTGAGTAAGTAGTCGAGTGCTGGCTTTAGTGAGACTCTCTTAGTCCATGACAATATCATGACCCATTTGTTTTCATGTTATTACTTGTAACAATTTCATGTGCTGTCACAATGCACTTTTACCTCCCTTTTGCATCTTATTTCATGGTGTTATGATATACTCAAATATTGCTAAGATTTTATCACAGAAAGCAGGTAATATGATATGCAAATGGAATACTTTAATATTGTGGGTCTACTATGTAGGCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</genome_strand>
        <mrna_strand>CTGAAT-ACAATTTTGACTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377851" ref_strand="-" ref_description="SGN-E377851 [TUS-21-L15]">
      <seq>gaatcacaattttgacttgagaaggcgtatgtttggagataatgcccttggagctatgaatatagagatggttgaaatcgctcgaaaggtaggtgctgcttccaagttcacaggaagtggtggggctgtggttgtgtactgtccggatggaacttcacaagtgaagcagctggaggacgcatgccacaaagctggtttcacttttcaaccaattaaagttatgccttcgtttctaaacgaaactgatcttcaaactctgaaatcaaagtgaaaatgatgatctgctttcaaatatgtcgagagtcctctttattctttatttctttcacctttcattggcatatgctaagcgcttttcaccaagtatgtagcgaccattgaaagaaatgctagtatagatagttttagttacaattgttttgctgctattgtaatgcatttcgagaagcgcttactttacagttttagcgtaaaccgtcattagattcacatattttaactccaattgtgtgatgccaattataattactactaaatctgttacttctaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="1938" stop="54"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1638" g_stop="1615" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="878" g_stop="354" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="549" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="573"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E377851" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377851" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1638" e_stop="1615"/>
          <exon e_start="878" e_stop="354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCACAATTTTGACTTGAGAAGGTAATATACATGCTTAGTTTAATGAGGGTTACATTTGTTAATATCTTTTATGTGCTTCGTGGCGTCCCCAACACCTATTTGATAGTGTCATGTGTCATGACCTGCCACCTTACCCTTCAAATTTTGCACTGGAAGAGGGGACGAAGAACCTAAAGTTGTGGAGAGGTCAGTGGAAGACTCTAGAATAACTTAGAAGATATCGTAGAAAGCTTTAGAATTCTCTAGACTAGTAGAGAATTCTAGAGCATGGACTAAAGTATAAATAAGAGTGATATGTGAAGTAAATATTATTTACTAGGTCCTAGGAAGTAGTATAAATAGAAGGGTCTCTCATTTGGAAGGCTTCCAAGAAGCAAGCAATCACTCAAGTTGTAAATAATGTTTCGAGCAATACAAAACCTTCTTATAAAACTCTCTTGTCTTTCTTTTCATTCTCTTAGCGACCTTAAGTGTAAATGACTTACTTGAGCTTACAAGACCTTGAAAGATTAGTGAGTAAGTAGTCGAGTGCTGGCTTTAGTGAGACTCTCTTAGTCCATGACAATATCATGACCCATTTGTTTTCATGTTATTACTTGTAACAATTTCATGTGCTGTCACAATGCACTTTTACCTCCCTTTTGCATCTTATTTCATGGTGTTATGATATACTCAAATATTGCTAAGATTTTATCACAGAAAGCAGGTAATATGATATGCAAATGGAATACTTTAATATTGTGGGTCTACTATGTAGGCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</genome_strand>
        <mrna_strand>GAATCACAATTTTGACTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378127" ref_strand="-" ref_description="SGN-E378127 [TUS-21-L6]">
      <seq>gaatcacaattttgacttgagaaggcgtatgtttggagataatgcccttggagctatgaatatagagatggttgaaatcgctcgaaaggtaggtgctgcttccaagttcacaggaagtggtggggctgtggttgtgtactgtccggatggaacttcacaagtgaagcagctggaggacgcatgccacaaagctggtttcacttttcaaccaattaaagttatgccttcgtttctaaacgaaactgatcttcaaactctgaaatcaaagtgaaaatgatgatctgctttcaaatatgtcgagagtcctctttattctttatttctttcacctttcattggcatatgctaagcgcttttcaccaagtatgtagcgaccattgaaagaaatgctagtatagatagttttagttacaattgttttgctgctattgtaatgcatttcgagaagcgcttactttacagttttagcgtaaaccgtcattagattcacatattttaactccaattgtgtgatgccaattataattactactaaatctgttacttctaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="1938" stop="54"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1638" g_stop="1615" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="878" g_stop="354" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="549" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="573"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E378127" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378127" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1638" e_stop="1615"/>
          <exon e_start="878" e_stop="354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCACAATTTTGACTTGAGAAGGTAATATACATGCTTAGTTTAATGAGGGTTACATTTGTTAATATCTTTTATGTGCTTCGTGGCGTCCCCAACACCTATTTGATAGTGTCATGTGTCATGACCTGCCACCTTACCCTTCAAATTTTGCACTGGAAGAGGGGACGAAGAACCTAAAGTTGTGGAGAGGTCAGTGGAAGACTCTAGAATAACTTAGAAGATATCGTAGAAAGCTTTAGAATTCTCTAGACTAGTAGAGAATTCTAGAGCATGGACTAAAGTATAAATAAGAGTGATATGTGAAGTAAATATTATTTACTAGGTCCTAGGAAGTAGTATAAATAGAAGGGTCTCTCATTTGGAAGGCTTCCAAGAAGCAAGCAATCACTCAAGTTGTAAATAATGTTTCGAGCAATACAAAACCTTCTTATAAAACTCTCTTGTCTTTCTTTTCATTCTCTTAGCGACCTTAAGTGTAAATGACTTACTTGAGCTTACAAGACCTTGAAAGATTAGTGAGTAAGTAGTCGAGTGCTGGCTTTAGTGAGACTCTCTTAGTCCATGACAATATCATGACCCATTTGTTTTCATGTTATTACTTGTAACAATTTCATGTGCTGTCACAATGCACTTTTACCTCCCTTTTGCATCTTATTTCATGGTGTTATGATATACTCAAATATTGCTAAGATTTTATCACAGAAAGCAGGTAATATGATATGCAAATGGAATACTTTAATATTGTGGGTCTACTATGTAGGCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</genome_strand>
        <mrna_strand>GAATCACAATTTTGACTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378126" ref_strand="-" ref_description="SGN-E378126 [TUS-21-L6](-)">
      <seq>aatacaattttgacttgagaaggcgtatgtttggagataatgcccttggagctatgaatatagagatggttgaaatcgctcgaaaggtaggtgctgcttccaagttcacaggaagtggtggggctgtggttgtgtactgtccggatggaacttcacaagtgaagcagctggaggacgcatgccacaaagctggtttcacttttcaaccaattaaagttatgccttcgtttctaaacgaaactgatcttcaaactctgaaatcaaagtgaaaatgatgatctgctttcaaatatgtcgagagtcctctttattctttatttctttcacctttcattggcatatgctaagcgcttttcaccaagtatgtagcgaccattgaaagaaatgctagtatagatagttttagttacaattgttttgctgctattgtaatgcatttcgagaagcgcttactttacagttttagcgtaaaccgtcattagattcacatattttaactccaattgtgtgatgccaattataattactactaaatctgttacttctaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="1937" stop="54"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1637" g_stop="1615" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="878" g_stop="354" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="547" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="548" polyA_stop="571"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E378126" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378126" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1637" e_stop="1615"/>
          <exon e_start="878" e_stop="354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACAATTTTGACTTGAGAAGGTAATATACATGCTTAGTTTAATGAGGGTTACATTTGTTAATATCTTTTATGTGCTTCGTGGCGTCCCCAACACCTATTTGATAGTGTCATGTGTCATGACCTGCCACCTTACCCTTCAAATTTTGCACTGGAAGAGGGGACGAAGAACCTAAAGTTGTGGAGAGGTCAGTGGAAGACTCTAGAATAACTTAGAAGATATCGTAGAAAGCTTTAGAATTCTCTAGACTAGTAGAGAATTCTAGAGCATGGACTAAAGTATAAATAAGAGTGATATGTGAAGTAAATATTATTTACTAGGTCCTAGGAAGTAGTATAAATAGAAGGGTCTCTCATTTGGAAGGCTTCCAAGAAGCAAGCAATCACTCAAGTTGTAAATAATGTTTCGAGCAATACAAAACCTTCTTATAAAACTCTCTTGTCTTTCTTTTCATTCTCTTAGCGACCTTAAGTGTAAATGACTTACTTGAGCTTACAAGACCTTGAAAGATTAGTGAGTAAGTAGTCGAGTGCTGGCTTTAGTGAGACTCTCTTAGTCCATGACAATATCATGACCCATTTGTTTTCATGTTATTACTTGTAACAATTTCATGTGCTGTCACAATGCACTTTTACCTCCCTTTTGCATCTTATTTCATGGTGTTATGATATACTCAAATATTGCTAAGATTTTATCACAGAAAGCAGGTAATATGATATGCAAATGGAATACTTTAATATTGTGGGTCTACTATGTAGGCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</genome_strand>
        <mrna_strand>AAT-ACAATTTTGACTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238253" ref_strand="-" ref_description="SGN-E238253 [cLED-22-D6]">
      <seq>gcgtatgtttggagataatgcccttggagctatgaatatagagatggttgaaatcgctcgaaaggtaggtgctgcttccaagttcacaggaagtggtggggctgtggttgtgtactgtccggatggaacttcacaagtgaagcagctggaggacgcatgccacaaagctggtttcacttttcaaccaattaaagttatgccttcgtttctaaacgaaactgatcttcaaactctgaaatcaaagtgaaaatgatgatctgctttcaaatatgtcgagagtcctctttattctttatttctttcacctttcattggcatatgctaagcgcttttcaccaagtatgtagcgaccattgaaagaaatgctagtatagatagttttagttacaattgttttgctgctattgtaatgcatttcgagaagcgcttactttacagttttagcgtaaaccgtcattagattcacatattttaactccaattgtgtgatgccaattataattactactaaatctgttacttctaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="1178" stop="54"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="878" g_stop="354" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="526" polyA_stop="549"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E238253" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238253" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="878" e_stop="354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</genome_strand>
        <mrna_strand>GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235301" ref_strand="-" ref_description="SGN-E235301 [cLED-11-C22]">
      <seq>cttccaagttcacaggaagtggtggggctgtggttgtgtactgtccggatggaacttcacaagtgaagcagctggaggacgcatgccacaaagctggtttcacttttcaaccaattaaagttatgccttcgtttctaaacgaaactgatcttcaaactctgaaatcaaagtgaaaatgatgatctgctttcaaatatgtcgagagtcctctttattctttatttctttcacctttcattggcatatgctaagcgcttttcaccaagtatgtagcgaccattgaaagaaatgctagtatagatagttttagttacaattgttttgctgctattgtaatgcatttcgagaagcgcttactttacagttttagcgtaaaccgtcattagattcacatattttaactccaattgtgtgatgccaattataattactactaaatctgttacttctaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="1104" stop="54"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="804" g_stop="354" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="475"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E235301" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235301" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="804" e_stop="354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</genome_strand>
        <mrna_strand>CTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241649" ref_strand="+" ref_description="SGN-E241649 [cLED-36-P17]">
      <seq>tggttagatggtgataaatttataagatcaaccattgaagaggttgcaaatatagctgtggagggacggaaagctcttcttgagaaggactacaataagttagcagccctcatgaatcacaattttgacttgagaaggcgtatgtttggagataatgcccttggagctatgaatatagagatggttgaaatcgctcgaaaggtaggtgctgcttccaagttcacaggaagtggtggggctgtggttgtgtactgtccggatggaacttcacaagtgaagcagctggaggacgcatgccacaaagctggtttcacttttcaaccaattaaagttatgccttcgtttctaaacgaaactgatcttcaaactctgaaatcaaagtgaaaatgatgatctgctttcaaatatgtcgagagtcctctttattctttatttctttcacctttcattggcatatgctaagcgcttttcaccaagtatgtagcgaccattgaaagaaatgctagtatagatagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="2051" stop="197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1751" g_stop="1615" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="878" g_stop="497" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="519" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E241649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1751" e_stop="1615"/>
          <exon e_start="878" e_stop="497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAGGTAATATACATGCTTAGTTTAATGAGGGTTACATTTGTTAATATCTTTTATGTGCTTCGTGGCGTCCCCAACACCTATTTGATAGTGTCATGTGTCATGACCTGCCACCTTACCCTTCAAATTTTGCACTGGAAGAGGGGACGAAGAACCTAAAGTTGTGGAGAGGTCAGTGGAAGACTCTAGAATAACTTAGAAGATATCGTAGAAAGCTTTAGAATTCTCTAGACTAGTAGAGAATTCTAGAGCATGGACTAAAGTATAAATAAGAGTGATATGTGAAGTAAATATTATTTACTAGGTCCTAGGAAGTAGTATAAATAGAAGGGTCTCTCATTTGGAAGGCTTCCAAGAAGCAAGCAATCACTCAAGTTGTAAATAATGTTTCGAGCAATACAAAACCTTCTTATAAAACTCTCTTGTCTTTCTTTTCATTCTCTTAGCGACCTTAAGTGTAAATGACTTACTTGAGCTTACAAGACCTTGAAAGATTAGTGAGTAAGTAGTCGAGTGCTGGCTTTAGTGAGACTCTCTTAGTCCATGACAATATCATGACCCATTTGTTTTCATGTTATTACTTGTAACAATTTCATGTGCTGTCACAATGCACTTTTACCTCCCTTTTGCATCTTATTTCATGGTGTTATGATATACTCAAATATTGCTAAGATTTTATCACAGAAAGCAGGTAATATGATATGCAAATGGAATACTTTAATATTGTGGGTCTACTATGTAGGCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTT</genome_strand>
        <mrna_strand>TGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240760" ref_strand="+" ref_description="SGN-E240760 [cLED-24-E6]">
      <seq>tggttagatggtgataaatttataagatcaaccattgaagaggttgcaaatatagctgtggagggacggaaagctcttcttgagaaggactacaataagttagcagccctcatgaatcacaattttgacttgagaaggcgtatgtttggagataatgcccttggagctatgaatatagagatggttgaaatcgctcgaaaggtaggtgctgcttccaagttcacaggaagtggtggggctgtggttgtgtactgtccggatggaacttcacaagtgaagcagctggaggacgcatgccacaaagctggtttcacttttcaaccaattaaagttatgccttcgtttctaaacgaaactgatcttcaaactctgaaatcaaagtgaaaatgatgatctgctttcaaatatgtcgagagtcctctttattctttatttctttcacctttcattggcatatgctaagcgcttttcaccaagtatgtagcgaccattgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="2051" stop="219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1751" g_stop="1615" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="878" g_stop="519" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="497" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E240760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1751" e_stop="1615"/>
          <exon e_start="878" e_stop="519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAGGTAATATACATGCTTAGTTTAATGAGGGTTACATTTGTTAATATCTTTTATGTGCTTCGTGGCGTCCCCAACACCTATTTGATAGTGTCATGTGTCATGACCTGCCACCTTACCCTTCAAATTTTGCACTGGAAGAGGGGACGAAGAACCTAAAGTTGTGGAGAGGTCAGTGGAAGACTCTAGAATAACTTAGAAGATATCGTAGAAAGCTTTAGAATTCTCTAGACTAGTAGAGAATTCTAGAGCATGGACTAAAGTATAAATAAGAGTGATATGTGAAGTAAATATTATTTACTAGGTCCTAGGAAGTAGTATAAATAGAAGGGTCTCTCATTTGGAAGGCTTCCAAGAAGCAAGCAATCACTCAAGTTGTAAATAATGTTTCGAGCAATACAAAACCTTCTTATAAAACTCTCTTGTCTTTCTTTTCATTCTCTTAGCGACCTTAAGTGTAAATGACTTACTTGAGCTTACAAGACCTTGAAAGATTAGTGAGTAAGTAGTCGAGTGCTGGCTTTAGTGAGACTCTCTTAGTCCATGACAATATCATGACCCATTTGTTTTCATGTTATTACTTGTAACAATTTCATGTGCTGTCACAATGCACTTTTACCTCCCTTTTGCATCTTATTTCATGGTGTTATGATATACTCAAATATTGCTAAGATTTTATCACAGAAAGCAGGTAATATGATATGCAAATGGAATACTTTAATATTGTGGGTCTACTATGTAGGCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAG</genome_strand>
        <mrna_strand>TGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236503" ref_strand="+" ref_description="SGN-E236503 [cLED-13-A3]">
      <seq>gatgatacttttttttcaaatgcaggtacatagtgcagttcgacaaagatggttagatggtgataaatttataagatcaaccattgaagaggttgcacatatacctgtggagggacggaaagctcttcttgagaaggactacaattagttagcagccctcatgaatcacaattttgacttgagaaggcgtatgtttggagataatgcccttggagctatgaatatagagatggttgaaatcgctcgaaaggtaggtgctgcttccaagttcacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="2100" stop="489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1800" g_stop="1615" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="878" g_stop="789" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="276" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E236503" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1800" e_stop="1615"/>
          <exon e_start="878" e_stop="789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATACTTTTTTTTCAAATGCAGGTACATAGTACAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAGGTAATATACATGCTTAGTTTAATGAGGGTTACATTTGTTAATATCTTTTATGTGCTTCGTGGCGTCCCCAACACCTATTTGATAGTGTCATGTGTCATGACCTGCCACCTTACCCTTCAAATTTTGCACTGGAAGAGGGGACGAAGAACCTAAAGTTGTGGAGAGGTCAGTGGAAGACTCTAGAATAACTTAGAAGATATCGTAGAAAGCTTTAGAATTCTCTAGACTAGTAGAGAATTCTAGAGCATGGACTAAAGTATAAATAAGAGTGATATGTGAAGTAAATATTATTTACTAGGTCCTAGGAAGTAGTATAAATAGAAGGGTCTCTCATTTGGAAGGCTTCCAAGAAGCAAGCAATCACTCAAGTTGTAAATAATGTTTCGAGCAATACAAAACCTTCTTATAAAACTCTCTTGTCTTTCTTTTCATTCTCTTAGCGACCTTAAGTGTAAATGACTTACTTGAGCTTACAAGACCTTGAAAGATTAGTGAGTAAGTAGTCGAGTGCTGGCTTTAGTGAGACTCTCTTAGTCCATGACAATATCATGACCCATTTGTTTTCATGTTATTACTTGTAACAATTTCATGTGCTGTCACAATGCACTTTTACCTCCCTTTTGCATCTTATTTCATGGTGTTATGATATACTCAAATATTGCTAAGATTTTATCACAGAAAGCAGGTAATATGATATGCAAATGGAATACTTTAATATTGTGGGTCTACTATGTAGGCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGG</genome_strand>
        <mrna_strand>GATGATACTTTTTTTTCAAATGCAGGTACATAGTGCAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCACATATACCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATTAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257264" ref_strand="+" ref_description="SGN-E257264 [cLEG-46-M19]">
      <seq>gcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccaggtgtatggaggcgttgtatatatggactttgacaagaatcacatggatgaattaggtcatggcatatatacacccatggatgttgatcttctcccacctctttatctgatctatgcagaaaatcccagtgattctggaaaggtacatagtacagttcgacaaagatggttagatggtgataaatttataagatcaaccattgaagaggttgcaaatatagctgtggagggacggaaagctcttcttgagaaggactacaataagttagcagccctcatgaatcacaattttgacttgagaaggcgtatgtttggagataatgcccttggagctatgaatatagagatggttgaaatcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="2838" stop="521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2538" g_stop="2371" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94">
            <donor d_prob="0.668" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2276" g_stop="2160" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="285" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2159" i_stop="1776" i_length="384">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1775" g_stop="1615" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="446" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="878" g_stop="821" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="504" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E257264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2538" e_stop="2371"/>
          <exon e_start="2276" e_stop="2160"/>
          <exon e_start="1775" e_stop="1615"/>
          <exon e_start="878" e_stop="821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAGGTTTGAACTTAATGTGCAGAATATGAGTGAAAAATCTCTGTTGTCTGGCCAAAGATTCTATAGATGAGTGTTATTTGCTTAGCCATGCAATGGGTTAGAATATTACATTTTGGTTTTCACTTCACACTAAGAATTAGACAACGAGTATTGATGTAGGCTTATAGTCCACGGGGCAGCCCCTTTATTTTCAGTAATTATTTAACAGGGTAACCTCTTATATGATTCCAGTATTTATTGAATATTTTCCAGACAATGGATGACATAACAATTGCAGCAGTTTCTCAAGGAATTGTGAATATCAGTGTCCGGATTAACTTTGTCACTAATAGTTACTTTGTTGACAGTAGTTACAAAATATAGATGATACTTTTTTTTCAAATGCAGGTACATAGTACAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAGGTAATATACATGCTTAGTTTAATGAGGGTTACATTTGTTAATATCTTTTATGTGCTTCGTGGCGTCCCCAACACCTATTTGATAGTGTCATGTGTCATGACCTGCCACCTTACCCTTCAAATTTTGCACTGGAAGAGGGGACGAAGAACCTAAAGTTGTGGAGAGGTCAGTGGAAGACTCTAGAATAACTTAGAAGATATCGTAGAAAGCTTTAGAATTCTCTAGACTAGTAGAGAATTCTAGAGCATGGACTAAAGTATAAATAAGAGTGATATGTGAAGTAAATATTATTTACTAGGTCCTAGGAAGTAGTATAAATAGAAGGGTCTCTCATTTGGAAGGCTTCCAAGAAGCAAGCAATCACTCAAGTTGTAAATAATGTTTCGAGCAATACAAAACCTTCTTATAAAACTCTCTTGTCTTTCTTTTCATTCTCTTAGCGACCTTAAGTGTAAATGACTTACTTGAGCTTACAAGACCTTGAAAGATTAGTGAGTAAGTAGTCGAGTGCTGGCTTTAGTGAGACTCTCTTAGTCCATGACAATATCATGACCCATTTGTTTTCATGTTATTACTTGTAACAATTTCATGTGCTGTCACAATGCACTTTTACCTCCCTTTTGCATCTTATTTCATGGTGTTATGATATACTCAAATATTGCTAAGATTTTATCACAGAAAGCAGGTAATATGATATGCAAATGGAATACTTTAATATTGTGGGTCTACTATGTAGGCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCT</genome_strand>
        <mrna_strand>GCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG..............................................................................................GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAG................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGTACAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258996" ref_strand="+" ref_description="SGN-E258996 [cLEG-41-P12]">
      <seq>tgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccaggtgtatggaggcgttgtatatatggactttgacaagaatcacatggatgaattaggtcatggcatatatacacccatggatgttgatcttctcccacctctttatctgatctatgcagaaaatcccagtgattctggaaaggtacatagtacagttcgacaaagatggttagatggtgataaatttataagatcaaccattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="2806" stop="1414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2506" g_stop="2371" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94">
            <donor d_prob="0.668" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2276" g_stop="2160" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="253" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2159" i_stop="1776" i_length="384">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1775" g_stop="1714" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="315" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E258996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2506" e_stop="2371"/>
          <exon e_start="2276" e_stop="2160"/>
          <exon e_start="1775" e_stop="1714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAGGTTTGAACTTAATGTGCAGAATATGAGTGAAAAATCTCTGTTGTCTGGCCAAAGATTCTATAGATGAGTGTTATTTGCTTAGCCATGCAATGGGTTAGAATATTACATTTTGGTTTTCACTTCACACTAAGAATTAGACAACGAGTATTGATGTAGGCTTATAGTCCACGGGGCAGCCCCTTTATTTTCAGTAATTATTTAACAGGGTAACCTCTTATATGATTCCAGTATTTATTGAATATTTTCCAGACAATGGATGACATAACAATTGCAGCAGTTTCTCAAGGAATTGTGAATATCAGTGTCCGGATTAACTTTGTCACTAATAGTTACTTTGTTGACAGTAGTTACAAAATATAGATGATACTTTTTTTTCAAATGCAGGTACATAGTACAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGA</genome_strand>
        <mrna_strand>TGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG..............................................................................................GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAG................................................................................................................................................................................................................................................................................................................................................................................................GTACATAGTACAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244778" ref_strand="+" ref_description="SGN-E244778 [cLED-38-F14]">
      <seq>gacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccaggtgtatggaggcgttgtatatatggactttgacaagaatcacatggatgaattaggtcatggcatatatacacccatggatgttgatcttctcccacctctttatctgatctatgcagaaaatcccagtgattctggaaaggtttgaacttaatgtgcagaatatgagtgaaaaatctctgttgtctggccaaagattctatagatgagtgttatttgcttagccatgcaatgggttagaatattacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="2860" stop="1749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2560" g_stop="2371" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94">
            <donor d_prob="0.668" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2276" g_stop="2049" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="418" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E244778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2560" e_stop="2371"/>
          <exon e_start="2276" e_stop="2049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAGGTTTGAACTTAATGTGCAGAATATGAGTGAAAAATCTCTGTTGTCTGGCCAAAGATTCTATAGATGAGTGTTATTTGCTTAGCCATGCAATGGGTTAGAATATTACATTTT</genome_strand>
        <mrna_strand>GACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG..............................................................................................GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAGGTTTGAACTTAATGTGCAGAATATGAGTGAAAAATCTCTGTTGTCTGGCCAAAGATTCTATAGATGAGTGTTATTTGCTTAGCCATGCAATGGGTTAGAATATTACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243931" ref_strand="+" ref_description="SGN-E243931 [cLED-35-D6]">
      <seq>gacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccangtgtatggaggcgttgtatatatggactttgacaagaatcacatggatgaattaggtcatggcatatatacacccatggatgttgatcttctcccacctctttatctgatctatgcagaaaatcccagtgattctggaaaggtttgaacttaatgtgcagaatatgagtgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="2860" stop="1825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2560" g_stop="2371" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94">
            <donor d_prob="0.668" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2276" g_stop="2125" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="342" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E243931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2560" e_stop="2371"/>
          <exon e_start="2276" e_stop="2125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAGGTTTGAACTTAATGTGCAGAATATGAGTGAAAAAT</genome_strand>
        <mrna_strand>GACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCANGTGTATGGAGGCGTTGTATATATG..............................................................................................GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAGGTTTGAACTTAATGTGCAGAATATGAGTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346141" ref_strand="+" ref_description="SGN-E346141 [cTOF-34-O23]">
      <seq>tagattccaatttctgcagtaacacctacaataagcaacaatggcggcagtgatcgagcacaagtcttacgctagagttggactgcttggaaaccctagcgatgtttattttgggaacactatatccttcagcctcgggaatttttgggcttctgttcgtttggaaccttctatagatctcgtcattgttcctcatccttctcacgatctcgtccaattcaattcaatttctcacctggtgaacaggttgcagaatgaggggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatttcactctctcgtatgacactaacattccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccaggtgtatggaggcgttgtatatatggactttgacaagaatcacatggatgaattaggtcatggcatatatacacccatggattgttgatcttctcccacctctttatctgatctatgcagaaaatcccagtgattctggaaaggtacatagtacagttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="3997" stop="1858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3697" g_stop="3460" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3193" g_stop="3044" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="388" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2559" g_stop="2371" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="577" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94">
            <donor d_prob="0.668" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2276" g_stop="2160" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="695" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E346141" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3697" e_stop="3460"/>
          <exon e_start="3193" e_stop="3044"/>
          <exon e_start="2559" e_stop="2371"/>
          <exon e_start="2276" e_stop="2160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGA-TGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAG</genome_strand>
        <mrna_strand>TAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG..........................................................................................................................................................................................................................................................................GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG..............................................................................................GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATTGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283277" ref_strand="+" ref_description="SGN-E283277 [cLER-12-C14]">
      <seq>agaatgaggggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatttcactctctcgtatgacactaacattccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccacgtgtatggaggcgttgtatatatggactttgacaagaatcacatggatgaattaggtcatggcatatatacacccatggatgttgatcttctcccacctctttatctgatctatgcagaaaatcccagtgattctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="3480" stop="1861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3180" g_stop="3044" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2559" g_stop="2371" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="326" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94">
            <donor d_prob="0.668" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2276" g_stop="2161" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="442" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E283277" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3180" e_stop="3044"/>
          <exon e_start="2559" e_stop="2371"/>
          <exon e_start="2276" e_stop="2161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAA</genome_strand>
        <mrna_strand>AGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCACGTGTATGGAGGCGTTGTATATATG..............................................................................................GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236222" ref_strand="+" ref_description="SGN-E236222 [cLED-20-H9]">
      <seq>cagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccaggtgtatggaggcgttgtatatatggactttgacaagaatcacatggatgaattaggtcatggcatatatacacccatggatgttgatctttctcccacctctttatctgatctatgcagaaaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="2862" stop="1876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2562" g_stop="2371" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94">
            <donor d_prob="0.668" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2276" g_stop="2176" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="294" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E236222" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2562" e_stop="2371"/>
          <exon e_start="2276" e_stop="2176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATC-TTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCC</genome_strand>
        <mrna_strand>CAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG..............................................................................................GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316813" ref_strand="+" ref_description="SGN-E316813 [cTOB-6-I3]">
      <seq>cttacgctagagttggactgcttggaaaccctagcgatgtttattttgggaacactatatccttcagcctcgggaatttttgggcttctgttcgtttggaaccttctatagatctcgtcattgttcctcatccttctcacgatctcgtccaattcaattcaatttctcacctggtgaacaggttgcagaatgaggggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatttcactctctcgtatgacactaacattccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccaggtgtatggaggcgttgtatatatggactttgacaagaatcacatggatgaattaggtcatggcatatatacacccatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="3932" stop="1920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3632" g_stop="3460" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3193" g_stop="3044" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="323" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2559" g_stop="2371" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="512" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94">
            <donor d_prob="0.668" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2276" g_stop="2220" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="569" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E316813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3632" e_stop="3460"/>
          <exon e_start="3193" e_stop="3044"/>
          <exon e_start="2559" e_stop="2371"/>
          <exon e_start="2276" e_stop="2220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGAT</genome_strand>
        <mrna_strand>CTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG..........................................................................................................................................................................................................................................................................GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG..............................................................................................GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240014" ref_strand="+" ref_description="SGN-E240014 [cLED-29-L18]">
      <seq>tccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccaggtgtatggaggcgttgtatatatggactttgacaagaatcacatggatgaattaggtcatggcatatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="2871" stop="1930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2559" g_stop="2371" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="199" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94">
            <donor d_prob="0.668" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2276" g_stop="2230" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="246" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E240014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2559" e_stop="2371"/>
          <exon e_start="2276" e_stop="2230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATAC</genome_strand>
        <mrna_strand>ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG..............................................................................................GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317736" ref_strand="+" ref_description="SGN-E317736 [cTOA-30-E11]">
      <seq>gattagatctatagattccaatttctgcagtaacacctacaataagcaacaatggcggcagtgatcgagcacaagtcttacgctagagttggactgcttggaaaccctagcgatgtttattttgggaacactatatccttcagcctcgggaatttttgggcttctgttcgtttggaaccttctatagatctcgtcattgttcctcatccttctcacgatctcgtccaattcaattcaatttctcacctgttctatgtggattctcttgcaggttgattgaatttgacttaacacttggctgtaggtgaacaggttgcagaatgaggggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatttcactctctcgtatgacactaacattccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgcagagaaggaacttggaattgttgcaggtcttcaagatagagtggcccaggtgtatgggagcgttgtatatatggactttgancagaatcacatggatgaattangtcatggcatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="4008" stop="1931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3708" g_stop="3460" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3459" i_stop="3249" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3248" g_stop="3044" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="454" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2559" g_stop="2371" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="643" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94">
            <donor d_prob="0.668" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2276" g_stop="2231" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="689" r_length="46" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E317736" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3708" e_stop="3460"/>
          <exon e_start="3248" e_stop="3044"/>
          <exon e_start="2559" e_stop="2371"/>
          <exon e_start="2276" e_stop="2231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATGGTGTGTATGTGTGATACTCTTTTTTATCTTTGACAAGTAGCTTGTAGTTGTAAAGTAAATATTGCATGTTCATCTTTAAACCTTTATTTTGCAGGACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATA</genome_strand>
        <mrna_strand>GATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG...................................................................................................................................................................................................................TTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGGAGCGTTGTATATATG..............................................................................................GACTTTGANCAGAATCACATGGATGAATTANGTCATGGCATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470034" ref_strand="+" ref_description="SGN-E470034 [cSTB-16-D14]">
      <seq>attttctgcagtaacagtagctaaaataagcaacaatggcgaaacagtcggcagtgatcgagcacaagtcttacgctagagttggactgcttggaaaccctagcgacgtttattttgggaacactatttctttcagcctcggaaacttttgggcttctgttcgtttggagccttctatagatctcgtcattgttcctcatccttctcatgatctcgttcaattcaattcaatttctcacctggtgaacaggttgcagaatgaggggtactatggaggggtgcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacacgatgggaatttcactctctcgtatgacactaacattccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="3963" stop="2144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3653" g_stop="3460" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="242" r_length="194" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3193" g_stop="3044" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="392" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2559" g_stop="2444" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="508" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E470034" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3653" e_stop="3460"/>
          <exon e_start="3193" e_stop="3044"/>
          <exon e_start="2559" e_stop="2444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGC</genome_strand>
        <mrna_strand>CGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGACGTTTATTTTGGGAACACTATTTCTTTCAGCCTCGGAAACTTTTGGGCTTCTGTTCGTTTGGAGCCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCATGATCTCGTTCAATTCAATTCAATTTCTCACCTG..........................................................................................................................................................................................................................................................................GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTGCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACACGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242858" ref_strand="+" ref_description="SGN-E242858 [cLED-31-A7]">
      <seq>tatagatctcgtcattgttcctcatccttctcacgatctcgtccaattcaattcaatttctcacctggtgaacaggttgcagaatgaggggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatttcactctctcgtatgacactaacattccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatctcatcaaagttgaggtaaggccgaaccttgtccttaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="3826" stop="2144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3526" g_stop="3460" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3193" g_stop="3044" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="217" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2559" g_stop="2444" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="333" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E242858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3526" e_stop="3460"/>
          <exon e_start="3193" e_stop="3044"/>
          <exon e_start="2559" e_stop="2444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGC</genome_strand>
        <mrna_strand>TATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG..........................................................................................................................................................................................................................................................................GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341250" ref_strand="+" ref_description="SGN-E341250 [cTOE-22-K8]">
      <seq>gtaacagtagctaacgattagatctatagattccaatttctgcagtaacacctacaataagcaacaatggcggcagtgatcgagcacaagtcttacgctagagttggactgcttggaaaccctagcgatgtttattttgggaacactatatccttcagcctcgggaatttttgggcttctgttcgtttggaaccttctatagatctcgtcattgttcctcatccttctcacgatctcgtccaattcaattcaatttctcacctggtgaacaggttgcagaatgaggggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatttcactctctcgtatgacactaacattccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttacaaagtcagacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="4023" stop="2184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3723" g_stop="3460" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3193" g_stop="3044" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="414" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2559" g_stop="2484" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="490" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E341250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3723" e_stop="3460"/>
          <exon e_start="3193" e_stop="3044"/>
          <exon e_start="2559" e_stop="2484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACAGTAGCTAACGATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATC</genome_strand>
        <mrna_strand>GTAACAGTAGCTAACGATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG..........................................................................................................................................................................................................................................................................GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554785" ref_strand="+" ref_description="SGN-E554785 [cTSC-5-G22]">
      <seq>ctaacgattagatctatagattccaatttctgcagtaacacctacaataagcaacaatggcggcagcgatcgagcacaagtcttacgctagagttggactgcttggaaaccctagcgatgtttattttgggaacactatatccttcagcctcgggaatttttgggcttctgttcgtttggaaccttctatagatctcgtcattgttcctcatccttctcacgatctcgtccaattcaattcaatttctcacctggtgaactggttgcagaatgaggggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatttcactctctcgtatgacactaacattccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgagttgccttcttgatttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="4013" stop="2197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3713" g_stop="3460" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3193" g_stop="3044" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="404" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2559" g_stop="2497" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="467" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E554785" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3713" e_stop="3460"/>
          <exon e_start="3193" e_stop="3044"/>
          <exon e_start="2559" e_stop="2497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACGATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTAC</genome_strand>
        <mrna_strand>CTAACGATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGCGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG..........................................................................................................................................................................................................................................................................GTGAACTGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334622" ref_strand="+" ref_description="SGN-E334622 [cTOD-23-I4]">
      <seq>accgctgtagattccaatatctgccgtaacagtagctaacgattagatctatagattccaatttctgcagtaacacctacaataagcaacaatggcggcagtgatcgagcacaagtcttacgctagagttggactgcttggaaaccctagcgatgtttattttggaaacactatatccttcagcctcgggaatttttgggcttctgttcgtttggaaccttctatagatctcgtcattgttcctcatccttctcacgatctcgtccaattcaattcaatttctcacctgttctatgtggattctcttgcaggttgattgaatttgacttaacacttggctgtaggtgaacaggttgcagaatgangggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatttcactctctcgtatgacactaacattcccccgccagacagggctttcaggntctagtgcaatcgtaagtgctgcactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="4048" stop="2216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3748" g_stop="3460" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3459" i_stop="3249" i_length="211">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3248" g_stop="3044" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="495" r_length="206" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2559" g_stop="2516" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="539" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E334622" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3748" e_stop="3460"/>
          <exon e_start="3248" e_stop="3044"/>
          <exon e_start="2559" e_stop="2516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCTGTAGATTCCAATATCTGCCGTAACAGTAGCTAACGATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATT-CCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAG</genome_strand>
        <mrna_strand>ACCGCTGTAGATTCCAATATCTGCCGTAACAGTAGCTAACGATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGAAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG...................................................................................................................................................................................................................TTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGANGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGNTCTAGTGCAATCGTAAGTGCTGCACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307750" ref_strand="+" ref_description="SGN-E307750 [cLEY-16-J11]">
      <seq>ccgtaacagtttctaattattagatctatagattccaatttgtgcagggacacctacaataagcaacaatggcggcagtgatcgagcacaagtcttacgctagagttggactgcttggaaaccctagcgatgtttattttgggaacactatatccttcagcctcgggaatttttgggcttctgttcgtttggaaccttctatagatctcgtcattgttcctcatccttctcacgatctcgtccaattcaattcaatttctcacctgttgaacaggttgcagaatgaggggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatgtcactctctggtatgacactaacattccccgccagacagggctttcaggttctagtgcaatcgtaagtgctgcactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="4025" stop="2216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3725" g_stop="3460" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3193" g_stop="3044" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="416" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2559" g_stop="2516" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="460" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E307750" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3725" e_stop="3460"/>
          <exon e_start="3193" e_stop="3044"/>
          <exon e_start="2559" e_stop="2516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAACAGTAGCTAACGATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAACCAGGCACAATCAAAACCTACATCTCGGACGTTGAAACTTTACATACTACCTTCTGGATTTTAGCTATGCAAATAAATTAGGAGTGAAATACATGCTTGTTTCAATCATAACTGACATTACATCACACTACTTCATGATCATGATCTGAATATGGCATTGCTATATGATGAATAAGATAAATAAAAGATTTGATTTATCTCATGTTGAAAAAGTTTGATTAACATATCAAATACTTTCCACATCTCAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAG</genome_strand>
        <mrna_strand>CCGTAACAGTTTCTAATTATTAGATCTATAGATTCCAATTTGTGCAGGGACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG..........................................................................................................................................................................................................................................................................TTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATGTCACTCTCTGGTATGACACTAACATTCCCCGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205776" ref_strand="+" ref_description="SGN-E205776 [cLEC-20-A23]">
      <seq>agagttggactgcttggaaaccctagcgatgtttattttgggaacactatatccttcagcctcgggaatttttgggcttctgttcgtttggaaccttctatagatctcgtcattgttcctcatccttctcacgatctcgtccaattcaattcaatttctcacctggtgaacaggttgcagaatgaggggtactatggaggggttcgtttacttatggcaatcgttaaaatatttcacaactattgcaaagagagcaacatcaccttacatgatgggaatttcactctctcgtatgacactaacattccccgccaggtagaacctaacattgcaagatttatctgcccttcgatagataagttatgtggattggaatcacgttagctaattgttgttaaactcttactaaacgttctttgacttgaaactgctcaaatatagagtgagcttctgtttatatggtcctattgtttggttttggaaatgtcttttcgtaagtttacaatttatctaaaatgtcttagtcgagtaaaataattctttaatttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="3924" stop="2507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3624" g_stop="3460" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3193" g_stop="2807" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="552" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E205776" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3624" e_stop="3460"/>
          <exon e_start="3193" e_stop="2807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTGGTATTCTATCTTATACTTCTCCTTTATTCATCTGTTTTACTTATACTGTTTTCGGTTATCAGGATATATTAGAATTATTGACATGCCAATGCGTTTATACTTTGGGATGCGTTTATCAGGATATATAATTGATGTTTAATTAATCATTGATTAGCCAATTCTGATTGGTATTTTCATAATCAAGATCAGAAATTTAACACTTTTTTTTTAGTTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAAC</genome_strand>
        <mrna_strand>AGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG..........................................................................................................................................................................................................................................................................GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAAGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="6682" stop="105192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6982" g_stop="7168" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7169" i_stop="7200" i_length="32">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="7338" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="325" r_length="138" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6982" e_stop="7168"/>
          <exon e_start="7201" e_stop="7338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTGCGCTGCAATATTTGTATAAAATTTGCATTTATCTACAATCAAATTGAAGTAAAATGATTGTAAATTGTATTATTAAGTGTATAGCACGAAGATATATATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAATAGAAACTCAATTTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTT................................GAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="6682" stop="7434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6982" g_stop="7134" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6982" e_stop="7134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="6683" stop="105317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6983" g_stop="7168" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7169" i_stop="7200" i_length="32">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="7463" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="450" r_length="264" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6983" e_stop="7168"/>
          <exon e_start="7201" e_stop="7463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTGCGCTGCAATATTTGTATAAAATTTGCATTTATCTACAATCAAATTGAAGTAAAATGATTGTAAATTGTATTATTAAGTGTATAGCACGAAGATATATATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAATAGAAACTCAATTTATACACTTCTGTGTATAAAGCGAGAGAGGCGAAC-AG-AGGGAGAGTGGCGATCGAGATTTTTGGAAGAGAGGCGACTGACAAACTTTGGCTAACGTTTGCTATGGAATACAATTAAATCAAATCGTAGCTACTCTATTTATTTTAGATTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTT................................GAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588903" ref_strand="+" ref_description="SGN-E588903 [42465]">
      <seq>cgtgtttttatatagtcaaattcaatccacaaagaaaaaaattggaaaataacttcccctctcattgctgtaaatttgagagggagggggtttcttttttcttcaaacaatctctcttttcataatttgtttatcttctgaattttacagaaggtaacaaaaattcttgaaaaggagaggaaaaaaattaaaaattggaagtagccaaagtttcattggccatttttagaggagggttttgaataaaatatcttggtagtgctcatggtgtctgatatttattacccttcaaagaaaagcgacgatttttgtgaagacgtttgtggcgagcagtctaccccttggaatagtaagcatgtcaagactacggtgtatgcttcgaggattggatttaaaggctattgtttttttggttgtttttgtgccattatgtatagttggtatatactttcatggacagaagattacctacttcctccgcccaatatggcaatctcctccgaagccctttattgaacttacccattattatcatgacaatgtctcaatggagaatctttgcaagcaacatggatggggaattcgtgaatatcctaggcgtgtctatgatgctgttttgtttagtaatgaagtggacatgcttactatcagatggaaggaattgtatccttacatcacacagtttgttcttctcgagtccaactccacgtttactggattaccaaagccatttacttttgctattaaccgggaccaatttaagtttgttgagcctcgaattggacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="17028" stop="18912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17328" g_stop="17671" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17672" i_stop="18158" i_length="487">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18159" g_stop="18614" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="789" r_length="459" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E588903" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17328" e_stop="17671"/>
          <exon e_start="18159" e_stop="18614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTTTTTATATAGTCAAATTCAATCCACTAAGAAAAAAAAATTGTAAAATAACTTCCCCTCTCATTGATAATGGCAATTCCATTGCTGTAAATTTGAGAGGGAAGGGGGTTTCTTTTTTCTTCAGACAATCTCTCTTTTCATAATTCGTTTATTTTCTGAATTTTACAGAAGGTAACAAAAAATCTTGAAAAAGAGAGG----AAA--AAAA-TTGGAAGAAGCCAAAGTTTCATTGGCCATTTTTAGAGAAGGGGTTTGAAGAAATTATCTTGGTAGTGCTCATGGTGCCTGATATTTATTACCCTTCAAAGAAAAGCGACGATTTTTGTGAAGACGTTTGTGGCGAGGTACCTTTTTTCCCTTTTAATTGTCATTCACCATTTTATGTGCTTAATAGTTTGGAATTTTTAGTAAATATTGGTTTTTTGTTGTTGGGTTTCTGGGGAATTATGAAATATGTTGTTGTCTTTTTTCATTCTGGTATTGCTTATAAACCCTAAAATCTTGAATTGGGATGATGTGGGGTTGCTCTGCTTCCAAAGAGGAATTTTATTTTCATAACAATATGCAATTTGGTTGTTTTTTCTTCTGGAAATTTGTGGGTGTGTTGGGGTTTTGGGAACTATTCATATGGATATTATCTAAACTGATGGAAGGTTCAGTTTTCTTATGGTTGGATGAAAAGCTTTGAAACAAAAAATTAATATGTTGTTCTCCTCTTGAAAGATATTTGGGAATTTCTAAGGGGTTCAATAAACTAATGTGTGAATATTTGATTGTTTCAAAGGTTTGCTGCTATTTGCATCTTTCTAAAATCATTTTTTTGATATGCAGCAGTCTACCCC-TGGAATAGTAAGCATGTCAAGATTAAGGTGTATGCTTCGAGGATTGGATTTAAAGGCTATTGTCTTCTTGGTTGTTTTTGTGCCATTATGTATAGTTGGTATATACTTGCATGGACAGAAGATTACCTACTTCCTCCGACCAATATGGCAATCTCCTCCAAAGCCCTTTATTGAACTTACCCATTATTATCATGAGAATGTCTCCATGGAGAATCTTTGCAAGCAACATGGATGGGGAATTCGTGAATATCCTAGGCGTGTCTATGATGCTGTTTTGTTTAGTAATGAAGTGGACATGCTTACTATCAGATGGAAGGAATTGTATCCTTACATCACACAGTTTGTTCTGCTCGAGTCAAACTCCACGTTTACTGGATTACCAAAACCATTTACTTTTGCTATTAACCGGGACCAATTTAAGTTTGTTGAGCCTCG-ATT-GACTTAT</genome_strand>
        <mrna_strand>CGTGTTTTTATATAGTCAAATTCAATCCACAAAGAAA--AAAATTGGAAAATAACTTCCCCTCTC----AT--T-G-----C--T-G-T--AAATTTGAGAGGG-AGGGGGTTTCTTTTTTCTTCAAACAATCTCTCTTTTCATAATTTGTTTATCTTCTGAATTTTACAGAAGGTAACAAAAATTCTTGAAAAGGAGAGGAAAAAAATTAAAAATTGGAAGTAGCCAAAGTTTCATTGGCCATTTTTAGAGGAGGGTTTTGAATAAAATATCTTGGTAGTGCTCATGGTGTCTGATATTTATTACCCTTCAAAGAAAAGCGACGATTTTTGTGAAGACGTTTGTGGCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCTACCCCTTGGAATAGTAAGCATGTCAAGACTACGGTGTATGCTTCGAGGATTGGATTTAAAGGCTATTGTTTTTTTGGTTGTTTTTGTGCCATTATGTATAGTTGGTATATACTTTCATGGACAGAAGATTACCTACTTCCTCCGCCCAATATGGCAATCTCCTCCGAAGCCCTTTATTGAACTTACCCATTATTATCATGACAATGTCTCAATGGAGAATCTTTGCAAGCAACATGGATGGGGAATTCGTGAATATCCTAGGCGTGTCTATGATGCTGTTTTGTTTAGTAATGAAGTGGACATGCTTACTATCAGATGGAAGGAATTGTATCCTTACATCACACAGTTTGTTCTTCTCGAGTCCAACTCCACGTTTACTGGATTACCAAAGCCATTTACTTTTGCTATTAACCGGGACCAATTTAAGTTTGTTGAGCCTCGAATTGGACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270516" ref_strand="+" ref_description="SGN-E270516 [cLEN-1-G21]">
      <seq>tctcctccaaagccctttattgaacttacccattattatcatgagaatgtctccatggagaatctttgcaagcaacatggatggggaattcgtgaatatcctaggcgtgtctatgatgctgttttgtttagtaatgaagtggacatgcttactatcagatggaaggaattgtatccttacatcacacagtttgttctgctcgagtcaaactccacgtttactggattaccaaaaccatttacttttgctattaaccgggaccaatttaagtttgttgagcctcgattgacttatggaaccattggaggaagattcaggaaaggtgaaaatccgtttgttgaagaggcatatcagagagtagcactcgaccagcttttgagaatagctggaatagaggatgatgatttgctgataatgtccgatgttgatgaaattcctagcaggcacaccatcgatcttttaagatggtgtgatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="18021" stop="19098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18321" g_stop="18798" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E270516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18321" e_stop="18798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCAAAGCCCTTTATTGAACTTACCCATTATTATCATGAGAATGTCTCCATGGAGAATCTTTGCAAGCAACATGGATGGGGAATTCGTGAATATCCTAGGCGTGTCTATGATGCTGTTTTGTTTAGTAATGAAGTGGACATGCTTACTATCAGATGGAAGGAATTGTATCCTTACATCACACAGTTTGTTCTGCTCGAGTCAAACTCCACGTTTACTGGATTACCAAAACCATTTACTTTTGCTATTAACCGGGACCAATTTAAGTTTGTTGAGCCTCGATTGACTTATGGAACCATTGGAGGAAGATTCAGGAAAGGTGAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACA</genome_strand>
        <mrna_strand>TCTCCTCCAAAGCCCTTTATTGAACTTACCCATTATTATCATGAGAATGTCTCCATGGAGAATCTTTGCAAGCAACATGGATGGGGAATTCGTGAATATCCTAGGCGTGTCTATGATGCTGTTTTGTTTAGTAATGAAGTGGACATGCTTACTATCAGATGGAAGGAATTGTATCCTTACATCACACAGTTTGTTCTGCTCGAGTCAAACTCCACGTTTACTGGATTACCAAAACCATTTACTTTTGCTATTAACCGGGACCAATTTAAGTTTGTTGAGCCTCGATTGACTTATGGAACCATTGGAGGAAGATTCAGGAAAGGTGAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347449" ref_strand="+" ref_description="SGN-E347449 [cTOF-33-F13]">
      <seq>attgacttatggaaccattggaggaagattcaggaaaggtgaaaatccgtttgttgaagaggcatatcagagagtagcactcgaccagcttttgagaatagctggaatagaggatgatgatttgctgataatgtccgatgttgatgaaattcctagcaggcacaccatcgatcttttaagatggtgtgatgacattcctccaattcttcaccttcattttaggaattacttgtactcttttgaatttgagcttaagcacagaagttggagagcttcagtccacaggtatcagagtggcaagactcgatacgtacactatcgtcagactgattaccttttggcagattcaggttggcattgtagcttttgcttccgccacatctctgacttcatattcaaaatgaaagcttacagccacactgatagagtgaggttcttgcattatttgaaccctagaagaatacaagatatcatttgtgaaggatctgatttatatgacatgcttcctgaggagtacacattcaaggatatcattggtaacatgggacctctacctcattcttactcagccgtgcatcttcctgcgcatttgctggataatcccgagaagtataagtatctcttgcctgggaactgcaaaagagaaagtggctaagttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="18305" stop="19566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18605" g_stop="19266" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E347449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18605" e_stop="19266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACTTATGGAACCATTGGAGGAAGATTCAGGAAAGGTGAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACATTCCTCCAATTCTTCACCTTCATTTTAGGAATTACTTGTACTCTTTTGAATTTGAGCTTAAGCACAGAAGTTGGAGAGCTTCAGTCCACAGGTATCAGAGTGGCAAGACTCGATACGTACACTATCGTCAGACTGATTACCTTTTGGCAGATTCAGGTTGGCATTGTAGCTTTTGCTTCCGCCACATCTCTGACTTCATATTCAAAATGAAAGCTTACAGCCACACTGATAGAGTGAGGTTCTTGCATTATTTGAACCCTAGAAGAATACAAGATATCATTTGTGAAGGATCTGATTTATATGACATGCTTCCTGAGGAGTACACATTCAAGGATATCATTGGTAACATGGGACCTCTACCTCATTCTTACTCAGCCGTGCATCTTCCTGCGCATTTGCTGGATAATCCCGAGAAGTATAAGTATCTCTTGCCTGGGAACTGCAAAAGAGAAAGTGGCTAAGTTGTTA</genome_strand>
        <mrna_strand>ATTGACTTATGGAACCATTGGAGGAAGATTCAGGAAAGGTGAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACATTCCTCCAATTCTTCACCTTCATTTTAGGAATTACTTGTACTCTTTTGAATTTGAGCTTAAGCACAGAAGTTGGAGAGCTTCAGTCCACAGGTATCAGAGTGGCAAGACTCGATACGTACACTATCGTCAGACTGATTACCTTTTGGCAGATTCAGGTTGGCATTGTAGCTTTTGCTTCCGCCACATCTCTGACTTCATATTCAAAATGAAAGCTTACAGCCACACTGATAGAGTGAGGTTCTTGCATTATTTGAACCCTAGAAGAATACAAGATATCATTTGTGAAGGATCTGATTTATATGACATGCTTCCTGAGGAGTACACATTCAAGGATATCATTGGTAACATGGGACCTCTACCTCATTCTTACTCAGCCGTGCATCTTCCTGCGCATTTGCTGGATAATCCCGAGAAGTATAAGTATCTCTTGCCTGGGAACTGCAAAAGAGAAAGTGGCTAAGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347308" ref_strand="+" ref_description="SGN-E347308 [cTOF-33-I15]">
      <seq>attgacttatggaaccattggaggaagattcaggaaaggtgaaaatccgtttgttgaagaggcatatcagagagtagcactcgaccagcttttgagaatagctggaatagaggatgatgatttgctgataatgtccgatgttgatgaaattcctagcaggcacaccatcgatcttttaagatggtgtgatgacattcctccaattcttcaccttcattttaggaattacttgtactcttttgaatttgagcttaagcacagaagttggagagcttcagtccacaggtatcagagtggcaagactcgatacgtacactatcgtcagactgattaccttttggcagattcaggttggcattgtagcttttgcttccgccacatctctgacttcatattcaaaatgaaagcttacagccacactgatagagtgaggttcttgcattatttgaaccctagaagaatacaagatatcatttgtgaaggatctgatttatatgacatgcttcctgaggagtacacattcaaggatatcattggtaacatgggacctctacctcattcttactcagccgtgcatcttcctgcgcatttgctggataatcccgagaagtataagtatctcttgcctgggaactgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="18305" stop="19544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18605" g_stop="19244" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E347308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18605" e_stop="19244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACTTATGGAACCATTGGAGGAAGATTCAGGAAAGGTGAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACATTCCTCCAATTCTTCACCTTCATTTTAGGAATTACTTGTACTCTTTTGAATTTGAGCTTAAGCACAGAAGTTGGAGAGCTTCAGTCCACAGGTATCAGAGTGGCAAGACTCGATACGTACACTATCGTCAGACTGATTACCTTTTGGCAGATTCAGGTTGGCATTGTAGCTTTTGCTTCCGCCACATCTCTGACTTCATATTCAAAATGAAAGCTTACAGCCACACTGATAGAGTGAGGTTCTTGCATTATTTGAACCCTAGAAGAATACAAGATATCATTTGTGAAGGATCTGATTTATATGACATGCTTCCTGAGGAGTACACATTCAAGGATATCATTGGTAACATGGGACCTCTACCTCATTCTTACTCAGCCGTGCATCTTCCTGCGCATTTGCTGGATAATCCCGAGAAGTATAAGTATCTCTTGCCTGGGAACTGCAAA</genome_strand>
        <mrna_strand>ATTGACTTATGGAACCATTGGAGGAAGATTCAGGAAAGGTGAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACATTCCTCCAATTCTTCACCTTCATTTTAGGAATTACTTGTACTCTTTTGAATTTGAGCTTAAGCACAGAAGTTGGAGAGCTTCAGTCCACAGGTATCAGAGTGGCAAGACTCGATACGTACACTATCGTCAGACTGATTACCTTTTGGCAGATTCAGGTTGGCATTGTAGCTTTTGCTTCCGCCACATCTCTGACTTCATATTCAAAATGAAAGCTTACAGCCACACTGATAGAGTGAGGTTCTTGCATTATTTGAACCCTAGAAGAATACAAGATATCATTTGTGAAGGATCTGATTTATATGACATGCTTCCTGAGGAGTACACATTCAAGGATATCATTGGTAACATGGGACCTCTACCTCATTCTTACTCAGCCGTGCATCTTCCTGCGCATTTGCTGGATAATCCCGAGAAGTATAAGTATCTCTTGCCTGGGAACTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345922" ref_strand="+" ref_description="SGN-E345922 [cTOF-24-J7]">
      <seq>attgacttatggaaccattggaggaagattcaggaaaggtgaaaatccgtttgttgaagaggcatatcagagagtagcactcgaccagcttttgagaatagctggaatagaggatgatgatttgctgataatgtccgatgttgatgaaattcctagcaggcacaccatcgatcttttaagatggtgtgatgacattcctccaattcttcaccttcattttaggaattacttgtactcttttgaatttgagcttaagcacagaagttggagagcttcagtccacaggtatcagagtggcaagactcgatacgtacactatcgtcagactgattaccttttggcagattcaggttggcattgtagcttttgcttccgccacatctctgacttcatattcaaaatgaaagcttacagccacactgatagagtgaggttcttgcattatttgaaccctagaagaatacaagatatcatttgtgaaagatctgatttatatgacatgcttcctgaggagtacacattcaaggatatcattggtaacatgggacctctacctcattcttactcagccgtgcatcttcctgcgcatttgctggatatcccgagaagtataagtatctcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="18305" stop="19530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18605" g_stop="19230" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E345922" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18605" e_stop="19230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACTTATGGAACCATTGGAGGAAGATTCAGGAAAGGTGAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACATTCCTCCAATTCTTCACCTTCATTTTAGGAATTACTTGTACTCTTTTGAATTTGAGCTTAAGCACAGAAGTTGGAGAGCTTCAGTCCACAGGTATCAGAGTGGCAAGACTCGATACGTACACTATCGTCAGACTGATTACCTTTTGGCAGATTCAGGTTGGCATTGTAGCTTTTGCTTCCGCCACATCTCTGACTTCATATTCAAAATGAAAGCTTACAGCCACACTGATAGAGTGAGGTTCTTGCATTATTTGAACCCTAGAAGAATACAAGATATCATTTGTGAAGGATCTGATTTATATGACATGCTTCCTGAGGAGTACACATTCAAGGATATCATTGGTAACATGGGACCTCTACCTCATTCTTACTCAGCCGTGCATCTTCCTGCGCATTTGCTGGATAATCCCGAGAAGTATAAGTATCTCTTGC</genome_strand>
        <mrna_strand>ATTGACTTATGGAACCATTGGAGGAAGATTCAGGAAAGGTGAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACATTCCTCCAATTCTTCACCTTCATTTTAGGAATTACTTGTACTCTTTTGAATTTGAGCTTAAGCACAGAAGTTGGAGAGCTTCAGTCCACAGGTATCAGAGTGGCAAGACTCGATACGTACACTATCGTCAGACTGATTACCTTTTGGCAGATTCAGGTTGGCATTGTAGCTTTTGCTTCCGCCACATCTCTGACTTCATATTCAAAATGAAAGCTTACAGCCACACTGATAGAGTGAGGTTCTTGCATTATTTGAACCCTAGAAGAATACAAGATATCATTTGTGAAAGATCTGATTTATATGACATGCTTCCTGAGGAGTACACATTCAAGGATATCATTGGTAACATGGGACCTCTACCTCATTCTTACTCAGCCGTGCATCTTCCTGCGCATTTGCTGGAT-ATCCCGAGAAGTATAAGTATCTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266769" ref_strand="+" ref_description="SGN-E266769 [cLEI-7-E6]">
      <seq>gaaaatccgtttgttgaagaggcatatcagagagtagcactcgaccagcttttgagaatagctggaatagaggatgatgatttgctgataatgtccgatgttgatgaaattcctagcaggcacaccatcgatcttttaagatggtgtgatgacattcctccaattcttcaccttcattttaggaattacttgtactcttttgaatttgagcttaagcacagaagttggagagcttcagtccacaggtatcagagtggcaagactcgatacgtacactatcgtcagactgattaccttttggcagattcaggttggcattgtagcttttgcttccgccacatctctgacttcatattcaaaatgaaagcttacagccacactgatagagtgaggttcttgcattatttgaaccctagaagaatacaagatatcatttgtgaaggatctgatttatatgacatgcttcctgaggagtacacattcaaggatatcattggtaacatgggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="18345" stop="19453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18645" g_stop="19153" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E266769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18645" e_stop="19153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACATTCCTCCAATTCTTCACCTTCATTTTAGGAATTACTTGTACTCTTTTGAATTTGAGCTTAAGCACAGAAGTTGGAGAGCTTCAGTCCACAGGTATCAGAGTGGCAAGACTCGATACGTACACTATCGTCAGACTGATTACCTTTTGGCAGATTCAGGTTGGCATTGTAGCTTTTGCTTCCGCCACATCTCTGACTTCATATTCAAAATGAAAGCTTACAGCCACACTGATAGAGTGAGGTTCTTGCATTATTTGAACCCTAGAAGAATACAAGATATCATTTGTGAAGGATCTGATTTATATGACATGCTTCCTGAGGAGTACACATTCAAGGATATCATTGGTAACATGGGACC</genome_strand>
        <mrna_strand>GAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACATTCCTCCAATTCTTCACCTTCATTTTAGGAATTACTTGTACTCTTTTGAATTTGAGCTTAAGCACAGAAGTTGGAGAGCTTCAGTCCACAGGTATCAGAGTGGCAAGACTCGATACGTACACTATCGTCAGACTGATTACCTTTTGGCAGATTCAGGTTGGCATTGTAGCTTTTGCTTCCGCCACATCTCTGACTTCATATTCAAAATGAAAGCTTACAGCCACACTGATAGAGTGAGGTTCTTGCATTATTTGAACCCTAGAAGAATACAAGATATCATTTGTGAAGGATCTGATTTATATGACATGCTTCCTGAGGAGTACACATTCAAGGATATCATTGGTAACATGGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540265" ref_strand="+" ref_description="SGN-E540265 [TUS-60-H7](-)">
      <seq>ttcataattctctgttgtggatgaacataatgattattcacttcttgatagttttggacccaatcttggcccttctgttgactacactcatagcacttgccatttaccagaagtgaatggtaacacaacctgtggaatttcagaattggataacttggaactggatagtcctccagacttccaacttgcagatttgccgtttggttctcaagagaatatctttagttggttggaccggctatagagatgatggcaatgagataatgctttatgcattctcggatggagaatatacttcaacaagattgtgttcttgaacagctacaggaatctttcttcaatttcagttttcgtggtttcaacaaatccttatcaaaaaatgctcattttcccaccattactacagcccccagaagaaaagaaaacagaaatattgctatatctaaaatgctggacgatatacaagttgaaggagttgttgcaagaacctactacaatataccaaggatcaacgtttgggagttggaactgttacaccttagcttattgaattggctcaaactttgatttaatgttctgatttctcttgtcaagactctcatatcccttctgttctattcagcatgttctgttctgacccccaaatacttcgggaagtttctcgtttgtgctagtttatattttacttgaagtgtggacaggattctattgctttcttatgcatctttcattgtctgaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="21747" stop="20318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21447" g_stop="21257" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21256" i_stop="21166" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21165" g_stop="20619" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="737" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="767"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E540265" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21447" e_stop="21257"/>
          <exon e_start="21165" e_stop="20619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAATTCTCTGTTGTGTGATGAACATAATGATTATTCACTTCTTGATAGTTTTGGACCCAATCTTGGCCCTTCTGTTGACTACACTCATAGCACTTGCCATTTACCAGAAGTGAATGGTAACACAACCTGTGGAATTTCAGAATTGGATAACTTGGAACTGGATAGTCCTCCAGACTTCCAACTTGCAGTAAGTTTCCCATCCTTGTAGATGGTAATGTGTTTTTTGTTTTATATGTATAAGAATAGCATGTGTAGCTGATGATGTTGTGTTTTACCAGGATTTGCCGTTTGGTTCTCAAGAGAATATCTTTAGTTGGTTGGACCGGCTATAGAGATGATGGCAATGAGATAATGCTTTATGCATTCTCGGATGGAGAATATACTTCAACAAGATTGTGTTCTTGAACAGCTACAGGAATCTTTCTTCAATTTCAGTTTTCGTGGTTTCAACAAATCCTTATCAAAAAATGCTCATTTTCCCACCATTACTACAGCCCACAGAAGAAAAGAAAACAGAAATATTGCTATATCTAAAATGCTGGACGATATACAAGTTGAAGGAGTTGTTGCAAGAACCTACTACAATATACCAAGGATCAACGTTTGGGAGTTGGAACTGTTACACCTTAGCTTATTGAATTGGCTCAAACTTTGATTTAATGTTCTGATTTCTCTTGTCAAGACTCTCATATCCCTTCTGTTCTATTCAGCATGTTCTGTTCTGACCCCCAAATACTTCGGGAAGTTTCTCGTTTGTGCTAGTTTATATTTTACTTGAAGTGTGGACAGGATTCTATTGCTTTCTTATGCATCTTTCATTGTCTG</genome_strand>
        <mrna_strand>TTCATAATTCTCTGTTGTG-GATGAACATAATGATTATTCACTTCTTGATAGTTTTGGACCCAATCTTGGCCCTTCTGTTGACTACACTCATAGCACTTGCCATTTACCAGAAGTGAATGGTAACACAACCTGTGGAATTTCAGAATTGGATAACTTGGAACTGGATAGTCCTCCAGACTTCCAACTTGCA...........................................................................................GATTTGCCGTTTGGTTCTCAAGAGAATATCTTTAGTTGGTTGGACCGGCTATAGAGATGATGGCAATGAGATAATGCTTTATGCATTCTCGGATGGAGAATATACTTCAACAAGATTGTGTTCTTGAACAGCTACAGGAATCTTTCTTCAATTTCAGTTTTCGTGGTTTCAACAAATCCTTATCAAAAAATGCTCATTTTCCCACCATTACTACAGCCCCCAGAAGAAAAGAAAACAGAAATATTGCTATATCTAAAATGCTGGACGATATACAAGTTGAAGGAGTTGTTGCAAGAACCTACTACAATATACCAAGGATCAACGTTTGGGAGTTGGAACTGTTACACCTTAGCTTATTGAATTGGCTCAAACTTTGATTTAATGTTCTGATTTCTCTTGTCAAGACTCTCATATCCCTTCTGTTCTATTCAGCATGTTCTGTTCTGACCCCCAAATACTTCGGGAAGTTTCTCGTTTGTGCTAGTTTATATTTTACTTGAAGTGTGGACAGGATTCTATTGCTTTCTTATGCATCTTTCATTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349697" ref_strand="-" ref_description="SGN-E349697 [cTOS-3-J9]">
      <seq>tttccaacttgcagatttgccgtttggttctcaagagaatatctttagttggtgggaccggctatagagatgatggcaatgagataatgctttatgcattctcggatggagaatatacttcaacaagattgtgttcttgaacagctacaggaatctttcttcaatttcagttttcgtggtttcaacaaatccttatcaaaaaatgctcattttcccaccattactacagcccccagaagaaaagaaaacagaaatattgctatatctaaaatgctggacgatatacaagttgaaggagttgttgcaagaacctactacaatataccaaggatcaacgtttgggagttggaactgttaccccttagcttattgaattggctcaaactttgatttaatgttctgatttctcttgtcaagactctcatatcccttctgttctattcagcatgttctgttttgacccccaaatacttcgggaagtttctcgtttgtgctagtttatattttacttgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="21468" stop="20365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21269" g_stop="21257" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21256" i_stop="21166" i_length="91">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21165" g_stop="20665" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="514" r_length="501" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="537"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E349697" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349697" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21269" e_stop="21257"/>
          <exon e_start="21165" e_stop="20665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAACTTGCAGTAAGTTTCCCATCCTTGTAGATGGTAATGTGTTTTTTGTTTTATATGTATAAGAATAGCATGTGTAGCTGATGATGTTGTGTTTTACCAGGATTTGCCGTTTGGTTCTCAAGAGAATATCTTTAGTTGGTTGGACCGGCTATAGAGATGATGGCAATGAGATAATGCTTTATGCATTCTCGGATGGAGAATATACTTCAACAAGATTGTGTTCTTGAACAGCTACAGGAATCTTTCTTCAATTTCAGTTTTCGTGGTTTCAACAAATCCTTATCAAAAAATGCTCATTTTCCCACCATTACTACAGCCCACAGAAGAAAAGAAAACAGAAATATTGCTATATCTAAAATGCTGGACGATATACAAGTTGAAGGAGTTGTTGCAAGAACCTACTACAATATACCAAGGATCAACGTTTGGGAGTTGGAACTGTTACACCTTAGCTTATTGAATTGGCTCAAACTTTGATTTAATGTTCTGATTTCTCTTGTCAAGACTCTCATATCCCTTCTGTTCTATTCAGCATGTTCTGTTCTGACCCCCAAATACTTCGGGAAGTTTCTCGTTTGTGCTAGTTTATATTTTACTTGAA</genome_strand>
        <mrna_strand>TTTCCAACTTGCA...........................................................................................GATTTGCCGTTTGGTTCTCAAGAGAATATCTTTAGTTGGTGGGACCGGCTATAGAGATGATGGCAATGAGATAATGCTTTATGCATTCTCGGATGGAGAATATACTTCAACAAGATTGTGTTCTTGAACAGCTACAGGAATCTTTCTTCAATTTCAGTTTTCGTGGTTTCAACAAATCCTTATCAAAAAATGCTCATTTTCCCACCATTACTACAGCCCCCAGAAGAAAAGAAAACAGAAATATTGCTATATCTAAAATGCTGGACGATATACAAGTTGAAGGAGTTGTTGCAAGAACCTACTACAATATACCAAGGATCAACGTTTGGGAGTTGGAACTGTTACCCCTTAGCTTATTGAATTGGCTCAAACTTTGATTTAATGTTCTGATTTCTCTTGTCAAGACTCTCATATCCCTTCTGTTCTATTCAGCATGTTCTGTTTTGACCCCCAAATACTTCGGGAAGTTTCTCGTTTGTGCTAGTTTATATTTTACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540268" ref_strand="+" ref_description="SGN-E540268 [TUS-60-H7]">
      <seq>tgaagatgaaaaagaaggtgaatatgtggtttcaaaaatcttttaccaacagcagaagcaatctgtcaaggccaatgattgttgtgacaatgaggaagccagtgtgggagcgaatcaaactgggcctacaactcccaagacggttacacccaatccccctcgagatggagaaaccccttcctatgatgatattttagatgaatctttacccttctcacctgatcaggaagtggaagttgccaaagaaccagggcagccttctgatgctaaaattaagtgtgagatggagtactccacatgcttggctggagaatcacaagcagctgatgcaaatgatgttcataattctctgttgtgtgatgaacataatgattattcacttcttgatagttttggacccaatcttggcccttctgttgactacactcatagcacttgccatttaccagaagtgaatggtaacacaacctgtggaatttcagaattggataacttggaactggatagtcctccagacttccaacttgcagatttgccgtttggttctcaagagaatatctttagttggttggaccggctatagagatgatggcaatgagataatgctttatgcattctcggatggagaatatacttcaacaagattgtgttcttgaacagctacaggaatctttcttcaatttcagttttcgtggtttcaacaaatccttatcaaaaaatgctcattttcccaccattactacagcccacagaagaaaagaaaacagaatattgctatatctaaaatgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="22256" stop="20601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21956" g_stop="21731" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21730" i_stop="21560" i_length="171">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21559" g_stop="21257" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="529" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21256" i_stop="21166" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21165" g_stop="20901" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="793" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E540268" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21956" e_stop="21731"/>
          <exon e_start="21559" e_stop="21257"/>
          <exon e_start="21165" e_stop="20901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGAAAAAGAAGGTGAATATGTGGTTTCAAAAATCTTTTACCAACAGCAGAAGCAATCTGTCAAGGCCAATGATTGTTGTGACAATGAGGAAGCCAGTGTGGGAGCGAATCAAACTGGGCCTACAACTCCCAAGACGGTTACACCCAATCCCCCTCGAGATGGAGAAACCCCTTCCTATGATGATATTTTAGATGAATCTTTACCCTTCTCACCTGATCAGGTAAAAACAATTGGATGATGCAGTTGCATCTTTGGCTGTTCTGTACATTATTTCTGTTTGCAAAATTGCATGTTTTCAACTCATGAATACATATTTCTCGTAGTTCTTTCTACCTATATGCATTTTTTTAACATAATTTTTTCGTACACTGATCTTTGTTTTGTTGTTTAGGAAGTGGAAGTTGCCAAAGAACCAGGGCAGCCTTCTGATGCTAAAATTAAGTGTGAGATGGAGTACTCCACATGCTTGGCTGGAGAATCACAAGCAGCTGATGCAAATGATGTTCATAATTCTCTGTTGTGTGATGAACATAATGATTATTCACTTCTTGATAGTTTTGGACCCAATCTTGGCCCTTCTGTTGACTACACTCATAGCACTTGCCATTTACCAGAAGTGAATGGTAACACAACCTGTGGAATTTCAGAATTGGATAACTTGGAACTGGATAGTCCTCCAGACTTCCAACTTGCAGTAAGTTTCCCATCCTTGTAGATGGTAATGTGTTTTTTGTTTTATATGTATAAGAATAGCATGTGTAGCTGATGATGTTGTGTTTTACCAGGATTTGCCGTTTGGTTCTCAAGAGAATATCTTTAGTTGGTTGGACCGGCTATAGAGATGATGGCAATGAGATAATGCTTTATGCATTCTCGGATGGAGAATATACTTCAACAAGATTGTGTTCTTGAACAGCTACAGGAATCTTTCTTCAATTTCAGTTTTCGTGGTTTCAACAAATCCTTATCAAAAAATGCTCATTTTCCCACCATTACTACAGCCCACAGAAGAAAAGAAAACAGAAATATTGCTATATCTAAAATGCTGGA</genome_strand>
        <mrna_strand>TGAAGATGAAAAAGAAGGTGAATATGTGGTTTCAAAAATCTTTTACCAACAGCAGAAGCAATCTGTCAAGGCCAATGATTGTTGTGACAATGAGGAAGCCAGTGTGGGAGCGAATCAAACTGGGCCTACAACTCCCAAGACGGTTACACCCAATCCCCCTCGAGATGGAGAAACCCCTTCCTATGATGATATTTTAGATGAATCTTTACCCTTCTCACCTGATCAG...........................................................................................................................................................................GAAGTGGAAGTTGCCAAAGAACCAGGGCAGCCTTCTGATGCTAAAATTAAGTGTGAGATGGAGTACTCCACATGCTTGGCTGGAGAATCACAAGCAGCTGATGCAAATGATGTTCATAATTCTCTGTTGTGTGATGAACATAATGATTATTCACTTCTTGATAGTTTTGGACCCAATCTTGGCCCTTCTGTTGACTACACTCATAGCACTTGCCATTTACCAGAAGTGAATGGTAACACAACCTGTGGAATTTCAGAATTGGATAACTTGGAACTGGATAGTCCTCCAGACTTCCAACTTGCA...........................................................................................GATTTGCCGTTTGGTTCTCAAGAGAATATCTTTAGTTGGTTGGACCGGCTATAGAGATGATGGCAATGAGATAATGCTTTATGCATTCTCGGATGGAGAATATACTTCAACAAGATTGTGTTCTTGAACAGCTACAGGAATCTTTCTTCAATTTCAGTTTTCGTGGTTTCAACAAATCCTTATCAAAAAATGCTCATTTTCCCACCATTACTACAGCCCACAGAAGAAAAGAAAACAG-AATATTGCTATATCTAAAATGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286165" ref_strand="+" ref_description="SGN-E286165 [cLES-13-L18]">
      <seq>gaagatgaaatttaaggtgaatatgtggtttcaaaaatcttttaccaacagcagaagcaatctgtcaaggccaatgattgttgtgacaatgaggaagccagtgtgggagcgaatcaaactgggcctacaactcccaagacggttacacccaatccccctcgagatggagaaaccccttcctatgatgatattttagatgaatctttacccttctcacctgatcaggaagtggaagttgccaaagaaccagggcagccttctgatgctaaaattaagtgtgagatggagtactccacatgcttggctggagaatcacaagcagctgatgcaaatgatgttcataattctctgttgtgtgatgaacataatgattattcacttcttgatagttttggacccaatcttggcccttctgttgactacactcatagcacttgccatttaccagaagtgaatggtaacacaacctgtggaatttcagaattggataacttggaactggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="22242" stop="20980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21955" g_stop="21731" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21730" i_stop="21560" i_length="171">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21559" g_stop="21280" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="505" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E286165" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21955" e_stop="21731"/>
          <exon e_start="21559" e_stop="21280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGAAAAAGAAGGTGAATATGTGGTTTCAAAAATCTTTTACCAACAGCAGAAGCAATCTGTCAAGGCCAATGATTGTTGTGACAATGAGGAAGCCAGTGTGGGAGCGAATCAAACTGGGCCTACAACTCCCAAGACGGTTACACCCAATCCCCCTCGAGATGGAGAAACCCCTTCCTATGATGATATTTTAGATGAATCTTTACCCTTCTCACCTGATCAGGTAAAAACAATTGGATGATGCAGTTGCATCTTTGGCTGTTCTGTACATTATTTCTGTTTGCAAAATTGCATGTTTTCAACTCATGAATACATATTTCTCGTAGTTCTTTCTACCTATATGCATTTTTTTAACATAATTTTTTCGTACACTGATCTTTGTTTTGTTGTTTAGGAAGTGGAAGTTGCCAAAGAACCAGGGCAGCCTTCTGATGCTAAAATTAAGTGTGAGATGGAGTACTCCACATGCTTGGCTGGAGAATCACAAGCAGCTGATGCAAATGATGTTCATAATTCTCTGTTGTGTGATGAACATAATGATTATTCACTTCTTGATAGTTTTGGACCCAATCTTGGCCCTTCTGTTGACTACACTCATAGCACTTGCCATTTACCAGAAGTGAATGGTAACACAACCTGTGGAATTTCAGAATTGGATAACTTGGAACTGGATA</genome_strand>
        <mrna_strand>GAAGATGAAATTTAAGGTGAATATGTGGTTTCAAAAATCTTTTACCAACAGCAGAAGCAATCTGTCAAGGCCAATGATTGTTGTGACAATGAGGAAGCCAGTGTGGGAGCGAATCAAACTGGGCCTACAACTCCCAAGACGGTTACACCCAATCCCCCTCGAGATGGAGAAACCCCTTCCTATGATGATATTTTAGATGAATCTTTACCCTTCTCACCTGATCAG...........................................................................................................................................................................GAAGTGGAAGTTGCCAAAGAACCAGGGCAGCCTTCTGATGCTAAAATTAAGTGTGAGATGGAGTACTCCACATGCTTGGCTGGAGAATCACAAGCAGCTGATGCAAATGATGTTCATAATTCTCTGTTGTGTGATGAACATAATGATTATTCACTTCTTGATAGTTTTGGACCCAATCTTGGCCCTTCTGTTGACTACACTCATAGCACTTGCCATTTACCAGAAGTGAATGGTAACACAACCTGTGGAATTTCAGAATTGGATAACTTGGAACTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613812" ref_strand="+" ref_description="SGN-E613812 [63591]">
      <seq>ggagaaaggaggcaaaattcaggcaccataaaaccagagtttttctcttcttcgaatgtgtttaatagatgcgctgaaactcagattaaccgaattttcttcaaaaatcttgatttttttttcgatccttaatgggaagatcttggcttatcaatggcagaggacttgcgagtaaagtcaaaaatgctagtgcccctgctgcacatcaaatcaaagattgtggggcaaagcggcaatgcccaaactgcaactactctattgataacaaggatgtttctcatgaatggcctggtctacctgttggtgttaaatttgatccatctgacgctgagctcgtggagcatttagaagcaaagtgcggggtgggaaattcagagcaacacaaattcattgatgagttcatcccaacccttgatgttcacgaaggaatttgctatacccatcctgaaaatcttcctggtgcaaaaaaggatggaagtagcattcacttcttttatcgcattactaatgcatatgcaactggaaaaaggaagcgtagaaagattcatgatgaaaataatttgatgaaagaacatgtacgctggcacaagacgggaaagaccaaggttgttatggagaatggattccaaaagggatgtaagaaggtcatggtactctatcaaactattaaggggtcgaagcaggaaaagactaattgggtaatgcatcagtaccacctggggcctgatgaagatgaaaaagaaggtgaatatgtggttcaaaaatcttcaccagcagcagaagcaatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="24288" stop="21591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23988" g_stop="23849" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23848" i_stop="23016" i_length="833">
            <donor d_prob="0.909" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23015" g_stop="22883" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="272" r_length="133" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22882" i_stop="22686" i_length="197">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22685" g_stop="22499" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="459" r_length="187" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22498" i_stop="22228" i_length="271">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22227" g_stop="21891" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="791" r_length="332" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E613812" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23988" e_stop="23849"/>
          <exon e_start="23015" e_stop="22883"/>
          <exon e_start="22685" e_stop="22499"/>
          <exon e_start="22227" e_stop="21891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGGGGGCAAAATTCAGGCACCATAAAACCAGAGTTTTTTCTCTTCTTCGAATGTGTTAAATAGATACACTGAAACTCAGATTCACCGAATTTTCTTCAAAAATCTTGAAATTTTTTTCGATCCTTTATGGGAAGGTGAGGATTAATTTTTGTGATGAAACTTCAAAGTTTTGGTGTTCTTAGGCAAAAAAAAAGATTGATCTAGGTTTGATTGGGAATGATCAAAGATGATTTAAAAATTGAATCTTTAAACAATTATTCTGGAAAAAAATTCTATCTTTTCGGTAGCTTACGTTGTAAGATTTGTGTTTGCTACTGGGGATTATGCTGAATACTAGTGTAGTTTCTTAAGGATTTTGGGTTATCTGGGTTTAGATTTATTATTCGTTTTGGGGGCCATTGTGAATGGCGTTTGAGTTATTCTTCATCCGATTATTTAACGTATTTGAAAATGCTTATAGCATGTTCTGTGTTTACAATCGAAAATGTGAAATGTGTGCTTTAATTGGGTGATTGCTGGAAGTATCCATTAGTTCTAATTGCCCAAATTTTTTGATGGTCTCATGTTCTTGATCATCTGCCCAATATTGTCTAGGTTCAAAATTTGCTTGCAATGAATCATATCAAAACCTCATGTTGAAATTTGTCTATTTACCTGTTCAATATGTCAGTGTCATAGAAAGATTTGGGAAAGTTGGTCTCAGGTCTAAACTGATAGTGAAACCAGATGGATTATTGAATTTATCAAGAGTATTTACTGAACTTATAGTTAATTGTTATGTATTCTAGACGAATTACATTGGGTATGTTGTTCTGGTTGTTGTATTGTTAATTGTCAAGTATATTTCCTTTAGGCTTCAATCGAAGTTTTTGAATCTGTTGGAAGACATTGTTGTTCTTTTGTCAATTATATATGTCACCATAAGAAGATTTATAGTTCTAATCTGTTTCTTTTTTTATTGATCCAGGTCTTGGCTTATTAATGGCAGAGGGCTTGCAAGTAAAGTTAAAAATGCCAGTGCCCCTGCTGCTCATCAAATCAAAGATTGTGGGGCAAAGCGGCAATGCCCAAACTGCAACTACTCTATTGATAACAAAGATGTAAGCTAACAAGTGTTCATGCATAAGTTACTGACCTCTTGTAGTTTTCTTAACAGCTTCCTCAAACTGTTTTGTCTAGTTGAAAATTTCTCTTGTATAGAAAGTTCTTTTTTCCCCCGGTTCAAGATTAGGCCAACCAATAGTTGTAAATTAGCTGCTCAAAGCCTGCTTCAATATTCTACTGCTTTCTTATTCAGGTTTCTCATGAATGGCCTGGTCTACCTGTTGGTGTGAAATTTGATCCATCTGATGCTGAGCTCGTGGAGCATTTAGAAGCAAAGTGTGGGGTGGGAAATTCAGAACAACACAAATTCATTGATGAGTTCATCCCGACCCTTGAGGTTCACGAAGGAATTTGCTACACCCATCCTGAAAATCTTCCTGGTTTGTAGCACACCCAGTTCTTCAATAAACTAGTTAATGTTTGCTTTAACTGCATTAATCAAGTCAATAAGCTGTACTGGTGAAATAAATAGAGGGAAGGCTATCATCAGGAAAGGCTATTGTTGTTTTCAGGGTTGCATTTATCTAGAAATGAAAATGTAGCAAAAGTTAGTTGTTGTAAGGAGCATGTTTCCGTTTTTCTGGTTGAAACCGGACAACCATCTATATGTTGTGGCAGAATTTCATTCCTCAATCTCTTATTTTGCTTCAGGTTCAAAAAAGGATGGAAGTAGCATTCACTTCTTTTATCGCATTACTAATGCATATGCAACTGGTAAACGGAAGCGTAGAAAGATTCATGATGAAAATAATTTGATGAAAGAACATGTCCGCTGGCACAAGACTGGAAAGACCAAGGTTGTTATGGAGAATGGATTCCAAAAGGGATGCAAGAAGGTCATGGTTCTCTATCAAACTCTTAAGAAGGGGTCGAAGCAGGAAAAGACTAATTGGGTAATGCATCAGTACCACCTGGGCCCTGATGAAGATGAAAAAGAAGGTGAATATGTGGTTTCAAAAATCTTTTACCAACAGCAGAAGCAATCTGT</genome_strand>
        <mrna_strand>GGAGAAAGGAGGCAAAATTCAGGCACCATAAAACCAGAG-TTTTTCTCTTCTTCGAATGTGTTTAATAGATGCGCTGAAACTCAGATTAACCGAATTTTCTTCAAAAATCTTGATTTTTTTTTCGATCCTTAATGGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGCTTATCAATGGCAGAGGACTTGCGAGTAAAGTCAAAAATGCTAGTGCCCCTGCTGCACATCAAATCAAAGATTGTGGGGCAAAGCGGCAATGCCCAAACTGCAACTACTCTATTGATAACAAGGAT.....................................................................................................................................................................................................GTTTCTCATGAATGGCCTGGTCTACCTGTTGGTGTTAAATTTGATCCATCTGACGCTGAGCTCGTGGAGCATTTAGAAGCAAAGTGCGGGGTGGGAAATTCAGAGCAACACAAATTCATTGATGAGTTCATCCCAACCCTTGATGTTCACGAAGGAATTTGCTATACCCATCCTGAAAATCTTCCTG...............................................................................................................................................................................................................................................................................GTGCAAAAAAGGATGGAAGTAGCATTCACTTCTTTTATCGCATTACTAATGCATATGCAACTGGAAAAAGGAAGCGTAGAAAGATTCATGATGAAAATAATTTGATGAAAGAACATGTACGCTGGCACAAGACGGGAAAGACCAAGGTTGTTATGGAGAATGGATTCCAAAAGGGATGTAAGAAGGTCATGGTACTCTATCAAACTATT---AAGGGGTCGAAGCAGGAAAAGACTAATTGGGTAATGCATCAGTACCACCTGGGGCCTGATGAAGATGAAAAAGAAGGTGAATATGTGG-TTCAAAAATC-TTCACCAGCAGCAGAAGCAATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613783" ref_strand="+" ref_description="SGN-E613783 [63562]">
      <seq>ggagaaaggaggcaaaattcaggcaccataaaaccagagtttttctcttcttcgaatgtgtttaatagatgcgctgaaactcagattaaccgaattttcttcaaaaatcttgatttttttttcgatccttaatgggaagatcttggcttatcaatggcagaggacttgcgagtaaagtcaaaaatgctagtgcccctgctgcacatcaaatcaaagattgtggggcaaagcggcaatgcccaaactgcaactactctattgataacaaggatgtttctcatgaatggcctggtctacctgttggtgttaaatttgatccatctgacgctgagctcgtggagcatttagaagcaaagtgcggggtgggaaattcagagcaacacaaattcattgatgagttcatcccaacccttgatgttcacgaaggaatttgctatacccatcctgaaaatcttcctggtgcaaaaaaggatggaagtagcattcacttcttttatcgcattactaatgcatatgcaactggaaaaaggaagcgtagaaagattcatgatgaaaataatttgatgaaagaacatgtacgctggcacaagacgggaaagaccaaggttgttatggagaatggattccaaaagggatgtaagaaggtcatggtactctatcaaactattaaggggtcgaagcaggaaaagactaattgggtaatgcattcagtacccacctgggccctgatgaccatgaccacaagaaggtgaatatgtggtttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="24288" stop="21622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23988" g_stop="23849" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23848" i_stop="23016" i_length="833">
            <donor d_prob="0.909" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23015" g_stop="22883" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="272" r_length="133" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22882" i_stop="22686" i_length="197">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22685" g_stop="22499" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="459" r_length="187" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22498" i_stop="22228" i_length="271">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22227" g_stop="21922" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="766" r_length="307" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E613783" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23988" e_stop="23849"/>
          <exon e_start="23015" e_stop="22883"/>
          <exon e_start="22685" e_stop="22499"/>
          <exon e_start="22227" e_stop="21922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAAGGGGGCAAAATTCAGGCACCATAAAACCAGAGTTTTTTCTCTTCTTCGAATGTGTTAAATAGATACACTGAAACTCAGATTCACCGAATTTTCTTCAAAAATCTTGAAATTTTTTTCGATCCTTTATGGGAAGGTGAGGATTAATTTTTGTGATGAAACTTCAAAGTTTTGGTGTTCTTAGGCAAAAAAAAAGATTGATCTAGGTTTGATTGGGAATGATCAAAGATGATTTAAAAATTGAATCTTTAAACAATTATTCTGGAAAAAAATTCTATCTTTTCGGTAGCTTACGTTGTAAGATTTGTGTTTGCTACTGGGGATTATGCTGAATACTAGTGTAGTTTCTTAAGGATTTTGGGTTATCTGGGTTTAGATTTATTATTCGTTTTGGGGGCCATTGTGAATGGCGTTTGAGTTATTCTTCATCCGATTATTTAACGTATTTGAAAATGCTTATAGCATGTTCTGTGTTTACAATCGAAAATGTGAAATGTGTGCTTTAATTGGGTGATTGCTGGAAGTATCCATTAGTTCTAATTGCCCAAATTTTTTGATGGTCTCATGTTCTTGATCATCTGCCCAATATTGTCTAGGTTCAAAATTTGCTTGCAATGAATCATATCAAAACCTCATGTTGAAATTTGTCTATTTACCTGTTCAATATGTCAGTGTCATAGAAAGATTTGGGAAAGTTGGTCTCAGGTCTAAACTGATAGTGAAACCAGATGGATTATTGAATTTATCAAGAGTATTTACTGAACTTATAGTTAATTGTTATGTATTCTAGACGAATTACATTGGGTATGTTGTTCTGGTTGTTGTATTGTTAATTGTCAAGTATATTTCCTTTAGGCTTCAATCGAAGTTTTTGAATCTGTTGGAAGACATTGTTGTTCTTTTGTCAATTATATATGTCACCATAAGAAGATTTATAGTTCTAATCTGTTTCTTTTTTTATTGATCCAGGTCTTGGCTTATTAATGGCAGAGGGCTTGCAAGTAAAGTTAAAAATGCCAGTGCCCCTGCTGCTCATCAAATCAAAGATTGTGGGGCAAAGCGGCAATGCCCAAACTGCAACTACTCTATTGATAACAAAGATGTAAGCTAACAAGTGTTCATGCATAAGTTACTGACCTCTTGTAGTTTTCTTAACAGCTTCCTCAAACTGTTTTGTCTAGTTGAAAATTTCTCTTGTATAGAAAGTTCTTTTTTCCCCCGGTTCAAGATTAGGCCAACCAATAGTTGTAAATTAGCTGCTCAAAGCCTGCTTCAATATTCTACTGCTTTCTTATTCAGGTTTCTCATGAATGGCCTGGTCTACCTGTTGGTGTGAAATTTGATCCATCTGATGCTGAGCTCGTGGAGCATTTAGAAGCAAAGTGTGGGGTGGGAAATTCAGAACAACACAAATTCATTGATGAGTTCATCCCGACCCTTGAGGTTCACGAAGGAATTTGCTACACCCATCCTGAAAATCTTCCTGGTTTGTAGCACACCCAGTTCTTCAATAAACTAGTTAATGTTTGCTTTAACTGCATTAATCAAGTCAATAAGCTGTACTGGTGAAATAAATAGAGGGAAGGCTATCATCAGGAAAGGCTATTGTTGTTTTCAGGGTTGCATTTATCTAGAAATGAAAATGTAGCAAAAGTTAGTTGTTGTAAGGAGCATGTTTCCGTTTTTCTGGTTGAAACCGGACAACCATCTATATGTTGTGGCAGAATTTCATTCCTCAATCTCTTATTTTGCTTCAGGTTCAAAAAAGGATGGAAGTAGCATTCACTTCTTTTATCGCATTACTAATGCATATGCAACTGGTAAACGGAAGCGTAGAAAGATTCATGATGAAAATAATTTGATGAAAGAACATGTCCGCTGGCACAAGACTGGAAAGACCAAGGTTGTTATGGAGAATGGATTCCAAAAGGGATGCAAGAAGGTCATGGTTCTCTATCAAACTCTTAAGAAGGGGTCGAAGCAGGAAAAGACTAATTGGGTAATGCA-TCAGTA-CCACCTGGGCCCTGATGAAGATGA--AAAAGAAGGTGAATATGTGGTTTCAA</genome_strand>
        <mrna_strand>GGAGAAAGGAGGCAAAATTCAGGCACCATAAAACCAGAG-TTTTTCTCTTCTTCGAATGTGTTTAATAGATGCGCTGAAACTCAGATTAACCGAATTTTCTTCAAAAATCTTGATTTTTTTTTCGATCCTTAATGGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGCTTATCAATGGCAGAGGACTTGCGAGTAAAGTCAAAAATGCTAGTGCCCCTGCTGCACATCAAATCAAAGATTGTGGGGCAAAGCGGCAATGCCCAAACTGCAACTACTCTATTGATAACAAGGAT.....................................................................................................................................................................................................GTTTCTCATGAATGGCCTGGTCTACCTGTTGGTGTTAAATTTGATCCATCTGACGCTGAGCTCGTGGAGCATTTAGAAGCAAAGTGCGGGGTGGGAAATTCAGAGCAACACAAATTCATTGATGAGTTCATCCCAACCCTTGATGTTCACGAAGGAATTTGCTATACCCATCCTGAAAATCTTCCTG...............................................................................................................................................................................................................................................................................GTGCAAAAAAGGATGGAAGTAGCATTCACTTCTTTTATCGCATTACTAATGCATATGCAACTGGAAAAAGGAAGCGTAGAAAGATTCATGATGAAAATAATTTGATGAAAGAACATGTACGCTGGCACAAGACGGGAAAGACCAAGGTTGTTATGGAGAATGGATTCCAAAAGGGATGTAAGAAGGTCATGGTACTCTATCAAACTATT---AAGGGGTCGAAGCAGGAAAAGACTAATTGGGTAATGCATTCAGTACCCACCTGGGCCCTGATGACCATGACCACAAGAAGGTGAATATGTGGTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559649" ref_strand="+" ref_description="SGN-E559649 [19178]">
      <seq>gcacgaggctcagattacagaattttcttcaaaaatcttgcaatttttttctgatccttaatgggaagatcttggcttatcaatggcagaggacttgcgagtaaagtaaaaaatgctagttcccctggctgcacatcaaatcaaagattgtggggcaaagcggcaatgcccaaactgcaactactctattgataacaaggatgtttctcatgaatggcctggtctacctgttggtgttaaatttgatccatctgatgctgagctcgtggagcatttagaagcaaagtgcgggataggaaattcagagcaacacaaattcattgatgagttcatcccgacccttgatgttcacgaaggaatttgctatacccatcctgaaaatcttcctggtgcaaaaaaggatggaagtagcattcacttcttttatcgcattactaatgcatatgcaactggtaaaaggaagcgtagaaagattcatgatgaaaataacttgatgaaagaacatgtacgctggcacaagacgggaaagaccaaggttgttatggagaatggattccaaaagggatgtaagaaggtcatggtactctatcaaactattaacaaggggtcgaagcaggagaagactaattgggtaatgcatcagtacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="24216" stop="21669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23917" g_stop="23849" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23848" i_stop="23016" i_length="833">
            <donor d_prob="0.909" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23015" g_stop="22883" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="202" r_length="134" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22882" i_stop="22686" i_length="197">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22685" g_stop="22499" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="389" r_length="187" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22498" i_stop="22228" i_length="271">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22227" g_stop="21969" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="648" r_length="259" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E559649" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23917" e_stop="23849"/>
          <exon e_start="23015" e_stop="22883"/>
          <exon e_start="22685" e_stop="22499"/>
          <exon e_start="22227" e_stop="21969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAAACTCAGATTCACCGAATTTTCTTCAAAAATCTTGAAATTTTTTTC-GATCCTTTATGGGAAGGTGAGGATTAATTTTTGTGATGAAACTTCAAAGTTTTGGTGTTCTTAGGCAAAAAAAAAGATTGATCTAGGTTTGATTGGGAATGATCAAAGATGATTTAAAAATTGAATCTTTAAACAATTATTCTGGAAAAAAATTCTATCTTTTCGGTAGCTTACGTTGTAAGATTTGTGTTTGCTACTGGGGATTATGCTGAATACTAGTGTAGTTTCTTAAGGATTTTGGGTTATCTGGGTTTAGATTTATTATTCGTTTTGGGGGCCATTGTGAATGGCGTTTGAGTTATTCTTCATCCGATTATTTAACGTATTTGAAAATGCTTATAGCATGTTCTGTGTTTACAATCGAAAATGTGAAATGTGTGCTTTAATTGGGTGATTGCTGGAAGTATCCATTAGTTCTAATTGCCCAAATTTTTTGATGGTCTCATGTTCTTGATCATCTGCCCAATATTGTCTAGGTTCAAAATTTGCTTGCAATGAATCATATCAAAACCTCATGTTGAAATTTGTCTATTTACCTGTTCAATATGTCAGTGTCATAGAAAGATTTGGGAAAGTTGGTCTCAGGTCTAAACTGATAGTGAAACCAGATGGATTATTGAATTTATCAAGAGTATTTACTGAACTTATAGTTAATTGTTATGTATTCTAGACGAATTACATTGGGTATGTTGTTCTGGTTGTTGTATTGTTAATTGTCAAGTATATTTCCTTTAGGCTTCAATCGAAGTTTTTGAATCTGTTGGAAGACATTGTTGTTCTTTTGTCAATTATATATGTCACCATAAGAAGATTTATAGTTCTAATCTGTTTCTTTTTTTATTGATCCAGGTCTTGGCTTATTAATGGCAGAGGGCTTGCAAGTAAAGTTAAAAATGCCAGTGCCCCT-GCTGCTCATCAAATCAAAGATTGTGGGGCAAAGCGGCAATGCCCAAACTGCAACTACTCTATTGATAACAAAGATGTAAGCTAACAAGTGTTCATGCATAAGTTACTGACCTCTTGTAGTTTTCTTAACAGCTTCCTCAAACTGTTTTGTCTAGTTGAAAATTTCTCTTGTATAGAAAGTTCTTTTTTCCCCCGGTTCAAGATTAGGCCAACCAATAGTTGTAAATTAGCTGCTCAAAGCCTGCTTCAATATTCTACTGCTTTCTTATTCAGGTTTCTCATGAATGGCCTGGTCTACCTGTTGGTGTGAAATTTGATCCATCTGATGCTGAGCTCGTGGAGCATTTAGAAGCAAAGTGTGGGGTGGGAAATTCAGAACAACACAAATTCATTGATGAGTTCATCCCGACCCTTGAGGTTCACGAAGGAATTTGCTACACCCATCCTGAAAATCTTCCTGGTTTGTAGCACACCCAGTTCTTCAATAAACTAGTTAATGTTTGCTTTAACTGCATTAATCAAGTCAATAAGCTGTACTGGTGAAATAAATAGAGGGAAGGCTATCATCAGGAAAGGCTATTGTTGTTTTCAGGGTTGCATTTATCTAGAAATGAAAATGTAGCAAAAGTTAGTTGTTGTAAGGAGCATGTTTCCGTTTTTCTGGTTGAAACCGGACAACCATCTATATGTTGTGGCAGAATTTCATTCCTCAATCTCTTATTTTGCTTCAGGTTCAAAAAAGGATGGAAGTAGCATTCACTTCTTTTATCGCATTACTAATGCATATGCAACTGGTAAACGGAAGCGTAGAAAGATTCATGATGAAAATAATTTGATGAAAGAACATGTCCGCTGGCACAAGACTGGAAAGACCAAGGTTGTTATGGAGAATGGATTCCAAAAGGGATGCAAGAAGGTCATGGTTCTCTATCAAACTCTTAAGAAGGGGTCGAAGCAGGAAAAGACTAATTGGGTAATGCATCAGTACCA</genome_strand>
        <mrna_strand>GCAC-GAGGCTCAGATT-ACAGAATTTTCTTCAAAAATCTTGCAATTTTTTTCTGATCCTTAATGGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGCTTATCAATGGCAGAGGACTTGCGAGTAAAGTAAAAAATGCTAGTTCCCCTGGCTGCACATCAAATCAAAGATTGTGGGGCAAAGCGGCAATGCCCAAACTGCAACTACTCTATTGATAACAAGGAT.....................................................................................................................................................................................................GTTTCTCATGAATGGCCTGGTCTACCTGTTGGTGTTAAATTTGATCCATCTGATGCTGAGCTCGTGGAGCATTTAGAAGCAAAGTGCGGGATAGGAAATTCAGAGCAACACAAATTCATTGATGAGTTCATCCCGACCCTTGATGTTCACGAAGGAATTTGCTATACCCATCCTGAAAATCTTCCTG...............................................................................................................................................................................................................................................................................GTGCAAAAAAGGATGGAAGTAGCATTCACTTCTTTTATCGCATTACTAATGCATATGCAACTGGTAAAAGGAAGCGTAGAAAGATTCATGATGAAAATAACTTGATGAAAGAACATGTACGCTGGCACAAGACGGGAAAGACCAAGGTTGTTATGGAGAATGGATTCCAAAAGGGATGTAAGAAGGTCATGGTACTCTATCAAACTATTAACAAGGGGTCGAAGCAGGAGAAGACTAATTGGGTAATGCATCAGTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696292" ref_strand="+" ref_description="SGN-E696292 [LH_Ea08M02](-)">
      <seq>ctttaagacacggcgagaagaagcattataatcacaaagtagatgcctacagttttgcaatcgttctgtgggaactcgtacataacaaattaccatttgagggcatgtctaatttgcaggctgcttatgcagctgcttttaagaatgtgagaccaagtgcagatgatctccccgaggatttggcagtaattgtaacttcgtgttggaaagaggatccaaacactcgtcccaacttcactcagataatacagatgcttcttcattttctctcttcagtttcccctccggaaccagtaataccagctaggattttcacttccgagaatcatgtgttaccaccggagtctccaggtaccagctccttaatgtccaagcgtgatgactcggttgagacccctaaaacacccatggagaatcagccaagaggtttcttcttctgttttaaccaatgctactgatccccaagggaaaagtttgttgattacctagaaaatacgcggagatgagctatcttattatatatagtaagctcacaaaatgtttagcccagatatgtcactagataacttagcttttggtctttcttccacataagataaaaaggtacacttttgagttttagccacggtaattcaaaggtgaaggaagttgttgcaggaacgtgttctgactaattgtgaggagttgggttgatgtgatgtatattatagttgtaaaaataaggtccatccaaagacctgtactccaatattttaatcgttttgacgcattatatgaactcattaatgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="30525" stop="28650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30225" g_stop="30083" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30082" i_stop="29581" i_length="502">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29580" g_stop="28950" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="754" r_length="611" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="790" polyA_stop="803"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E696292" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30225" e_stop="30083"/>
          <exon e_start="29580" e_stop="28950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAAGACACGGCGAGAAGAAGCATTATAATCATAAAGTAGATGCCTACAGTTTTGCGATCGTTCTGTGGGAACTCGTACATAACAAATTACCATTTGAGGGCATGTCTAATTTACAGGCTGCTTATGCAGCTGCTTTTAAGGTAAATATCTTCTCTCCATTGGTCTTTGTCATCTAGTTATTTCAATATCATAATTTTAATTTTCCTAAACTAAAAGGATGAGAGAGGTTAAGATGTGATAGCAATTAGTTGGTTCACATCACACTGCCTCCTTTACAAAGGGCACATCAAAGACTAAATTGGACCACTGGGACACTAGTACAACTTTGGCTGAATGCCCTTTAATTTACCAACGTTTTTTACACAGCTGAAAATAGTTGTTTTTGTCTCAAATCACCTAACTTTTGACTGAAGAACACAAATACGTGGATAATTACAATGCAGAAACTTGAGACCCAGGGATTTGGTCTAGCGGTAAGAGCGTGTGTAGCACATGATGTGGGGACGAAAGCCTATATTTAAGTGGAAAATGGTACGAGAAATAAAATAAAAAAGGAACTTGGGGTCCAGAAAGAAGTTTAGTATAACAATTAATATCTGTTTAGTTTCGCTAAACCAAGTTTATACCTTGTGTGTTTTTCAGAATGTGAGACCAAGTGCAGATGATCTCCCCGAGGATTTGGCAGTAATTGTAACTTCGTGTTGGAAAGAGGATCCAAACACTCGTCCCAACTTCACTCAGATAATACAGATGCTTCTTCATTTTCTCTCTTCAGTTTCCCCTCCGGAACCAGTAATACCAGCTAGGATTTTCACTTCAGAGAATCATGTATTACCACCGGAGTCTCCAGGTACCAGCTCGTTAATGTCCAAGCGTGATGACTCGGTTGAGACCCCTAAAACACCCATGGAGAATCAGCCAAGAGGTTTCTTCTTCTGTTTTAACCAATGCTACTGATCCCCAAGGGAAAAGTTTGTTAATTCTCTAGAAAATACTCGGAGTTGAGCTATCTTATTATACAATAGTAAGCTCACAAAATGTTTAGCCCAGATATGTCACTAGATAACTTAGCTTTTGGTCTTTCTTCCACATAAGATAAAAAGGTACACTTTTGAGTTTTAGCCATGGTAATTCAAAGGTGAAGGACGTTGTTGCAGGAAGATGCATGATCTAGACTCGCGTTCTGACTTAATTGTGAGGAGTTGGGTTGCTGTGATGTATATTATAGTTGTAAAAAATAAGGTCCATCCAAAGACCTGTACTCCTATATTTT</genome_strand>
        <mrna_strand>CTTTAAGACACGGCGAGAAGAAGCATTATAATCACAAAGTAGATGCCTACAGTTTTGCAATCGTTCTGTGGGAACTCGTACATAACAAATTACCATTTGAGGGCATGTCTAATTTGCAGGCTGCTTATGCAGCTGCTTTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGAGACCAAGTGCAGATGATCTCCCCGAGGATTTGGCAGTAATTGTAACTTCGTGTTGGAAAGAGGATCCAAACACTCGTCCCAACTTCACTCAGATAATACAGATGCTTCTTCATTTTCTCTCTTCAGTTTCCCCTCCGGAACCAGTAATACCAGCTAGGATTTTCACTTCCGAGAATCATGTGTTACCACCGGAGTCTCCAGGTACCAGCTCCTTAATGTCCAAGCGTGATGACTCGGTTGAGACCCCTAAAACACCCATGGAGAATCAGCCAAGAGGTTTCTTCTTCTGTTTTAACCAATGCTACTGATCCCCAAGGGAAAAGTTTGTTGATTACCTAGAAAATACGCGGAGATGAGCTATCTTATTATA-TATAGTAAGCTCACAAAATGTTTAGCCCAGATATGTCACTAGATAACTTAGCTTTTGGTCTTTCTTCCACATAAGATAAAAAGGTACACTTTTGAGTTTTAGCCACGGTAATTCAAAGGTGAAGGAAGTTGTTGC----AG--G-A--A-C--G--T---GTTCTGAC-TAATTGTGAGGAGTTGGGTTGATGTGATGTATATTATAGTTGT-AAAAATAAGGTCCATCCAAAGACCTGTACTCCAATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228363" ref_strand="+" ref_description="SGN-E228363 [cLED-3-D15]">
      <seq>tggaacctatcgctggatggctccagagctctacagcacggtcactttaagacacggcgagaagaagcattataatcataaagtagatgcctacagttttgcgatcgttctgtgggaactcgtacataacaaattaccatttgagggcatgtctaatttacaggctgcttatgcagctgcttttaagaatgtgagaccaagtgcagatgatctccccgaggatttggcagtaattgtaacttcgtgttggaaagaggatccaaacactcgtcccaacttcactcagataatacagatgcttcttcattttctctcttcagtttcccctccggaaccagtaataccagctaggattttcacttcagagaatcatgtattaccaccggagtctccaggtaccagctcgttaatgtccaagcgtgatgactcggttgagacccctaaaacacccatggagaatcagccaagaggtttcttcttctgttttaaccaatgctactgatccccaagggaaaagtttgttaattctctagaaaatactcggagttgagctatcttattatacaatagtaagctcacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="30670" stop="28885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30370" g_stop="30343" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30342" i_stop="30242" i_length="101">
            <donor d_prob="0.905" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30241" g_stop="30083" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="187" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30082" i_stop="29581" i_length="502">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29580" g_stop="29185" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="583" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E228363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30370" e_stop="30343"/>
          <exon e_start="30241" e_stop="30083"/>
          <exon e_start="29580" e_stop="29185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACCTATCGCTGGATGGCTCCAGAGGTTGATTCTTGAATTCCCGTGCTTATTAATATATTCTCCGTTCCCTTTCTCTTCTCCTATGGCTATATAGTGCTGACTTATCACTCTCCTTTTTGTGGCAGCTCTACAGCACGGTCACTTTAAGACACGGCGAGAAGAAGCATTATAATCATAAAGTAGATGCCTACAGTTTTGCGATCGTTCTGTGGGAACTCGTACATAACAAATTACCATTTGAGGGCATGTCTAATTTACAGGCTGCTTATGCAGCTGCTTTTAAGGTAAATATCTTCTCTCCATTGGTCTTTGTCATCTAGTTATTTCAATATCATAATTTTAATTTTCCTAAACTAAAAGGATGAGAGAGGTTAAGATGTGATAGCAATTAGTTGGTTCACATCACACTGCCTCCTTTACAAAGGGCACATCAAAGACTAAATTGGACCACTGGGACACTAGTACAACTTTGGCTGAATGCCCTTTAATTTACCAACGTTTTTTACACAGCTGAAAATAGTTGTTTTTGTCTCAAATCACCTAACTTTTGACTGAAGAACACAAATACGTGGATAATTACAATGCAGAAACTTGAGACCCAGGGATTTGGTCTAGCGGTAAGAGCGTGTGTAGCACATGATGTGGGGACGAAAGCCTATATTTAAGTGGAAAATGGTACGAGAAATAAAATAAAAAAGGAACTTGGGGTCCAGAAAGAAGTTTAGTATAACAATTAATATCTGTTTAGTTTCGCTAAACCAAGTTTATACCTTGTGTGTTTTTCAGAATGTGAGACCAAGTGCAGATGATCTCCCCGAGGATTTGGCAGTAATTGTAACTTCGTGTTGGAAAGAGGATCCAAACACTCGTCCCAACTTCACTCAGATAATACAGATGCTTCTTCATTTTCTCTCTTCAGTTTCCCCTCCGGAACCAGTAATACCAGCTAGGATTTTCACTTCAGAGAATCATGTATTACCACCGGAGTCTCCAGGTACCAGCTCGTTAATGTCCAAGCGTGATGACTCGGTTGAGACCCCTAAAACACCCATGGAGAATCAGCCAAGAGGTTTCTTCTTCTGTTTTAACCAATGCTACTGATCCCCAAGGGAAAAGTTTGTTAATTCTCTAGAAAATACTCGGAGTTGAGCTATCTTATTATACAATAGTAAGCTCACAAAA</genome_strand>
        <mrna_strand>TGGAACCTATCGCTGGATGGCTCCAGAG.....................................................................................................CTCTACAGCACGGTCACTTTAAGACACGGCGAGAAGAAGCATTATAATCATAAAGTAGATGCCTACAGTTTTGCGATCGTTCTGTGGGAACTCGTACATAACAAATTACCATTTGAGGGCATGTCTAATTTACAGGCTGCTTATGCAGCTGCTTTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGAGACCAAGTGCAGATGATCTCCCCGAGGATTTGGCAGTAATTGTAACTTCGTGTTGGAAAGAGGATCCAAACACTCGTCCCAACTTCACTCAGATAATACAGATGCTTCTTCATTTTCTCTCTTCAGTTTCCCCTCCGGAACCAGTAATACCAGCTAGGATTTTCACTTCAGAGAATCATGTATTACCACCGGAGTCTCCAGGTACCAGCTCGTTAATGTCCAAGCGTGATGACTCGGTTGAGACCCCTAAAACACCCATGGAGAATCAGCCAAGAGGTTTCTTCTTCTGTTTTAACCAATGCTACTGATCCCCAAGGGAAAAGTTTGTTAATTCTCTAGAAAATACTCGGAGTTGAGCTATCTTATTATACAATAGTAAGCTCACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692452" ref_strand="+" ref_description="SGN-E692452 [LH_Ea08M02]">
      <seq>tagagttcacacaagaacttagtgaagttcataggagcttgcaaggagcctgtcatggtcatagtaactgaacttcttctcgggggtacgctgaggaaatacttgctgaacctgaggccaaggtgcttggatactggtgttgctattagatttgcccttgatatagcccgtgcaatggagtgcttgcactctcatggtatcattcatcgcgacctaaaacctgagaacttgcttttgactgcggaccacaaaactgtcaaacttgcggattttggtttggcaagagaagaatcattgacagaaatgatgactgctgaaactggaacctatcgctggatggctccagagctctacagcacggtcactttaagacacggcgagaagaagcattataatcacaaagtagatgcctacagttttgcaatcgttctgtgggaactcgtacataacaaattaccatttgagggcatgtctaatttgcaggctgcttatgcagctgcttttaagaatgtgagaccaagtgcagatgatctccccgaggatttggcagtaattgtaacttcgtgttggaaagaggatccaaacactcgtcccaacttcactcagataatacagatgcttcttcattttctctcttcagtttcccctccggaaccagtaataccagctaggattttcacttccgagaatcatgtgttaccaccggagtctccaggtaccagctccttaatgtccaagcgtgatgactcggttgagacccctaaaacacccatggagaatcagccaagaggtttcttcttctgttttaaccaatgctactgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="32160" stop="28963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31861" g_stop="31834" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31833" i_stop="31719" i_length="115">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31718" g_stop="31523" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="223" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31522" i_stop="30468" i_length="1055">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30467" g_stop="30343" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="348" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30342" i_stop="30242" i_length="101">
            <donor d_prob="0.905" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30241" g_stop="30083" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="507" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30082" i_stop="29581" i_length="502">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29580" g_stop="29263" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="825" r_length="318" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E692452" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31861" e_stop="31834"/>
          <exon e_start="31718" e_stop="31523"/>
          <exon e_start="30467" e_stop="30343"/>
          <exon e_start="30241" e_stop="30083"/>
          <exon e_start="29580" e_stop="29263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTTCAGCACAAGAACTTAGTGAAGGTTGTTTTTAAGTCCCAAACTTGTGTTTGGGTATGATCTATTTGATGAGTTGTTAAGACGGCTAAATGAATTGCTCACATTGGTTATTGGTTTTCATTTTATTTTTCATTTACAGTTCATAGGAGCTTGCAAGGAGCCTGTCATGGTCATAGTAACTGAACTTCTTCTCGGGGGGACGCTGAGGAAATACTTGCTGAACCTGAGGCCAAGGTGCTTGGATACTGGTGTCGCTATTAGATTTGCCCTTGATATAGCCCGTGCAATGGAGTGCTTGCACTCTCATGGTATCATTCATCGCGACCTAAAACCTGGTACTAATACGTCTCTTTCACTGGTTTTTTTTTATGTTACATATTTTTAAATTCAGACATTTCAACATCCATTTGATCTGGTCTGAAATCACCACTGATCTCTTAACCTTTATATGGTCTTGATCTCTAGTAAATGTGTTTCAATGGTCACATGCTTCAATATGGTACTAGAGCAGGCAAAGGTCCTGGGATGGAATCTCACCGTCGCCTTTTATTGAATAGAATTTTCACGTGCTCGCCCCATGAAAAAAGAATCAAGCTCGCACGTGAAGGGACGTGTTTAAAATATAATTGAAAAAATAAGTGTGTTCTCTCTATAACAACTTAAGCTTATAAATGAGACGGTCACACATCTCAATAGCCCCTGTATGGTAAAAACATTACTGGTTAAGTAATTTCATCTGGCATATGGTTCCAGATCACTGTTCCTATTATTGTCTGTGGGTTAGTAGAACAGATAAGTTAATAATTGATAGTACTCTAGAGATGCTCTCATTAGTGAAATCACATGGAACTAGATTCTTGACAATATTACCAGTACATGGTTGGTAGGAGCAGGTGAATACATAAGAAACTTTAACTGGAATAAATTCCCCTGAAAGTGCTGCAGAGTAGATGCTTACTCATCATCCTTTTTAATAAAGTGGTCGAGAAAATTGATTTTTTTTTCTTTTGTTTTCTTCTTTCAAGGTTAGAAAATTTTGAGCTCCTAAATAAAATGATAAGATCATTTTAGTTTCTACTACAAAATTGAGATGCATAACGATTTTTAGGTATTTTAATTTCTTTTTCTTGGATGAAGTTATGAGTTATATACAAAGGCATCAAGAAGATGCAAAATTACAGTTAATGTCAGCAATTATGATTGTTGTCTGCTTTGGCCTGGTAGTGTAACTTATACTTGTCAAGGTTTAGCAATGATTTCAAACTTTACAAGTCTTCTCTGCTAATCGAATGGTGTTGACAACATTTATGGATATTGTTATTCCTTTAAAAGTTACAAGGCTGTTAGTATCATTTTTTCTGATTTGGGTTCTGTTTGCATTTACTTCCAGAGAACTTGCTTTTGACTGCGGACCACAAAACTGTCAAACTTGCGGATTTTGGTTTGGCAAGAGAAGAATCATTGACAGAGATGATGACTGCTGAAACTGGAACCTATCGCTGGATGGCTCCAGAGGTTGATTCTTGAATTCCCGTGCTTATTAATATATTCTCCGTTCCCTTTCTCTTCTCCTATGGCTATATAGTGCTGACTTATCACTCTCCTTTTTGTGGCAGCTCTACAGCACGGTCACTTTAAGACACGGCGAGAAGAAGCATTATAATCATAAAGTAGATGCCTACAGTTTTGCGATCGTTCTGTGGGAACTCGTACATAACAAATTACCATTTGAGGGCATGTCTAATTTACAGGCTGCTTATGCAGCTGCTTTTAAGGTAAATATCTTCTCTCCATTGGTCTTTGTCATCTAGTTATTTCAATATCATAATTTTAATTTTCCTAAACTAAAAGGATGAGAGAGGTTAAGATGTGATAGCAATTAGTTGGTTCACATCACACTGCCTCCTTTACAAAGGGCACATCAAAGACTAAATTGGACCACTGGGACACTAGTACAACTTTGGCTGAATGCCCTTTAATTTACCAACGTTTTTTACACAGCTGAAAATAGTTGTTTTTGTCTCAAATCACCTAACTTTTGACTGAAGAACACAAATACGTGGATAATTACAATGCAGAAACTTGAGACCCAGGGATTTGGTCTAGCGGTAAGAGCGTGTGTAGCACATGATGTGGGGACGAAAGCCTATATTTAAGTGGAAAATGGTACGAGAAATAAAATAAAAAAGGAACTTGGGGTCCAGAAAGAAGTTTAGTATAACAATTAATATCTGTTTAGTTTCGCTAAACCAAGTTTATACCTTGTGTGTTTTTCAGAATGTGAGACCAAGTGCAGATGATCTCCCCGAGGATTTGGCAGTAATTGTAACTTCGTGTTGGAAAGAGGATCCAAACACTCGTCCCAACTTCACTCAGATAATACAGATGCTTCTTCATTTTCTCTCTTCAGTTTCCCCTCCGGAACCAGTAATACCAGCTAGGATTTTCACTTCAGAGAATCATGTATTACCACCGGAGTCTCCAGGTACCAGCTCGTTAATGTCCAAGCGTGATGACTCGGTTGAGACCCCTAAAACACCCATGGAGAATCAGCCAAGAGGTTTCTTCTTCTGTTTTAACCAATGCTACTGATCC</genome_strand>
        <mrna_strand>TAGAGTTCA-CACAAGAACTTAGTGAAG...................................................................................................................TTCATAGGAGCTTGCAAGGAGCCTGTCATGGTCATAGTAACTGAACTTCTTCTCGGGGGTACGCTGAGGAAATACTTGCTGAACCTGAGGCCAAGGTGCTTGGATACTGGTGTTGCTATTAGATTTGCCCTTGATATAGCCCGTGCAATGGAGTGCTTGCACTCTCATGGTATCATTCATCGCGACCTAAAACCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGCTTTTGACTGCGGACCACAAAACTGTCAAACTTGCGGATTTTGGTTTGGCAAGAGAAGAATCATTGACAGAAATGATGACTGCTGAAACTGGAACCTATCGCTGGATGGCTCCAGAG.....................................................................................................CTCTACAGCACGGTCACTTTAAGACACGGCGAGAAGAAGCATTATAATCACAAAGTAGATGCCTACAGTTTTGCAATCGTTCTGTGGGAACTCGTACATAACAAATTACCATTTGAGGGCATGTCTAATTTGCAGGCTGCTTATGCAGCTGCTTTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGAGACCAAGTGCAGATGATCTCCCCGAGGATTTGGCAGTAATTGTAACTTCGTGTTGGAAAGAGGATCCAAACACTCGTCCCAACTTCACTCAGATAATACAGATGCTTCTTCATTTTCTCTCTTCAGTTTCCCCTCCGGAACCAGTAATACCAGCTAGGATTTTCACTTCCGAGAATCATGTGTTACCACCGGAGTCTCCAGGTACCAGCTCCTTAATGTCCAAGCGTGATGACTCGGTTGAGACCCCTAAAACACCCATGGAGAATCAGCCAAGAGGTTTCTTCTTCTGTTTTAACCAATGCTACTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320220" ref_strand="+" ref_description="SGN-E320220 [cTOB-21-E6]">
      <seq>ttatctttcctcttattctactcactcttcaccttatttatctctcttttttcttctcctcctcctgatagcctcaattgatccaccaaccaaaccagctgatctacttcttctgaactttttatttttcaattgaaccagtaggaatttctggggtttcttgtttgtggggttcatttttctcttgttttaaacacaagggcatgttgtagatttgtttctggtttgtgggtctatgagttttctggttcttggtcataaagtcttgaactttttttgctgcttcaaatgctaggtgaattgttattaagtgtttcgaatttggtagttaaatagatgtgctactagttcattcttgaagttattatagggggagagtatttggggtctggaaaatgggatctgctaatgggttttactccggagaagaagagttcaatttggaggcgaaatggttaattgatccgaagcttctgttcgttggtcctaagattggagagggtgctcatgccaaagtgtatgagggaaaatacagaaaccagaatgtagcaataaagattgtgcataaaggggagacacctgaggagattgccaagagggaatctcgttttggaagggaggttgctatgttatccagagttcagcacaagaacttagtgaagttcatangagcttgcaaggagcctgtcatggtcatagtaactgaactttctctcggggggacgctgangaaatacttgctgaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="33309" stop="31333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33009" g_stop="32481" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32480" i_stop="31967" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31966" g_stop="31834" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="662" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31833" i_stop="31719" i_length="115">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31718" g_stop="31633" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="748" r_length="86" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E320220" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33009" e_stop="32481"/>
          <exon e_start="31966" e_stop="31834"/>
          <exon e_start="31718" e_stop="31633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTTCCTCTTATTCTACTCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAAGTAAGTTTACTTTCTCTGTTAGTAAAACTATGTATTTGACTGATCTGTAAGAGCCGGACTCAGTTTGTTGGATCACACTGGGTATGTTGTTGTTGTTGTACTGATTTGTAAGTGTTGTTTGGTTATTTGAACTTCTGAACTAATACGGCTAGATTCTGTAGGTAGGGCATTACTGTTTGATTTAATTCAGCTAGTTCAATGGTTTAATCTTAGGAAAATGTTTGAAGAACTGACAGTAAATAGTCGCTAAAGTTTCCGTTAGATTTATAGTATGTGTATAAGGGTGTATAATCAGAGTATAGTCTATGTATACTGCTCAAAAAATAAACAAGTGAATTCGACTGGCTATTTGTGAAAAAATCCGAAGTGTTTTGCTAAAAAGATATTGTTCTTGATTCTGAAGTTACGGTATTTAAAAGTATGTGCTAGTTTGTTAAATTAGTAAAGCCTAAATGTGTGTCTTGATGCAGCTTTGTGCTTCTTTAGTTATACTTTTTGGTTGGGTTCTTGTCAGATACAGAAACCAGAATGTAGCAATAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAGGGAATCTCGTTTTGGAAGGGAGGTTGCTATGTTATCCAGAGTTCAGCACAAGAACTTAGTGAAGGTTGTTTTTAAGTCCCAAACTTGTGTTTGGGTATGATCTATTTGATGAGTTGTTAAGACGGCTAAATGAATTGCTCACATTGGTTATTGGTTTTCATTTTATTTTTCATTTACAGTTCATAGGAGCTTGCAAGGAGCCTGTCATGGTCATAGTAACTGAACTTCTTCTCGGGGGGACGCTGAGGAAATACTTGCTGAACCT</genome_strand>
        <mrna_strand>TTATCTTTCCTCTTATTCTACTCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGAAACCAGAATGTAGCAATAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAGGGAATCTCGTTTTGGAAGGGAGGTTGCTATGTTATCCAGAGTTCAGCACAAGAACTTAGTGAAG...................................................................................................................TTCATANGAGCTTGCAAGGAGCCTGTCATGGTCATAGTAACTGAACTTTCTCTCGGGGGGACGCTGANGAAATACTTGCTGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249826" ref_strand="+" ref_description="SGN-E249826 [cLEF-57-A10]">
      <seq>ttgttttaaacacaaaggcatgttgtagatttgtttctggtttgtgggtctatgagttttctggttcttggtcataaagtcttgaactttttttgctgcttcaaatgctaggtgaattgttattaagtgtttcgaatttggtagttaaatagatgtgctactagttcattcttgaagttattatagggggagagtatttggggtctggaaaatgggatctgctaatgggttttactccggagaagaagagttcaatttggaggcgaaatggttaattgatccgaagcttctgttcgttggtcctaagattggagagggtgctcatgccaaagtgtatgagggaaaatacagaaaccagaatgtagcaataaagattgtgcataaaggggagacacctgaggagattgccaagagggaatctcgttttggaaaggaggttgctatgttatccacagttcagcacaagaacttagtgaagttcatatgagcttgcaaggagcctgtcatggtcatagtaactgaacttcttctcgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="33125" stop="31359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32825" g_stop="32481" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32480" i_stop="31967" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31966" g_stop="31834" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="478" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31833" i_stop="31719" i_length="115">
            <donor d_prob="0.760" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31718" g_stop="31659" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="538" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E249826" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32825" e_stop="32481"/>
          <exon e_start="31966" e_stop="31834"/>
          <exon e_start="31718" e_stop="31659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAAGTAAGTTTACTTTCTCTGTTAGTAAAACTATGTATTTGACTGATCTGTAAGAGCCGGACTCAGTTTGTTGGATCACACTGGGTATGTTGTTGTTGTTGTACTGATTTGTAAGTGTTGTTTGGTTATTTGAACTTCTGAACTAATACGGCTAGATTCTGTAGGTAGGGCATTACTGTTTGATTTAATTCAGCTAGTTCAATGGTTTAATCTTAGGAAAATGTTTGAAGAACTGACAGTAAATAGTCGCTAAAGTTTCCGTTAGATTTATAGTATGTGTATAAGGGTGTATAATCAGAGTATAGTCTATGTATACTGCTCAAAAAATAAACAAGTGAATTCGACTGGCTATTTGTGAAAAAATCCGAAGTGTTTTGCTAAAAAGATATTGTTCTTGATTCTGAAGTTACGGTATTTAAAAGTATGTGCTAGTTTGTTAAATTAGTAAAGCCTAAATGTGTGTCTTGATGCAGCTTTGTGCTTCTTTAGTTATACTTTTTGGTTGGGTTCTTGTCAGATACAGAAACCAGAATGTAGCAATAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAGGGAATCTCGTTTTGGAAGGGAGGTTGCTATGTTATCCAGAGTTCAGCACAAGAACTTAGTGAAGGTTGTTTTTAAGTCCCAAACTTGTGTTTGGGTATGATCTATTTGATGAGTTGTTAAGACGGCTAAATGAATTGCTCACATTGGTTATTGGTTTTCATTTTATTTTTCATTTACAGTTCATAGGAGCTTGCAAGGAGCCTGTCATGGTCATAGTAACTGAACTTCTTCTCGGGGGG</genome_strand>
        <mrna_strand>TTGTTTTAAACACAAAGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGAAACCAGAATGTAGCAATAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAGGGAATCTCGTTTTGGAAAGGAGGTTGCTATGTTATCCACAGTTCAGCACAAGAACTTAGTGAAG...................................................................................................................TTCATATGAGCTTGCAAGGAGCCTGTCATGGTCATAGTAACTGAACTTCTTCTCGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707411" ref_strand="+" ref_description="SGN-E707411 [FA32DF12]">
      <seq>catttagggctatctttcattatctttcctcttattctactcactcttcaccttatttatctctcttttttcttctcctcctcctgatagcctcaattgatccaccaaccaaaccagctgatctacttcttctgaactttttatttttcaattgaaccagtaggaatttctggggtttcttgtttgtggggttcatttttctcttgttttaaacacaagggcatgttgtagatttgtttctggtttgtgggtctatgagttttctggttcttggtcataaagtcttgaactttttttgctgcttcaaatgctaggtgaattgttattaagtgtttcgaatttggtagttaaatagatgtgctactagttcattcttgaagttattatagggggagagtatttggggtctggaaaatgggatctgctaatgggttttactccggagaagaagagttcaatttggaggcgaaatggttaattgatccgaagcttctgttcgttggtcctaagattggagagggtgctcatgccaaagtgtatgagggaaaatacagaaaccagaatgcagcaataaagattgtgcataaaggggagacacctgaggagattgccaagagggaatctcgttttggaagggaggttgctatgttatccagagtccagcacaagaacttagtgaagttcataggagcttgcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="33319" stop="31400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33028" g_stop="32481" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32480" i_stop="31967" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31966" g_stop="31834" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="681" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31833" i_stop="31719" i_length="115">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31718" g_stop="31700" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="700" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E707411" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33028" e_stop="32481"/>
          <exon e_start="31966" e_stop="31834"/>
          <exon e_start="31718" e_stop="31700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATCTCTATCTTTCATTATCTTTCCTCTTATTCTACTCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAAGTAAGTTTACTTTCTCTGTTAGTAAAACTATGTATTTGACTGATCTGTAAGAGCCGGACTCAGTTTGTTGGATCACACTGGGTATGTTGTTGTTGTTGTACTGATTTGTAAGTGTTGTTTGGTTATTTGAACTTCTGAACTAATACGGCTAGATTCTGTAGGTAGGGCATTACTGTTTGATTTAATTCAGCTAGTTCAATGGTTTAATCTTAGGAAAATGTTTGAAGAACTGACAGTAAATAGTCGCTAAAGTTTCCGTTAGATTTATAGTATGTGTATAAGGGTGTATAATCAGAGTATAGTCTATGTATACTGCTCAAAAAATAAACAAGTGAATTCGACTGGCTATTTGTGAAAAAATCCGAAGTGTTTTGCTAAAAAGATATTGTTCTTGATTCTGAAGTTACGGTATTTAAAAGTATGTGCTAGTTTGTTAAATTAGTAAAGCCTAAATGTGTGTCTTGATGCAGCTTTGTGCTTCTTTAGTTATACTTTTTGGTTGGGTTCTTGTCAGATACAGAAACCAGAATGTAGCAATAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAGGGAATCTCGTTTTGGAAGGGAGGTTGCTATGTTATCCAGAGTTCAGCACAAGAACTTAGTGAAGGTTGTTTTTAAGTCCCAAACTTGTGTTTGGGTATGATCTATTTGATGAGTTGTTAAGACGGCTAAATGAATTGCTCACATTGGTTATTGGTTTTCATTTTATTTTTCATTTACAGTTCATAGGAGCTTGCAAGG</genome_strand>
        <mrna_strand>CATTTAGGGCTATCTTTCATTATCTTTCCTCTTATTCTACTCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGAAACCAGAATGCAGCAATAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAGGGAATCTCGTTTTGGAAGGGAGGTTGCTATGTTATCCAGAGTCCAGCACAAGAACTTAGTGAAG...................................................................................................................TTCATAGGAGCTTGCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689363" ref_strand="+" ref_description="SGN-E689363 [t3_tus_84_F19]">
      <seq>cctttaaactcttcaccttatttatctctcttttttcttcccctcctcctgatagcctcaattgatccaccaaccaaaccagctgatctacttcttctgaactttttatttttcccttgaaccagtaggaatttctggggtttcttgtttgtggggttcatttttctcttgttttaaacacaagggcatgttgtagatttgtttctggtttgtgggtctatgagttttctggttcttggtcataaagtcttgaactttttttgctgcttcaaatgctaggtgaattgttattaagtgtttcgaatttggtagttaaatagatgtgctactatttcattcttgaagttattatagggggagagtatttggggtctggaaaatgggatctgctaatgggttttactccggagaagaagagttcaatttggaggcgaaatggttaattgatccgaagcttctgttcgttggtcctaagattggagagggtgctcatgccaaagtgtatgagggaaaatacagaaaccagaatgtagcactaaagattgtgcataaaggggagacacctgaggagattgccaagaaggaatctcgttttggaagggaggttgctatgttatccagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="33286" stop="31557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32993" g_stop="32481" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32480" i_stop="31967" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31966" g_stop="31857" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="623" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E689363" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32993" e_stop="32481"/>
          <exon e_start="31966" e_stop="31857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACTCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAAGTAAGTTTACTTTCTCTGTTAGTAAAACTATGTATTTGACTGATCTGTAAGAGCCGGACTCAGTTTGTTGGATCACACTGGGTATGTTGTTGTTGTTGTACTGATTTGTAAGTGTTGTTTGGTTATTTGAACTTCTGAACTAATACGGCTAGATTCTGTAGGTAGGGCATTACTGTTTGATTTAATTCAGCTAGTTCAATGGTTTAATCTTAGGAAAATGTTTGAAGAACTGACAGTAAATAGTCGCTAAAGTTTCCGTTAGATTTATAGTATGTGTATAAGGGTGTATAATCAGAGTATAGTCTATGTATACTGCTCAAAAAATAAACAAGTGAATTCGACTGGCTATTTGTGAAAAAATCCGAAGTGTTTTGCTAAAAAGATATTGTTCTTGATTCTGAAGTTACGGTATTTAAAAGTATGTGCTAGTTTGTTAAATTAGTAAAGCCTAAATGTGTGTCTTGATGCAGCTTTGTGCTTCTTTAGTTATACTTTTTGGTTGGGTTCTTGTCAGATACAGAAACCAGAATGTAGCAATAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAGGGAATCTCGTTTTGGAAGGGAGGTTGCTATGTTATCCAGAG</genome_strand>
        <mrna_strand>CCTTTAAACTCTTCACCTTATTTATCTCTCTTTTTTCTTCCCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCCCTTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTATTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGAAACCAGAATGTAGCACTAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAAGGAATCTCGTTTTGGAAGGGAGGTTGCTATGTTATCCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332956" ref_strand="+" ref_description="SGN-E332956 [cTOD-19-J3]">
      <seq>tcactcttcaccttatttatctctcttttttcttctcctcctcctgatagcctcaattgatccaccaaccaaaccagctgatctacttcttctgaactttttatttttcaattgaaccagtaggaatttctggggtttcttgtttgtggggttcatttttctcttgttttaaacacaagggcatgttgtagatttgtttctggtttgtgggtctatgagttttctggttcttggtcataaagtcttgaactttttttgctgcttcaaatgctaggtgaattgttattaagtgtttcgaatttggtagttaaatagatgtgctactagttcattcttgaagttattatagggggagagtatttggggtctggaaaatgggatctgctaatgggttttactccggagaagaagagttcaatttggaggcgaaatggttaattgatccgaagcttctgttcgttggtcctaagattggagagggtgctcatgccaaagtgtatgagggaaaatacagaaaccagaatgtagcaataaagattgtgcataaaggggagacacctgaggagattgccaagagggaatctcgttttggaagggaggttgctatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="33288" stop="31563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32988" g_stop="32481" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32480" i_stop="31967" i_length="514">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31966" g_stop="31863" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="612" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E332956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32988" e_stop="32481"/>
          <exon e_start="31966" e_stop="31863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAAGTAAGTTTACTTTCTCTGTTAGTAAAACTATGTATTTGACTGATCTGTAAGAGCCGGACTCAGTTTGTTGGATCACACTGGGTATGTTGTTGTTGTTGTACTGATTTGTAAGTGTTGTTTGGTTATTTGAACTTCTGAACTAATACGGCTAGATTCTGTAGGTAGGGCATTACTGTTTGATTTAATTCAGCTAGTTCAATGGTTTAATCTTAGGAAAATGTTTGAAGAACTGACAGTAAATAGTCGCTAAAGTTTCCGTTAGATTTATAGTATGTGTATAAGGGTGTATAATCAGAGTATAGTCTATGTATACTGCTCAAAAAATAAACAAGTGAATTCGACTGGCTATTTGTGAAAAAATCCGAAGTGTTTTGCTAAAAAGATATTGTTCTTGATTCTGAAGTTACGGTATTTAAAAGTATGTGCTAGTTTGTTAAATTAGTAAAGCCTAAATGTGTGTCTTGATGCAGCTTTGTGCTTCTTTAGTTATACTTTTTGGTTGGGTTCTTGTCAGATACAGAAACCAGAATGTAGCAATAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAGGGAATCTCGTTTTGGAAGGGAGGTTGCTATGTTAT</genome_strand>
        <mrna_strand>TCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGAAACCAGAATGTAGCAATAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAGGGAATCTCGTTTTGGAAGGGAGGTTGCTATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249496" ref_strand="+" ref_description="SGN-E249496 [cLEF-56-O12]">
      <seq>cctcttattctactcactcttcaccttatttatctctcttttttcttctcctcctcctgatagcctcaattgatccaccaaccaaaccagctgatctacttcttctgaactttttatttttcaattgaaccagtaggaatttctggggtttcttgtttgtggggttcatttttctcttgttttaaacacaagggcatgttgtagatttgtttctggtttgtgggtctatgagttttctggttcttggtcataaagtcttgaactttttttgctgcttcaaatgctaggtgaattgttattaagtgtttcgaatttggtagttaaatagatgtgctactagttcattcttgaagttattatagggggagagtatttggggtctggaaaatgggatctgctaatgggttttactccggagaagaagagttcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="33301" stop="32268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33001" g_stop="32568" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E249496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33001" e_stop="32568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTATTCTACTCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTT</genome_strand>
        <mrna_strand>CCTCTTATTCTACTCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278689" ref_strand="+" ref_description="SGN-E278689 [cLER-10-L12]">
      <seq>cttattctactcactcttcaccttatttatctctcttttttcttctcctcctcctgatagcctcaattgatccaccaaccaaaccagctgatctacttcttctgaactttttatttttcaattgaaccagtaggaatttctggggtttcttgtttgcggggttcatttttctcttgttttaaacacaagggcatgttgtagatttgtttctggtttgtgggtctatgagatttctggttcttgggcataaagtcttgaactttttttgctgcttcaaatgctaggtgaattgttattaagtgtttcgaatttggtagataaatagatgtgctactagttcattcttgaagttattatagggggagagtatttggggtctggaaaatgggatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="33298" stop="32304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32998" g_stop="32604" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E278689" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32998" e_stop="32604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTCTACTCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGC</genome_strand>
        <mrna_strand>CTTATTCTACTCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGCGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGATTTCTGGTTCTTGGGCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGATAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467952" ref_strand="+" ref_description="SGN-E467952 [cSTB-2-O23]">
      <seq>cttttactgacattattagaatttatatgcttgtgattttctcttgctgattgcacttcattgattcattttcagtctatggacctcagctgaaggccagacaacaagccgaatagctatccaacagttgaaattaatgactccttgcatagttttagctggccctgttgggcttggatttggttatatgagtgcaaaaggagaaaatgtctttccggctattagccccaccttgtctagcttgctcctgattgccagttgcctcatttactcctatagcggacagctggatgccttttgttctggcggtattcttttatcttgcggagcttcacttggagtagtcattcaatggattatacaggtcgccattgctcacctccgactctttgatacccagttttattgtttagggttaaaagacaacctttccatgtttttcatatacttgacattttatgcttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="39605" stop="41214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39905" g_stop="40029" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40030" i_stop="40301" i_length="272">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.760" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40302" g_stop="40366" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="192" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40367" i_stop="40451" i_length="85">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40452" g_stop="40518" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="259" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40519" i_stop="40631" i_length="113">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.782" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40632" g_stop="40677" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="305" r_length="46" r_score="0.870"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40678" i_stop="40754" i_length="77">
            <donor d_prob="0.966" d_score="0.87"/>
            <acceptor a_prob="0.868" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40755" g_stop="40917" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="468" r_length="163" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E467952" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39905" e_stop="40029"/>
          <exon e_start="40302" e_stop="40366"/>
          <exon e_start="40452" e_stop="40518"/>
          <exon e_start="40632" e_stop="40677"/>
          <exon e_start="40755" e_stop="40917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACTGACATTATTAGAATTTATATGCTTGTGATTTTCTCTTGC--ATTGCACTTCATGGATTCATTTTCAGTCTGTGGACCTCAGCTGAAGGCCTGACTACAAGCCGAATAGCTATCCAACAGGTAATGAGTTTATTATTACGCAAAATTCAGCTTGAGTTTCGTCCTACCGTCACTTATCTGGCCATGATTGCTTAGTCAATTATTTGTCTATTATCGCAATTTGCTGTGAACTAAAATTAAATAAAGCCCTTTTGTATGCGTACTTCCTTTACTATGTATCAACATGCCTATTGGAGCATGTATTACTATTGGTCTTTGTTATTCAATGTGTACTTTCTCCTTTCAGATTCGGAGATCTTCACTATTTTAACTAAACTTCACATATTTTTCAGTTGAAAATAATGACTCCTTGCGTAATTTTTGCTGGCCCTGTTGGGCTTGGATTTGGTTATATGAGGTAAGATTATATTTTCTATTTGCTTTTCCTATTATTAGTTGTTCTTTGAGCACCTATGATAATATTTATATTTTTTTCACTCCAGTGCAAAAGGAGAAAATGTCTTTCCGGCAATTAGCCCCACCTTGTCTAGCTTGCTCCTGATTGCCAGTGTAAATTACTAACTTGTCGTAGCCCAAGTATTATATCATTGAAATTATTTCGTATGTATCTCATAGTAGATTCTTCTAGACTCTGACATATAAATAGTTTTAATTTATCATAGTGCCTCTTCTACTCCTATAGCAGACAGTCGGATACCTTTTGTTCTGGTAAAGTAATCTACACAGTTACTTAAGTGATGTTACGTGAGAATGATTATGATTGAAGTTTTAGACTCTTTGAATAGGTGGTATTCTTTTATCTTGCGGAGCTTCACTTGGTGTAGTCATTCAATGGATTATCCAGGTCGCCATTGCTCACCTCCGACTCTTTTATATTCAATTTTATTGTTTAGGGTTAAAAGACAACCTTTCCATGTTTTTCATATACTTGACATTTTATGTGCGAGT</genome_strand>
        <mrna_strand>CTTTTACTGACATTATTAGAATTTATATGCTTGTGATTTTCTCTTGCTGATTGCACTTCATTGATTCATTTTCAGTCTATGGACCTCAGCTGAAGGCCAGACAACAAGCCGAATAGCTATCCAACAG................................................................................................................................................................................................................................................................................TTGAAATTAATGACTCCTTGCATAGTTTTAGCTGGCCCTGTTGGGCTTGGATTTGGTTATATGAG.....................................................................................TGCAAAAGGAGAAAATGTCTTTCCGGCTATTAGCCCCACCTTGTCTAGCTTGCTCCTGATTGCCAGT.................................................................................................................TGCCTCATTTACTCCTATAGCGGACAGCTGGATGCCTTTTGTTCTG.............................................................................GCGGTATTCTTTTATCTTGCGGAGCTTCACTTGGAGTAGTCATTCAATGGATTATACAGGTCGCCATTGCTCACCTCCGACTCTTTGATACCCAGTTTTATTGTTTAGGGTTAAAAGACAACCTTTCCATGTTTTTCATATACTTGACATTTTATGCTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376593" ref_strand="+" ref_description="SGN-E376593 [TUS-18-I4]">
      <seq>ccaagcaattttttgaaagctatttgtgatcttgggtttactattgagtcaaaggatttctctaacaaaatgtttgtgttgttctacttaaagaaaaaggaaaaacagaattcagtagacaaagagattaattggcctgagctcaaggcatgtatttataaacggcgctgagcttggccataatatggtctaagattttactatagtccctgttcattctggagatgggtttaaacttgttgctagatctcactcattgtttcaaaccgtgctcccaaaaaagactgtccactgaagtgaggaatggacgctgttgtgtttcaaagaatgcgcttcacaatgattctaggagaaaagtagtctattctttgaatctcatctttgagaagtaggattagtatcggcattattgtagtatattggatttttgaaattgtagttattttaattgtttgaaaattataataactaaattaatatgatactgatgtatttatttgatgagattcaaaaaaaaaaaaaaaaataaaaaaaaaaagaaaaacaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="44815" stop="43539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44515" g_stop="44462" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44386" g_stop="44342" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="99" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44341" i_stop="44257" i_length="85">
            <donor d_prob="0.032" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44256" g_stop="43846" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="510" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="511" polyA_stop="538"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E376593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44515" e_stop="44462"/>
          <exon e_start="44386" e_stop="44342"/>
          <exon e_start="44256" e_stop="43846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAGGTCTATTCCATTTCTTTTCGTTATGAGTTTGATGAAATCTACTACAATTTCTAAAGCTTGTCTATGTTTCTGCAGGATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAGGTTTGGTTTGATGGATAATTTAGTTTTATTCTTCTTCTGTGACTTGGGAAATATGTGCTGATTGTCTGTATCTCTCTCTCAACAGGAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTGGATTTTTGAAATTGTAGTTATTTTAATTGTTTGAAAATTATAATAACTAAATTAATATGATACTGATGTATTTATTTGATGAGATTCA</genome_strand>
        <mrna_strand>CCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAG...........................................................................GATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAG.....................................................................................GAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTGGATTTTTGAAATTGTAGTTATTTTAATTGTTTGAAAATTATAATAACTAAATTAATATGATACTGATGTATTTATTTGATGAGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389751" ref_strand="+" ref_description="SGN-E389751 [TUS-4-C4]">
      <seq>cccacgcaattttttgaaagctatttgtgatcttgggtttactattgagtcaaaggatttctctaacaaaatgtttgtgttgttctacttaaagaaaaaggaaaaacagaattcagtagacaaagagattaattggcctgagctcaaggcatgtatttataaacggcgctgagcttggccataatatggtctaagattttactatagtccctgttcattctggagatgggtttaaacttgttgctagatctcactcattgtttcaaaccgtgctcccaaaaaagactgtccactgaagtgaggaatggacgctgttgtgtttcaaagaatgcgcttcacaatgattctaggagaaaagtagtctattctttgaatctcatctttgagaagtaggattagtatcggcattattgtagtatattggatttttgaaattgtagttattttaattgtttgaaaattataataactaaattaatatgatactgatgtatttatttgatgagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="44816" stop="43548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44516" g_stop="44462" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44386" g_stop="44342" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="100" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44341" i_stop="44257" i_length="85">
            <donor d_prob="0.032" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44256" g_stop="43848" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="509" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E389751" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44516" e_stop="44462"/>
          <exon e_start="44386" e_stop="44342"/>
          <exon e_start="44256" e_stop="43848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAGGTCTATTCCATTTCTTTTCGTTATGAGTTTGATGAAATCTACTACAATTTCTAAAGCTTGTCTATGTTTCTGCAGGATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAGGTTTGGTTTGATGGATAATTTAGTTTTATTCTTCTTCTGTGACTTGGGAAATATGTGCTGATTGTCTGTATCTCTCTCTCAACAGGAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTGGATTTTTGAAATTGTAGTTATTTTAATTGTTTGAAAATTATAATAACTAAATTAATATGATACTGATGTATTTATTTGATGAGATT</genome_strand>
        <mrna_strand>CCCACGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAG...........................................................................GATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAG.....................................................................................GAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTGGATTTTTGAAATTGTAGTTATTTTAATTGTTTGAAAATTATAATAACTAAATTAATATGATACTGATGTATTTATTTGATGAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231602" ref_strand="+" ref_description="SGN-E231602 [cLED-4-A5]">
      <seq>ccaagcaattttttgaaagctatttgtgatcttgggtttactattgagtcaaaggatttctctaacaaaatgtttgtgttgttctacttaaagaaaaaggaaaaacagaattcagtagacaaagagattaattggcctgagctcaaggcatgtatttataaacggcgctgagcttggccataatatggtctaagattttactatagtccctgttcattctggagatgggtttaaacttgttgctagatctcactcattgtttcaaaccgtgctcccaaaaaagactgtccactgaagtgaggaatggacgctgttgtgtttcaaagaatgcgcttcacaatgattctaggagaaaagtagtctattctttgaatctcatctttgagaagtaggattagtatcggcattattgtagtatattggatttttgaaattgtagttattttaattgtttgaaaattataataactaaattaatatgatactgatgtatttatttgatgagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="44815" stop="43548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44515" g_stop="44462" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44386" g_stop="44342" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="99" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44341" i_stop="44257" i_length="85">
            <donor d_prob="0.032" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44256" g_stop="43848" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="508" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E231602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44515" e_stop="44462"/>
          <exon e_start="44386" e_stop="44342"/>
          <exon e_start="44256" e_stop="43848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAGGTCTATTCCATTTCTTTTCGTTATGAGTTTGATGAAATCTACTACAATTTCTAAAGCTTGTCTATGTTTCTGCAGGATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAGGTTTGGTTTGATGGATAATTTAGTTTTATTCTTCTTCTGTGACTTGGGAAATATGTGCTGATTGTCTGTATCTCTCTCTCAACAGGAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTGGATTTTTGAAATTGTAGTTATTTTAATTGTTTGAAAATTATAATAACTAAATTAATATGATACTGATGTATTTATTTGATGAGATT</genome_strand>
        <mrna_strand>CCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAG...........................................................................GATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAG.....................................................................................GAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTGGATTTTTGAAATTGTAGTTATTTTAATTGTTTGAAAATTATAATAACTAAATTAATATGATACTGATGTATTTATTTGATGAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550408" ref_strand="+" ref_description="SGN-E550408 [TUS-5-C4](-)">
      <seq>cngcgnacccccaagcaattttttgaaagctatttgtgatcttgggtttactattgagtcaaaggatttctctaacaaaatgtttgtgttgttctacttaaagaaaaaggaaaaacagaattcagtagacaaagagattaattggcctgagctcaaggcatgtatttataaacggcgctgagcttggccataatatggtctaagattttactatagtccctgttcattctggagatgggtttaaacttgttgctagatctcactcattgtttcaaaccgtgctcccaaaaaagactgtccactgaagtgaggaatggacgctgttgtgtttcaaagcatgcgcttcacaatgattctaggagaaaagtagtctattctttgaatctcatctttgagaagtaggattagtatcggcattattgtagtatattcgatttttgaagaatagttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="44823" stop="43616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44525" g_stop="44462" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44386" g_stop="44342" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="109" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44341" i_stop="44257" i_length="85">
            <donor d_prob="0.032" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44256" g_stop="43912" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="453" r_length="344" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E550408" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44525" e_stop="44462"/>
          <exon e_start="44386" e_stop="44342"/>
          <exon e_start="44256" e_stop="43912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGCAGACCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAGGTCTATTCCATTTCTTTTCGTTATGAGTTTGATGAAATCTACTACAATTTCTAAAGCTTGTCTATGTTTCTGCAGGATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAGGTTTGGTTTGATGGATAATTTAGTTTTATTCTTCTTCTGTGACTTGGGAAATATGTGCTGATTGTCTGTATCTCTCTCTCAACAGGAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTGGATTTTTGAAATTGTAGTTATT</genome_strand>
        <mrna_strand>CNGCGNACCCCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAG...........................................................................GATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAG.....................................................................................GAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGCATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTCGATTTTTG-AAGAATAGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389489" ref_strand="+" ref_description="SGN-E389489 [TUS-4-C4](-)">
      <seq>cccaagcaattttttgaaagctatttgtgatcttgggtttactattgagtcaaaggatttctctaacaaaatgtttgtgttgttctacttaaagaaaaaggaaaaacagaattcagtagacaaagagattaattggcctgagctcaaggcatgtatttataaacggcgctgagcttggccataatatggtctaagattttactatagtccctgttcattctggagatgggtttaaacttgttgctagatctcactcattgtttcaaaccgtgctcccaaaaaagactgtccactgaagtgaggaatggacgctgttgtgtttcaaagaatgcgcttcacaatgattctaggagaaaagtattctattctttgaggctcatctttgagaagtaggattagtatcggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="44816" stop="43649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44516" g_stop="44462" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44386" g_stop="44342" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="100" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44341" i_stop="44257" i_length="85">
            <donor d_prob="0.032" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44256" g_stop="43949" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="408" r_length="308" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E389489" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44516" e_stop="44462"/>
          <exon e_start="44386" e_stop="44342"/>
          <exon e_start="44256" e_stop="43949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAGGTCTATTCCATTTCTTTTCGTTATGAGTTTGATGAAATCTACTACAATTTCTAAAGCTTGTCTATGTTTCTGCAGGATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAGGTTTGGTTTGATGGATAATTTAGTTTTATTCTTCTTCTGTGACTTGGGAAATATGTGCTGATTGTCTGTATCTCTCTCTCAACAGGAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCAT</genome_strand>
        <mrna_strand>CCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAG...........................................................................GATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAG.....................................................................................GAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTATTCTATTCTTTGAGGCTCATCTTTGAGAAGTAGGATTAGTATCGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610306" ref_strand="+" ref_description="SGN-E610306 [57464]">
      <seq>acggaagagaggaaaggttcataagaagtctactactcaggccggagacgatccttctaaggtctccggtgtgaatcagtctatggtttcgaatgtggcgatctcaaaaactaagaaacctttgtcttttctcgataagatgaaggcgagattatcaggaggacacttccgtatgcttaatgaaaaactctacacttgctctggagatgaggcgctcaattatttcaaggaaaatccggaactttttaatgtgggtatcaggagcaaatgttacattggccagaaaaacctgttaatataatcacaaaatggctaaaggatcatagcccttcattaattgttgctgactttggctgtggagatgcacggctggcaagaagtgtgaagaacaaagtgtggtctttggatcttgttgcacatgatccttcagtcattgcttgtgacatgtcaaataggcctcgtcagttgatgtggccatcttttgtctttcattgatgggaaccgattatccaagctttcttcaggaagcactcagagttcttaaacccagggggtggcttttgatagcagaagttaaaagcagacccaaacaattttttgaaagctatttgtgagcttgggtttaccattgagtcaaaggatttctctaacaaaatgtttgtgctgttctacttaaagaaaaaggaaaaacagaattcagtagacaaagagattaattggcctgagctcaaggcttgcatttataaacggcgctaagctttggcataatatggtctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="46954" stop="43863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46654" g_stop="46516" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46515" i_stop="46431" i_length="85">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46430" g_stop="46369" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="201" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46368" i_stop="46276" i_length="93">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46275" g_stop="46224" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="253" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46223" i_stop="45187" i_length="1037">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45186" g_stop="45082" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="358" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45081" i_stop="44991" i_length="91">
            <donor d_prob="0.388" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44990" g_stop="44896" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="453" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44895" i_stop="44762" i_length="134">
            <donor d_prob="0.692" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44761" g_stop="44661" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="554" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44660" i_stop="44546" i_length="115">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.63"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44545" g_stop="44462" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="639" r_length="85" r_score="0.762"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75">
            <donor d_prob="0.867" d_score="0.94"/>
            <acceptor a_prob="0.821" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44386" g_stop="44342" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="684" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="44341" i_stop="44257" i_length="85">
            <donor d_prob="0.032" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="44256" g_stop="44163" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="778" r_length="94" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E610306" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46654" e_stop="46516"/>
          <exon e_start="46430" e_stop="46369"/>
          <exon e_start="46275" e_stop="46224"/>
          <exon e_start="45186" e_stop="45082"/>
          <exon e_start="44990" e_stop="44896"/>
          <exon e_start="44761" e_stop="44661"/>
          <exon e_start="44545" e_stop="44462"/>
          <exon e_start="44386" e_stop="44342"/>
          <exon e_start="44256" e_stop="44163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAAGAGAGGAAAGGTTCATAAGAAATCTTCCACTCCGGCCGGAAACGATCCTTCTAAGGTCTCCGGCGTGAATCAGTCTATGGTTTCGAATACGGCGATCTCAAAGACTAAGAAACCTTCGTCTTTTCTCGATAAGGTTCTAGTTGTATTTCTCCTTATATAATTATATGTATGTTCGTATTTTTACAAATAGATTTTTGATACTTGTGGAGTTTACGCAGATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTCGTATGTCTACCTTCTTCGCAAGTTGCTGCAATTTTTTCGCTGGATAATATGTTCAAATATTGATGCAATTGCTTTGCTTTTTTTGTTATCCAGAGGAGATGAGGCGCTTAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTGGTAAGAATCATTTTCTCCAATATTTTGTACTTCTACTGATAACTCAAGTTTCTTAGATTTGAGGTTGCTGTAGACTGAACTTGATTGCAAGAGATTTAGTGGGGAAAAAACAAAACTTTTAGGTCCTGAAGCTGAAAACAAAGTAAAAATTATCAAGGTCTTCAGAGAGATAAATTGTCCTGTGCCGATATTAAGAGACTTGAAATTGAACATCAAGTGGGTGCTATGGTATTTCTAAAGGTTTCTCCGGGGAAGAAAATTATGAGATTTGGTCTGAAAGGAAAACTTTGTTCTTGATTTATTGGGCCTTATGAAGTACTTGATAGAGCTAGCCTGATTGCATATGTATTAGCCTTACTACTAAGATTTGATCCGTAATGAATGAGTAATAAGGGTTTTGCATTTGCTTGGTAAGGACTAAAAGAGGATGAGAAGTTAAACAAAGGATCATTGCACCCCCTCTGTCCAATATTACTTTGTTCAATAAGGAATCTTGGCCTCTTATAGTGACTATATTATTGGTATCTGACTGAACATGAATTTAAGATGTTAATTTTGACTTACATATTATGATAGTTATGGTTTAGAGAAAGTATCATATCAAAAATAAAAGTTTGGCATATTTAATGAAGTCATGAAAGTTGTATAGAAATGAAGGTGTTAATATTTCGAGAGGAGCTGTTCAGAAGACTAAGTTGTATGTAATCCCTCATAGGAACTGTTTGAAAGACCAAGTTTGTTATCAAGGATGGCTTCTTGGAGCTATTACTTCATTTTTCTCCCTGACCTCATGTTCTTAACGACAAACTAATCACTCCTAATAAGACTTTTACTGTCTTCCACAAATACCCCCGTGTGATGGCTGGTTTATAATATCCCCTTCTGAAGTTGTATGGACTGCAACTTCTGAGTCTGATTCAACTTCAGGTTTGCAATTTATGAAACATCCTGGAGTATTTCTTGAGTTCTTGTCAATATCCCTCACCATTTAGTATCTTCTTGTTCTTAACCATACTTAGCTGGTCAGTATCATGCAGGGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCAGACTTTGGCTGCGGTATGGGTCTCAAATTATCAGGAAGCAACAAATTTCATGTGTTTATCACTTTTGCTGTTGTGTGACTCATTGATTGTCCAACTTATTGCAGGAGATGCTCGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTCGCACATGATCCTTCAGTAATTGCTTGTGACATGTCAAATGTATGAGCTTCGCTTGGAGTCTTGCTTATAGAGTTTCTTGCTGTTTGAATTGCCTTTAAGTTTAGTATATTGAATACATACTGATTAGGAACTTTGTTTTAAATTAATGCTGCTCTTTTGGCAGACCCCTCTAGAGTCCTCGTCAGTTGATGTGGCCATCTTTTGCCTTTCATTGATGGGAACCGATTATCCAAGCTTTCTTCAGGAAGCGCGCAGAGTTCTTAAACCCAGGTTGGCATGCAGTACTTGCTTAAGTTGTAAGATACATATCTTCATCAGATAGCTTAGTTTATGAATCGAGTTGGATGGTTGTTTCCAGGGGGTGGCTTTTGATAGCAGAAGTTAAAAGCAGGCTTGATCCAACTACAG-GGGGTGCAGACCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAGGTCTATTCCATTTCTTTTCGTTATGAGTTTGATGAAATCTACTACAATTTCTAAAGCTTGTCTATGTTTCTGCAGGATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAGGTTTGGTTTGATGGATAATTTAGTTTTATTCTTCTTCTGTGACTTGGGAAATATGTGCTGATTGTCTGTATCTCTCTCTCAACAGGAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAA</genome_strand>
        <mrna_strand>ACGGAAGAGAGGAAAGGTTCATAAGAAGTCTACTACTCAGGCCGGAGACGATCCTTCTAAGGTCTCCGGTGTGAATCAGTCTATGGTTTCGAATGTGGCGATCTCAAAAACTAAGAAACCTTTGTCTTTTCTCGATAAG.....................................................................................ATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTC.............................................................................................TGGAGATGAGGCGCTCAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCTGACTTTGGCTGTG...........................................................................................GAGATGCACGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTTGCACATGATCCTTCAGTCATTGCTTGTGACATGTCAAAT......................................................................................................................................AGGCCTCGTCAGTTGATGTGGCCATCTTTTGTCTTTCATTGATGGGAACCGATTATCCAAGCTTTCTTCAGGAAGCACTCAGAGTTCTTAAACCCAGGGGG...................................................................................................................TGGCTTTTGATAGCAGAAGTTAAAAGCAGACCCAAACAATTTTTTGAAAGCTATTTGTGAGCTTGGGTTTACCATTGAGTCAAAG...........................................................................GATTTCTCTAACAAAATGTTTGTGCTGTTCTACTTAAAGAAAAAG.....................................................................................GAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCTTGCATTTATAAACGGCGCTAAGCTTTGGCATAATATGGTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460642" ref_strand="+" ref_description="SGN-E460642 [cPRO-31-N10]">
      <seq>gcagatgaaggcgagattatcaggaggacacttccgtatgcttaatgaaaaactctacacttgctctggagatgaggcgctcaattatttcaaggaaaatccggaactttttaatgtgggtatcaggagcaaatgttacattggccagaaaaacctgttaatataatcacaaaatggctaaaggatcatagcccttcattaattgttgctgactttggctgtggagatgcacggctggcaagaagtgtgaagaacaaagtgtggtctttggatcttgttgcacatgatccttcagtcattgcttgtgacatgtcaaatacccctctagaggcctcgtcagttgatgtggccatcttttgcctttcattgatgggaaccgattatccaagctttcttcaggaagcactcagagttcttaaacccagggggtggcttttgatagcagaagttaaaagcaggcttgatccaactacaggaggagcagacccaaacaattttttgaaagctatttgtgagcttgggtttaccatcgagtcnaaggatttctctaacaaatgtttgtgctgttctactttaagaaaaaggaaaacagaattcnngtaacaagagattattggcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="46734" stop="44041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46434" g_stop="46369" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46368" i_stop="46276" i_length="93">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46275" g_stop="46224" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="118" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46223" i_stop="45187" i_length="1037">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45186" g_stop="45082" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="223" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45081" i_stop="44991" i_length="91">
            <donor d_prob="0.388" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44990" g_stop="44896" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="318" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44895" i_stop="44772" i_length="124">
            <donor d_prob="0.692" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44771" g_stop="44665" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="425" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44664" i_stop="44577" i_length="88">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44576" g_stop="44462" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="540" r_length="115" r_score="0.939"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75">
            <donor d_prob="0.867" d_score="0.90"/>
            <acceptor a_prob="0.821" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44386" g_stop="44342" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="584" r_length="44" r_score="0.933"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44341" i_stop="44257" i_length="85">
            <donor d_prob="0.032" d_score="0.93"/>
            <acceptor a_prob="0.990" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44256" g_stop="44217" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="621" r_length="37" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E460642" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46434" e_stop="46369"/>
          <exon e_start="46275" e_stop="46224"/>
          <exon e_start="45186" e_stop="45082"/>
          <exon e_start="44990" e_stop="44896"/>
          <exon e_start="44771" e_stop="44665"/>
          <exon e_start="44576" e_stop="44462"/>
          <exon e_start="44386" e_stop="44342"/>
          <exon e_start="44256" e_stop="44217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTCGTATGTCTACCTTCTTCGCAAGTTGCTGCAATTTTTTCGCTGGATAATATGTTCAAATATTGATGCAATTGCTTTGCTTTTTTTGTTATCCAGAGGAGATGAGGCGCTTAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTGGTAAGAATCATTTTCTCCAATATTTTGTACTTCTACTGATAACTCAAGTTTCTTAGATTTGAGGTTGCTGTAGACTGAACTTGATTGCAAGAGATTTAGTGGGGAAAAAACAAAACTTTTAGGTCCTGAAGCTGAAAACAAAGTAAAAATTATCAAGGTCTTCAGAGAGATAAATTGTCCTGTGCCGATATTAAGAGACTTGAAATTGAACATCAAGTGGGTGCTATGGTATTTCTAAAGGTTTCTCCGGGGAAGAAAATTATGAGATTTGGTCTGAAAGGAAAACTTTGTTCTTGATTTATTGGGCCTTATGAAGTACTTGATAGAGCTAGCCTGATTGCATATGTATTAGCCTTACTACTAAGATTTGATCCGTAATGAATGAGTAATAAGGGTTTTGCATTTGCTTGGTAAGGACTAAAAGAGGATGAGAAGTTAAACAAAGGATCATTGCACCCCCTCTGTCCAATATTACTTTGTTCAATAAGGAATCTTGGCCTCTTATAGTGACTATATTATTGGTATCTGACTGAACATGAATTTAAGATGTTAATTTTGACTTACATATTATGATAGTTATGGTTTAGAGAAAGTATCATATCAAAAATAAAAGTTTGGCATATTTAATGAAGTCATGAAAGTTGTATAGAAATGAAGGTGTTAATATTTCGAGAGGAGCTGTTCAGAAGACTAAGTTGTATGTAATCCCTCATAGGAACTGTTTGAAAGACCAAGTTTGTTATCAAGGATGGCTTCTTGGAGCTATTACTTCATTTTTCTCCCTGACCTCATGTTCTTAACGACAAACTAATCACTCCTAATAAGACTTTTACTGTCTTCCACAAATACCCCCGTGTGATGGCTGGTTTATAATATCCCCTTCTGAAGTTGTATGGACTGCAACTTCTGAGTCTGATTCAACTTCAGGTTTGCAATTTATGAAACATCCTGGAGTATTTCTTGAGTTCTTGTCAATATCCCTCACCATTTAGTATCTTCTTGTTCTTAACCATACTTAGCTGGTCAGTATCATGCAGGGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCAGACTTTGGCTGCGGTATGGGTCTCAAATTATCAGGAAGCAACAAATTTCATGTGTTTATCACTTTTGCTGTTGTGTGACTCATTGATTGTCCAACTTATTGCAGGAGATGCTCGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTCGCACATGATCCTTCAGTAATTGCTTGTGACATGTCAAATGTATGAGCTTCGCTTGGAGTCTTGCTTATAGAGTTTCTTGCTGTTTGAATTGCCTTTAAGTTTAGTATATTGAATACATACTGATTAGGAACTTTGTTTTAAATTAATGCTGCTCTTTTGGCAGACCCCTCTAGAGTCCTCGTCAGTTGATGTGGCCATCTTTTGCCTTTCATTGATGGGAACCGATTATCCAAGCTTTCTTCAGGAAGCGCGCAGAGTTCTTAAACCCAGGTTGGCATGCAGTACTTGCTTAAGTTGTAAGATACATATCTTCATCAGATAGCTTAGTTTATGAATCGAGTTGGATGGTTGTTTCCAGGGGGTGGCTTTTGATAGCAGAAGTTAAAAGCAGGCTTGATCCAACTACAGGGGGTGCAGACCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAGGTCTATTCCATTTCTTTTCGTTATGAGTTTGATGAAATCTACTACAATTTCTAAAGCTTGTCTATGTTTCTGCAGGATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAGGTTTGGTTTGATGGATAATTTAGTTTTATTCTTCTTCTGTGACTTGGGAAATATGTGCTGATTGTCTGTATCTCTCTCTCAACAGGAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTG</genome_strand>
        <mrna_strand>GCAGATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTC.............................................................................................TGGAGATGAGGCGCTCAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCTGACTTTGGCTGTG...........................................................................................GAGATGCACGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTTGCACATGATCCTTCAGTCATTGCTTGTGACATGTCAAAT............................................................................................................................ACCCCTCTAGAGGCCTCGTCAGTTGATGTGGCCATCTTTTGCCTTTCATTGATGGGAACCGATTATCCAAGCTTTCTTCAGGAAGCACTCAGAGTTCTTAAACCCAG........................................................................................GGGGTGGCTTTTGATAGCAGAAGTTAAAAGCAGGCTTGATCCAACTACAGGAGGAGCAGACCCAAACAATTTTTTGAAAGCTATTTGTGAGCTTGGGTTTACCATCGAGTCNAAG...........................................................................GATTTCTCTAAC-AAATGTTTGTGCTGTTCTACTTTAAGAAAAAG.....................................................................................G-AAAACAGAATTCNNGTAAC-AAGAGATT-ATTGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404268" ref_strand="+" ref_description="SGN-E404268 [PPC-13-M9]">
      <seq>ataagaagtctactactcaggccggagacgatccttctaaggtctccggcgtgaatcagtctatggtttcgaatgtggcgatctcaaaaactaagaaacctttgtcttttctcgataagatgaaggcgagattatcaggaggacacttccgtatgcttaatgaaaaactctacacttgctctggagatgaggcgctcaattatttcaaggaaaatccggaactttttaatgtgtatcatgcagggtatcaggagcaaatgttacattggccagaaaaacctgttaatataatcacaaaatggctaaaggatcatagcccttcattaattgttgctgactttggctgtggagatgcacggctggcaagaagtgtgaagaacaaagtgtggtctttggatcttgttgcacatgatccttcagtcattgcttgtgacatgtcaaatacccctctagaggcctcgtcagttgatgtggccatcttttgcctttcattgatgggaaccgattatccaagctttcttcaggaagcactcagagttcttaaacccagggggtggcttttgatagcagaagttaaaagcaggcttgatccaactacaggaggagcagacccaaacaattttttgaaagctatttgtgagcttgggtttaccatcgagtcaaaggatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="46934" stop="44156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46634" g_stop="46516" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46515" i_stop="46431" i_length="85">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46430" g_stop="46369" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="181" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46368" i_stop="46276" i_length="93">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46275" g_stop="46224" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="233" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46223" i_stop="45197" i_length="1027">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45196" g_stop="45082" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="348" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45081" i_stop="44991" i_length="91">
            <donor d_prob="0.388" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44990" g_stop="44896" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="443" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44895" i_stop="44772" i_length="124">
            <donor d_prob="0.692" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44771" g_stop="44665" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="550" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44664" i_stop="44577" i_length="88">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44576" g_stop="44462" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="665" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75">
            <donor d_prob="0.867" d_score="0.92"/>
            <acceptor a_prob="0.821" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44386" g_stop="44380" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="672" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E404268" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46634" e_stop="46516"/>
          <exon e_start="46430" e_stop="46369"/>
          <exon e_start="46275" e_stop="46224"/>
          <exon e_start="45196" e_stop="45082"/>
          <exon e_start="44990" e_stop="44896"/>
          <exon e_start="44771" e_stop="44665"/>
          <exon e_start="44576" e_stop="44462"/>
          <exon e_start="44386" e_stop="44380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGAAATCTTCCACTCCGGCCGGAAACGATCCTTCTAAGGTCTCCGGCGTGAATCAGTCTATGGTTTCGAATACGGCGATCTCAAAGACTAAGAAACCTTCGTCTTTTCTCGATAAGGTTCTAGTTGTATTTCTCCTTATATAATTATATGTATGTTCGTATTTTTACAAATAGATTTTTGATACTTGTGGAGTTTACGCAGATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTCGTATGTCTACCTTCTTCGCAAGTTGCTGCAATTTTTTCGCTGGATAATATGTTCAAATATTGATGCAATTGCTTTGCTTTTTTTGTTATCCAGAGGAGATGAGGCGCTTAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTGGTAAGAATCATTTTCTCCAATATTTTGTACTTCTACTGATAACTCAAGTTTCTTAGATTTGAGGTTGCTGTAGACTGAACTTGATTGCAAGAGATTTAGTGGGGAAAAAACAAAACTTTTAGGTCCTGAAGCTGAAAACAAAGTAAAAATTATCAAGGTCTTCAGAGAGATAAATTGTCCTGTGCCGATATTAAGAGACTTGAAATTGAACATCAAGTGGGTGCTATGGTATTTCTAAAGGTTTCTCCGGGGAAGAAAATTATGAGATTTGGTCTGAAAGGAAAACTTTGTTCTTGATTTATTGGGCCTTATGAAGTACTTGATAGAGCTAGCCTGATTGCATATGTATTAGCCTTACTACTAAGATTTGATCCGTAATGAATGAGTAATAAGGGTTTTGCATTTGCTTGGTAAGGACTAAAAGAGGATGAGAAGTTAAACAAAGGATCATTGCACCCCCTCTGTCCAATATTACTTTGTTCAATAAGGAATCTTGGCCTCTTATAGTGACTATATTATTGGTATCTGACTGAACATGAATTTAAGATGTTAATTTTGACTTACATATTATGATAGTTATGGTTTAGAGAAAGTATCATATCAAAAATAAAAGTTTGGCATATTTAATGAAGTCATGAAAGTTGTATAGAAATGAAGGTGTTAATATTTCGAGAGGAGCTGTTCAGAAGACTAAGTTGTATGTAATCCCTCATAGGAACTGTTTGAAAGACCAAGTTTGTTATCAAGGATGGCTTCTTGGAGCTATTACTTCATTTTTCTCCCTGACCTCATGTTCTTAACGACAAACTAATCACTCCTAATAAGACTTTTACTGTCTTCCACAAATACCCCCGTGTGATGGCTGGTTTATAATATCCCCTTCTGAAGTTGTATGGACTGCAACTTCTGAGTCTGATTCAACTTCAGGTTTGCAATTTATGAAACATCCTGGAGTATTTCTTGAGTTCTTGTCAATATCCCTCACCATTTAGTATCTTCTTGTTCTTAACCATACTTAGCTGGTCAGTATCATGCAGGGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCAGACTTTGGCTGCGGTATGGGTCTCAAATTATCAGGAAGCAACAAATTTCATGTGTTTATCACTTTTGCTGTTGTGTGACTCATTGATTGTCCAACTTATTGCAGGAGATGCTCGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTCGCACATGATCCTTCAGTAATTGCTTGTGACATGTCAAATGTATGAGCTTCGCTTGGAGTCTTGCTTATAGAGTTTCTTGCTGTTTGAATTGCCTTTAAGTTTAGTATATTGAATACATACTGATTAGGAACTTTGTTTTAAATTAATGCTGCTCTTTTGGCAGACCCCTCTAGAGTCCTCGTCAGTTGATGTGGCCATCTTTTGCCTTTCATTGATGGGAACCGATTATCCAAGCTTTCTTCAGGAAGCGCGCAGAGTTCTTAAACCCAGGTTGGCATGCAGTACTTGCTTAAGTTGTAAGATACATATCTTCATCAGATAGCTTAGTTTATGAATCGAGTTGGATGGTTGTTTCCAGGGGGTGGCTTTTGATAGCAGAAGTTAAAAGCAGGCTTGATCCAACTACAGGGGGTGCAGACCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAGGTCTATTCCATTTCTTTTCGTTATGAGTTTGATGAAATCTACTACAATTTCTAAAGCTTGTCTATGTTTCTGCAGGATTTCT</genome_strand>
        <mrna_strand>ATAAGAAGTCTACTACTCAGGCCGGAGACGATCCTTCTAAGGTCTCCGGCGTGAATCAGTCTATGGTTTCGAATGTGGCGATCTCAAAAACTAAGAAACCTTTGTCTTTTCTCGATAAG.....................................................................................ATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTC.............................................................................................TGGAGATGAGGCGCTCAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCATGCAGGGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCTGACTTTGGCTGTG...........................................................................................GAGATGCACGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTTGCACATGATCCTTCAGTCATTGCTTGTGACATGTCAAAT............................................................................................................................ACCCCTCTAGAGGCCTCGTCAGTTGATGTGGCCATCTTTTGCCTTTCATTGATGGGAACCGATTATCCAAGCTTTCTTCAGGAAGCACTCAGAGTTCTTAAACCCAG........................................................................................GGGGTGGCTTTTGATAGCAGAAGTTAAAAGCAGGCTTGATCCAACTACAGGAGGAGCAGACCCAAACAATTTTTTGAAAGCTATTTGTGAGCTTGGGTTTACCATCGAGTCAAAG...........................................................................GATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449043" ref_strand="+" ref_description="SGN-E449043 [cSTS-5-O1]">
      <seq>agagaaacttcagaggagatgaaagaagcaaagcggagtcgtaaacggaagagaggaaaggttcataagaagtctactactcaggccggagacgatccttcgaaggtctccggcgtgaatcagtctatggtttcgaatgtggcgatctcaaaaactaagaaacctttgtcttttctcgataagatgaaggcgagattatcaggaggacacttccgtatgcttaatgaaaaactctacacttgctctggagatgaggcgctcaattatttcaaggaaaatcctgaactttttaatgtgtatcatgcagggtatcaggagcaaatgttacattggccagaaaaacctgttaatataatcacaaaatggctaaaggatcatagcccttcattaattgttgctgactttggctgtggagatgcacggctggcaagaagtgtgaagaacaaagtgtggtctttggatcttgttgcacatgatccttcagtcattgcttgtgacatgtcaaatacccctctagaggcctcgtcagttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="46988" stop="44443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46701" g_stop="46516" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46515" i_stop="46431" i_length="85">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46430" g_stop="46369" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46368" i_stop="46276" i_length="93">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46275" g_stop="46224" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="297" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46223" i_stop="45197" i_length="1027">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45196" g_stop="45082" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="412" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45081" i_stop="44991" i_length="91">
            <donor d_prob="0.388" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44990" g_stop="44896" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="507" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44895" i_stop="44772" i_length="124">
            <donor d_prob="0.692" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44771" g_stop="44743" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="536" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E449043" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46701" e_stop="46516"/>
          <exon e_start="46430" e_stop="46369"/>
          <exon e_start="46275" e_stop="46224"/>
          <exon e_start="45196" e_stop="45082"/>
          <exon e_start="44990" e_stop="44896"/>
          <exon e_start="44771" e_stop="44743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATCATCAGAGAAGAAGATGAAAGAAGCAAAGCGTAGTCGTAAACGGAAGAGAGGAAAGGTTCATAAGAAATCTTCCACTCCGGCCGGAAACGATCCTTCTAAGGTCTCCGGCGTGAATCAGTCTATGGTTTCGAATACGGCGATCTCAAAGACTAAGAAACCTTCGTCTTTTCTCGATAAGGTTCTAGTTGTATTTCTCCTTATATAATTATATGTATGTTCGTATTTTTACAAATAGATTTTTGATACTTGTGGAGTTTACGCAGATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTCGTATGTCTACCTTCTTCGCAAGTTGCTGCAATTTTTTCGCTGGATAATATGTTCAAATATTGATGCAATTGCTTTGCTTTTTTTGTTATCCAGAGGAGATGAGGCGCTTAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTGGTAAGAATCATTTTCTCCAATATTTTGTACTTCTACTGATAACTCAAGTTTCTTAGATTTGAGGTTGCTGTAGACTGAACTTGATTGCAAGAGATTTAGTGGGGAAAAAACAAAACTTTTAGGTCCTGAAGCTGAAAACAAAGTAAAAATTATCAAGGTCTTCAGAGAGATAAATTGTCCTGTGCCGATATTAAGAGACTTGAAATTGAACATCAAGTGGGTGCTATGGTATTTCTAAAGGTTTCTCCGGGGAAGAAAATTATGAGATTTGGTCTGAAAGGAAAACTTTGTTCTTGATTTATTGGGCCTTATGAAGTACTTGATAGAGCTAGCCTGATTGCATATGTATTAGCCTTACTACTAAGATTTGATCCGTAATGAATGAGTAATAAGGGTTTTGCATTTGCTTGGTAAGGACTAAAAGAGGATGAGAAGTTAAACAAAGGATCATTGCACCCCCTCTGTCCAATATTACTTTGTTCAATAAGGAATCTTGGCCTCTTATAGTGACTATATTATTGGTATCTGACTGAACATGAATTTAAGATGTTAATTTTGACTTACATATTATGATAGTTATGGTTTAGAGAAAGTATCATATCAAAAATAAAAGTTTGGCATATTTAATGAAGTCATGAAAGTTGTATAGAAATGAAGGTGTTAATATTTCGAGAGGAGCTGTTCAGAAGACTAAGTTGTATGTAATCCCTCATAGGAACTGTTTGAAAGACCAAGTTTGTTATCAAGGATGGCTTCTTGGAGCTATTACTTCATTTTTCTCCCTGACCTCATGTTCTTAACGACAAACTAATCACTCCTAATAAGACTTTTACTGTCTTCCACAAATACCCCCGTGTGATGGCTGGTTTATAATATCCCCTTCTGAAGTTGTATGGACTGCAACTTCTGAGTCTGATTCAACTTCAGGTTTGCAATTTATGAAACATCCTGGAGTATTTCTTGAGTTCTTGTCAATATCCCTCACCATTTAGTATCTTCTTGTTCTTAACCATACTTAGCTGGTCAGTATCATGCAGGGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCAGACTTTGGCTGCGGTATGGGTCTCAAATTATCAGGAAGCAACAAATTTCATGTGTTTATCACTTTTGCTGTTGTGTGACTCATTGATTGTCCAACTTATTGCAGGAGATGCTCGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTCGCACATGATCCTTCAGTAATTGCTTGTGACATGTCAAATGTATGAGCTTCGCTTGGAGTCTTGCTTATAGAGTTTCTTGCTGTTTGAATTGCCTTTAAGTTTAGTATATTGAATACATACTGATTAGGAACTTTGTTTTAAATTAATGCTGCTCTTTTGGCAGACCCCTCTAGAGTCCTCGTCAGTTGATGT</genome_strand>
        <mrna_strand>AGAGAAACTTCAGAG--G-AGATGAAAGAAGCAAAGCGGAGTCGTAAACGGAAGAGAGGAAAGGTTCATAAGAAGTCTACTACTCAGGCCGGAGACGATCCTTCGAAGGTCTCCGGCGTGAATCAGTCTATGGTTTCGAATGTGGCGATCTCAAAAACTAAGAAACCTTTGTCTTTTCTCGATAAG.....................................................................................ATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTC.............................................................................................TGGAGATGAGGCGCTCAATTATTTCAAGGAAAATCCTGAACTTTTTAATGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCATGCAGGGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCTGACTTTGGCTGTG...........................................................................................GAGATGCACGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTTGCACATGATCCTTCAGTCATTGCTTGTGACATGTCAAAT............................................................................................................................ACCCCTCTAGAGGCCTCGTCAGTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560032" ref_strand="+" ref_description="SGN-E560032 [19623]">
      <seq>agaaacttcagaggagatgaaagaagcaaagcggagtcgtaaacgtaagagaggaaaggttcataagaagtctactactcaggccggagacgatccttctaaggtctccggcgtgaatcagtctatggtttcgaatgtggcgatctcaaaaactaagaaacctttgtcttttctcgataagatgaaggcgagattatcaggaggacacttccgtatgcttaatgaaaaactctacacttgctctggagatgaggcgctcaattatttcaaggaaaatccagaactttttaatgtgtatcatgcagggtatcaggagcaaatgttacattggccagaaaaacctgttaatataatcacaaaatggctaaaggatcatagcccttcattaattgttgctgactttggctgtggagatgcacggcttgggcaaagaagtgtgaagaaacaaaagtgtggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="46988" stop="44781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46699" g_stop="46516" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46515" i_stop="46431" i_length="85">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46430" g_stop="46369" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="243" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46368" i_stop="46276" i_length="93">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46275" g_stop="46224" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="295" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46223" i_stop="45197" i_length="1027">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45196" g_stop="45082" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="410" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45081" i_stop="44991" i_length="91">
            <donor d_prob="0.388" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44990" g_stop="44977" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="424" r_length="14" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E560032" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46699" e_stop="46516"/>
          <exon e_start="46430" e_stop="46369"/>
          <exon e_start="46275" e_stop="46224"/>
          <exon e_start="45196" e_stop="45082"/>
          <exon e_start="44990" e_stop="44977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCATCAGAGAAGAAGATGAAAGAAGCAAAGCGTAGTCGTAAACGGAAGAGAGGAAAGGTTCATAAGAAATCTTCCACTCCGGCCGGAAACGATCCTTCTAAGGTCTCCGGCGTGAATCAGTCTATGGTTTCGAATACGGCGATCTCAAAGACTAAGAAACCTTCGTCTTTTCTCGATAAGGTTCTAGTTGTATTTCTCCTTATATAATTATATGTATGTTCGTATTTTTACAAATAGATTTTTGATACTTGTGGAGTTTACGCAGATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTCGTATGTCTACCTTCTTCGCAAGTTGCTGCAATTTTTTCGCTGGATAATATGTTCAAATATTGATGCAATTGCTTTGCTTTTTTTGTTATCCAGAGGAGATGAGGCGCTTAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTGGTAAGAATCATTTTCTCCAATATTTTGTACTTCTACTGATAACTCAAGTTTCTTAGATTTGAGGTTGCTGTAGACTGAACTTGATTGCAAGAGATTTAGTGGGGAAAAAACAAAACTTTTAGGTCCTGAAGCTGAAAACAAAGTAAAAATTATCAAGGTCTTCAGAGAGATAAATTGTCCTGTGCCGATATTAAGAGACTTGAAATTGAACATCAAGTGGGTGCTATGGTATTTCTAAAGGTTTCTCCGGGGAAGAAAATTATGAGATTTGGTCTGAAAGGAAAACTTTGTTCTTGATTTATTGGGCCTTATGAAGTACTTGATAGAGCTAGCCTGATTGCATATGTATTAGCCTTACTACTAAGATTTGATCCGTAATGAATGAGTAATAAGGGTTTTGCATTTGCTTGGTAAGGACTAAAAGAGGATGAGAAGTTAAACAAAGGATCATTGCACCCCCTCTGTCCAATATTACTTTGTTCAATAAGGAATCTTGGCCTCTTATAGTGACTATATTATTGGTATCTGACTGAACATGAATTTAAGATGTTAATTTTGACTTACATATTATGATAGTTATGGTTTAGAGAAAGTATCATATCAAAAATAAAAGTTTGGCATATTTAATGAAGTCATGAAAGTTGTATAGAAATGAAGGTGTTAATATTTCGAGAGGAGCTGTTCAGAAGACTAAGTTGTATGTAATCCCTCATAGGAACTGTTTGAAAGACCAAGTTTGTTATCAAGGATGGCTTCTTGGAGCTATTACTTCATTTTTCTCCCTGACCTCATGTTCTTAACGACAAACTAATCACTCCTAATAAGACTTTTACTGTCTTCCACAAATACCCCCGTGTGATGGCTGGTTTATAATATCCCCTTCTGAAGTTGTATGGACTGCAACTTCTGAGTCTGATTCAACTTCAGGTTTGCAATTTATGAAACATCCTGGAGTATTTCTTGAGTTCTTGTCAATATCCCTCACCATTTAGTATCTTCTTGTTCTTAACCATACTTAGCTGGTCAGTATCATGCAGGGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCAGACTTTGGCTGCGGTATGGGTCTCAAATTATCAGGAAGCAACAAATTTCATGTGTTTATCACTTTTGCTGTTGTGTGACTCATTGATTGTCCAACTTATTGCAGGAGATGCTCGGCTG</genome_strand>
        <mrna_strand>AGAAACTTCAGAG--G-AGATGAAAGAAGCAAAGCGGAGTCGTAAACGTAAGAGAGGAAAGGTTCATAAGAAGTCTACTACTCAGGCCGGAGACGATCCTTCTAAGGTCTCCGGCGTGAATCAGTCTATGGTTTCGAATGTGGCGATCTCAAAAACTAAGAAACCTTTGTCTTTTCTCGATAAG.....................................................................................ATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTC.............................................................................................TGGAGATGAGGCGCTCAATTATTTCAAGGAAAATCCAGAACTTTTTAATGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCATGCAGGGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCTGACTTTGGCTGTG...........................................................................................GAGATGCACGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548779" ref_strand="-" ref_description="SGN-E548779 [TUS-64-F12]">
      <seq>tataatagaccgaagtacaacacgactcaccctctgagtctttcaaaacaatcaaaataacattcaaactcatgctattaaaattttataccttcttccatttaataagttttatatagcatgtcatattcaaccaatagtagtatatgtcttcggttcctgataattgctagtgactgaatactattttattctaaatcataaaatattttagaaaatacatacctgatcttatgcaaataataccttgattctcatatcgagatcaaccaaaacatgagttaaagaaaaaactaaaactcactctcaattagctagagactcgtgctgataacgtgttataaaagaacttactaaaattctaaaaaaaaaaaaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="48595" stop="47647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48295" g_stop="47936" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="380"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E548779" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548779" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48295" e_stop="47936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATAGACCGAAGTACAACATGACTCACCCTTTGAGTCTTTCAAAATAATCAAAATAACATTCAAACTCATGCTATTAAAATTTTACA-CTTCTTCAATTTAAGAAGTTTTATATAGCATGTCATATTCAACCAATAATAGTATATGTCTTCGGTTCGTGATAATTGTTAGTGACTGAATACTATTTTTATTCTAAATCATAAAAATATTCTAGAAAATACATACCTGATTTTATGCATATAATAATACCTTGATTCTCATAACAAGATCAACCAAAACATGAGTTAAAG-AAAAACTAAAACTCAATCTTAATTGGCTAGAGACTCGTGCTGATAACGTGTTATAAAATCAAGCTCATG</genome_strand>
        <mrna_strand>TATAATAGACCGAAGTACAACACGACTCACCCTCTGAGTCTTTCAAAACAATCAAAATAACATTCAAACTCATGCTATTAAAATTTTATACCTTCTTCCATTTAATAAGTTTTATATAGCATGTCATATTCAACCAATAGTAGTATATGTCTTCGGTTCCTGATAATTGCTAGTGACTGAATACTA-TTTTATTCTAAATCAT-AAAATATTTTAGAAAATACATACCTGATCTTATGC--A-AATAATACCTTGATTCTCATATCGAGATCAACCAAAACATGAGTTAAAGAAAAAACTAAAACTCACTCTCAATTAGCTAGAGACTCGTGCTGATAACGTGTTATAAAA-GAA-CTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="47647" stop="48635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47947" g_stop="48335" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="421" r_length="386" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47947" e_stop="48335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAG-TTTTTCTTTAACTCATGTTTTGGTTGATCTTGTTATGAGAATCAAGGTATTATTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAAATAGTATTCAGTCACTAACAATTATCACGAACCGAAGACATATACTATTATTGGTTGAATATGACATGCTATATAAAACTTCTTAAATTGAAGAA-GTGTAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTATTTTGAAAGACTCAAAGGGTGAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGACGATGGATTCAAGTTTCATCG</genome_strand>
        <mrna_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTA-T-T-TGCATAAGATCAGGTATGTATTTTCTAAAATA-TTTTATGATTTAGAAT-AAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542836" ref_strand="+" ref_description="SGN-E542836 [TUS-64-F12](-)">
      <seq>aaaatgatgactaagaaaatcattatatttttgatgaaaatgtctgaaaattcatcatattgaatttgctccattccttgaaaagaatgtggtagcaacatgtgataactctgaaatccgcctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtctgaaagatgacaaataattaatgatatgaataaaggcgtggaaggacagaattataatagtcatcattgtggtaatgataaaaggaataacaatatgagttcttcaaatagtccttcaaaatgtgaagacaatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="48398" stop="49513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48571" g_stop="49213" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="676" r_length="647" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E542836" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48571" e_stop="49213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGAAAA-GTCTTGAAATCCGTCCTATTGAATTTGCTCC-TTCCTTGAAAAAAATGTGGTAACAACATATGATAATTTTGAAAT-CGCATGTTCACTTGCTCCATTCTATCGTATGAATGTGGTA-AACTAAATAGTTAGTCTGAAAGATGACAAATGATTAACGATATGAAAAAAGGCATGAAGGGACAGAATTATAATAGTCATCATTGTGGTAATTATAAAAGGAAGAACACTATGGGTTCTCCAAATAGTCCTTCGAAATGTGAAGGCAGTTTTCATTATCAAAATGCTATGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAATTTATAAATCTTCTATCATGATACAAGAAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATGTGTTTATAATGCAAATTTATAAAGTACATATAAATAATTAGTTCAATCCTTGAAGAGAATGTGACTTGTAATAAGTATCGTGAATGCTCGGCCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATACGTCACAACTCACCTCTATAGAAGGTTTGAGAAATGATACA</genome_strand>
        <mrna_strand>TTTGATGAAAATGTCTGAAAATTCATCATATTGAATTTGCTCCATTCCTTGAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGCCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATGATATGAATAAAGGCGTGGAAGGACAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAATAACAATATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGACAATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAGGTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204533" ref_strand="-" ref_description="SGN-E204533 [cLEC-24-G13]">
      <seq>aatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="48543" stop="49513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48843" g_stop="49196" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="379"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E204533" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48843" e_stop="49196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCATTATCAAAATGCTATGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAATTTATAAATCTTCTATCATGATACAAGAAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATGTGTTTATAATGCAAATTTATAAAGTACATATAAATAATTAGTTCAATCCTTGAAGAGAATGTGACTTGTAATAAGTATCGTGAATGCTCGGCCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATACGTCACAACTCACCTCTATAGAAG</genome_strand>
        <mrna_strand>AATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="51616" stop="50341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51316" g_stop="50641" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51316" e_stop="50641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTCTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATATCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATTTTACGGTTATATTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTCTTCACACTATATGACAAATTTGAATTCAAGATCCTCATCATAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGGCGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGAACATATTGATCATTTGCTCTTTCCTTCTTCAAGGAATTTTATATTTGGAATCAATTTGTCTATTACGCTTCCGGCGTATCATAGGCTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="51616" stop="50614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51316" g_stop="50914" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51316" e_stop="50914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTCTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATATCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATTTTACGGTTATATTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTCTTCACACTATATGACAAATTTGAATTCAAGATCCTCATCATAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="50622" stop="51899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50922" g_stop="51599" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50922" e_stop="51599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGATCTTGAATTCAAATTTGTCATATAGTGTGAAGAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAATATAACCGTAAAATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGATATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGAGAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGCTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCAACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTAATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATCACTTGAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="50624" stop="51777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50923" g_stop="51477" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50923" e_stop="51477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGATCTTGAATTCAAATTTGTCATATAGTGTGAAGAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAATATAACCGTAAAATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGATATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGAGAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGCTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCAACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="50627" stop="51680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50927" g_stop="51380" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50927" e_stop="51380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTCAAATTTGTCATATAGTGTGAAGAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAATATAACCGTAAAATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGATATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGAGAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGCTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="50671" stop="51853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50971" g_stop="51553" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50971" e_stop="51553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAATATAACCGTAAAATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGATATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGAGAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGCTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCAACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTAATATGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="51029" stop="52037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51329" g_stop="51737" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51329" e_stop="51737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCAACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTAATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208613" ref_strand="+" ref_description="SGN-E208613 [cLEC-39-E19]">
      <seq>aagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtcataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggcgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="51105" stop="52185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51405" g_stop="51885" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E208613" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51405" e_stop="51885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCAACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTAATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCAAAGGACCATAGTTATGGGTTTATTCTATTCCGAGGAATCCAACACAAAATTGATTGGTTACGCAAATGCAGAATATTTA</genome_strand>
        <mrna_strand>AAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGCGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221041" ref_strand="+" ref_description="SGN-E221041 [cLEL-22-M5](-)">
      <seq>gctgttgtccctgtggcttatggcttttacaagaagtcacggtgaagcatgttaacttgggacaaactttgtgctcaagagttttcgggtatctaggttttgtagagaggtaataatgttcgagataatctcggacactgaaaatgcatacatatttggtatatttagagaaaattaaatgcaatgtgtaattcgactatggagagcagctcctttgctcgttcccagtaagaactagaaggggtgataaatataaagtgccaactaagtgctacatgtagaatgatagtttttacttctcttgcttgggattgagggtgattttatgtgatgtgttatgggcagatttgcttttttcttcttgtgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="56143" stop="55175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55843" g_stop="55475" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="385"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E221041" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55843" e_stop="55475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTACATGTAGAATGATAGTTTTTACTTCTCTTGCTTGGGATTGAGGGTGATTTTATGTGATGTGTTATGGGCAGATTTGCTTTTTTCTTCTTGTGAAA</genome_strand>
        <mrna_strand>GCTGTTGTCCCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAGAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTACATGTAGAATGATAGTTTTTACTTCTCTTGCTTGGGATTGAGGGTGATTTTATGTGATGTGTTATGGGCAGATTTGCTTTTTTCTTCTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207476" ref_strand="+" ref_description="SGN-E207476 [cLEC-36-M9]">
      <seq>cacggtgaagcatgttaacttgggacaaactttgtgctcaagagttttcgggtatctaggttttgtagaaaggtaataatgttcgagataatctcggacactgaaaatgcatacatatttggtatatttagagaaaattaaatgcaatgtgtaattcgactatggagagcagctcctttgctcgttcccagtaagaactagaaggggtgataaatataaagtgccaactaagtgctacatgtagaatgatagtttttacttctcttgcttgggattgagggtgattttatgtgatgtgttatgggcagatttgctttaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="56106" stop="55190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55806" g_stop="55475" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E207476" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55806" e_stop="55475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTACATGTAGAATGATAGTTTTTACTTCTCTTGCTTGGGATTGAGGGTGATTTTATGTGATGTGTTATGGGCAGATTTGCTTTTTTCTTCTTGTGAAA</genome_strand>
        <mrna_strand>CACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTACATGTAGAATGATAGTTTTTACTTCTCTTGCTTGGGATTGAGGGTGATTTTATGTGATGTGTTATGGGCAGATTTGCTTTAANAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462205" ref_strand="-" ref_description="SGN-E462205 [cPRO-10-P10]">
      <seq>aagtatgctggtaatgttataatcttcagctcaggaaaggacggagatattgttggccactggtatggctatgttacgccaagtgatgtacctgctttgcttgatgagcatattggagagggaaaagtcattgaacgactttggaggggccaaatgggacaatatgagaaggtaactgataaagtagatgaacagaaggttcctgaagtaaccaatgaagagaagaagcctcttgaaaatggaagtcaggagagtagtgtaactagtttcagctgttgccaaggtgctgcgggagtttcttgttgtagagatgcaagtgctgagcagaaagagaacaagaaagggcagggaacagtttcaaactggttcggcaaatgggagcagcatgaaatactcgcagctgtaggtgtggttggagcagtggctgttgtcgctgtggcttatggcttttacaagaagtcacggtgaagcaatgttaactcgggacaaactttgtgctcaagagttttcgggtatctaggttttgtagaaaggtaataatgttcgagataatctcggacactgaaaatgcatacatatttggtatattgagagaattaaatgcgatttgtaattcgactatggagatgagctcctttgctcgttcccagtaagaactagaggggctgataaatatgaagtgccaaccgattgctacatgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="60810" stop="55256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60510" g_stop="60449" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60448" i_stop="59968" i_length="481">
            <donor d_prob="0.803" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59967" g_stop="59884" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="146" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59883" i_stop="56124" i_length="3760">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56123" g_stop="55553" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="713" r_length="567" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E462205" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462205" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60510" e_stop="60449"/>
          <exon e_start="59967" e_stop="59884"/>
          <exon e_start="56123" e_stop="55553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGGAATATTGTTGGCCACTGGTAAGTCATATTTTTCAACGGACGACCTGGAATTTCACCACTAGCCTCCAGATCAATTTGTAATCTAACAACGGTAGCATGATTGAAAATGTTATTTTCATGAAGATAAAGTTATTTTTAAAATCTCTTACCTTGCAAACTATTATATACTGATAAAGGAGATGGAAGGTGGGAGATGGGTCATGTGGGGTCGGTGGGTGATATTTTCAAGTGCCAAATATTGACTCCATTAGTTACATATTGGTTGAAGCAAGTGCAATAAAGTAAGAGTTGTGGTACATTAGAGGAATGGTCATTTTCTCCATTCAGTGCAAAACATTTTCGTTGTGAGAAGATGTTGAACAATTAAGCCTACCTAGAAAATGATTTTGCAAAGAAAAACACACATTGCAAGCAGCATATCAAAGATCAATAAAGAAACTTTGCCTTAAGACTGTCCATTACATACATGTTATATGTGCTCTATGTTGTGTTAGTGCAGGTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAGGTTTGTATTGATTGTCCTCTCCCTTTTTTTTCTTTGCATGCTTTAGTGCTGTTTTGCTTCATGGCACAGCTAAATCACGAGGAAGTATCTTAATGTTTTCCATGGTTTTAATTCTAGGTAGATGTATATATTACTCTTCAACTATGAGATTGTGCTCAACATACTCTATAACTGCAATTGTGCTTATTCCTATGCCATTTTTGTCTATCCTTTCATTTTGAGGGAGCAACAGTTGCTTCCTTTTCCTTACAGGTTTAGGATGGGAACATGTTACTTATTTAATTTACTATCACAGTATCACTCACTCCTCTTCTGTCACGACCCAAAAATGGACGTGATGGCACTTATCTTATCCCACCAAGACAAGTCAGCCTAAAACTCAACTTATTACAATAAAATGCGGAAAATTTACTATCGACTTATATTATACCCCAAAACCTGGTTGTCACGTGTACAGGCCTCTAAAGTATTACAATTGATTCAAAAGAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGAACATAATTAAGGAGAAGAAAGTCTGCTGCAATGGAAATAGCTACCTGACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCTAGGCTCATAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACGTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCAATCGAACCTCCACAATTACAAACTACATAAAATCCAGTCTAACCTAACAGTTCATATTTACATAGCACGTAACTCTACAACAACACTTAGACAAATTACATATACATCCTCCACAACCACACTTTACCAAATTACATATCCTCAATAACAACACTTCAACAAATTATATATCCTCGATAAAAACACTTCAACAAATTGCATACCCTTAACAACAACAATTCAACAAATTACATATCCTCAATAACAAGCTCAGTATTCATCAATCACAAATTTCGCAGAAAGTCAATCACAAGATCAGCAAAACACAATATCAAGTTCACCAATGATAAGTATGTGTAATGCAATGTCAAGTATAATGATGCATGTCTGACTTATTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGTGCGACACGACCCTCGATAATAATAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTCTCATTCTTTCTCAATGCACATAACACTTTTCACAATCATGTCATCAAAATAATGCAATGCCATGTTCATACAAAAATAAAGAGGATATCACTATTTTAATAACATTACACAATTCACAACAACATCAACAATGATTCAACAAGCCTTTCAAATCATTCTCCATTATCAACACATCACACACAACCCATTATTCACATTGCCTTTTATTACCCTTTTGTTTTCCTCATTAGAATTAATCAATGTGGACAAATCAACCCATCACCAAGTCCCATTACTCCCAAACATATAGCATAAGGAAATACATGCATTCCATACACTTAACAAGAGTTTAGAAATTCACTTGCCTCAATTTATCGAACAGTCACTCCGGGACTTTAGTCTTCCCCCTTTGTTGCACTTCCAAATAAAATTCAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTATACTAAACCAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTCAAGATTAGGATTAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATATATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCGCTTCTAGGTTAAAGGGAAGCACTAGACTCACTCCACGGGAACTCGCTTTTCGGTTTGCTTCAGATTTGGCATTCATTCCCCTTCCCTTTCCTGATGCAATTCAAATTGACAAGTAGTAGTGACAGCATAATAAATGTCCGGAGGACAGAACAAAATCTTTAATTCCCGGGTTTCCTTAAATTTATATCACCCATATTTGAACACCAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCCCTTCCCAATAATTGTTTCATGATCATCAACAATTGGTCATAATTACTCAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAAAATTAAAATTAGTTTCACATAGTGGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTACATAAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTCCCTTTTCTTTTCTCCCTTTCTTTTCTTTTTTTCTCTGCCTTTTTTTTCTTTTTCAAATCGTTTTTTTTTTCCTCAAATAAGCCGTCATAGGCTTTTTATAAGTTTAGGACACTTTGCCCCTTTTCTTTTTATTTTATTTTATTTATTTAATTAATTAATTTCCTTTTCTTTCTTTTTTTCATTACTATTAGCAACAAAAAAAATCTTTTATTAAATCTAAAAATCGTGTCACTCATTCTTACAAGTCATATAAATTATTTATAAAATCTACTAAAAAGGTTAATATAAAAAATAATAGTTGAAATTTCTAAAACGACTAAGAGGGTCGTTACATCTTCCTACTAATTAAGTAACAAAAGGTTGTCTCTTATAAAATTAGGACAAAGAAATGGTTGTTAACGGTGCATAAGGGGGGTATCAGAGGATGATGGATCCCTTGTTATCTGGATCTGTGTTTGTTTGTCCCTCTAGTTATTTGGTTGGTGTTGGATGCCTATGCTTAGCATCAATTTTAAGACAGGTAGAGAGTTGATTTGTCTGTTGTTTAAAAAAATCTTCTTCACTTTTGCTATCTGATTATCTCATAGCGTGGCGAAGTTTGATTGCTTTCCATACTATTTGGTCTAGTGGTAAGGTGATCCTGCTCCCATTGCAGAAAAAACATACTTGGGTTTAAGAGTGTTATCAGTTGGAAATTCTGTGTGGAGATTTTTCCATTATTAATAAAATTATTTTCCTTTTAAAAAATCACATGGATGCTGTATGTTGAAAGTATTATATTATATATCCCATGTAATGGGCATAAATTTCAGAAACTCGGAGTTTATTCCTTTCTCCGCATCTCATCGTCTTTATTTGATCAGGAGGGAAACTTGTTAATCTTTAATTATTTGTCTCTTAGTAAGAATTCATTATGTTTAAACAGTCGACTAGTCCTTGATTGAGATAATATTTGGATCTGTCTCCATAATGGTTAGACTATTTCTATGAGTGCTTGGGGGAAGCCATACCCCTTTATTAGGATTAATTGCTTCAATGCGGTCACTATTTGCTAGATTTGATGCTTTGGTTGGCCTAAATCATGCTTCTTGATCTGTAAAATTTACGGATGGAGGAAACGTCTTCAGCACTGCTGCAAAAATTGATATGTTGCTTTTATTTTTTAAATTGCTGTTATCACAGATGTTTTACAACTCTACTCTGATCAATTGTAGGGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGC-ATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTACATGTAGAATGATAGTT</genome_strand>
        <mrna_strand>AAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGAGATATTGTTGGCCACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTAGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAGAAGAAGCCTCTTGAAAATGG---AAGTCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCATGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCAATGTTAACTCGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATA-TT-GAGAGAATTAAATGCGATTTGTAATTCGACTATGGAGATGAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAGGGGCTGATAAATATGAAGTGCCAACCGATTGCTACATGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352774" ref_strand="+" ref_description="SGN-E352774 [cTOS-11-N2]">
      <seq>tgctttgcttgatgagcatattggagagggaaaagtcattgaacgactttggaggggccaaatgggacaatatgagaaggtaactgataaagtggatgaacagaaggttcctgaagtaaccaatgaagaaaagaagtctcttgaaaatggaaaaagccaggagagtagtgtaactagtttcagctgttgccaaggtgctgcgggagtttcttgttgtagagatgcaagtgctgagcagaaagagaacaagaaagggcagggaacagtttcaaactggttcggcaaatgggagcagcgtgaaatactcgcagctgtaggtgtggttggagcagtggctgttgtcgctgtggcttatggcttttacaagaagtcacggtgaagcatgttaacttgggacaaactttgtgctcaagagttttcgggtatctangttttgtagaaaggtaataatgttcgagataatctcggacactgaaaatgcatacatatttggtatatttagagaaaattaaatgcaatgtgtaattcgactatggagagcagctccctttgctcgttcccagtaagaactagaaagggtgataaatataaaagtgccaactaagtgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="60237" stop="55268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59937" g_stop="59884" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59883" i_stop="56124" i_length="3760">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56123" g_stop="55561" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="619" r_length="565" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E352774" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59937" e_stop="59884"/>
          <exon e_start="56123" e_stop="55561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAGGTTTGTATTGATTGTCCTCTCCCTTTTTTTTCTTTGCATGCTTTAGTGCTGTTTTGCTTCATGGCACAGCTAAATCACGAGGAAGTATCTTAATGTTTTCCATGGTTTTAATTCTAGGTAGATGTATATATTACTCTTCAACTATGAGATTGTGCTCAACATACTCTATAACTGCAATTGTGCTTATTCCTATGCCATTTTTGTCTATCCTTTCATTTTGAGGGAGCAACAGTTGCTTCCTTTTCCTTACAGGTTTAGGATGGGAACATGTTACTTATTTAATTTACTATCACAGTATCACTCACTCCTCTTCTGTCACGACCCAAAAATGGACGTGATGGCACTTATCTTATCCCACCAAGACAAGTCAGCCTAAAACTCAACTTATTACAATAAAATGCGGAAAATTTACTATCGACTTATATTATACCCCAAAACCTGGTTGTCACGTGTACAGGCCTCTAAAGTATTACAATTGATTCAAAAGAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGAACATAATTAAGGAGAAGAAAGTCTGCTGCAATGGAAATAGCTACCTGACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCTAGGCTCATAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACGTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCAATCGAACCTCCACAATTACAAACTACATAAAATCCAGTCTAACCTAACAGTTCATATTTACATAGCACGTAACTCTACAACAACACTTAGACAAATTACATATACATCCTCCACAACCACACTTTACCAAATTACATATCCTCAATAACAACACTTCAACAAATTATATATCCTCGATAAAAACACTTCAACAAATTGCATACCCTTAACAACAACAATTCAACAAATTACATATCCTCAATAACAAGCTCAGTATTCATCAATCACAAATTTCGCAGAAAGTCAATCACAAGATCAGCAAAACACAATATCAAGTTCACCAATGATAAGTATGTGTAATGCAATGTCAAGTATAATGATGCATGTCTGACTTATTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGTGCGACACGACCCTCGATAATAATAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTCTCATTCTTTCTCAATGCACATAACACTTTTCACAATCATGTCATCAAAATAATGCAATGCCATGTTCATACAAAAATAAAGAGGATATCACTATTTTAATAACATTACACAATTCACAACAACATCAACAATGATTCAACAAGCCTTTCAAATCATTCTCCATTATCAACACATCACACACAACCCATTATTCACATTGCCTTTTATTACCCTTTTGTTTTCCTCATTAGAATTAATCAATGTGGACAAATCAACCCATCACCAAGTCCCATTACTCCCAAACATATAGCATAAGGAAATACATGCATTCCATACACTTAACAAGAGTTTAGAAATTCACTTGCCTCAATTTATCGAACAGTCACTCCGGGACTTTAGTCTTCCCCCTTTGTTGCACTTCCAAATAAAATTCAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTATACTAAACCAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTCAAGATTAGGATTAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATATATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCGCTTCTAGGTTAAAGGGAAGCACTAGACTCACTCCACGGGAACTCGCTTTTCGGTTTGCTTCAGATTTGGCATTCATTCCCCTTCCCTTTCCTGATGCAATTCAAATTGACAAGTAGTAGTGACAGCATAATAAATGTCCGGAGGACAGAACAAAATCTTTAATTCCCGGGTTTCCTTAAATTTATATCACCCATATTTGAACACCAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCCCTTCCCAATAATTGTTTCATGATCATCAACAATTGGTCATAATTACTCAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAAAATTAAAATTAGTTTCACATAGTGGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTACATAAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTCCCTTTTCTTTTCTCCCTTTCTTTTCTTTTTTTCTCTGCCTTTTTTTTCTTTTTCAAATCGTTTTTTTTTTCCTCAAATAAGCCGTCATAGGCTTTTTATAAGTTTAGGACACTTTGCCCCTTTTCTTTTTATTTTATTTTATTTATTTAATTAATTAATTTCCTTTTCTTTCTTTTTTTCATTACTATTAGCAACAAAAAAAATCTTTTATTAAATCTAAAAATCGTGTCACTCATTCTTACAAGTCATATAAATTATTTATAAAATCTACTAAAAAGGTTAATATAAAAAATAATAGTTGAAATTTCTAAAACGACTAAGAGGGTCGTTACATCTTCCTACTAATTAAGTAACAAAAGGTTGTCTCTTATAAAATTAGGACAAAGAAATGGTTGTTAACGGTGCATAAGGGGGGTATCAGAGGATGATGGATCCCTTGTTATCTGGATCTGTGTTTGTTTGTCCCTCTAGTTATTTGGTTGGTGTTGGATGCCTATGCTTAGCATCAATTTTAAGACAGGTAGAGAGTTGATTTGTCTGTTGTTTAAAAAAATCTTCTTCACTTTTGCTATCTGATTATCTCATAGCGTGGCGAAGTTTGATTGCTTTCCATACTATTTGGTCTAGTGGTAAGGTGATCCTGCTCCCATTGCAGAAAAAACATACTTGGGTTTAAGAGTGTTATCAGTTGGAAATTCTGTGTGGAGATTTTTCCATTATTAATAAAATTATTTTCCTTTTAAAAAATCACATGGATGCTGTATGTTGAAAGTATTATATTATATATCCCATGTAATGGGCATAAATTTCAGAAACTCGGAGTTTATTCCTTTCTCCGCATCTCATCGTCTTTATTTGATCAGGAGGGAAACTTGTTAATCTTTAATTATTTGTCTCTTAGTAAGAATTCATTATGTTTAAACAGTCGACTAGTCCTTGATTGAGATAATATTTGGATCTGTCTCCATAATGGTTAGACTATTTCTATGAGTGCTTGGGGGAAGCCATACCCCTTTATTAGGATTAATTGCTTCAATGCGGTCACTATTTGCTAGATTTGATGCTTTGGTTGGCCTAAATCATGCTTCTTGATCTGTAAAATTTACGGATGGAGGAAACGTCTTCAGCACTGCTGCAAAAATTGATATGTTGCTTTTATTTTTTAAATTGCTGTTATCACAGATGTTTTACAACTCTACTCTGATCAATTGTAGGGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCT-CCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATAT-AAAGTGCCAACTAAGTGCTACATGTAGAA</genome_strand>
        <mrna_strand>TGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTANGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCCTTTGCTCGTTCCCAGTAAGAACTAGAAAGGGTGATAAATATAAAAGTGCCAACTAAGTGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352749" ref_strand="+" ref_description="SGN-E352749 [cTOS-11-F4]">
      <seq>tgctttgcttgatgagcatattggagagggaaaagtcattgaacgactttggaggggccaaatgggacaatatgagaaggtaactgataaagtggatgaacagaaggttcctgaagtaaccaatgaagaaaagaagtctcttgaaaatggaaaaagccaggagagtagtgtaactagtttcagctgttgccaaggtgctgcgggagtttcttgttgtagagatgcaagtgctgagcagaaagagaacaagaaagggcagggaacagtttcaaactggttcggcaaatgggagcagcgtgaaatactcgcagctgtaggtgtggttggagcagtggctgttgtcgctgtggcttatggcttttacaagaagtcacggtgaagcatgttaacttgggacaaactttgtgctcaagagttttcgggtatctaggttttgtagaaaggtaataatgttcgagataatctcggacactgaaaatgcatacatatttggtatatttagagaaaattaaatgcaatgtgtaattcgactatggagagcagctcctttgctcgttcccagtaagaactagaaggggtgataaatataaagtgccaactaagtgctnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="60237" stop="55268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59937" g_stop="59884" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59883" i_stop="56124" i_length="3760">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56123" g_stop="55561" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="617" r_length="563" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E352749" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59937" e_stop="59884"/>
          <exon e_start="56123" e_stop="55561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAGGTTTGTATTGATTGTCCTCTCCCTTTTTTTTCTTTGCATGCTTTAGTGCTGTTTTGCTTCATGGCACAGCTAAATCACGAGGAAGTATCTTAATGTTTTCCATGGTTTTAATTCTAGGTAGATGTATATATTACTCTTCAACTATGAGATTGTGCTCAACATACTCTATAACTGCAATTGTGCTTATTCCTATGCCATTTTTGTCTATCCTTTCATTTTGAGGGAGCAACAGTTGCTTCCTTTTCCTTACAGGTTTAGGATGGGAACATGTTACTTATTTAATTTACTATCACAGTATCACTCACTCCTCTTCTGTCACGACCCAAAAATGGACGTGATGGCACTTATCTTATCCCACCAAGACAAGTCAGCCTAAAACTCAACTTATTACAATAAAATGCGGAAAATTTACTATCGACTTATATTATACCCCAAAACCTGGTTGTCACGTGTACAGGCCTCTAAAGTATTACAATTGATTCAAAAGAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGAACATAATTAAGGAGAAGAAAGTCTGCTGCAATGGAAATAGCTACCTGACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCTAGGCTCATAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACGTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCAATCGAACCTCCACAATTACAAACTACATAAAATCCAGTCTAACCTAACAGTTCATATTTACATAGCACGTAACTCTACAACAACACTTAGACAAATTACATATACATCCTCCACAACCACACTTTACCAAATTACATATCCTCAATAACAACACTTCAACAAATTATATATCCTCGATAAAAACACTTCAACAAATTGCATACCCTTAACAACAACAATTCAACAAATTACATATCCTCAATAACAAGCTCAGTATTCATCAATCACAAATTTCGCAGAAAGTCAATCACAAGATCAGCAAAACACAATATCAAGTTCACCAATGATAAGTATGTGTAATGCAATGTCAAGTATAATGATGCATGTCTGACTTATTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGTGCGACACGACCCTCGATAATAATAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTCTCATTCTTTCTCAATGCACATAACACTTTTCACAATCATGTCATCAAAATAATGCAATGCCATGTTCATACAAAAATAAAGAGGATATCACTATTTTAATAACATTACACAATTCACAACAACATCAACAATGATTCAACAAGCCTTTCAAATCATTCTCCATTATCAACACATCACACACAACCCATTATTCACATTGCCTTTTATTACCCTTTTGTTTTCCTCATTAGAATTAATCAATGTGGACAAATCAACCCATCACCAAGTCCCATTACTCCCAAACATATAGCATAAGGAAATACATGCATTCCATACACTTAACAAGAGTTTAGAAATTCACTTGCCTCAATTTATCGAACAGTCACTCCGGGACTTTAGTCTTCCCCCTTTGTTGCACTTCCAAATAAAATTCAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTATACTAAACCAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTCAAGATTAGGATTAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATATATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCGCTTCTAGGTTAAAGGGAAGCACTAGACTCACTCCACGGGAACTCGCTTTTCGGTTTGCTTCAGATTTGGCATTCATTCCCCTTCCCTTTCCTGATGCAATTCAAATTGACAAGTAGTAGTGACAGCATAATAAATGTCCGGAGGACAGAACAAAATCTTTAATTCCCGGGTTTCCTTAAATTTATATCACCCATATTTGAACACCAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCCCTTCCCAATAATTGTTTCATGATCATCAACAATTGGTCATAATTACTCAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAAAATTAAAATTAGTTTCACATAGTGGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTACATAAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTCCCTTTTCTTTTCTCCCTTTCTTTTCTTTTTTTCTCTGCCTTTTTTTTCTTTTTCAAATCGTTTTTTTTTTCCTCAAATAAGCCGTCATAGGCTTTTTATAAGTTTAGGACACTTTGCCCCTTTTCTTTTTATTTTATTTTATTTATTTAATTAATTAATTTCCTTTTCTTTCTTTTTTTCATTACTATTAGCAACAAAAAAAATCTTTTATTAAATCTAAAAATCGTGTCACTCATTCTTACAAGTCATATAAATTATTTATAAAATCTACTAAAAAGGTTAATATAAAAAATAATAGTTGAAATTTCTAAAACGACTAAGAGGGTCGTTACATCTTCCTACTAATTAAGTAACAAAAGGTTGTCTCTTATAAAATTAGGACAAAGAAATGGTTGTTAACGGTGCATAAGGGGGGTATCAGAGGATGATGGATCCCTTGTTATCTGGATCTGTGTTTGTTTGTCCCTCTAGTTATTTGGTTGGTGTTGGATGCCTATGCTTAGCATCAATTTTAAGACAGGTAGAGAGTTGATTTGTCTGTTGTTTAAAAAAATCTTCTTCACTTTTGCTATCTGATTATCTCATAGCGTGGCGAAGTTTGATTGCTTTCCATACTATTTGGTCTAGTGGTAAGGTGATCCTGCTCCCATTGCAGAAAAAACATACTTGGGTTTAAGAGTGTTATCAGTTGGAAATTCTGTGTGGAGATTTTTCCATTATTAATAAAATTATTTTCCTTTTAAAAAATCACATGGATGCTGTATGTTGAAAGTATTATATTATATATCCCATGTAATGGGCATAAATTTCAGAAACTCGGAGTTTATTCCTTTCTCCGCATCTCATCGTCTTTATTTGATCAGGAGGGAAACTTGTTAATCTTTAATTATTTGTCTCTTAGTAAGAATTCATTATGTTTAAACAGTCGACTAGTCCTTGATTGAGATAATATTTGGATCTGTCTCCATAATGGTTAGACTATTTCTATGAGTGCTTGGGGGAAGCCATACCCCTTTATTAGGATTAATTGCTTCAATGCGGTCACTATTTGCTAGATTTGATGCTTTGGTTGGCCTAAATCATGCTTCTTGATCTGTAAAATTTACGGATGGAGGAAACGTCTTCAGCACTGCTGCAAAAATTGATATGTTGCTTTTATTTTTTAAATTGCTGTTATCACAGATGTTTTACAACTCTACTCTGATCAATTGTAGGGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTACATGTAGAA</genome_strand>
        <mrna_strand>TGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTNAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592038" ref_strand="-" ref_description="SGN-E592038 [45763]">
      <seq>caagctcattgagtcccaagggcttgtaaagacaaagttcgtgtgcagccttgttctcatattggtgcccacaaatatgctggtaatgcttataatcttcagctcaggaaaggacggggatattgttggccactggtatggctatgttacgccaagtgatgtacctgctttgcttgatgagcatattggagagggaaaagtcattgaacgactttggaggggccaaatgggacaatatgagaaggtaactgataaagtggatgaacagaaggttcctgaagtaaccaatgaagaaaagaagcctcttgaaaatggaagtcaggagagtagtgtaactagtttcagctgttgccaaggtgctgcgggagtttcttgttgtagagatgcaagtgctgagcaggaagagaacaagaaagggcagggaacagtttcaaactggttcggcaaatgggagcagcgtgaaatactcgcagctgtaggtgtggttggagcagtggctgttgtcgctgtggcttatggcttttacaagaagtcacggtgaagcatgttaactcgggacaaactttgtgctcaagagtttttgggtatctaggttttgtagaaaggtaataatgttcgagataatctcggacactgaaaatgcatacatatttggtatattgagaggaattaaatgcgatttgtaattcgactatggagatgagctcctttgctcgttcccagtaagaactagaggggctgataaatatgaagtgccaactgattgctacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="60880" stop="55268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60580" g_stop="60449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60448" i_stop="59968" i_length="481">
            <donor d_prob="0.803" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59967" g_stop="59884" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="219" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59883" i_stop="56124" i_length="3760">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56123" g_stop="55565" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="774" r_length="555" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E592038" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592038" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60580" e_stop="60449"/>
          <exon e_start="59967" e_stop="59884"/>
          <exon e_start="56123" e_stop="55565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTCATTGAGT-CCAAGAGCTTG-AAAGACAAAGTTCGTGTGACAGCTTGTTCTCATATTGGTGGCCACAAGTATGCTGGTAATG-TTATAATCTTCAGCTCAGGAAAGGACGGGAATATTGTTGGCCACTGGTAAGTCATATTTTTCAACGGACGACCTGGAATTTCACCACTAGCCTCCAGATCAATTTGTAATCTAACAACGGTAGCATGATTGAAAATGTTATTTTCATGAAGATAAAGTTATTTTTAAAATCTCTTACCTTGCAAACTATTATATACTGATAAAGGAGATGGAAGGTGGGAGATGGGTCATGTGGGGTCGGTGGGTGATATTTTCAAGTGCCAAATATTGACTCCATTAGTTACATATTGGTTGAAGCAAGTGCAATAAAGTAAGAGTTGTGGTACATTAGAGGAATGGTCATTTTCTCCATTCAGTGCAAAACATTTTCGTTGTGAGAAGATGTTGAACAATTAAGCCTACCTAGAAAATGATTTTGCAAAGAAAAACACACATTGCAAGCAGCATATCAAAGATCAATAAAGAAACTTTGCCTTAAGACTGTCCATTACATACATGTTATATGTGCTCTATGTTGTGTTAGTGCAGGTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAGGTTTGTATTGATTGTCCTCTCCCTTTTTTTTCTTTGCATGCTTTAGTGCTGTTTTGCTTCATGGCACAGCTAAATCACGAGGAAGTATCTTAATGTTTTCCATGGTTTTAATTCTAGGTAGATGTATATATTACTCTTCAACTATGAGATTGTGCTCAACATACTCTATAACTGCAATTGTGCTTATTCCTATGCCATTTTTGTCTATCCTTTCATTTTGAGGGAGCAACAGTTGCTTCCTTTTCCTTACAGGTTTAGGATGGGAACATGTTACTTATTTAATTTACTATCACAGTATCACTCACTCCTCTTCTGTCACGACCCAAAAATGGACGTGATGGCACTTATCTTATCCCACCAAGACAAGTCAGCCTAAAACTCAACTTATTACAATAAAATGCGGAAAATTTACTATCGACTTATATTATACCCCAAAACCTGGTTGTCACGTGTACAGGCCTCTAAAGTATTACAATTGATTCAAAAGAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGAACATAATTAAGGAGAAGAAAGTCTGCTGCAATGGAAATAGCTACCTGACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCTAGGCTCATAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACGTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCAATCGAACCTCCACAATTACAAACTACATAAAATCCAGTCTAACCTAACAGTTCATATTTACATAGCACGTAACTCTACAACAACACTTAGACAAATTACATATACATCCTCCACAACCACACTTTACCAAATTACATATCCTCAATAACAACACTTCAACAAATTATATATCCTCGATAAAAACACTTCAACAAATTGCATACCCTTAACAACAACAATTCAACAAATTACATATCCTCAATAACAAGCTCAGTATTCATCAATCACAAATTTCGCAGAAAGTCAATCACAAGATCAGCAAAACACAATATCAAGTTCACCAATGATAAGTATGTGTAATGCAATGTCAAGTATAATGATGCATGTCTGACTTATTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGTGCGACACGACCCTCGATAATAATAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTCTCATTCTTTCTCAATGCACATAACACTTTTCACAATCATGTCATCAAAATAATGCAATGCCATGTTCATACAAAAATAAAGAGGATATCACTATTTTAATAACATTACACAATTCACAACAACATCAACAATGATTCAACAAGCCTTTCAAATCATTCTCCATTATCAACACATCACACACAACCCATTATTCACATTGCCTTTTATTACCCTTTTGTTTTCCTCATTAGAATTAATCAATGTGGACAAATCAACCCATCACCAAGTCCCATTACTCCCAAACATATAGCATAAGGAAATACATGCATTCCATACACTTAACAAGAGTTTAGAAATTCACTTGCCTCAATTTATCGAACAGTCACTCCGGGACTTTAGTCTTCCCCCTTTGTTGCACTTCCAAATAAAATTCAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTATACTAAACCAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTCAAGATTAGGATTAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATATATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCGCTTCTAGGTTAAAGGGAAGCACTAGACTCACTCCACGGGAACTCGCTTTTCGGTTTGCTTCAGATTTGGCATTCATTCCCCTTCCCTTTCCTGATGCAATTCAAATTGACAAGTAGTAGTGACAGCATAATAAATGTCCGGAGGACAGAACAAAATCTTTAATTCCCGGGTTTCCTTAAATTTATATCACCCATATTTGAACACCAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCCCTTCCCAATAATTGTTTCATGATCATCAACAATTGGTCATAATTACTCAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAAAATTAAAATTAGTTTCACATAGTGGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTACATAAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTCCCTTTTCTTTTCTCCCTTTCTTTTCTTTTTTTCTCTGCCTTTTTTTTCTTTTTCAAATCGTTTTTTTTTTCCTCAAATAAGCCGTCATAGGCTTTTTATAAGTTTAGGACACTTTGCCCCTTTTCTTTTTATTTTATTTTATTTATTTAATTAATTAATTTCCTTTTCTTTCTTTTTTTCATTACTATTAGCAACAAAAAAAATCTTTTATTAAATCTAAAAATCGTGTCACTCATTCTTACAAGTCATATAAATTATTTATAAAATCTACTAAAAAGGTTAATATAAAAAATAATAGTTGAAATTTCTAAAACGACTAAGAGGGTCGTTACATCTTCCTACTAATTAAGTAACAAAAGGTTGTCTCTTATAAAATTAGGACAAAGAAATGGTTGTTAACGGTGCATAAGGGGGGTATCAGAGGATGATGGATCCCTTGTTATCTGGATCTGTGTTTGTTTGTCCCTCTAGTTATTTGGTTGGTGTTGGATGCCTATGCTTAGCATCAATTTTAAGACAGGTAGAGAGTTGATTTGTCTGTTGTTTAAAAAAATCTTCTTCACTTTTGCTATCTGATTATCTCATAGCGTGGCGAAGTTTGATTGCTTTCCATACTATTTGGTCTAGTGGTAAGGTGATCCTGCTCCCATTGCAGAAAAAACATACTTGGGTTTAAGAGTGTTATCAGTTGGAAATTCTGTGTGGAGATTTTTCCATTATTAATAAAATTATTTTCCTTTTAAAAAATCACATGGATGCTGTATGTTGAAAGTATTATATTATATATCCCATGTAATGGGCATAAATTTCAGAAACTCGGAGTTTATTCCTTTCTCCGCATCTCATCGTCTTTATTTGATCAGGAGGGAAACTTGTTAATCTTTAATTATTTGTCTCTTAGTAAGAATTCATTATGTTTAAACAGTCGACTAGTCCTTGATTGAGATAATATTTGGATCTGTCTCCATAATGGTTAGACTATTTCTATGAGTGCTTGGGGGAAGCCATACCCCTTTATTAGGATTAATTGCTTCAATGCGGTCACTATTTGCTAGATTTGATGCTTTGGTTGGCCTAAATCATGCTTCTTGATCTGTAAAATTTACGGATGGAGGAAACGTCTTCAGCACTGCTGCAAAAATTGATATGTTGCTTTTATTTTTTAAATTGCTGTTATCACAGATGTTTTACAACTCTACTCTGATCAATTGTAGGGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTACATGT</genome_strand>
        <mrna_strand>CAAGCTCATTGAGTCCCAAGGGCTTGTAAAGACAAAGTTCGTGTGCAGCCTTGTTCTCATATTGGTGCCCACAAATATGCTGGTAATGCTTATAATCTTCAGCTCAGGAAAGGACGGGGATATTGTTGGCCACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGCCTCTTGAAAATGG---AAGTCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGGAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTCGGGACAAACTTTGTGCTCAAGAGTTTTTGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTGAGAG-GAATTAAATGCGATTTGTAATTCGACTATGGAGATGAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAGGGGCTGATAAATATGAAGTGCCAACTGATTGCTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356782" ref_strand="+" ref_description="SGN-E356782 [cTOS-21-D2]">
      <seq>tgctttgcttgatgagcatattggagagggaaaagtcattgaacgactttggaggggccaaatgggacaatatgagaaggtaactgataaagtggatgaacagaaggttcctgaagtaaccaatgaagaaaagaagtctcttgaaaatggaaaaagccaggagagtagtgtaactagtttcagctgttgccaaggtgctgcgggagtttcttgttgtagagatgcaagtgctgagcagaaagagaacaagaaagggcagggaacagtttcaaactggttcggcaaatgggagcagcgtgaaatactcgcagctgtaggtgtggttggagcagtggctgttgtcgctgtggcttatggcttttacaagaagtcacggtgaagcatgttaacttgggacaaactttgtgctcaagagttttcgggtatctaggttttgtagaaaggtaataatgttcgagataatctcggacactgaaaatgcatacatatttggtatatttagagaaaattaaatgcaatgtgtaattcgactatggagagcagctcctttgctcgttcccagtaagaactagaaggggtgataaatataaagtgccaactaagtgctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="60237" stop="55268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59937" g_stop="59884" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59883" i_stop="56124" i_length="3760">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56123" g_stop="55565" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="613" r_length="559" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E356782" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59937" e_stop="59884"/>
          <exon e_start="56123" e_stop="55565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAGGTTTGTATTGATTGTCCTCTCCCTTTTTTTTCTTTGCATGCTTTAGTGCTGTTTTGCTTCATGGCACAGCTAAATCACGAGGAAGTATCTTAATGTTTTCCATGGTTTTAATTCTAGGTAGATGTATATATTACTCTTCAACTATGAGATTGTGCTCAACATACTCTATAACTGCAATTGTGCTTATTCCTATGCCATTTTTGTCTATCCTTTCATTTTGAGGGAGCAACAGTTGCTTCCTTTTCCTTACAGGTTTAGGATGGGAACATGTTACTTATTTAATTTACTATCACAGTATCACTCACTCCTCTTCTGTCACGACCCAAAAATGGACGTGATGGCACTTATCTTATCCCACCAAGACAAGTCAGCCTAAAACTCAACTTATTACAATAAAATGCGGAAAATTTACTATCGACTTATATTATACCCCAAAACCTGGTTGTCACGTGTACAGGCCTCTAAAGTATTACAATTGATTCAAAAGAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGAACATAATTAAGGAGAAGAAAGTCTGCTGCAATGGAAATAGCTACCTGACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCTAGGCTCATAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACGTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCAATCGAACCTCCACAATTACAAACTACATAAAATCCAGTCTAACCTAACAGTTCATATTTACATAGCACGTAACTCTACAACAACACTTAGACAAATTACATATACATCCTCCACAACCACACTTTACCAAATTACATATCCTCAATAACAACACTTCAACAAATTATATATCCTCGATAAAAACACTTCAACAAATTGCATACCCTTAACAACAACAATTCAACAAATTACATATCCTCAATAACAAGCTCAGTATTCATCAATCACAAATTTCGCAGAAAGTCAATCACAAGATCAGCAAAACACAATATCAAGTTCACCAATGATAAGTATGTGTAATGCAATGTCAAGTATAATGATGCATGTCTGACTTATTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGTGCGACACGACCCTCGATAATAATAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTCTCATTCTTTCTCAATGCACATAACACTTTTCACAATCATGTCATCAAAATAATGCAATGCCATGTTCATACAAAAATAAAGAGGATATCACTATTTTAATAACATTACACAATTCACAACAACATCAACAATGATTCAACAAGCCTTTCAAATCATTCTCCATTATCAACACATCACACACAACCCATTATTCACATTGCCTTTTATTACCCTTTTGTTTTCCTCATTAGAATTAATCAATGTGGACAAATCAACCCATCACCAAGTCCCATTACTCCCAAACATATAGCATAAGGAAATACATGCATTCCATACACTTAACAAGAGTTTAGAAATTCACTTGCCTCAATTTATCGAACAGTCACTCCGGGACTTTAGTCTTCCCCCTTTGTTGCACTTCCAAATAAAATTCAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTATACTAAACCAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTCAAGATTAGGATTAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATATATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCGCTTCTAGGTTAAAGGGAAGCACTAGACTCACTCCACGGGAACTCGCTTTTCGGTTTGCTTCAGATTTGGCATTCATTCCCCTTCCCTTTCCTGATGCAATTCAAATTGACAAGTAGTAGTGACAGCATAATAAATGTCCGGAGGACAGAACAAAATCTTTAATTCCCGGGTTTCCTTAAATTTATATCACCCATATTTGAACACCAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCCCTTCCCAATAATTGTTTCATGATCATCAACAATTGGTCATAATTACTCAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAAAATTAAAATTAGTTTCACATAGTGGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTACATAAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTCCCTTTTCTTTTCTCCCTTTCTTTTCTTTTTTTCTCTGCCTTTTTTTTCTTTTTCAAATCGTTTTTTTTTTCCTCAAATAAGCCGTCATAGGCTTTTTATAAGTTTAGGACACTTTGCCCCTTTTCTTTTTATTTTATTTTATTTATTTAATTAATTAATTTCCTTTTCTTTCTTTTTTTCATTACTATTAGCAACAAAAAAAATCTTTTATTAAATCTAAAAATCGTGTCACTCATTCTTACAAGTCATATAAATTATTTATAAAATCTACTAAAAAGGTTAATATAAAAAATAATAGTTGAAATTTCTAAAACGACTAAGAGGGTCGTTACATCTTCCTACTAATTAAGTAACAAAAGGTTGTCTCTTATAAAATTAGGACAAAGAAATGGTTGTTAACGGTGCATAAGGGGGGTATCAGAGGATGATGGATCCCTTGTTATCTGGATCTGTGTTTGTTTGTCCCTCTAGTTATTTGGTTGGTGTTGGATGCCTATGCTTAGCATCAATTTTAAGACAGGTAGAGAGTTGATTTGTCTGTTGTTTAAAAAAATCTTCTTCACTTTTGCTATCTGATTATCTCATAGCGTGGCGAAGTTTGATTGCTTTCCATACTATTTGGTCTAGTGGTAAGGTGATCCTGCTCCCATTGCAGAAAAAACATACTTGGGTTTAAGAGTGTTATCAGTTGGAAATTCTGTGTGGAGATTTTTCCATTATTAATAAAATTATTTTCCTTTTAAAAAATCACATGGATGCTGTATGTTGAAAGTATTATATTATATATCCCATGTAATGGGCATAAATTTCAGAAACTCGGAGTTTATTCCTTTCTCCGCATCTCATCGTCTTTATTTGATCAGGAGGGAAACTTGTTAATCTTTAATTATTTGTCTCTTAGTAAGAATTCATTATGTTTAAACAGTCGACTAGTCCTTGATTGAGATAATATTTGGATCTGTCTCCATAATGGTTAGACTATTTCTATGAGTGCTTGGGGGAAGCCATACCCCTTTATTAGGATTAATTGCTTCAATGCGGTCACTATTTGCTAGATTTGATGCTTTGGTTGGCCTAAATCATGCTTCTTGATCTGTAAAATTTACGGATGGAGGAAACGTCTTCAGCACTGCTGCAAAAATTGATATGTTGCTTTTATTTTTTAAATTGCTGTTATCACAGATGTTTTACAACTCTACTCTGATCAATTGTAGGGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTACATGT</genome_strand>
        <mrna_strand>TGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624651" ref_strand="+" ref_description="SGN-E624651 [GI|707000]">
      <seq>aaaacccttcactcgcttatctgcgcgatccctagttaacgccatggccggaacaccgagaacttctccaccgacgctactgccgacgccgcaacgccaacggaggatgtcaagtttgggtttcagcgttcggagatgtatcagagtaaacttgcaggcactgcgacctcctatgatcgtcatctgttcctctgttacaagtctcacgagacttgtcctgctcgccttgaagcttctgactccgatctgcttcccaagtcattctctgctgctcttaaagctcgcaaagatgatatcaaaatcaagactcttttgacaatatgcgaagtacgtgatgacatggaagtatcagaaggagatattctgatttttcctgaaatgatcaaatacagggatttgaaggagtcagatgtggatgcatttgttgatgatgtgcttgtcaatggcaatccttggagctctggattgcaggagtcactgagtggttcttatgtgtttgtctgtgcccacaatcttcgtgatcgaagatgtggtgtttgcggacctattctaattgaggaatttagcaagctcattgagtccaagggcttgaaagacaaagttcgtgtggcagcttgttctcatattggtggccacaagtatgctggtaatgttataatcttcagctcaggaaaggacggggatattgttggccactggtatggctatgttacgccaagtgatgtacctgctttgcttgatgagcatattggagagggaaaagtcattgaacgactttggaggggccaaatgggacaatatgagaaggtaactgataaagtggatgaacagaaggttcctgaagtaaccaatgaagaaaagaagcctcttgaaaatggaagtcaggagagtagtgtaactagtttcagctgttgccaaggtgctgcgggagtttcttgttgtagagatgcaagtgctgagcaggaagagaacaagaaagggcagggaacagtttcaaactggttcggcaaatgggagcagcgtgaaatactcgcacgtgtaggtgtggttggagcagtggcagttgtcgctgtggcttatggcttttacaagaagtcacggtgaagcatgttaactcaggacaaactttgtgctcaagagttttcgggtatctaggttttgtagaaaggtaataatgttcgagataatctcggacactgaaaatgcatacatatttggtatattgagagaattaaatgcgatttgtaattcgactatggagatgagctcctttgctcgttcccagtaagaactagaggggctgataaatatgaagtgccaactgattgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="62017" stop="55269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61717" g_stop="61411" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61410" i_stop="61177" i_length="234">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61176" g_stop="61091" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="392" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61090" i_stop="60755" i_length="336">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60754" g_stop="60449" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="698" r_length="306" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60448" i_stop="59968" i_length="481">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59967" g_stop="59884" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="782" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59883" i_stop="56124" i_length="3760">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56123" g_stop="55569" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="1332" r_length="550" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E624651" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>1338</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61717" e_stop="61411"/>
          <exon e_start="61176" e_stop="61091"/>
          <exon e_start="60754" e_stop="60449"/>
          <exon e_start="59967" e_stop="59884"/>
          <exon e_start="56123" e_stop="55569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTTTCACTCGCTTTTCTGCACGAGCCCTAGTTAACGCCATGGCCGGAACACCGGAGAACTTCTCCACCGACGCTACTGCCGACGCTGCCAACGCCGAC-GAGGACGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTACCAGAGTAAACTTGCAGGTACTACGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGACATCAAAATCAAGGTTAGGTTTTCTAAAACTGATTGTTTTTGTCAATAGGGGCTAGGAGAAACTTCATTGTTGTGATTACTGCGTCTTTATGTTCTAATGTCTAGAACGACTTAAAGGTAATATGTTGTCACTGGAATAATTTTCTGCTTATGTGATTATTTCTGGAGTGAATCCAACTGATTTGACATTTTGGTTTAGTTTATTGGTCGATATTGATTGATTTTTTCCGATGAGTGTTTGCTGTAGACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAGGTAGTTTATTTGTTCATTCATTTTTTCTAAAATTCGGCATTGAGCGGCACAAAGCTGATATTCCATGCATTGTGGGGGCTGACAAAATGACTCAATTTTAAACAAGAAAATGACAAATAAGATTCATGAATTTGACTTGATTCTATTAGCTGGATCCAAGTTTTCTGATATTTAGAAGAAAACGGTTTGTAGATACCACACTGAAGTCGCCTTTTAGTTTTCGTGCTTTCTCTTGGATAGCTTCAAAATGTCGATCTAAACGTGTATGCATTGTCGGATTCGTCCGGATCTGTTGAGTCTCGTGGTTTGCATTGAAGCCTTGTTTTTATGATGAAGGGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTGATCGAAGATGTGGTGTTTGTGGACCTATTCTAATTGAGGAATTTAGCAAGCTCATTGAGTCCAAGAGCTTGAAAGACAAAGTTCGTGTGACAGCTTGTTCTCATATTGGTGGCCACAAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGGAATATTGTTGGCCACTGGTAAGTCATATTTTTCAACGGACGACCTGGAATTTCACCACTAGCCTCCAGATCAATTTGTAATCTAACAACGGTAGCATGATTGAAAATGTTATTTTCATGAAGATAAAGTTATTTTTAAAATCTCTTACCTTGCAAACTATTATATACTGATAAAGGAGATGGAAGGTGGGAGATGGGTCATGTGGGGTCGGTGGGTGATATTTTCAAGTGCCAAATATTGACTCCATTAGTTACATATTGGTTGAAGCAAGTGCAATAAAGTAAGAGTTGTGGTACATTAGAGGAATGGTCATTTTCTCCATTCAGTGCAAAACATTTTCGTTGTGAGAAGATGTTGAACAATTAAGCCTACCTAGAAAATGATTTTGCAAAGAAAAACACACATTGCAAGCAGCATATCAAAGATCAATAAAGAAACTTTGCCTTAAGACTGTCCATTACATACATGTTATATGTGCTCTATGTTGTGTTAGTGCAGGTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAGGTTTGTATTGATTGTCCTCTCCCTTTTTTTTCTTTGCATGCTTTAGTGCTGTTTTGCTTCATGGCACAGCTAAATCACGAGGAAGTATCTTAATGTTTTCCATGGTTTTAATTCTAGGTAGATGTATATATTACTCTTCAACTATGAGATTGTGCTCAACATACTCTATAACTGCAATTGTGCTTATTCCTATGCCATTTTTGTCTATCCTTTCATTTTGAGGGAGCAACAGTTGCTTCCTTTTCCTTACAGGTTTAGGATGGGAACATGTTACTTATTTAATTTACTATCACAGTATCACTCACTCCTCTTCTGTCACGACCCAAAAATGGACGTGATGGCACTTATCTTATCCCACCAAGACAAGTCAGCCTAAAACTCAACTTATTACAATAAAATGCGGAAAATTTACTATCGACTTATATTATACCCCAAAACCTGGTTGTCACGTGTACAGGCCTCTAAAGTATTACAATTGATTCAAAAGAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGAACATAATTAAGGAGAAGAAAGTCTGCTGCAATGGAAATAGCTACCTGACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCTAGGCTCATAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACGTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCAATCGAACCTCCACAATTACAAACTACATAAAATCCAGTCTAACCTAACAGTTCATATTTACATAGCACGTAACTCTACAACAACACTTAGACAAATTACATATACATCCTCCACAACCACACTTTACCAAATTACATATCCTCAATAACAACACTTCAACAAATTATATATCCTCGATAAAAACACTTCAACAAATTGCATACCCTTAACAACAACAATTCAACAAATTACATATCCTCAATAACAAGCTCAGTATTCATCAATCACAAATTTCGCAGAAAGTCAATCACAAGATCAGCAAAACACAATATCAAGTTCACCAATGATAAGTATGTGTAATGCAATGTCAAGTATAATGATGCATGTCTGACTTATTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGTGCGACACGACCCTCGATAATAATAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTCTCATTCTTTCTCAATGCACATAACACTTTTCACAATCATGTCATCAAAATAATGCAATGCCATGTTCATACAAAAATAAAGAGGATATCACTATTTTAATAACATTACACAATTCACAACAACATCAACAATGATTCAACAAGCCTTTCAAATCATTCTCCATTATCAACACATCACACACAACCCATTATTCACATTGCCTTTTATTACCCTTTTGTTTTCCTCATTAGAATTAATCAATGTGGACAAATCAACCCATCACCAAGTCCCATTACTCCCAAACATATAGCATAAGGAAATACATGCATTCCATACACTTAACAAGAGTTTAGAAATTCACTTGCCTCAATTTATCGAACAGTCACTCCGGGACTTTAGTCTTCCCCCTTTGTTGCACTTCCAAATAAAATTCAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTATACTAAACCAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTCAAGATTAGGATTAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATATATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCGCTTCTAGGTTAAAGGGAAGCACTAGACTCACTCCACGGGAACTCGCTTTTCGGTTTGCTTCAGATTTGGCATTCATTCCCCTTCCCTTTCCTGATGCAATTCAAATTGACAAGTAGTAGTGACAGCATAATAAATGTCCGGAGGACAGAACAAAATCTTTAATTCCCGGGTTTCCTTAAATTTATATCACCCATATTTGAACACCAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCCCTTCCCAATAATTGTTTCATGATCATCAACAATTGGTCATAATTACTCAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAAAATTAAAATTAGTTTCACATAGTGGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTACATAAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTCCCTTTTCTTTTCTCCCTTTCTTTTCTTTTTTTCTCTGCCTTTTTTTTCTTTTTCAAATCGTTTTTTTTTTCCTCAAATAAGCCGTCATAGGCTTTTTATAAGTTTAGGACACTTTGCCCCTTTTCTTTTTATTTTATTTTATTTATTTAATTAATTAATTTCCTTTTCTTTCTTTTTTTCATTACTATTAGCAACAAAAAAAATCTTTTATTAAATCTAAAAATCGTGTCACTCATTCTTACAAGTCATATAAATTATTTATAAAATCTACTAAAAAGGTTAATATAAAAAATAATAGTTGAAATTTCTAAAACGACTAAGAGGGTCGTTACATCTTCCTACTAATTAAGTAACAAAAGGTTGTCTCTTATAAAATTAGGACAAAGAAATGGTTGTTAACGGTGCATAAGGGGGGTATCAGAGGATGATGGATCCCTTGTTATCTGGATCTGTGTTTGTTTGTCCCTCTAGTTATTTGGTTGGTGTTGGATGCCTATGCTTAGCATCAATTTTAAGACAGGTAGAGAGTTGATTTGTCTGTTGTTTAAAAAAATCTTCTTCACTTTTGCTATCTGATTATCTCATAGCGTGGCGAAGTTTGATTGCTTTCCATACTATTTGGTCTAGTGGTAAGGTGATCCTGCTCCCATTGCAGAAAAAACATACTTGGGTTTAAGAGTGTTATCAGTTGGAAATTCTGTGTGGAGATTTTTCCATTATTAATAAAATTATTTTCCTTTTAAAAAATCACATGGATGCTGTATGTTGAAAGTATTATATTATATATCCCATGTAATGGGCATAAATTTCAGAAACTCGGAGTTTATTCCTTTCTCCGCATCTCATCGTCTTTATTTGATCAGGAGGGAAACTTGTTAATCTTTAATTATTTGTCTCTTAGTAAGAATTCATTATGTTTAAACAGTCGACTAGTCCTTGATTGAGATAATATTTGGATCTGTCTCCATAATGGTTAGACTATTTCTATGAGTGCTTGGGGGAAGCCATACCCCTTTATTAGGATTAATTGCTTCAATGCGGTCACTATTTGCTAGATTTGATGCTTTGGTTGGCCTAAATCATGCTTCTTGATCTGTAAAATTTACGGATGGAGGAAACGTCTTCAGCACTGCTGCAAAAATTGATATGTTGCTTTTATTTTTTAAATTGCTGTTATCACAGATGTTTTACAACTCTACTCTGATCAATTGTAGGGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTAC</genome_strand>
        <mrna_strand>AAAACCCTTCACTCGCTTATCTGCGCGATCCCTAGTTAACGCCATGGCCGGAACACC-GAGAACTTCTCCACCGACGCTACTGCCGACGCCG-CAACGCCAACGGAGGATGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTATCAGAGTAAACTTGCAGGCACTGCGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGTCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCCAAGTCATTCTCTGCTGCTCTTAAAGCTCGCAAAGATGATATCAAAATCAAG..........................................................................................................................................................................................................................................ACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAG................................................................................................................................................................................................................................................................................................................................................GGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATCCTTGGAGCTCTGGATTGCAGGAGTCACTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTGATCGAAGATGTGGTGTTTGCGGACCTATTCTAATTGAGGAATTTAGCAAGCTCATTGAGTCCAAGGGCTTGAAAGACAAAGTTCGTGTGGCAGCTTGTTCTCATATTGGTGGCCACAAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGGGATATTGTTGGCCACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGCCTCTTGAAAATGG---AAGTCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGGAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCACGTGTAGGTGTGGTTGGAGCAGTGGCAGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTCAGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATA-TT-GAGAGAATTAAATGCGATTTGTAATTCGACTATGGAGATGAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAGGGGCTGATAAATATGAAGTGCCAACTGATTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353148" ref_strand="+" ref_description="SGN-E353148 [cTOS-14-I7]">
      <seq>tgctttgcttgatgagcatattggagagggaaaagtcattgaacgactttggaggggccaaatgggacaatatgagaaggtaactgataaagtggatgaacagaaggttcctgaagtaaccaatgaagaaaagaagtctcttgaaaatggaaaaagccaggagagtagtgtaactagtttcagctgttgccaaggtgctgcgggagtttcttgttgtagagatgcaagtgctgagcagaaagagaacaagaaagggcagggaacagtttcaaactggttcggcaaatgggagcagcgtgaaatactcgcagctgtaggtgtggttggagcagtggctgttgtcgctgtggcttatggcttttacaagaagtcacggtgaagcatgttaacttgggacaaactttgtgctcaagagttttcgggtatctaggttttgtagaaaggtaaataatgttcgagataatctcggacactgaaaaatgcatacatatttggtatatttagaagaaattaaatgcaatgtgtaattcgactatggagagcagctcctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="60237" stop="55326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59937" g_stop="59884" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59883" i_stop="56124" i_length="3760">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56123" g_stop="55626" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="554" r_length="500" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E353148" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59937" e_stop="59884"/>
          <exon e_start="56123" e_stop="55626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAGGTTTGTATTGATTGTCCTCTCCCTTTTTTTTCTTTGCATGCTTTAGTGCTGTTTTGCTTCATGGCACAGCTAAATCACGAGGAAGTATCTTAATGTTTTCCATGGTTTTAATTCTAGGTAGATGTATATATTACTCTTCAACTATGAGATTGTGCTCAACATACTCTATAACTGCAATTGTGCTTATTCCTATGCCATTTTTGTCTATCCTTTCATTTTGAGGGAGCAACAGTTGCTTCCTTTTCCTTACAGGTTTAGGATGGGAACATGTTACTTATTTAATTTACTATCACAGTATCACTCACTCCTCTTCTGTCACGACCCAAAAATGGACGTGATGGCACTTATCTTATCCCACCAAGACAAGTCAGCCTAAAACTCAACTTATTACAATAAAATGCGGAAAATTTACTATCGACTTATATTATACCCCAAAACCTGGTTGTCACGTGTACAGGCCTCTAAAGTATTACAATTGATTCAAAAGAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGAACATAATTAAGGAGAAGAAAGTCTGCTGCAATGGAAATAGCTACCTGACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCTAGGCTCATAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACGTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCAATCGAACCTCCACAATTACAAACTACATAAAATCCAGTCTAACCTAACAGTTCATATTTACATAGCACGTAACTCTACAACAACACTTAGACAAATTACATATACATCCTCCACAACCACACTTTACCAAATTACATATCCTCAATAACAACACTTCAACAAATTATATATCCTCGATAAAAACACTTCAACAAATTGCATACCCTTAACAACAACAATTCAACAAATTACATATCCTCAATAACAAGCTCAGTATTCATCAATCACAAATTTCGCAGAAAGTCAATCACAAGATCAGCAAAACACAATATCAAGTTCACCAATGATAAGTATGTGTAATGCAATGTCAAGTATAATGATGCATGTCTGACTTATTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGTGCGACACGACCCTCGATAATAATAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTCTCATTCTTTCTCAATGCACATAACACTTTTCACAATCATGTCATCAAAATAATGCAATGCCATGTTCATACAAAAATAAAGAGGATATCACTATTTTAATAACATTACACAATTCACAACAACATCAACAATGATTCAACAAGCCTTTCAAATCATTCTCCATTATCAACACATCACACACAACCCATTATTCACATTGCCTTTTATTACCCTTTTGTTTTCCTCATTAGAATTAATCAATGTGGACAAATCAACCCATCACCAAGTCCCATTACTCCCAAACATATAGCATAAGGAAATACATGCATTCCATACACTTAACAAGAGTTTAGAAATTCACTTGCCTCAATTTATCGAACAGTCACTCCGGGACTTTAGTCTTCCCCCTTTGTTGCACTTCCAAATAAAATTCAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTATACTAAACCAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTCAAGATTAGGATTAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATATATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCGCTTCTAGGTTAAAGGGAAGCACTAGACTCACTCCACGGGAACTCGCTTTTCGGTTTGCTTCAGATTTGGCATTCATTCCCCTTCCCTTTCCTGATGCAATTCAAATTGACAAGTAGTAGTGACAGCATAATAAATGTCCGGAGGACAGAACAAAATCTTTAATTCCCGGGTTTCCTTAAATTTATATCACCCATATTTGAACACCAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCCCTTCCCAATAATTGTTTCATGATCATCAACAATTGGTCATAATTACTCAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAAAATTAAAATTAGTTTCACATAGTGGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTACATAAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTCCCTTTTCTTTTCTCCCTTTCTTTTCTTTTTTTCTCTGCCTTTTTTTTCTTTTTCAAATCGTTTTTTTTTTCCTCAAATAAGCCGTCATAGGCTTTTTATAAGTTTAGGACACTTTGCCCCTTTTCTTTTTATTTTATTTTATTTATTTAATTAATTAATTTCCTTTTCTTTCTTTTTTTCATTACTATTAGCAACAAAAAAAATCTTTTATTAAATCTAAAAATCGTGTCACTCATTCTTACAAGTCATATAAATTATTTATAAAATCTACTAAAAAGGTTAATATAAAAAATAATAGTTGAAATTTCTAAAACGACTAAGAGGGTCGTTACATCTTCCTACTAATTAAGTAACAAAAGGTTGTCTCTTATAAAATTAGGACAAAGAAATGGTTGTTAACGGTGCATAAGGGGGGTATCAGAGGATGATGGATCCCTTGTTATCTGGATCTGTGTTTGTTTGTCCCTCTAGTTATTTGGTTGGTGTTGGATGCCTATGCTTAGCATCAATTTTAAGACAGGTAGAGAGTTGATTTGTCTGTTGTTTAAAAAAATCTTCTTCACTTTTGCTATCTGATTATCTCATAGCGTGGCGAAGTTTGATTGCTTTCCATACTATTTGGTCTAGTGGTAAGGTGATCCTGCTCCCATTGCAGAAAAAACATACTTGGGTTTAAGAGTGTTATCAGTTGGAAATTCTGTGTGGAGATTTTTCCATTATTAATAAAATTATTTTCCTTTTAAAAAATCACATGGATGCTGTATGTTGAAAGTATTATATTATATATCCCATGTAATGGGCATAAATTTCAGAAACTCGGAGTTTATTCCTTTCTCCGCATCTCATCGTCTTTATTTGATCAGGAGGGAAACTTGTTAATCTTTAATTATTTGTCTCTTAGTAAGAATTCATTATGTTTAAACAGTCGACTAGTCCTTGATTGAGATAATATTTGGATCTGTCTCCATAATGGTTAGACTATTTCTATGAGTGCTTGGGGGAAGCCATACCCCTTTATTAGGATTAATTGCTTCAATGCGGTCACTATTTGCTAGATTTGATGCTTTGGTTGGCCTAAATCATGCTTCTTGATCTGTAAAATTTACGGATGGAGGAAACGTCTTCAGCACTGCTGCAAAAATTGATATGTTGCTTTTATTTTTTAAATTGCTGTTATCACAGATGTTTTACAACTCTACTCTGATCAATTGTAGGGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGT-AATAATGTTCGAGATAATCTCGGACACTG-AAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGC</genome_strand>
        <mrna_strand>TGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAAATAATGTTCGAGATAATCTCGGACACTGAAAAATGCATACATATTTGGTATATTTAGAAGAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703048" ref_strand="+" ref_description="SGN-E703048 [FA20BF08]">
      <seq>cttctgactccgatctgcttccaaagtcactctctgctgctcttaaagctcgcaaggatgacatcaaaatcaagactcttttgacaatatgcgaagtacgtgatgacatggaagtatcagaaggagatattctgatttttcctgaaatgatcaaatacagggatttgaaggagtcagatgtggatgcatttgttgatgatgtgcttgtcaatggcaatacttggagctctggattgcaggagtcgctgagtggttcttatgtgtttgtctgtgcccacaatcttcgtgatcgaagatgtggtgtttgtggacctattctaattgaggaatttagcaagctcattgagtccaagagcttgaaagacaaagttcgtgtgacagcttgttctcatattggtggccacaagtatgctggtaatgttataatcttcagctcaggaaaggacgggaatattgttggccactggtatggctatgttacgccaagtgatgtacctgctttgcttgatgagcatattggagagggaaaagtcattgaacgactttggaggggccaaatgggacaatatgagaaggtaactgataaagtggatgaacagaaggttcctgaagtaaccaatgaagaaaagaagtctcttgaaaatggaaaaagccaggagagtagtgtaactagtttcagctgttgccaaggtgctgcgggagtttcttgttgtagagatgcaagtgctgagcagaaagagaacaagaaagggcagggaacagtttcaaactggttcggcaaatgggagcagcgtgaaatactcgcagctgtaggtgtggttggagcagtggctgttgtcgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="61784" stop="55530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61484" g_stop="61411" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61410" i_stop="61177" i_length="234">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61176" g_stop="61091" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="160" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61090" i_stop="60755" i_length="336">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60754" g_stop="60449" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="466" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60448" i_stop="59968" i_length="481">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59967" g_stop="59884" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="550" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59883" i_stop="56124" i_length="3760">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56123" g_stop="55830" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="844" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E703048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61484" e_stop="61411"/>
          <exon e_start="61176" e_stop="61091"/>
          <exon e_start="60754" e_stop="60449"/>
          <exon e_start="59967" e_stop="59884"/>
          <exon e_start="56123" e_stop="55830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTGACTCCGATCTGCTTCCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGACATCAAAATCAAGGTTAGGTTTTCTAAAACTGATTGTTTTTGTCAATAGGGGCTAGGAGAAACTTCATTGTTGTGATTACTGCGTCTTTATGTTCTAATGTCTAGAACGACTTAAAGGTAATATGTTGTCACTGGAATAATTTTCTGCTTATGTGATTATTTCTGGAGTGAATCCAACTGATTTGACATTTTGGTTTAGTTTATTGGTCGATATTGATTGATTTTTTCCGATGAGTGTTTGCTGTAGACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAGGTAGTTTATTTGTTCATTCATTTTTTCTAAAATTCGGCATTGAGCGGCACAAAGCTGATATTCCATGCATTGTGGGGGCTGACAAAATGACTCAATTTTAAACAAGAAAATGACAAATAAGATTCATGAATTTGACTTGATTCTATTAGCTGGATCCAAGTTTTCTGATATTTAGAAGAAAACGGTTTGTAGATACCACACTGAAGTCGCCTTTTAGTTTTCGTGCTTTCTCTTGGATAGCTTCAAAATGTCGATCTAAACGTGTATGCATTGTCGGATTCGTCCGGATCTGTTGAGTCTCGTGGTTTGCATTGAAGCCTTGTTTTTATGATGAAGGGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTGATCGAAGATGTGGTGTTTGTGGACCTATTCTAATTGAGGAATTTAGCAAGCTCATTGAGTCCAAGAGCTTGAAAGACAAAGTTCGTGTGACAGCTTGTTCTCATATTGGTGGCCACAAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGGAATATTGTTGGCCACTGGTAAGTCATATTTTTCAACGGACGACCTGGAATTTCACCACTAGCCTCCAGATCAATTTGTAATCTAACAACGGTAGCATGATTGAAAATGTTATTTTCATGAAGATAAAGTTATTTTTAAAATCTCTTACCTTGCAAACTATTATATACTGATAAAGGAGATGGAAGGTGGGAGATGGGTCATGTGGGGTCGGTGGGTGATATTTTCAAGTGCCAAATATTGACTCCATTAGTTACATATTGGTTGAAGCAAGTGCAATAAAGTAAGAGTTGTGGTACATTAGAGGAATGGTCATTTTCTCCATTCAGTGCAAAACATTTTCGTTGTGAGAAGATGTTGAACAATTAAGCCTACCTAGAAAATGATTTTGCAAAGAAAAACACACATTGCAAGCAGCATATCAAAGATCAATAAAGAAACTTTGCCTTAAGACTGTCCATTACATACATGTTATATGTGCTCTATGTTGTGTTAGTGCAGGTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAGGTTTGTATTGATTGTCCTCTCCCTTTTTTTTCTTTGCATGCTTTAGTGCTGTTTTGCTTCATGGCACAGCTAAATCACGAGGAAGTATCTTAATGTTTTCCATGGTTTTAATTCTAGGTAGATGTATATATTACTCTTCAACTATGAGATTGTGCTCAACATACTCTATAACTGCAATTGTGCTTATTCCTATGCCATTTTTGTCTATCCTTTCATTTTGAGGGAGCAACAGTTGCTTCCTTTTCCTTACAGGTTTAGGATGGGAACATGTTACTTATTTAATTTACTATCACAGTATCACTCACTCCTCTTCTGTCACGACCCAAAAATGGACGTGATGGCACTTATCTTATCCCACCAAGACAAGTCAGCCTAAAACTCAACTTATTACAATAAAATGCGGAAAATTTACTATCGACTTATATTATACCCCAAAACCTGGTTGTCACGTGTACAGGCCTCTAAAGTATTACAATTGATTCAAAAGAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGAACATAATTAAGGAGAAGAAAGTCTGCTGCAATGGAAATAGCTACCTGACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCTAGGCTCATAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACGTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCAATCGAACCTCCACAATTACAAACTACATAAAATCCAGTCTAACCTAACAGTTCATATTTACATAGCACGTAACTCTACAACAACACTTAGACAAATTACATATACATCCTCCACAACCACACTTTACCAAATTACATATCCTCAATAACAACACTTCAACAAATTATATATCCTCGATAAAAACACTTCAACAAATTGCATACCCTTAACAACAACAATTCAACAAATTACATATCCTCAATAACAAGCTCAGTATTCATCAATCACAAATTTCGCAGAAAGTCAATCACAAGATCAGCAAAACACAATATCAAGTTCACCAATGATAAGTATGTGTAATGCAATGTCAAGTATAATGATGCATGTCTGACTTATTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGTGCGACACGACCCTCGATAATAATAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTCTCATTCTTTCTCAATGCACATAACACTTTTCACAATCATGTCATCAAAATAATGCAATGCCATGTTCATACAAAAATAAAGAGGATATCACTATTTTAATAACATTACACAATTCACAACAACATCAACAATGATTCAACAAGCCTTTCAAATCATTCTCCATTATCAACACATCACACACAACCCATTATTCACATTGCCTTTTATTACCCTTTTGTTTTCCTCATTAGAATTAATCAATGTGGACAAATCAACCCATCACCAAGTCCCATTACTCCCAAACATATAGCATAAGGAAATACATGCATTCCATACACTTAACAAGAGTTTAGAAATTCACTTGCCTCAATTTATCGAACAGTCACTCCGGGACTTTAGTCTTCCCCCTTTGTTGCACTTCCAAATAAAATTCAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTATACTAAACCAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTCAAGATTAGGATTAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATATATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCGCTTCTAGGTTAAAGGGAAGCACTAGACTCACTCCACGGGAACTCGCTTTTCGGTTTGCTTCAGATTTGGCATTCATTCCCCTTCCCTTTCCTGATGCAATTCAAATTGACAAGTAGTAGTGACAGCATAATAAATGTCCGGAGGACAGAACAAAATCTTTAATTCCCGGGTTTCCTTAAATTTATATCACCCATATTTGAACACCAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCCCTTCCCAATAATTGTTTCATGATCATCAACAATTGGTCATAATTACTCAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAAAATTAAAATTAGTTTCACATAGTGGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTACATAAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTCCCTTTTCTTTTCTCCCTTTCTTTTCTTTTTTTCTCTGCCTTTTTTTTCTTTTTCAAATCGTTTTTTTTTTCCTCAAATAAGCCGTCATAGGCTTTTTATAAGTTTAGGACACTTTGCCCCTTTTCTTTTTATTTTATTTTATTTATTTAATTAATTAATTTCCTTTTCTTTCTTTTTTTCATTACTATTAGCAACAAAAAAAATCTTTTATTAAATCTAAAAATCGTGTCACTCATTCTTACAAGTCATATAAATTATTTATAAAATCTACTAAAAAGGTTAATATAAAAAATAATAGTTGAAATTTCTAAAACGACTAAGAGGGTCGTTACATCTTCCTACTAATTAAGTAACAAAAGGTTGTCTCTTATAAAATTAGGACAAAGAAATGGTTGTTAACGGTGCATAAGGGGGGTATCAGAGGATGATGGATCCCTTGTTATCTGGATCTGTGTTTGTTTGTCCCTCTAGTTATTTGGTTGGTGTTGGATGCCTATGCTTAGCATCAATTTTAAGACAGGTAGAGAGTTGATTTGTCTGTTGTTTAAAAAAATCTTCTTCACTTTTGCTATCTGATTATCTCATAGCGTGGCGAAGTTTGATTGCTTTCCATACTATTTGGTCTAGTGGTAAGGTGATCCTGCTCCCATTGCAGAAAAAACATACTTGGGTTTAAGAGTGTTATCAGTTGGAAATTCTGTGTGGAGATTTTTCCATTATTAATAAAATTATTTTCCTTTTAAAAAATCACATGGATGCTGTATGTTGAAAGTATTATATTATATATCCCATGTAATGGGCATAAATTTCAGAAACTCGGAGTTTATTCCTTTCTCCGCATCTCATCGTCTTTATTTGATCAGGAGGGAAACTTGTTAATCTTTAATTATTTGTCTCTTAGTAAGAATTCATTATGTTTAAACAGTCGACTAGTCCTTGATTGAGATAATATTTGGATCTGTCTCCATAATGGTTAGACTATTTCTATGAGTGCTTGGGGGAAGCCATACCCCTTTATTAGGATTAATTGCTTCAATGCGGTCACTATTTGCTAGATTTGATGCTTTGGTTGGCCTAAATCATGCTTCTTGATCTGTAAAATTTACGGATGGAGGAAACGTCTTCAGCACTGCTGCAAAAATTGATATGTTGCTTTTATTTTTTAAATTGCTGTTATCACAGATGTTTTACAACTCTACTCTGATCAATTGTAGGGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGT</genome_strand>
        <mrna_strand>CTTCTGACTCCGATCTGCTTCCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGACATCAAAATCAAG..........................................................................................................................................................................................................................................ACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAG................................................................................................................................................................................................................................................................................................................................................GGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTGATCGAAGATGTGGTGTTTGTGGACCTATTCTAATTGAGGAATTTAGCAAGCTCATTGAGTCCAAGAGCTTGAAAGACAAAGTTCGTGTGACAGCTTGTTCTCATATTGGTGGCCACAAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGGAATATTGTTGGCCACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706427" ref_strand="+" ref_description="SGN-E706427 [FA29DG02]">
      <seq>ggatgacatcaaaatcaagactcttttgacaatatgcgaagtacgtgatgacatggaagtatcagaaggagatattctgatttttcctgaaatgatcaaatacagggatttgaaggagtcagatgtggatgcatttgttgatgatgtgcttgtcaatggcaatacttggagctctggattgcaggagtcgctgagtggttcttatgtgtttgtctgtgcccacaatcttcgtgatcgaagatgtggtgtttgtggacctattctaattgaggaatttagcaagctcattgagtccaagagcttgaaagacaaagttcgtgtgacagcttgttctcatattggtggccacaagtatgctggtaatgttataatcttcagctcaggaaaggacgggaatattgttggccactggtatggctatgttacgccaagtgatgtacctgctttgcttgatgagcatattggagagggaaaagtcattgaacgactttggaggggccaaatgggacaatatgagaaggtaactgataaagtggatgaacagaaggttcctgaagtaaccaatgaagaaaagaagtctcttgaaaatggaaaaagccaggagagtagtgtaactagtttcagctgttgccaaggtgctgcgggagtttcttgttgtagagatgcaagtgctggacagaaagagaacaagaaagggcagggaacagtttcaaactggttcggcaaatgggagcagcgtgaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="61478" stop="55572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61429" g_stop="61411" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61410" i_stop="61177" i_length="234">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61176" g_stop="61091" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="105" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61090" i_stop="60755" i_length="336">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60754" g_stop="60449" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="411" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60448" i_stop="59968" i_length="481">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59967" g_stop="59884" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="495" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59883" i_stop="56124" i_length="3760">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56123" g_stop="55872" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="747" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E706427" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61429" e_stop="61411"/>
          <exon e_start="61176" e_stop="61091"/>
          <exon e_start="60754" e_stop="60449"/>
          <exon e_start="59967" e_stop="59884"/>
          <exon e_start="56123" e_stop="55872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGACATCAAAATCAAGGTTAGGTTTTCTAAAACTGATTGTTTTTGTCAATAGGGGCTAGGAGAAACTTCATTGTTGTGATTACTGCGTCTTTATGTTCTAATGTCTAGAACGACTTAAAGGTAATATGTTGTCACTGGAATAATTTTCTGCTTATGTGATTATTTCTGGAGTGAATCCAACTGATTTGACATTTTGGTTTAGTTTATTGGTCGATATTGATTGATTTTTTCCGATGAGTGTTTGCTGTAGACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAGGTAGTTTATTTGTTCATTCATTTTTTCTAAAATTCGGCATTGAGCGGCACAAAGCTGATATTCCATGCATTGTGGGGGCTGACAAAATGACTCAATTTTAAACAAGAAAATGACAAATAAGATTCATGAATTTGACTTGATTCTATTAGCTGGATCCAAGTTTTCTGATATTTAGAAGAAAACGGTTTGTAGATACCACACTGAAGTCGCCTTTTAGTTTTCGTGCTTTCTCTTGGATAGCTTCAAAATGTCGATCTAAACGTGTATGCATTGTCGGATTCGTCCGGATCTGTTGAGTCTCGTGGTTTGCATTGAAGCCTTGTTTTTATGATGAAGGGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTGATCGAAGATGTGGTGTTTGTGGACCTATTCTAATTGAGGAATTTAGCAAGCTCATTGAGTCCAAGAGCTTGAAAGACAAAGTTCGTGTGACAGCTTGTTCTCATATTGGTGGCCACAAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGGAATATTGTTGGCCACTGGTAAGTCATATTTTTCAACGGACGACCTGGAATTTCACCACTAGCCTCCAGATCAATTTGTAATCTAACAACGGTAGCATGATTGAAAATGTTATTTTCATGAAGATAAAGTTATTTTTAAAATCTCTTACCTTGCAAACTATTATATACTGATAAAGGAGATGGAAGGTGGGAGATGGGTCATGTGGGGTCGGTGGGTGATATTTTCAAGTGCCAAATATTGACTCCATTAGTTACATATTGGTTGAAGCAAGTGCAATAAAGTAAGAGTTGTGGTACATTAGAGGAATGGTCATTTTCTCCATTCAGTGCAAAACATTTTCGTTGTGAGAAGATGTTGAACAATTAAGCCTACCTAGAAAATGATTTTGCAAAGAAAAACACACATTGCAAGCAGCATATCAAAGATCAATAAAGAAACTTTGCCTTAAGACTGTCCATTACATACATGTTATATGTGCTCTATGTTGTGTTAGTGCAGGTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAGGTTTGTATTGATTGTCCTCTCCCTTTTTTTTCTTTGCATGCTTTAGTGCTGTTTTGCTTCATGGCACAGCTAAATCACGAGGAAGTATCTTAATGTTTTCCATGGTTTTAATTCTAGGTAGATGTATATATTACTCTTCAACTATGAGATTGTGCTCAACATACTCTATAACTGCAATTGTGCTTATTCCTATGCCATTTTTGTCTATCCTTTCATTTTGAGGGAGCAACAGTTGCTTCCTTTTCCTTACAGGTTTAGGATGGGAACATGTTACTTATTTAATTTACTATCACAGTATCACTCACTCCTCTTCTGTCACGACCCAAAAATGGACGTGATGGCACTTATCTTATCCCACCAAGACAAGTCAGCCTAAAACTCAACTTATTACAATAAAATGCGGAAAATTTACTATCGACTTATATTATACCCCAAAACCTGGTTGTCACGTGTACAGGCCTCTAAAGTATTACAATTGATTCAAAAGAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGAACATAATTAAGGAGAAGAAAGTCTGCTGCAATGGAAATAGCTACCTGACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCTAGGCTCATAACCTACAAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACGTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCAATCGAACCTCCACAATTACAAACTACATAAAATCCAGTCTAACCTAACAGTTCATATTTACATAGCACGTAACTCTACAACAACACTTAGACAAATTACATATACATCCTCCACAACCACACTTTACCAAATTACATATCCTCAATAACAACACTTCAACAAATTATATATCCTCGATAAAAACACTTCAACAAATTGCATACCCTTAACAACAACAATTCAACAAATTACATATCCTCAATAACAAGCTCAGTATTCATCAATCACAAATTTCGCAGAAAGTCAATCACAAGATCAGCAAAACACAATATCAAGTTCACCAATGATAAGTATGTGTAATGCAATGTCAAGTATAATGATGCATGTCTGACTTATTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGTGCGACACGACCCTCGATAATAATAACCATCACGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTTAAGTTCTCATTCTTTCTCAATGCACATAACACTTTTCACAATCATGTCATCAAAATAATGCAATGCCATGTTCATACAAAAATAAAGAGGATATCACTATTTTAATAACATTACACAATTCACAACAACATCAACAATGATTCAACAAGCCTTTCAAATCATTCTCCATTATCAACACATCACACACAACCCATTATTCACATTGCCTTTTATTACCCTTTTGTTTTCCTCATTAGAATTAATCAATGTGGACAAATCAACCCATCACCAAGTCCCATTACTCCCAAACATATAGCATAAGGAAATACATGCATTCCATACACTTAACAAGAGTTTAGAAATTCACTTGCCTCAATTTATCGAACAGTCACTCCGGGACTTTAGTCTTCCCCCTTTGTTGCACTTCCAAATAAAATTCAGTCTATTCAAATAATTAAACACTATAAGGTTTCGAAGTTAACAACACACATATTGCACGTGTCTATACTAAACCAAAAAAACTCACGCAAATTTATAATTAAGTTCTTAAGTTTCAAGATTAGGATTAAATTTTTAATTTCTTTTCAATATCATAAATCTTAAGACATTCACTTAATACCATATACCTAATACTTAATTATATATATTAATATATCAAAACTTAAATGATAATATGGAAACTATTAAAAGGATCTCAAATTGATCCGCTTCTAGGTTAAAGGGAAGCACTAGACTCACTCCACGGGAACTCGCTTTTCGGTTTGCTTCAGATTTGGCATTCATTCCCCTTCCCTTTCCTGATGCAATTCAAATTGACAAGTAGTAGTGACAGCATAATAAATGTCCGGAGGACAGAACAAAATCTTTAATTCCCGGGTTTCCTTAAATTTATATCACCCATATTTGAACACCAAAATAAAGATATTTCATGAAATACTTTTATACGGAAGGCTTCTTGCATGTCTATTTACCTCCCTTCCCAATAATTGTTTCATGATCATCAACAATTGGTCATAATTACTCAATGACTAAGGTGAAATTTATGCTAAATAACATATGCATACATGTACACAAAATTAAAATTAGTTTCACATAGTGGTGTAAATTATACACGTTTTAATCTAAAAATCTACTTCTAATTACATAAAAACTTAATAGAAAGGATGAAAATAATTACCTTGACGCCTTGAGATGAAAATATTGATTTTTCTCCTCCTTTTCCCTTTTCTTTTCTCCCTTTCTTTTCTTTTTTTCTCTGCCTTTTTTTTCTTTTTCAAATCGTTTTTTTTTTCCTCAAATAAGCCGTCATAGGCTTTTTATAAGTTTAGGACACTTTGCCCCTTTTCTTTTTATTTTATTTTATTTATTTAATTAATTAATTTCCTTTTCTTTCTTTTTTTCATTACTATTAGCAACAAAAAAAATCTTTTATTAAATCTAAAAATCGTGTCACTCATTCTTACAAGTCATATAAATTATTTATAAAATCTACTAAAAAGGTTAATATAAAAAATAATAGTTGAAATTTCTAAAACGACTAAGAGGGTCGTTACATCTTCCTACTAATTAAGTAACAAAAGGTTGTCTCTTATAAAATTAGGACAAAGAAATGGTTGTTAACGGTGCATAAGGGGGGTATCAGAGGATGATGGATCCCTTGTTATCTGGATCTGTGTTTGTTTGTCCCTCTAGTTATTTGGTTGGTGTTGGATGCCTATGCTTAGCATCAATTTTAAGACAGGTAGAGAGTTGATTTGTCTGTTGTTTAAAAAAATCTTCTTCACTTTTGCTATCTGATTATCTCATAGCGTGGCGAAGTTTGATTGCTTTCCATACTATTTGGTCTAGTGGTAAGGTGATCCTGCTCCCATTGCAGAAAAAACATACTTGGGTTTAAGAGTGTTATCAGTTGGAAATTCTGTGTGGAGATTTTTCCATTATTAATAAAATTATTTTCCTTTTAAAAAATCACATGGATGCTGTATGTTGAAAGTATTATATTATATATCCCATGTAATGGGCATAAATTTCAGAAACTCGGAGTTTATTCCTTTCTCCGCATCTCATCGTCTTTATTTGATCAGGAGGGAAACTTGTTAATCTTTAATTATTTGTCTCTTAGTAAGAATTCATTATGTTTAAACAGTCGACTAGTCCTTGATTGAGATAATATTTGGATCTGTCTCCATAATGGTTAGACTATTTCTATGAGTGCTTGGGGGAAGCCATACCCCTTTATTAGGATTAATTGCTTCAATGCGGTCACTATTTGCTAGATTTGATGCTTTGGTTGGCCTAAATCATGCTTCTTGATCTGTAAAATTTACGGATGGAGGAAACGTCTTCAGCACTGCTGCAAAAATTGATATGTTGCTTTTATTTTTTAAATTGCTGTTATCACAGATGTTTTACAACTCTACTCTGATCAATTGTAGGGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACT</genome_strand>
        <mrna_strand>GGATGACATCAAAATCAAG..........................................................................................................................................................................................................................................ACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAG................................................................................................................................................................................................................................................................................................................................................GGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTGATCGAAGATGTGGTGTTTGTGGACCTATTCTAATTGAGGAATTTAGCAAGCTCATTGAGTCCAAGAGCTTGAAAGACAAAGTTCGTGTGACAGCTTGTTCTCATATTGGTGGCCACAAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGGAATATTGTTGGCCACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGGACAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334750" ref_strand="+" ref_description="SGN-E334750 [cTOE-3-E6]">
      <seq>aaacctttcactcgcttttctgcacgagccctagttaacgccatggccggaacaccggagaacttctccaccgacgctactgccgacgctgccaacgccgacgaggacgtcaagtttgggtttcagcgttcggagatgtaccagagtaaacttgcaggtactacgacctcctatgatcgtcatctgttcctctgttacaagtctcacgagacttggcctgctcgccttgaagcttctgactccgatctgcttccaaagtcactctctgctgctcttaaagctcgcaaggatgacatcaaaatcaagactcttttgacaatatgcgaagtacgtgatgacatggaagtatcagaaggagatattctgatttttcctgaaatgatcaaatacagggatttgaaggagtcagatgtggatgcatttgttgatgatgtgcttgtcaatggcaatacttggagctctggattgcaggagtcgctgagtggttcttatgtgtttgtctgtgcccacaatcttcgtgatcgaagatgtggtgtttgtggacctattctaattgaggaatttagcaagctcattgagtccaagagcttgaaagacaaagttcgtgtgacagcttgttctcatattggtggccacaagtatgctggtaatgttataatcttcagctcaggaaaggacgggaatattgttggccactggtatggctatgttacgccaagtgatgtacctgctttgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="62016" stop="59626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61716" g_stop="61411" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61410" i_stop="61177" i_length="234">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61176" g_stop="61091" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="392" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61090" i_stop="60755" i_length="336">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60754" g_stop="60449" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="698" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60448" i_stop="59968" i_length="481">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59967" g_stop="59926" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="740" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E334750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61716" e_stop="61411"/>
          <exon e_start="61176" e_stop="61091"/>
          <exon e_start="60754" e_stop="60449"/>
          <exon e_start="59967" e_stop="59926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTTCACTCGCTTTTCTGCACGAGCCCTAGTTAACGCCATGGCCGGAACACCGGAGAACTTCTCCACCGACGCTACTGCCGACGCTGCCAACGCCGACGAGGACGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTACCAGAGTAAACTTGCAGGTACTACGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGACATCAAAATCAAGGTTAGGTTTTCTAAAACTGATTGTTTTTGTCAATAGGGGCTAGGAGAAACTTCATTGTTGTGATTACTGCGTCTTTATGTTCTAATGTCTAGAACGACTTAAAGGTAATATGTTGTCACTGGAATAATTTTCTGCTTATGTGATTATTTCTGGAGTGAATCCAACTGATTTGACATTTTGGTTTAGTTTATTGGTCGATATTGATTGATTTTTTCCGATGAGTGTTTGCTGTAGACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAGGTAGTTTATTTGTTCATTCATTTTTTCTAAAATTCGGCATTGAGCGGCACAAAGCTGATATTCCATGCATTGTGGGGGCTGACAAAATGACTCAATTTTAAACAAGAAAATGACAAATAAGATTCATGAATTTGACTTGATTCTATTAGCTGGATCCAAGTTTTCTGATATTTAGAAGAAAACGGTTTGTAGATACCACACTGAAGTCGCCTTTTAGTTTTCGTGCTTTCTCTTGGATAGCTTCAAAATGTCGATCTAAACGTGTATGCATTGTCGGATTCGTCCGGATCTGTTGAGTCTCGTGGTTTGCATTGAAGCCTTGTTTTTATGATGAAGGGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTGATCGAAGATGTGGTGTTTGTGGACCTATTCTAATTGAGGAATTTAGCAAGCTCATTGAGTCCAAGAGCTTGAAAGACAAAGTTCGTGTGACAGCTTGTTCTCATATTGGTGGCCACAAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGGAATATTGTTGGCCACTGGTAAGTCATATTTTTCAACGGACGACCTGGAATTTCACCACTAGCCTCCAGATCAATTTGTAATCTAACAACGGTAGCATGATTGAAAATGTTATTTTCATGAAGATAAAGTTATTTTTAAAATCTCTTACCTTGCAAACTATTATATACTGATAAAGGAGATGGAAGGTGGGAGATGGGTCATGTGGGGTCGGTGGGTGATATTTTCAAGTGCCAAATATTGACTCCATTAGTTACATATTGGTTGAAGCAAGTGCAATAAAGTAAGAGTTGTGGTACATTAGAGGAATGGTCATTTTCTCCATTCAGTGCAAAACATTTTCGTTGTGAGAAGATGTTGAACAATTAAGCCTACCTAGAAAATGATTTTGCAAAGAAAAACACACATTGCAAGCAGCATATCAAAGATCAATAAAGAAACTTTGCCTTAAGACTGTCCATTACATACATGTTATATGTGCTCTATGTTGTGTTAGTGCAGGTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGA</genome_strand>
        <mrna_strand>AAACCTTTCACTCGCTTTTCTGCACGAGCCCTAGTTAACGCCATGGCCGGAACACCGGAGAACTTCTCCACCGACGCTACTGCCGACGCTGCCAACGCCGACGAGGACGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTACCAGAGTAAACTTGCAGGTACTACGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGACATCAAAATCAAG..........................................................................................................................................................................................................................................ACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAG................................................................................................................................................................................................................................................................................................................................................GGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTGATCGAAGATGTGGTGTTTGTGGACCTATTCTAATTGAGGAATTTAGCAAGCTCATTGAGTCCAAGAGCTTGAAAGACAAAGTTCGTGTGACAGCTTGTTCTCATATTGGTGGCCACAAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGGAATATTGTTGGCCACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584415" ref_strand="+" ref_description="SGN-E584415 [10240]">
      <seq>atgtatcagagtaaacttgcaggtactgggacctcctatgatcgtcatctgttcctctgttacaaagtctcacgagacttggcctgcccgccttgaagcttctgactccgatctgcttcccaaagtcattctctgctgctcttaaagctcgcaaagatgatatcaaaatcaagactcttttgacaatatgcgaagtacgtgatgacatggaagtatcagaaggagatattctgatttttcctgaaatgatcaaatacagggatttgaaggagtcagatgtggatgcatttgttgatgatgtgcttgtcaatggcaatccttggagctctggattgcaggagtcactgagtggttcttatgttgttgtctgtgccccacaatcttcgtgatcgaagatgtggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="61881" stop="60312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61581" g_stop="61411" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61410" i_stop="61177" i_length="234">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61176" g_stop="61091" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="259" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61090" i_stop="60755" i_length="336">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60754" g_stop="60612" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="403" r_length="144" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E584415" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61581" e_stop="61411"/>
          <exon e_start="61176" e_stop="61091"/>
          <exon e_start="60754" e_stop="60612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTACCAGAGTAAACTTGCAGGTACTACGACCTCCTATGATCGTCATCTGTTCCTCTGTTAC-AAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTT-CCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGACATCAAAATCAAGGTTAGGTTTTCTAAAACTGATTGTTTTTGTCAATAGGGGCTAGGAGAAACTTCATTGTTGTGATTACTGCGTCTTTATGTTCTAATGTCTAGAACGACTTAAAGGTAATATGTTGTCACTGGAATAATTTTCTGCTTATGTGATTATTTCTGGAGTGAATCCAACTGATTTGACATTTTGGTTTAGTTTATTGGTCGATATTGATTGATTTTTTCCGATGAGTGTTTGCTGTAGACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAGGTAGTTTATTTGTTCATTCATTTTTTCTAAAATTCGGCATTGAGCGGCACAAAGCTGATATTCCATGCATTGTGGGGGCTGACAAAATGACTCAATTTTAAACAAGAAAATGACAAATAAGATTCATGAATTTGACTTGATTCTATTAGCTGGATCCAAGTTTTCTGATATTTAGAAGAAAACGGTTTGTAGATACCACACTGAAGTCGCCTTTTAGTTTTCGTGCTTTCTCTTGGATAGCTTCAAAATGTCGATCTAAACGTGTATGCATTGTCGGATTCGTCCGGATCTGTTGAGTCTCGTGGTTTGCATTGAAGCCTTGTTTTTATGATGAAGGGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTG-CCCACAATCTTCGTGATCGAAGATGTGGTG</genome_strand>
        <mrna_strand>ATGTATCAGAGTAAACTTGCAGGTACTGGGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAAGTCTCACGAGACTTGGCCTGCCCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCCAAAGTCATTCTCTGCTGCTCTTAAAGCTCGCAAAGATGATATCAAAATCAAG..........................................................................................................................................................................................................................................ACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAG................................................................................................................................................................................................................................................................................................................................................GGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATCCTTGGAGCTCTGGATTGCAGGAGTCACTGAGTGGTTCTTATGTTGTTGTCTGTGCCCCACAATCTTCGTGATCGAAGATGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336539" ref_strand="+" ref_description="SGN-E336539 [cTOE-4-P20]">
      <seq>aaaacctttcactcgcttttctgcacgagccctagttaacgccatggccggaacaccggagaacttctccaccgacgctactgccgacgctgccaacgccgacgaggacgtcaagtttgggtttcagcgttcggagatgtaccagagtaaacttgcaggtactacgacctcctatgatcgtcatctgttcctctgttacaagtctcacgagacttggcctgctcgccttgaagcttctgactccgatctgcttccaaagtcactctctgctgctcttaaagctcgcaaggatgacatcaaaatcaagactcttttgacaatatgcgaagtacgtgatgacatggaagtatcagaaggagatattctgatttttcctgaaatgatcaaatacagggatttgaaggagtcagatgtggatgcatttgttgatgatgtgcttgtcaatggcaatacttggagctctggattgcaggagtcgctgagtggttcttatgtgtttgtctgtgcccacaatcttcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="62017" stop="60327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61717" g_stop="61411" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61410" i_stop="61177" i_length="234">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61176" g_stop="61091" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="393" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61090" i_stop="60755" i_length="336">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60754" g_stop="60627" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="521" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E336539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61717" e_stop="61411"/>
          <exon e_start="61176" e_stop="61091"/>
          <exon e_start="60754" e_stop="60627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTTTCACTCGCTTTTCTGCACGAGCCCTAGTTAACGCCATGGCCGGAACACCGGAGAACTTCTCCACCGACGCTACTGCCGACGCTGCCAACGCCGACGAGGACGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTACCAGAGTAAACTTGCAGGTACTACGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGACATCAAAATCAAGGTTAGGTTTTCTAAAACTGATTGTTTTTGTCAATAGGGGCTAGGAGAAACTTCATTGTTGTGATTACTGCGTCTTTATGTTCTAATGTCTAGAACGACTTAAAGGTAATATGTTGTCACTGGAATAATTTTCTGCTTATGTGATTATTTCTGGAGTGAATCCAACTGATTTGACATTTTGGTTTAGTTTATTGGTCGATATTGATTGATTTTTTCCGATGAGTGTTTGCTGTAGACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAGGTAGTTTATTTGTTCATTCATTTTTTCTAAAATTCGGCATTGAGCGGCACAAAGCTGATATTCCATGCATTGTGGGGGCTGACAAAATGACTCAATTTTAAACAAGAAAATGACAAATAAGATTCATGAATTTGACTTGATTCTATTAGCTGGATCCAAGTTTTCTGATATTTAGAAGAAAACGGTTTGTAGATACCACACTGAAGTCGCCTTTTAGTTTTCGTGCTTTCTCTTGGATAGCTTCAAAATGTCGATCTAAACGTGTATGCATTGTCGGATTCGTCCGGATCTGTTGAGTCTCGTGGTTTGCATTGAAGCCTTGTTTTTATGATGAAGGGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTG</genome_strand>
        <mrna_strand>AAAACCTTTCACTCGCTTTTCTGCACGAGCCCTAGTTAACGCCATGGCCGGAACACCGGAGAACTTCTCCACCGACGCTACTGCCGACGCTGCCAACGCCGACGAGGACGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTACCAGAGTAAACTTGCAGGTACTACGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGACATCAAAATCAAG..........................................................................................................................................................................................................................................ACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAG................................................................................................................................................................................................................................................................................................................................................GGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449515" ref_strand="+" ref_description="SGN-E449515 [cSTS-6-B2]">
      <seq>attttgcttgcacttctctccaaaacccttcactcgcttatctgcgcaatccctagttaacgccatggtcggaacaccggagaacttctccaccgacgctactgccgacgccggcaacgccgacgaggatgtcaagtttgggtttcagcgttcggagatgtatcagagtaaacttgcaggtactgcgacctcctatgatcgtcatctgttcctctgttacaagtctcacgagacttggcctgctcgccttgaagcttctgactccgatctgcttcccaagtcattctctgctgctcttaaagctcgcaaagatgatatcaaaatcaagactcttttgacaatatgcgaagtacgtgatgacatggaagtatcagaaggagatattctgatttttcctgaaatgatcaaatacagggatttgaaggagtcagatgtggatgcatttgttgatgatgtgcttgtcaatggcaatccttggagctctggattgcaggagtcgctgagtgggtcttatgtgtttgtctgtgccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="62038" stop="60338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61738" g_stop="61411" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61410" i_stop="61177" i_length="234">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61176" g_stop="61091" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="414" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61090" i_stop="60755" i_length="336">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60754" g_stop="60638" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="531" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E449515" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61738" e_stop="61411"/>
          <exon e_start="61176" e_stop="61091"/>
          <exon e_start="60754" e_stop="60638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGCTTGCACTTCTCTCCAAAACCTTTCACTCGCTTTTCTGCACGAGCCCTAGTTAACGCCATGGCCGGAACACCGGAGAACTTCTCCACCGACGCTACTGCCGACGCTGCCAACGCCGACGAGGACGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTACCAGAGTAAACTTGCAGGTACTACGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGACATCAAAATCAAGGTTAGGTTTTCTAAAACTGATTGTTTTTGTCAATAGGGGCTAGGAGAAACTTCATTGTTGTGATTACTGCGTCTTTATGTTCTAATGTCTAGAACGACTTAAAGGTAATATGTTGTCACTGGAATAATTTTCTGCTTATGTGATTATTTCTGGAGTGAATCCAACTGATTTGACATTTTGGTTTAGTTTATTGGTCGATATTGATTGATTTTTTCCGATGAGTGTTTGCTGTAGACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAGGTAGTTTATTTGTTCATTCATTTTTTCTAAAATTCGGCATTGAGCGGCACAAAGCTGATATTCCATGCATTGTGGGGGCTGACAAAATGACTCAATTTTAAACAAGAAAATGACAAATAAGATTCATGAATTTGACTTGATTCTATTAGCTGGATCCAAGTTTTCTGATATTTAGAAGAAAACGGTTTGTAGATACCACACTGAAGTCGCCTTTTAGTTTTCGTGCTTTCTCTTGGATAGCTTCAAAATGTCGATCTAAACGTGTATGCATTGTCGGATTCGTCCGGATCTGTTGAGTCTCGTGGTTTGCATTGAAGCCTTGTTTTTATGATGAAGGGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCA</genome_strand>
        <mrna_strand>ATTTTGCTTGCACTTCTCTCCAAAACCCTTCACTCGCTTATCTGCGCAATCCCTAGTTAACGCCATGGTCGGAACACCGGAGAACTTCTCCACCGACGCTACTGCCGACGCCGGCAACGCCGACGAGGATGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTATCAGAGTAAACTTGCAGGTACTGCGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCCAAGTCATTCTCTGCTGCTCTTAAAGCTCGCAAAGATGATATCAAAATCAAG..........................................................................................................................................................................................................................................ACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAG................................................................................................................................................................................................................................................................................................................................................GGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATCCTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGGTCTTATGTGTTTGTCTGTGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423008" ref_strand="+" ref_description="SGN-E423008 [STM-41-I18]">
      <seq>attttgcttgcacttctctccaaaacccttcactcgcttatctgcgcaatccctagttaacgccatggtcggaacaccggagaacttctccaccgacgctactgccgacgccggcaacgccgacgaggatgtcaagtttgggtttcagcgttcggagatgtatcagagtaaacttgcaggtactgcgacctcctatgatcgtcatctgttcctctgttacaagtctcacgagacttggcctgctcgccttgaagcttctgactccgatctgcttcccaagtcattctctgctgctccttaagctcgcaaagatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="62038" stop="61124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61738" g_stop="61423" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E423008" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61738" e_stop="61423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGCTTGCACTTCTCTCCAAAACCTTTCACTCGCTTTTCTGCACGAGCCCTAGTTAACGCCATGGCCGGAACACCGGAGAACTTCTCCACCGACGCTACTGCCGACGCTGCCAACGCCGACGAGGACGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTACCAGAGTAAACTTGCAGGTACTACGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGAC</genome_strand>
        <mrna_strand>ATTTTGCTTGCACTTCTCTCCAAAACCCTTCACTCGCTTATCTGCGCAATCCCTAGTTAACGCCATGGTCGGAACACCGGAGAACTTCTCCACCGACGCTACTGCCGACGCCGGCAACGCCGACGAGGATGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTATCAGAGTAAACTTGCAGGTACTGCGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCCAAGTCATTCTCTGCTGCTCCTTAAGCTCGCAAAGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366205" ref_strand="+" ref_description="SGN-E366205 [cLPT-1-K17](-)">
      <seq>acagcccttgaaatttcctgaaacacctagtgttagttttgcagcaagggacttgataagaggcctactcgtgaaggagccacaacatcgccttgcatataggcgaggggctactgaaataaaacaacatcctttcttccagaatgtgaactgggcacttataagatgtaccagtcctccagatgtaccaaagccgtcctccatgacatatgatatgccccgaacaccaccagcaggaaaggcccccggacttgatgtgaagccttcaggtaattattttgagattgatttcttctgaagaattcttttccttggcagcaatgccctcattgccattctacgaagagctcaacgttgaagaagacacagtttttgtgttcctttatgctaatgtgaagtgcatactctgttaaatgcaagatgcataggaattagatggtgaaggccatttttctttgtataagtatgttgttgatattaatgaagaaggccttgatgtggctataaagctaggcattgctggatgtgatgttttaagctttttcaattgaagaatcaaaagttgatgtgccataatccagtcatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="63338" stop="62147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63038" g_stop="62441" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E366205" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63038" e_stop="62441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCCTTGAAATTTCCTGAAACACCTAGTGTTAGTTTTGCAGCAAGGGACTTGATAAGAGGCCTACTTGTGAAGGAGCCACAACATCGCCTTGCATATAGGCGAGGGGCTACTGAAATAAAACAACATCCTTTCTTCCAGAATGTGAACTGGGCACTTATAAGATGTACCAGTCCTCCAGATGTACCAAAGCCGTCCTCCATGACATATGATATGCCCCGAACACCACCAGCAGGAAAGGCCCCCGGACTTGATGTGAAGCCTTCAGGTAATTATTTTGAGATTGATTTCTTCTGAAGAATTCTTTTCCTTGGCAGCAATGCCCCCATTGCCGTTCTACGAAGAGCTCAACGTTGAGGAAGACACAGTTTTTGTGTTCCTTTATGCTAATGTAAAGTGCATACTCTGTTGAAATGCAAGATGCATAGGAATTAGATGGTGAAGGCCATTTTTCTTTGTATAAGTATGTTGTTGATATTAATGAAGAAGGCCTTGATGTGGCTATAAAGCTAGGCATTGCTGGATGTGATGTTTTAA-AATTTTCAATTGAAGAATCAAAAGTTGATGTGCCATAATCCAGTCATTTAAAAAGTTGAT</genome_strand>
        <mrna_strand>ACAGCCCTTGAAATTTCCTGAAACACCTAGTGTTAGTTTTGCAGCAAGGGACTTGATAAGAGGCCTACTCGTGAAGGAGCCACAACATCGCCTTGCATATAGGCGAGGGGCTACTGAAATAAAACAACATCCTTTCTTCCAGAATGTGAACTGGGCACTTATAAGATGTACCAGTCCTCCAGATGTACCAAAGCCGTCCTCCATGACATATGATATGCCCCGAACACCACCAGCAGGAAAGGCCCCCGGACTTGATGTGAAGCCTTCAGGTAATTATTTTGAGATTGATTTCTTCTGAAGAATTCTTTTCCTTGGCAGCAATGCCCTCATTGCCATTCTACGAAGAGCTCAACGTTGAAGAAGACACAGTTTTTGTGTTCCTTTATGCTAATGTGAAGTGCATACTCTGTT-AAATGCAAGATGCATAGGAATTAGATGGTGAAGGCCATTTTTCTTTGTATAAGTATGTTGTTGATATTAATGAAGAAGGCCTTGATGTGGCTATAAAGCTAGGCATTGCTGGATGTGATGTTTTAAGCTTTTTCAATTGAAGAATCAAAAGTTGATGTGCCATAATCCAGTCATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542892" ref_strand="+" ref_description="SGN-E542892 [TUS-64-G21](-)">
      <seq>aggacacggcagtgctgtagattggtggacatttgggatctttctctatgaactcttgtttggacaaactcctttcaaaggtgcaggcaacagggcaacattgtttaacgttgttggacagcccttgaaatttcctgaaacacctagtgttagttttgcagcaagggacttgataagaggcctacttgtgaaggagccacaacatcgccttgcatataggcgaggggctactgaaataaaacaacatcctttcttccagaatgtgaactgggcacttataagatgtaccagtcctccagatgtaccaaagccgtcctccatgacatatgatatgccccgaacaccaccagcaggaaaggcccccggacttgatgtgaagccttcaggtaattattttgagattgatttcttctgaagaattcttttccttggcagcaatgcccccattgccgttttacgaagagctcaacgttgaggaagacacagtttttgtgttcctttatgctaatgtaaagtgcatactctgttgaaatgcaagatgcataggaattagatggtgaaggccatttttctttgtataagtatgttgttgatattaatgaagaaggccttgatgtggctataaagctaggcattgctggatgtgatgttttaaaattttcaattgaagaatcaaaagttgatgtgccaaaaaaaaaaaaggaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="63455" stop="62163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63155" g_stop="62467" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="702"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E542892" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63155" e_stop="62467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACACGGCAGTGCTGTAGATTGGTGGACATTTGGGATCTTTCTCTATGAACTCTTGTTTGGACAAACTCCTTTCAAAGGTGCAGGCAACAGGGCAACATTGTTTAACGTTGTTGGACAGCCCTTGAAATTTCCTGAAACACCTAGTGTTAGTTTTGCAGCAAGGGACTTGATAAGAGGCCTACTTGTGAAGGAGCCACAACATCGCCTTGCATATAGGCGAGGGGCTACTGAAATAAAACAACATCCTTTCTTCCAGAATGTGAACTGGGCACTTATAAGATGTACCAGTCCTCCAGATGTACCAAAGCCGTCCTCCATGACATATGATATGCCCCGAACACCACCAGCAGGAAAGGCCCCCGGACTTGATGTGAAGCCTTCAGGTAATTATTTTGAGATTGATTTCTTCTGAAGAATTCTTTTCCTTGGCAGCAATGCCCCCATTGCCGTTCTACGAAGAGCTCAACGTTGAGGAAGACACAGTTTTTGTGTTCCTTTATGCTAATGTAAAGTGCATACTCTGTTGAAATGCAAGATGCATAGGAATTAGATGGTGAAGGCCATTTTTCTTTGTATAAGTATGTTGTTGATATTAATGAAGAAGGCCTTGATGTGGCTATAAAGCTAGGCATTGCTGGATGTGATGTTTTAAAATTTTCAATTGAAGAATCAAAAGTTGATGTGCC</genome_strand>
        <mrna_strand>AGGACACGGCAGTGCTGTAGATTGGTGGACATTTGGGATCTTTCTCTATGAACTCTTGTTTGGACAAACTCCTTTCAAAGGTGCAGGCAACAGGGCAACATTGTTTAACGTTGTTGGACAGCCCTTGAAATTTCCTGAAACACCTAGTGTTAGTTTTGCAGCAAGGGACTTGATAAGAGGCCTACTTGTGAAGGAGCCACAACATCGCCTTGCATATAGGCGAGGGGCTACTGAAATAAAACAACATCCTTTCTTCCAGAATGTGAACTGGGCACTTATAAGATGTACCAGTCCTCCAGATGTACCAAAGCCGTCCTCCATGACATATGATATGCCCCGAACACCACCAGCAGGAAAGGCCCCCGGACTTGATGTGAAGCCTTCAGGTAATTATTTTGAGATTGATTTCTTCTGAAGAATTCTTTTCCTTGGCAGCAATGCCCCCATTGCCGTTTTACGAAGAGCTCAACGTTGAGGAAGACACAGTTTTTGTGTTCCTTTATGCTAATGTAAAGTGCATACTCTGTTGAAATGCAAGATGCATAGGAATTAGATGGTGAAGGCCATTTTTCTTTGTATAAGTATGTTGTTGATATTAATGAAGAAGGCCTTGATGTGGCTATAAAGCTAGGCATTGCTGGATGTGATGTTTTAAAATTTTCAATTGAAGAATCAAAAGTTGATGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745720" ref_strand="+" ref_description="SGN-E745720 [GI|47105150]">
      <seq>ggaagatgaaggagaaaacagagtaaaatatagaaagagaaagagagagaaaatcttatgtatcaatttcttgactaagctctattctatttcatttgtttgttgtgagttttgtttgattgattcatttactctgtttgtatccaaatataataattagtcactcactctttttattgttacgatcggatctgaaaaagggagaggacccagaaagaaaaaggtgcaaagctgttaccctttttaagtggaaagggtctcaataatcatggcacatcattcatttttctccatttgataatcagtgtttataccaaaaaattacaatggagtctcttgttgatggaatcagttccttgccgaacgttcacaattcattcgctgcggttgagtgcaatacatctttggcctccaagataagtcatcctcctttgatgaaacaatccgaaaacaaagaggcatctatctcatatccaatagcgatggaccttggttccaccgtagctcatactcaaactggatcagtgactggttcaaagcattttaaagcaaatgaagatactgtaaatcaatcagcagaaggttgttcaggagaacaggttttggctttggaaactgaatcatctatcaaggatttacatcatgtttcgaaaaatggtacttcaaacgatgatttgaatgcgactgccaaagactcaggaatcacctactgtcctagtcctcaaaacagtttttattctgctacacagtacacagaagccaaacaaagtttttccaacacagaagtcagtgaatgcgctagcagcactgtggacaagtctggtgaaagtggtgatgttagcaactcttgtgatcttgttgagagcagaaaaacaagcttctacagaggcagcacaggtagtgacgttagtgatgaaagcagctctagtagtttcaatagcacagtatataaaccacataaggcaaatgatacaaggtgggatgcaatacaagttattagagcccgtgagggaacattgggttttaaccactttagactgttgaagagattgggatgtggtgatataggaagtgtttttctagcagagttgattggcacaagatgtttctttgccatgaaagtgatggacaaggcagctctagaaagtcgcaagaaactcgtgagagctcaaacggaaagagagatactgcagtctctggatcatccctttctaccaacactgtattcgcactttgaaacagataaattttcgtgcttggtgatggaattctgccctggtggagatttgcatgcacttaggcaaaagcagccaggaaaattcttcccggagcatgctgccaggttttacgtggctgaagtccttcttgctctagagtacttgcacatgcttggaatcatttacagagaccttaaaccagagaatgttttggttcgagaagatggccatataatgctttctgattttgacctctccttgaggtgtgccgtgagcccaactctagttagatcttcaaattcaagcttagagtgcaagagctcatcatactgtgtccagcctgcttgtattgagccatcttgtgtcgtacagcctgcatgtatacaaccttcatgttttacaccacgttttctaagcaagaacaagaaagaaaagaagtccaaacaaaagacagaaacatataaccaagtgaaccagcctcttccagaactccttgctgaaccaacgagtgctcgatcaatgtcttttgtgggaacacatgagtacctagctccagaaattataaagggtgaaggacacggcagtgctgtagattggtggacatttgggatctttctctatgaactcttgtttggacaaactcctttcaaaggtgcaggcaacagggcaacattgtttaacgttgttggacagcccttgaaatttcctgaaacacctagtgttagttttgcagcaagggacttgataagaggcctacttgtgaaggagccacaacatcgccttgcatataggcgaggggctactgaaataaaacaacatcctttcttccagaatgtgaactgggcacttataagatgtaccagtcctccagatgtaccaaagccgtcctccatgacatatgatatgccccgaacaccaccagcaggaaaggcccccggacttgatgtgaagccttcaggtaattattttgagattgatttcttctgaagaattcttttccttggcagcaatgcccccattgccgttctacgaagagctcaacgttgaggaagacacagtttttgtgttcctttatgctaatgtaaagtgcatactctgttgaaatgcaagatgcataggaattagatggtgaaggccatttttctttgtataagtatgttgttgatattaatgaaggaggccttgatgtggctataaagctaggcattgctggcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="66385" stop="62215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66086" g_stop="65782" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65781" i_stop="65356" i_length="426">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.257" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65355" g_stop="64319" g_length="1037"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="1342" r_length="1037" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64318" i_stop="63603" i_length="716">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63602" g_stop="62513" g_length="1090"/>
          <reference_exon_boundary r_type="cDNA" r_start="1343" r_stop="2432" r_length="1090" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2433" polyA_stop="2447"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E745720" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2432</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66086" e_stop="65782"/>
          <exon e_start="65355" e_stop="64319"/>
          <exon e_start="63602" e_stop="62513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGAAGGAGAAAACAGAGTAAAATATAGAAAGAGAAAGAGAGAGAAAATCTTATGTATCAATTTCTTGACTAAGCTCTATTCTATTTCATTTGTTTGTTGTGAGTTTTGTTTGATTGATTCATTTACTCTGTTTGTATCCAAATATAATAATTAGTCACTCACTCTTTTTATTGTTACGATCGGATCTGAAAAAGGGAGAGGACCCAGAAAGAAAAAGGTGCAAAGCTGTTACCCTTTTTAAGTGGAAAGGGTCTCAATAATCATGGCACATCATTCATTTTTCTCCATTTGATAATCAGGTGATTTCAACAACCTATTACTCTCTCTGTCCACTTTTTTTTTTTTTGATTTATTTGTGGATATACATCTTTTCATTGATCCTTTTGGTGGAATTCTATGATCATTTAATTCTGTGATTTTACTGCAATTCTATGTAAAGTTTTGTAATCAATGCTACATTATGAGATGACCGAATCAATTTATGGTAAAATTATTCAAAATTTAGTTGAAAATTGTGAAATTTGAAAAAAAAAGTATTTAATTTTGTTTTCAAAATGGAAATTGGAGTTATATATGACCATGATATTGGTATTTTTCAAAAGTTGAATTTCGGATTTAAAGCCAAAAATGATCTCCAGAATTCAACTCCGGGAAAGAGTAAAAAGTATTCATGGTCAAACTGTTAAGTAGCTAATTTTTCTTCACTTTTAATTGTGTAATGACAGTGTTTATACCAAAAAATTACAATGGAGTCTCTTGTTGATGGAATCAGTTCCTTGCCGAACGTTCACAATTCATTCGCTGCGGTTGAGTGCAATACATCTTTGGCCTCCAAGATAAGTCATCCTCCTTTGATGAAACAATCCGAAAACAAAGAGGCATCTATCTCATATCCAATAGCGATGGACCTTGGTTCCACCGTAGCTCATACTCAAACTGGATCAGTGACTGGTTCAAAGCATTTTAAAGCAAATGAAGATACTGTAAATCAATCAGCAGAAGGTTGTTCAGGAGAACAGGTTTTGGCTTTGGAAACTGAATCATCTATCAAGGATTTACATCATGTTTCGAAAAATGGTACTTCAAACGATGATTTGAATGCGACTGCCAAAGACTCAGGAATCACCTACTGTCCTAGTCCTCAAAACAGTTTTTATTCTGCTACACAGTACACAGAAGCCAAACAAAGTTTTTCCAACACAGAAGTCAGTGAATGCGCTAGCAGCACTGTGGACAAGTCTGGTGAAAGTGGTGATGTTAGCAACTCTTGTGATCTTGTTGAGAGCAGAAAAACAAGCTTCTACAGAGGCAGCACAGGTAGTGACGTTAGTGATGAAAGCAGCTCTAGTAGTTTCAATAGCACAGTATATAAACCACATAAGGCAAATGATACAAGGTGGGATGCAATACAAGTTATTAGAGCCCGTGAGGGAACATTGGGTTTTAACCACTTTAGACTGTTGAAGAGATTGGGATGTGGTGATATAGGAAGTGTTTTTCTAGCAGAGTTGATTGGCACAAGATGTTTCTTTGCCATGAAAGTGATGGACAAGGCAGCTCTAGAAAGTCGCAAGAAACTCGTGAGAGCTCAAACGGAAAGAGAGATACTGCAGTCTCTGGATCATCCCTTTCTACCAACACTGTATTCGCACTTTGAAACAGATAAATTTTCGTGCTTGGTGATGGAATTCTGCCCTGGTGGAGATTTGCATGCACTTAGGCAAAAGCAGCCAGGAAAATTCTTCCCGGAGCATGCTGCCAGGTTAGTGTTTGTCCGCATATCATATTCACCTCTTTGCTTTGTGTTCAAAATATCCAACTATCGCTGCGATCTTAATGAATAAAGAACTTTTAACATTGCTTCCTGTATAAACCAATCTGTTACCATCATCGTTATGCTTTAAGTGTCTTAAAAGTTCATAATAGTGGAAATGACTTTAATCTATTATGCAAGGAAGATCCTGTGCATATATGCCTTCTTCTAACTGTCTCACCTCTTTAGGCATTGCGCTCAAACAATGATGAGTGAGATCCACTGCTCTGTGCTTATAGCTGTTGACTTTTTTTCCCCAGCTGTTTATTAGATCCGTATCTGTATGTTTGCCTTGATATCTCTTCAATTAAACATGTTGCTTATTTCCTAGCCTTTTGTAATTTTTCTCAACATTGAGTTCAGACCTTTCTTGTTGTGTGCAGTCCCAGTAGCAAATATTGTTTTCCAGTTGCATGCTCGTATTCATCACTGTCATTTGGAAACTGACTGGTATAATGTTCTAAAATTTTGTTAGCTGGGGCCAAGGGAATTGAATATAACCGAGTAGTTTGTTTCGTAGGAACCAAAGATAAGTCCATTCAGATAGACTTGAGACGTTACATCTACCGTAATCAATGATAGTTTAGGTTGGAGTTACGTAGTTATGACTTATGATTGAGTTTTGTTATGATTTTTACTATTGATTCTTTTTATTGGGAATATAGGTTTTACGTGGCTGAAGTCCTTCTTGCTCTAGAGTACTTGCACATGCTTGGAATCATTTACAGAGACCTTAAACCAGAGAATGTTTTGGTTCGAGAAGATGGCCATATAATGCTTTCTGATTTTGACCTCTCCTTGAGGTGTGCCGTGAGCCCAACTCTAGTTAGATCTTCAAATTCAAGCTTAGAGTGCAAGAGCTCATCATACTGTGTCCAGCCTGCTTGTATTGAGCCATCTTGTGTCGTACAGCCTGCATGTATACAACCTTCATGTTTTACACCACGTTTTCTAAGCAAGAACAAGAAAGAAAAGAAGTCCAAACAAAAGACAGAAACATATAACCAAGTGAACCGGCCTCTTCCAGAACTCCTTGCTGAACCAACGAGTGCTCGATCAATGTCTTTTGTGGGAACACATGAGTACCTAGCTCCAGAAATTATAAAGGGTGAAGGACACGGCAGTGCTGTAGATTGGTGGACATTTGGGATCTTTCTCTATGAACTCTTGTTTGGACAAACTCCTTTCAAAGGTGCAGGCAACAGGGCAACATTGTTTAACGTTGTTGGACAGCCCTTGAAATTTCCTGAAACACCTAGTGTTAGTTTTGCAGCAAGGGACTTGATAAGAGGCCTACTTGTGAAGGAGCCACAACATCGCCTTGCATATAGGCGAGGGGCTACTGAAATAAAACAACATCCTTTCTTCCAGAATGTGAACTGGGCACTTATAAGATGTACCAGTCCTCCAGATGTACCAAAGCCGTCCTCCATGACATATGATATGCCCCGAACACCACCAGCAGGAAAGGCCCCCGGACTTGATGTGAAGCCTTCAGGTAATTATTTTGAGATTGATTTCTTCTGAAGAATTCTTTTCCTTGGCAGCAATGCCCCCATTGCCGTTCTACGAAGAGCTCAACGTTGAGGAAGACACAGTTTTTGTGTTCCTTTATGCTAATGTAAAGTGCATACTCTGTTGAAATGCAAGATGCATAGGAATTAGATGGTGAAGGCCATTTTTCTTTGTATAAGTATGTTGTTGATATTAATGAAGAAGGCCTTGATGTGGCTATAAAGCTAGGCATTGCTGGAT</genome_strand>
        <mrna_strand>GGAAGATGAAGGAGAAAACAGAGTAAAATATAGAAAGAGAAAGAGAGAGAAAATCTTATGTATCAATTTCTTGACTAAGCTCTATTCTATTTCATTTGTTTGTTGTGAGTTTTGTTTGATTGATTCATTTACTCTGTTTGTATCCAAATATAATAATTAGTCACTCACTCTTTTTATTGTTACGATCGGATCTGAAAAAGGGAGAGGACCCAGAAAGAAAAAGGTGCAAAGCTGTTACCCTTTTTAAGTGGAAAGGGTCTCAATAATCATGGCACATCATTCATTTTTCTCCATTTGATAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATACCAAAAAATTACAATGGAGTCTCTTGTTGATGGAATCAGTTCCTTGCCGAACGTTCACAATTCATTCGCTGCGGTTGAGTGCAATACATCTTTGGCCTCCAAGATAAGTCATCCTCCTTTGATGAAACAATCCGAAAACAAAGAGGCATCTATCTCATATCCAATAGCGATGGACCTTGGTTCCACCGTAGCTCATACTCAAACTGGATCAGTGACTGGTTCAAAGCATTTTAAAGCAAATGAAGATACTGTAAATCAATCAGCAGAAGGTTGTTCAGGAGAACAGGTTTTGGCTTTGGAAACTGAATCATCTATCAAGGATTTACATCATGTTTCGAAAAATGGTACTTCAAACGATGATTTGAATGCGACTGCCAAAGACTCAGGAATCACCTACTGTCCTAGTCCTCAAAACAGTTTTTATTCTGCTACACAGTACACAGAAGCCAAACAAAGTTTTTCCAACACAGAAGTCAGTGAATGCGCTAGCAGCACTGTGGACAAGTCTGGTGAAAGTGGTGATGTTAGCAACTCTTGTGATCTTGTTGAGAGCAGAAAAACAAGCTTCTACAGAGGCAGCACAGGTAGTGACGTTAGTGATGAAAGCAGCTCTAGTAGTTTCAATAGCACAGTATATAAACCACATAAGGCAAATGATACAAGGTGGGATGCAATACAAGTTATTAGAGCCCGTGAGGGAACATTGGGTTTTAACCACTTTAGACTGTTGAAGAGATTGGGATGTGGTGATATAGGAAGTGTTTTTCTAGCAGAGTTGATTGGCACAAGATGTTTCTTTGCCATGAAAGTGATGGACAAGGCAGCTCTAGAAAGTCGCAAGAAACTCGTGAGAGCTCAAACGGAAAGAGAGATACTGCAGTCTCTGGATCATCCCTTTCTACCAACACTGTATTCGCACTTTGAAACAGATAAATTTTCGTGCTTGGTGATGGAATTCTGCCCTGGTGGAGATTTGCATGCACTTAGGCAAAAGCAGCCAGGAAAATTCTTCCCGGAGCATGCTGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACGTGGCTGAAGTCCTTCTTGCTCTAGAGTACTTGCACATGCTTGGAATCATTTACAGAGACCTTAAACCAGAGAATGTTTTGGTTCGAGAAGATGGCCATATAATGCTTTCTGATTTTGACCTCTCCTTGAGGTGTGCCGTGAGCCCAACTCTAGTTAGATCTTCAAATTCAAGCTTAGAGTGCAAGAGCTCATCATACTGTGTCCAGCCTGCTTGTATTGAGCCATCTTGTGTCGTACAGCCTGCATGTATACAACCTTCATGTTTTACACCACGTTTTCTAAGCAAGAACAAGAAAGAAAAGAAGTCCAAACAAAAGACAGAAACATATAACCAAGTGAACCAGCCTCTTCCAGAACTCCTTGCTGAACCAACGAGTGCTCGATCAATGTCTTTTGTGGGAACACATGAGTACCTAGCTCCAGAAATTATAAAGGGTGAAGGACACGGCAGTGCTGTAGATTGGTGGACATTTGGGATCTTTCTCTATGAACTCTTGTTTGGACAAACTCCTTTCAAAGGTGCAGGCAACAGGGCAACATTGTTTAACGTTGTTGGACAGCCCTTGAAATTTCCTGAAACACCTAGTGTTAGTTTTGCAGCAAGGGACTTGATAAGAGGCCTACTTGTGAAGGAGCCACAACATCGCCTTGCATATAGGCGAGGGGCTACTGAAATAAAACAACATCCTTTCTTCCAGAATGTGAACTGGGCACTTATAAGATGTACCAGTCCTCCAGATGTACCAAAGCCGTCCTCCATGACATATGATATGCCCCGAACACCACCAGCAGGAAAGGCCCCCGGACTTGATGTGAAGCCTTCAGGTAATTATTTTGAGATTGATTTCTTCTGAAGAATTCTTTTCCTTGGCAGCAATGCCCCCATTGCCGTTCTACGAAGAGCTCAACGTTGAGGAAGACACAGTTTTTGTGTTCCTTTATGCTAATGTAAAGTGCATACTCTGTTGAAATGCAAGATGCATAGGAATTAGATGGTGAAGGCCATTTTTCTTTGTATAAGTATGTTGTTGATATTAATGAAGGAGGCCTTGATGTGGCTATAAAGCTAGGCATTGCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366204" ref_strand="+" ref_description="SGN-E366204 [cLPT-1-K17]">
      <seq>tggagatttgcatgcacttaggcaaaagcagccaggaaaattcttcccggagcatgctgccaggttttacgtggctgaagtccttcttgctctagagtacttgcacatgcttggaatcatttacagagaccttaaaccagagaatgttttggttcgagaagatggccatataatgctttctgattttgacctctccttgaggtgtgccgtgagcccaactctagttagatcttcaaattcaagcttagagtgcaagagctcatcatattgtgtccagcctgcttgtattgagccatcttgtgtcgtacagcctgcatgtatccaaccttcatgttttacaccgcgttttctaagcaagaacaagaaagaaaagaagtccaaacaaaagactgaaacatataaccaagtgaaccggcctcttccggaactccttgctgaaccaacgagtgctcgatcaatgtcttttgtgggaacacatgagtacctagctccagaaattataaagggtgaaggacacggcagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="64681" stop="62840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64381" g_stop="64319" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64318" i_stop="63603" i_length="716">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63602" g_stop="63140" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="526" r_length="463" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E366204" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64381" e_stop="64319"/>
          <exon e_start="63602" e_stop="63140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATTTGCATGCACTTAGGCAAAAGCAGCCAGGAAAATTCTTCCCGGAGCATGCTGCCAGGTTAGTGTTTGTCCGCATATCATATTCACCTCTTTGCTTTGTGTTCAAAATATCCAACTATCGCTGCGATCTTAATGAATAAAGAACTTTTAACATTGCTTCCTGTATAAACCAATCTGTTACCATCATCGTTATGCTTTAAGTGTCTTAAAAGTTCATAATAGTGGAAATGACTTTAATCTATTATGCAAGGAAGATCCTGTGCATATATGCCTTCTTCTAACTGTCTCACCTCTTTAGGCATTGCGCTCAAACAATGATGAGTGAGATCCACTGCTCTGTGCTTATAGCTGTTGACTTTTTTTCCCCAGCTGTTTATTAGATCCGTATCTGTATGTTTGCCTTGATATCTCTTCAATTAAACATGTTGCTTATTTCCTAGCCTTTTGTAATTTTTCTCAACATTGAGTTCAGACCTTTCTTGTTGTGTGCAGTCCCAGTAGCAAATATTGTTTTCCAGTTGCATGCTCGTATTCATCACTGTCATTTGGAAACTGACTGGTATAATGTTCTAAAATTTTGTTAGCTGGGGCCAAGGGAATTGAATATAACCGAGTAGTTTGTTTCGTAGGAACCAAAGATAAGTCCATTCAGATAGACTTGAGACGTTACATCTACCGTAATCAATGATAGTTTAGGTTGGAGTTACGTAGTTATGACTTATGATTGAGTTTTGTTATGATTTTTACTATTGATTCTTTTTATTGGGAATATAGGTTTTACGTGGCTGAAGTCCTTCTTGCTCTAGAGTACTTGCACATGCTTGGAATCATTTACAGAGACCTTAAACCAGAGAATGTTTTGGTTCGAGAAGATGGCCATATAATGCTTTCTGATTTTGACCTCTCCTTGAGGTGTGCCGTGAGCCCAACTCTAGTTAGATCTTCAAATTCAAGCTTAGAGTGCAAGAGCTCATCATACTGTGTCCAGCCTGCTTGTATTGAGCCATCTTGTGTCGTACAGCCTGCATGTATACAACCTTCATGTTTTACACCACGTTTTCTAAGCAAGAACAAGAAAGAAAAGAAGTCCAAACAAAAGACAGAAACATATAACCAAGTGAACCGGCCTCTTCCAGAACTCCTTGCTGAACCAACGAGTGCTCGATCAATGTCTTTTGTGGGAACACATGAGTACCTAGCTCCAGAAATTATAAAGGGTGAAGGACACGGCAGTGCT</genome_strand>
        <mrna_strand>TGGAGATTTGCATGCACTTAGGCAAAAGCAGCCAGGAAAATTCTTCCCGGAGCATGCTGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTACGTGGCTGAAGTCCTTCTTGCTCTAGAGTACTTGCACATGCTTGGAATCATTTACAGAGACCTTAAACCAGAGAATGTTTTGGTTCGAGAAGATGGCCATATAATGCTTTCTGATTTTGACCTCTCCTTGAGGTGTGCCGTGAGCCCAACTCTAGTTAGATCTTCAAATTCAAGCTTAGAGTGCAAGAGCTCATCATATTGTGTCCAGCCTGCTTGTATTGAGCCATCTTGTGTCGTACAGCCTGCATGTATCCAACCTTCATGTTTTACACCGCGTTTTCTAAGCAAGAACAAGAAAGAAAAGAAGTCCAAACAAAAGACTGAAACATATAACCAAGTGAACCGGCCTCTTCCGGAACTCCTTGCTGAACCAACGAGTGCTCGATCAATGTCTTTTGTGGGAACACATGAGTACCTAGCTCCAGAAATTATAAAGGGTGAAGGACACGGCAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343468" ref_strand="+" ref_description="SGN-E343468 [cTOF-19-C9]">
      <seq>taagctctattctatttcatttgtttgttgtgagttttgtttgattgattcatttactctgtttgtatccaaatataataattagtcactcactctttttattgttacgatcggatctgaaaaagggagaggacccagaaagaaaaaggtgcaaagctgttaccctttttaagtggaaagggtctcaataatcatggcacatcattcatttttctccatttgataatcagtgtttataccaaaaaattacaatggagtctcttgttgatggaatcagttccttgccgaacgttcacaattcattcgctgcggttgagtgcaatacatctttggcctccaagataagtcatcctcctttgatgaaacaatccgaaaacaaagaggcatctatctcatatccaatagcgatggaccttggttccaccgtagctcatactcaaactggatcagtgactggttcaaagcattttaaagcaaatgaagatactgtaaatcaatcagcagaaggttgttcaagagaacaggttttggctttggaaactgaatcatctatcaaggatttacatcatgtttcgaaaaatggtacttcaaacgatgatttgaatgccactgccaaagactcaagaatcacctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="66311" stop="64650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66011" g_stop="65782" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65781" i_stop="65356" i_length="426">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.257" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65355" g_stop="64950" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="636" r_length="406" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E343468" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66011" e_stop="65782"/>
          <exon e_start="65355" e_stop="64950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCTCTATTCTATTTCATTTGTTTGTTGTGAGTTTTGTTTGATTGATTCATTTACTCTGTTTGTATCCAAATATAATAATTAGTCACTCACTCTTTTTATTGTTACGATCGGATCTGAAAAAGGGAGAGGACCCAGAAAGAAAAAGGTGCAAAGCTGTTACCCTTTTTAAGTGGAAAGGGTCTCAATAATCATGGCACATCATTCATTTTTCTCCATTTGATAATCAGGTGATTTCAACAACCTATTACTCTCTCTGTCCACTTTTTTTTTTTTTGATTTATTTGTGGATATACATCTTTTCATTGATCCTTTTGGTGGAATTCTATGATCATTTAATTCTGTGATTTTACTGCAATTCTATGTAAAGTTTTGTAATCAATGCTACATTATGAGATGACCGAATCAATTTATGGTAAAATTATTCAAAATTTAGTTGAAAATTGTGAAATTTGAAAAAAAAAGTATTTAATTTTGTTTTCAAAATGGAAATTGGAGTTATATATGACCATGATATTGGTATTTTTCAAAAGTTGAATTTCGGATTTAAAGCCAAAAATGATCTCCAGAATTCAACTCCGGGAAAGAGTAAAAAGTATTCATGGTCAAACTGTTAAGTAGCTAATTTTTCTTCACTTTTAATTGTGTAATGACAGTGTTTATACCAAAAAATTACAATGGAGTCTCTTGTTGATGGAATCAGTTCCTTGCCGAACGTTCACAATTCATTCGCTGCGGTTGAGTGCAATACATCTTTGGCCTCCAAGATAAGTCATCCTCCTTTGATGAAACAATCCGAAAACAAAGAGGCATCTATCTCATATCCAATAGCGATGGACCTTGGTTCCACCGTAGCTCATACTCAAACTGGATCAGTGACTGGTTCAAAGCATTTTAAAGCAAATGAAGATACTGTAAATCAATCAGCAGAAGGTTGTTCAGGAGAACAGGTTTTGGCTTTGGAAACTGAATCATCTATCAAGGATTTACATCATGTTTCGAAAAATGGTACTTCAAACGATGATTTGAATGCGACTGCCAAAGACTCAGGAATCACCTACT</genome_strand>
        <mrna_strand>TAAGCTCTATTCTATTTCATTTGTTTGTTGTGAGTTTTGTTTGATTGATTCATTTACTCTGTTTGTATCCAAATATAATAATTAGTCACTCACTCTTTTTATTGTTACGATCGGATCTGAAAAAGGGAGAGGACCCAGAAAGAAAAAGGTGCAAAGCTGTTACCCTTTTTAAGTGGAAAGGGTCTCAATAATCATGGCACATCATTCATTTTTCTCCATTTGATAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATACCAAAAAATTACAATGGAGTCTCTTGTTGATGGAATCAGTTCCTTGCCGAACGTTCACAATTCATTCGCTGCGGTTGAGTGCAATACATCTTTGGCCTCCAAGATAAGTCATCCTCCTTTGATGAAACAATCCGAAAACAAAGAGGCATCTATCTCATATCCAATAGCGATGGACCTTGGTTCCACCGTAGCTCATACTCAAACTGGATCAGTGACTGGTTCAAAGCATTTTAAAGCAAATGAAGATACTGTAAATCAATCAGCAGAAGGTTGTTCAAGAGAACAGGTTTTGGCTTTGGAAACTGAATCATCTATCAAGGATTTACATCATGTTTCGAAAAATGGTACTTCAAACGATGATTTGAATGCCACTGCCAAAGACTCAAGAATCACCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303055" ref_strand="+" ref_description="SGN-E303055 [cLEW-26-F3]">
      <seq>aaatataataattagtcactcactctttttattgttacgatcggatctgaaaaagggagaggacccagaaagaaaaaggtgcaaagctgttaccctttttaagtggaaagggtctcaataatcatggcacatcattcatttttctccatttgataatcagagtttataccaaaaaattacaatggagtctcttgttgatggaatcagttccttgccgaacgttcacaattcattcgctgcggctgagtgcaatacatctttggcctccaagataagtcatcctcctttgatgaaacaatccgaaaacaaagaggcatctatctcatatccaatagcgatggaccttggttccaccgtagctcatactcaaactggatcagtgactggttcaaagcattttaaagcaaatgaagatactgtaaatcaatcagcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="66241" stop="64781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65941" g_stop="65782" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65781" i_stop="65356" i_length="426">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.257" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65355" g_stop="65081" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="435" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E303055" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65941" e_stop="65782"/>
          <exon e_start="65355" e_stop="65081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATAATAATTAGTCACTCACTCTTTTTATTGTTACGATCGGATCTGAAAAAGGGAGAGGACCCAGAAAGAAAAAGGTGCAAAGCTGTTACCCTTTTTAAGTGGAAAGGGTCTCAATAATCATGGCACATCATTCATTTTTCTCCATTTGATAATCAGGTGATTTCAACAACCTATTACTCTCTCTGTCCACTTTTTTTTTTTTTGATTTATTTGTGGATATACATCTTTTCATTGATCCTTTTGGTGGAATTCTATGATCATTTAATTCTGTGATTTTACTGCAATTCTATGTAAAGTTTTGTAATCAATGCTACATTATGAGATGACCGAATCAATTTATGGTAAAATTATTCAAAATTTAGTTGAAAATTGTGAAATTTGAAAAAAAAAGTATTTAATTTTGTTTTCAAAATGGAAATTGGAGTTATATATGACCATGATATTGGTATTTTTCAAAAGTTGAATTTCGGATTTAAAGCCAAAAATGATCTCCAGAATTCAACTCCGGGAAAGAGTAAAAAGTATTCATGGTCAAACTGTTAAGTAGCTAATTTTTCTTCACTTTTAATTGTGTAATGACAGTGTTTATACCAAAAAATTACAATGGAGTCTCTTGTTGATGGAATCAGTTCCTTGCCGAACGTTCACAATTCATTCGCTGCGGTTGAGTGCAATACATCTTTGGCCTCCAAGATAAGTCATCCTCCTTTGATGAAACAATCCGAAAACAAAGAGGCATCTATCTCATATCCAATAGCGATGGACCTTGGTTCCACCGTAGCTCATACTCAAACTGGATCAGTGACTGGTTCAAAGCATTTTAAAGCAAATGAAGATACTGTAAATCAATCAGCAGA</genome_strand>
        <mrna_strand>AAATATAATAATTAGTCACTCACTCTTTTTATTGTTACGATCGGATCTGAAAAAGGGAGAGGACCCAGAAAGAAAAAGGTGCAAAGCTGTTACCCTTTTTAAGTGGAAAGGGTCTCAATAATCATGGCACATCATTCATTTTTCTCCATTTGATAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATACCAAAAAATTACAATGGAGTCTCTTGTTGATGGAATCAGTTCCTTGCCGAACGTTCACAATTCATTCGCTGCGGCTGAGTGCAATACATCTTTGGCCTCCAAGATAAGTCATCCTCCTTTGATGAAACAATCCGAAAACAAAGAGGCATCTATCTCATATCCAATAGCGATGGACCTTGGTTCCACCGTAGCTCATACTCAAACTGGATCAGTGACTGGTTCAAAGCATTTTAAAGCAAATGAAGATACTGTAAATCAATCAGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280111" ref_strand="-" ref_description="SGN-E280111 [cLEL-7-P20](-)">
      <seq>gcacgagggaaatggctctggtttctaacactaactcattcttaaagtcacagaggcaccaagtttactgcagaaagaaggagaaagataagagtcaaaatccccaaccctataaagtcattgaaatttcaccccctcccaagaaccttggcatacgttgcctcccctcgaacttgcagtgtggagaaagtgtaaccatcgaaggccgagcttacaccatttcagctgtaactcatcgttatcagcttcgtaaagggaaatacgagcctagtgagaagaggcttgatgtgttgtctactggaagatacatcttaaatttgtacttagaaaatttgctagaacaatcttgactatgatgtagattactccacttttcccttcatctttatgtatacattatgaaaatacaacttcattcaattgccctgtgtcaaatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="73754" stop="68860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73454" g_stop="73408" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73407" i_stop="73324" i_length="84">
            <donor d_prob="0.997" d_score="0.91"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73323" g_stop="73201" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="170" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73200" i_stop="69428" i_length="3773">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69427" g_stop="69160" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="439" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="455"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E280111" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280111" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73454" e_stop="73408"/>
          <exon e_start="73323" e_stop="73201"/>
          <exon e_start="69427" e_stop="69160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAAGGAAATGGCTCTGGTTTCTAACACTAACTCATTCTTAAAGGTACGAATAGAACTCTGCAATCTCCCTCTTTTTGTTGTTGTTAAGCGTGTGAGTGGGTTTTTGATACTATTAGTAAAATTGCAGTCACAGAGGCACCAAGTTTACTGCAGAAAGAAGGAGAAAGATAAGAGTCAAAATCCCCAACCCTATAAAGTCATTGAAATTTCACCCCCTCCCAAGAACCTTGGCATACGTTGCCTCCCCTCGGTAAGCATCATTTTGTTTTTGTGTTTCTGTTTGATATATAATGCTTATGTGTCTCGAATGCTCAGTTGATTGATTGATTAATTGGTGTTATGATTATTATGTTTACGCTGATGCTCCTTTTCTTGCAATCGCTGTTTTTTTAATTGTTTGAATATACTTAAAAAGCCAAATGCCCCATTTGTGAGTTGTGAGATTATACACGGTATGTTGTTGTTGTAGTTGAAAGGCCATATACCATCTTACTTTTACTGGGAAGATTAGAAAAGAGCTTTCTTTACATTGGAATTATTGTAACTTGATTGGATTAGAAATGTGAAGAGTAATTCATTTGGGGTTTAATGTATTTTATGTTCAATATTGCTGGTTCCAATTCATTCTGTATGAAGTTTACAAACTTGGTTGATTGGCTTTTGTTGAATGTCTTACGTTTGTTTTATGGCATTCTTATGGTCACATTTTAGGATTAGTTCATGTTCCTTATACGTTTATATGGATGTTAACATCCTCAACTCCAAATTAGTTAGTGTCAGCTTTATGTACCCGTGAATACATTAGCTAAGAGAAGTGTCAACTACATGAATCCTCTATTTGGGTTGATTTCCTTGCAAATACCTGTACTGTGGTTGGAGCAAATATTGTGCTAGTGTCCCCACAGGATTTGGTTGGTTTGATCTAGACGGTAGTTGTTCCTCATAAGTCATAGCATATGAGCTACTCTAGAATTAAGGATAGTAGTTTGGGAACTCTTTGGTATTAACTGTGCTTGTAGTATTGCTTACAAAGAACCAAAACTAAGAGGGAACAATTTAAAGTGAATATCTGTTTTCTTGCTGGATGCTGAGTAATGGGTGAATTTCCATGCATGAGATAGAAAAAGGGCAGATGTTTGAAGGCACACAAGTTGGTTTCCTGTGATAGTGTCTCACATTCCATACCTGCTTGAATATAGACGCTGGTCTATTGATGGCAAATGGTTTTATGTGAGATGTGTTAGAATTAGATGGCTTCACATATGTTAGACCTGTATAAATGACTAAATGTGTCCAAAACTGCAGTTCTCTGTTATTTATTAATAAGTTGATTGTAACTTGGTCGAAGTCTGTGACTCCTACAACTTGCCAATACTAGACTTATGTATAAATCTCTTTTGAGTATTCTTTGTTTTGCATGAATTTCTGAGATATCTTCGCAAAGCACTCAACAACGTTATGGTATTCTACTATTCATGCCAACCATCTACGATTTCCTTTGCCCAGAACTTGACATGATTCAGATCACAGTTGTGTATTCATGCCAATCTTTTACAGTTCCCTTCACCTAAAACTTGGCCTGATTTAGTTCACAGTCATCAAATTGACCATGTTTTGATCTCATTTTCAACATGTTTTTTGCAACTTTCCAGAATAAGATGTATATAAAAACGGCAGATACCAACAGTTCAATACAATTTGTAAGAACGAGATGATGTTCAGTCTTTATTTTCAAAAATCATGTTCAAAGAAAAAATTGTTACTTTTCGAGAAGTTAATTGGTCAATTTTTGGAATAAAGGGATATTAAAATTACTATAGAAGATATATGGAAAAGCTTCTTTCCTTCCTTCTAATTCATAATTTCCTTTTGTAAGTATTGCAATTTGAGAAATAGCACAGAACAGAACACAATACTACAGAGTTAGAAAATAGAGAAAGCAGTATATTGTAGTAGAGTCAAGTGAGTTGTGAACTGTTATCTTTGTCCAAAAATGTTAAATGAGTTGTGGACTAGTGCAGCCACTTAAGCAGAGGAGTGGAGCTTTCCACTGATAGAGAAGTGTAAAATTTGTGGTGAAACAGCACTGGCAGGATATGTAAAGAATTGCTGACAAGGGTTACTCGAGTAAAGTCACTAATCTAATGATTTGTCACAGTAAAGTTCACTTAACCATGCGGTCTCAGGTTCAATTTCGGGTGGAGACAAAAAACACGTGGTGATTTCTTCCCATCCATCCAAGCCTTGGTGGATGGAGTTACCCGTAACCTGTGCTAGTGCTGGTGGAAGCAGCAGGTAACTCGTGGAAGTAACCGAGCTAAAGTTGATCCGAATACCCCGGTTATAAAATAACAAAACAAAAAAGTAGTTTTGTGACTTTTGTGTTACAAATAGTTAGTTTAGTGACTTTACCTTAACAAAAATAGTTTTCTGACTTGAGTGTTATGAAGAGTAAGTTAGTAATGGTAGGTGAAAGTAACCCGATTCGTTTGTTGTTAAAAAGGTAAAGTTAGGCTGTTACTTTATTCAAGGGCCCACAGTTAGCAAATTTTTGCTTTAGCTCTAGATCATAGAACTGAAAGATAGATGCCTGATATGCTTGCCTTCCAGTGCTAGGGTCATTGTGTCTGCATTAGCACACTTGCCTAAAGCATTTTTACTTTGTTCAAGCCTTGACGTGTTACTAGCTGATGATATTTCTGTTTAGGATGTGAAGGCTGAAGCTTCTTTAGTTCTATTATTGATCTGTCTGTTCATCTGCTGGCTTCTTTTGGGCCCTTTAGCTTGTCCTTCATTCAGAGCCAGTCATAGGAAGCTGTATATGATAGGTGTGTGTCATAGGAAGCTGTCTATGATAGGTGTGTGTCAGAACAATTATTCTCCTTAACTTTTTCCCTGAATCAAGTTTCAGAATGATAATGATGGCATCATAATTATTCCCATGACTGAACGAATCCTATGGGAGAACTAGGGAAGGAAGCAATATGATATTGTTCCTTAATGAAGCTCCAATTTTGGAAGGTTGAATGGCCCGGGTTTGGAGAGGGGGGGGGGGGGAGAGGGGAGGAGCGAACCATGTATCCTGCACTAAGCACAAACAGGAAGAAGTCCCATCAAAGGCTAGGTCATATGTGTGATGTGCAAGGCGAAGGTAAATGACACTAAGAGGGATGATCTTCCTATTTCTTTTCGCTAGAAGCAAATTTTGAGCTCTGAGGTTCCTTTTTGAAGATGAACAAACCTTTATTATAAAAGATTAGAGGTGTTCCCTATTGTTGATAAACTTATTTACCTTATAAAAAAAATACAAACCTCTATTATCATTCATGTTCGAATTGGCTGTACTTATTCTGTTCTTGCAGAGAACAGAAGAAATAAATCACTTGGTTTGTCCCTTTGGGGACATCTGATAAAACTGTAAATATATCACAGGTTCCAATGGTTCACCGTAAAACATAAAAGTGATTAGTAGCTCTGAATTTTTAACTGGCTGAATGTAATATCATCAAGCTCTTTGTGCATTTAAATTTCATGATCCTGCTTACTTGTGAACTACTTTTATTTGTTATTTTCTACCTTTTTGGTTCACCCAGAAAGATGAATGTAGAAACATAGCTCATCTGTCAGAAAATACAGTCAGTAAGAAGTGATTTACCTGTTCAGGCAACCACGATTCTATTATTCATGGTCTTTATTGGCAGTTTCATTAAGACTTAGAACTACTCATAAAGCTTGTGTTTTTCGTGTTCCAATGTAATACTCACATCTTAGCTTGACGTGAAACTAAGCTAGCCACACACACTGCATCAGATGCTTTTCATATATCCAACATTCATGCCATACAAAAGACATATGACCTTTCTGTCATGTTTCCAATAATGCTTCACTAATTCATTGAAACTGGCTACATGCATAGGGCCTACATAAGATTTTTGAATTGACAGACGTCCAACAATGCTTTTCGCAGTTGGGGTATAGTGTTTTATGGTGTCTGGTCTAATAGAAAGTTAATTTCAATGACAGAACTTGCAGTGTGGAGAAAGTGTAACCATCGAAGGCCGAGCTTACACCATTTCAGCTGTAACTCATCGTTATCAGCTTCGTAAAGGGAAATACGAGCCTAGTGAGAAGAGGCTTGATGTGTTGTCTACTGGAAGATACATCTTAAATTTGTACTTAGAAAATTTGCTAGAACAATCTTGACTATGATGTAGATTACTCCACTTTTCCCTTCATCTTTATGTATACATTATGAAAATACAACTTCATTCAATTG-CCTGTGTCAAATGAA</genome_strand>
        <mrna_strand>GCACGAGGGAAATGGCTCTGGTTTCTAACACTAACTCATTCTTAAAG....................................................................................TCACAGAGGCACCAAGTTTACTGCAGAAAGAAGGAGAAAGATAAGAGTCAAAATCCCCAACCCTATAAAGTCATTGAAATTTCACCCCCTCCCAAGAACCTTGGCATACGTTGCCTCCCCTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGCAGTGTGGAGAAAGTGTAACCATCGAAGGCCGAGCTTACACCATTTCAGCTGTAACTCATCGTTATCAGCTTCGTAAAGGGAAATACGAGCCTAGTGAGAAGAGGCTTGATGTGTTGTCTACTGGAAGATACATCTTAAATTTGTACTTAGAAAATTTGCTAGAACAATCTTGACTATGATGTAGATTACTCCACTTTTCCCTTCATCTTTATGTATACATTATGAAAATACAACTTCATTCAATTGCCCTGTGTCAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745398" ref_strand="+" ref_description="SGN-E745398 [GI|47105680]">
      <seq>gaatccgaacatactctaatcgaacgttcccctatcaaactatctagggttttggtatataaaagcgccgacaacgtcctgtactagatcagaccgcatattttcacggtgaacctcagagctccggttccgattcattgaaaacttccttgaaaaacaccgacaaacgtcttcttctcgatggaggaacaaaatgggactgtaaatggtgttaaaatcaagctggaggaagaagaaactaatgacgaccttagaactactcccgaccatcaaaacgacgccggcgcttctcagcctcttaccggagatggtgctagtcctggaaagatttttattgggggcttggctagagagacaacttcagctcaatttgtcaagcacttcggtaaatatggtgaaattattgattccgtgattatgaaggaaaggcggacaggacagccacgtgggtttggttttgtgacttatgctgacccatccgtggtagataaagtcattgaggacgaccatgttataaatggaaagcaagtggaaatcaagcgaactatacctagaggaggaggttccagctcaaaagatttcaagacaaagaagatttttgtgggcggtatcccaacaacaattagtgaagatgagttcagagacttctttttaaagtttggagaggtgaaagagcaccagatcatgcgtgaccattctactagtcgttctcgtggctttggattcatcacttttgacacagaaaaatctgtcgaggatatcttggctaatggaaacaagcttgatttttctggaacccaggtggaaatcaagaaggctgagcccaagagacctaatgcgccacaaccagccccattcaggcgtcaagggaatccaagagctgcatttggtggtggattttcagatgcttatggtggatatggagactctggttatggtgttgttgctggtcctggtcctggtccttacaggtctggtggcccctatggtggcagatccagtgcatttggtggatatagtggaggaggaatgggtggatatggagcatatggtggcggtggtgcctacggaggaggtttcagggaggaggcttcttttgggtattctagccgttatggcagtggagcctttggtagaggctacgatgttggtggtggatatggaggagcaggtgaaggttatggaggatatggtgctggtggcggtggatatggcagtggatatggtgccgctggtcttggcagtgggtatggaggagatagtgcaggaggttcaatgtatggaagcagtagaggaagctatggtggtgctggtgctggttcaggcagataccacccttatggaagatagaaagtgaaatgttgaaggtgcaaagctgaattgtttctggcttggtgattttaagcttatgaccagagatgtatactcatcaagcacttgttgagagctaaatcttgtttttttttctcttatcgaattttaattgaaaaaatattagttcagttaatatactggtgtctttgatatcgattggtttatcaaggaacacgactcatccatctgcaatcctcaagcagcattgtcaaattgatgttcaattcttttatgtgctagaggtttgcatctcttttttcttttaattagtttggactaaaccagtaaatttatggatcctagagactgtctaaatgagcaaatgatgattttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="78973" stop="74658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78674" g_stop="78352" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78351" i_stop="77240" i_length="1112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77239" g_stop="77199" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="364" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77198" i_stop="77116" i_length="83">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77115" g_stop="76952" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="528" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76951" i_stop="76831" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76830" g_stop="76728" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="631" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76727" i_stop="76633" i_length="95">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76632" g_stop="76463" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="801" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76462" i_stop="75867" i_length="596">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75866" g_stop="74961" g_length="906"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="1707" r_length="906" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1710" polyA_stop="1724"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E745398" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1707</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78674" e_stop="78352"/>
          <exon e_start="77239" e_stop="77199"/>
          <exon e_start="77115" e_stop="76952"/>
          <exon e_start="76830" e_stop="76728"/>
          <exon e_start="76632" e_stop="76463"/>
          <exon e_start="75866" e_stop="74961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCGAACATACTCTAATCGAACGTTCCCCTATCAAACTATCTAGGGTTTTGGTATATAAAAGCGCCGACAACGTCCTGTACTAGATCAGACCGCATATTTTCACGGTGAACCTCAGAGCTCCGGTTCCGATTCATTGAAAACTTCCTTGAAAAACACCGACAAACGTCTTCTTCTCGATGGAGGAACAAAATGGGACTGTAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGACGACCTTAGAACTACTCCCGACCATCAAAACGACGCCGGCGCTTCTCAGCCTCTTACCGGAGATGGTGCTAGTCCTGGGTATTTTTTTTTACTGTTTTGTCCTTTACGTTCTAGGCTGTACCCTTTTTCTTTTATCTAAGACCCATGCTGTATGTTTTTTCTTCTTTTAGTATTGTTATTAGGGCTTGTGTTTAATAGGTATTAACTTGCAAGTGTTGTTAATGTCGAGATGATTAAGACCTGAAGCTAGGTTGTAAGCTCCTTTCTCAAAGGAGGAAGGAAAACGATAAGCATAGTTATTAAATTGCTCTTAATTAAACAAGGTGAATAAATATGTTGATGATTAGGAATATAAATTTAGAGTTGAAATTTCATCATTCTGTATGAATCAGAATCAGAGTTTAAGATGCTGTTTGGGCTTGATTTTAGTTATTTTTCAGTTTCTTAGTCCTCATAACTTTTCATTGTGTTACATTTATATTTCTTACGTTTTTGCTCTCCTTCTTGGAGAGGAGTTCGTGGAGGACACAAATTAGGGTAGAAGGTTAGTATGTGCTAGTGCATTGTCTTGTTGTTTGTCCATTAATAGTAGTATTATTACTCTTGTAGTTTCTTTGCCTTTCCGATCTTTGTTACTATTTGTTGAATCTTGTACTTTGACTATTGTATTTGTTTTGTTTTAATACTCTTATTTTATCATCCGTTGTTGTTTTTGTTACTGTGTTGTTTCCCGCACTTCCGCTATTTCTTTTTTCTGTATGGCTTTGGACTGTTTTCTTGAGCTGGTGGTGTATCTGAAATAATCTCTGCATTTATGAGGTAGGGGTAAGGCTTGTATACACTCTACACTCTACGCTCTCCTCATACCCCACTTTGTGGTTGTTGCTTATCTGCAACATACCCATCGAAATTTTTTAAGTGAGCTCTGAATGTTGTTGCTTGTCTATGCCTTCCATTTTAACAACACTGTAATTTACTATCAGTGTATTGGATAAGTTTTTTAATTTGATGATTTTCTTCTGTGCCCTTTTCAATTTCTTCTGATGTGAGGTTCTTCTCGTTGAAGTTACTTATCTCAAAAAAAAAGTTAGTTGTTGGTTGGGCATGCCTCTCAGTTTTCATAGAATGTTATCCTATTAATCAACTTGCTCATGGTATTTTATTAATCAATGGATTTGGTGGCCATGCAGAAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAGGTTTGTCGAATAACATCCGCTGCTTTGATCTTCTGCCAAATTGTTTTCTTTCTTGCCTCTAATGTTGCATTGTATATCTGCAGCTCAATTTGTCAAGCACTTCGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGTTTGGTTTTGTGACTTATGCTGACCCATCCGTGGTAGATAAAGTCATTGAGGACGACCATGTTATAAATGGAAAGCAAGTAAGATTACATTAGCCTTCTATTTTATTTCATTCTTATAGCAGCTTGTGATTTCATTTCCTTTTTATTTTAGTGTGGATAGACAATTTGGGACCTCATGCTGATGTTTTGATTGTGTCAGGTGGAAATCAAGCGAACTATACCTAGAGGAGGAGGTTCCAGCTCAAAAGATTTCAAGACAAAGAAGATTTTTGTGGGCGGTATCCCAACAACAATTAGTGAAGGTTATATTTCTGTAGCTAGACTGATCACCTTGCCTTTAGTCGTTGGATTCTTTTGAAACAAGTCTTTGAGGTATTAAGTTGCATTTATATTTCAGATGAGTTCAGAGACTTCTTTTTAAAGTTTGGAGAGGTGAAAGAGCACCAGATCATGCGTGACCATTCTACTAGTCGTTCTCGTGGCTTTGGATTCATCACTTTTGACACAGAAAAATCTGTCGAGGATATCTTGGCTAATGGAAACAAGCTTGATTTTTCTGGAACCCAGGTTAGTATAGCCATAGTGTTGTCTAATTAAGGCGGTGATACTTTTTCTAGATTGTTTCATTAATCTTGTGAAGTTATCAAGCTTTTCTGCCCTTCTTCAAACATGATTTCAGTGGCAATGTTGCACTCTTAAGTATATGTGCTTCTTGTGTTTTTTTCTTTATGTTCTAGGCCTTCTGACAAATGTCCTTAATTTGATAAGGATTGAGCTTGTGTTCTTTCTCAATTTTCTTGGAAAGAATTAATGAAACTGACTGCCAAACCCAATGAAATATCAATAGTATGTATTTGGGTAGCAATGTTTCTATGTTCATTGTGACTTGGTACTGATGCATCTTTTGTCTAACTTATCATTGAGTTGAGGTGCTGAAGTTGTCTTAACTGTATTGAGGCTCAAGAAGTTGAGAATTGTTCTTGTGTATCCATACAAGCTTATTTTCTTAGTGATGATGCTCAAGTTACTATTGTTTGGAAATAATTAGTAATTGAAATGATTCTGCTAATGGTAGTTGAACATTCATCTGTTGCATGATCATGTTATTTTAAATAACCTTTTGAAGCTTGGTTAAGCTAAACAGTTCTCTACATGGCAAATAGGTGGAAATCAAGAAGGCTGAGCCCAAGAGACCTAATGCGCCACAACCAGCCCCATTCAGGCGTCAAGGGAATCCAAGAGCTGCATTTGGTGGTGGATTTTCAGATGCTTATGGTGGATATGGAGACTCTGGTTATGGTGTTGTTGCTGGTCCTGGTCCTGGTCCTTACAGGTCTGGTGGCCCCTATGGTGGCAGATCCAGTGCATTTGGTGGATATAGTGGAGGAGGAATGGGTGGATATGGAGCATATGGTGGCGGTGGTGCCTACGGAGGAGGTTTCAGGGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGGTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCCGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCAGGAGGTTCAATGTATGGAAGCAGTAGAGGAAGCTATGGTGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGAAGATAGAAAGTGAAATGTTGAAGGTGCAAAGCTGAATTGTTTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACTCATCAAGCACTTGTTGAGAGCTAAATCTTGTTTTTTTTTCTCTTATCGAATTTTAATTGAAAAAATATTAGTTCAGTTAATATACTGGTGTCTTTGATATCGATTGGTTTATCAAGGAACACGACTCATCCATCTGCAATCCTCAAGCAGCATTGTCAAATTGATGTTCAATTCTTTTATGTGCTAGAGGTTTGCATCTCTTTTTTCTTTTAATTAGTTTGGACTAAACCAGTAAATTTATGGATCCTAGAGACTGTCTAAATGAGCAAATGATGATTTT</genome_strand>
        <mrna_strand>GAATCCGAACATACTCTAATCGAACGTTCCCCTATCAAACTATCTAGGGTTTTGGTATATAAAAGCGCCGACAACGTCCTGTACTAGATCAGACCGCATATTTTCACGGTGAACCTCAGAGCTCCGGTTCCGATTCATTGAAAACTTCCTTGAAAAACACCGACAAACGTCTTCTTCTCGATGGAGGAACAAAATGGGACTGTAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGACGACCTTAGAACTACTCCCGACCATCAAAACGACGCCGGCGCTTCTCAGCCTCTTACCGGAGATGGTGCTAGTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAG...................................................................................CTCAATTTGTCAAGCACTTCGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGTTTGGTTTTGTGACTTATGCTGACCCATCCGTGGTAGATAAAGTCATTGAGGACGACCATGTTATAAATGGAAAGCAA.........................................................................................................................GTGGAAATCAAGCGAACTATACCTAGAGGAGGAGGTTCCAGCTCAAAAGATTTCAAGACAAAGAAGATTTTTGTGGGCGGTATCCCAACAACAATTAGTGAAG...............................................................................................ATGAGTTCAGAGACTTCTTTTTAAAGTTTGGAGAGGTGAAAGAGCACCAGATCATGCGTGACCATTCTACTAGTCGTTCTCGTGGCTTTGGATTCATCACTTTTGACACAGAAAAATCTGTCGAGGATATCTTGGCTAATGGAAACAAGCTTGATTTTTCTGGAACCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAATCAAGAAGGCTGAGCCCAAGAGACCTAATGCGCCACAACCAGCCCCATTCAGGCGTCAAGGGAATCCAAGAGCTGCATTTGGTGGTGGATTTTCAGATGCTTATGGTGGATATGGAGACTCTGGTTATGGTGTTGTTGCTGGTCCTGGTCCTGGTCCTTACAGGTCTGGTGGCCCCTATGGTGGCAGATCCAGTGCATTTGGTGGATATAGTGGAGGAGGAATGGGTGGATATGGAGCATATGGTGGCGGTGGTGCCTACGGAGGAGGTTTCAGGGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGGTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCCGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCAGGAGGTTCAATGTATGGAAGCAGTAGAGGAAGCTATGGTGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGAAGATAGAAAGTGAAATGTTGAAGGTGCAAAGCTGAATTGTTTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACTCATCAAGCACTTGTTGAGAGCTAAATCTTGTTTTTTTTTCTCTTATCGAATTTTAATTGAAAAAATATTAGTTCAGTTAATATACTGGTGTCTTTGATATCGATTGGTTTATCAAGGAACACGACTCATCCATCTGCAATCCTCAAGCAGCATTGTCAAATTGATGTTCAATTCTTTTATGTGCTAGAGGTTTGCATCTCTTTTTTCTTTTAATTAGTTTGGACTAAACCAGTAAATTTATGGATCCTAGAGACTGTCTAAATGAGCAAATGATGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433879" ref_strand="+" ref_description="SGN-E433879 [STM-59-K5]">
      <seq>caaatcatttttatcaaagacaacagtatattatctgaactaatattttaccaattaaaattcgacaagagaaaaaaaaaacaagatttagctctcaacaagtgcttgattgagtatacatctctggtcataagcttaaaatcaccaagccagagacaattcagctttgcaccttaaacatttcactttctatctcccataagggtggtatctgcctgaaccagcaccagcaccagcaccaccatagcttcctctactacttccatacattgaacctccggcactatctcctccatacccactgccaagaccagcagcaccatatccactgccatatccaccgccaccagcagcatatcctccataaccttcacctgctcctccatatccaccaccaacatcgtagcctctaccaaaggctccactgccataacggctagaatacccaaaagaagcctcctccctgaagcctcctccgtaggcaccaccgccaccatatgctccatatccacccattcctgcaccactatatccaccaaatgcactggatctgccaccataggggccaccagacctataaggaccagcaccagcaccaataccataaccagagtctccatatccaccataagcatctgataatccaccaccaaatgcagctcttggattcccttgacgcctgaatggggctggttgtggcgcattaggtctcttgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="74842" stop="76147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75130" g_stop="75847" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E433879" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75130" e_stop="75847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCAATCGATATCAAAGACACCAGTATATTAACTGAACTAATATTTTTTCAATTAAAATTCGATAAGAG-AAAAAAAAACAAGATTTAGCTCTCAACAAGTGCTTGA-TGAGTATACATCTCTGGTCATAAGCTTAAAATCACCAAGCCAGAAACAATTCAGCTTTGCACCTTCAACATTTCACTTTCTATCTTCCATAAGGGTGGTATCTGCCTG----A--ACCAGCACCAGCACCACCATAGCTTCCTCTACTGCTTCCATACATTGAACCTCCTGCACTATCTCCTCCATACCCACTGCCAAGACCAGCGGCACCATATCCACTGCCATATCCACCGCCACCAGCACCATATCCTCCATAACCTTCACCTGCTCCTCCATATCCACCACCAACATCGTAGCCTCTACCAAAGGCTCCACTGCCATAACGGCTAGAATACCCAAAAGAAGCCTCCTCCCTGAAACCTCCTCCGTAGGCACCACCGCCACCATATGCTCCATATCCACCCATTCCTCCTCCACTATATCCACCAAATGCACTGGATCTGCCACCATAGGGGCCACCAGACCTGTAAGGACCAGGACCAGGACCAGCAACAACACCATAACCAGAGTCTCCATATCCACCATAAGCATCTGAAAATCCACCACCAAATGCAGCTCTTGGATTCCCTTGACGCCTGAATGGGGCTGGTTGTGGCGCATTAGGTCTCTTGGGCT</genome_strand>
        <mrna_strand>CAAATCA-TTTTTATCAAAGACAACAGTATATTATCTGAACTAATATTTTACCAATTAAAATTCGACAAGAGAAAAAAAAAACAAGATTTAGCTCTCAACAAGTGCTTGATTGAGTATACATCTCTGGTCATAAGCTTAAAATCACCAAGCCAGAGACAATTCAGCTTTGCACCTTAAACATTTCACTTTCTATCTCCCATAAGGGTGGTATCTGCCTGAACCAGCACCAGCACCAGCACCACCATAGCTTCCTCTACTACTTCCATACATTGAACCTCCGGCACTATCTCCTCCATACCCACTGCCAAGACCAGCAGCACCATATCCACTGCCATATCCACCGCCACCAGCAGCATATCCTCCATAACCTTCACCTGCTCCTCCATATCCACCACCAACATCGTAGCCTCTACCAAAGGCTCCACTGCCATAACGGCTAGAATACCCAAAAGAAGCCTCCTCCCTGAAGCCTCCTCCGTAGGCACCACCGCCACCATATGCTCCATATCCACCCATTCCTGCACCACTATATCCACCAAATGCACTGGATCTGCCACCATAGGGGCCACCAGACCTATAAGGACCA-G--C---ACCAGCACCAATACCATAACCAGAGTCTCCATATCCACCATAAGCATCTGATAATCCACCACCAAATGCAGCTCTTGGATTCCCTTGACGCCTGAATGGGGCTGGTTGTGGCGCATTAGGTCTCTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422422" ref_strand="-" ref_description="SGN-E422422 [STM-40-M2]">
      <seq>ggaggaggcttcttttgggtattctagccgttatggcagtggagcctttggtagaggctacgatgttggtggtggatatggaggagcaggtgaaggttatggaggatatgctgctggtggcggtggatatggcagtggatatggtgctgctggtcttggcagtgggtatggaggagatagtgccggaggttcaatctatggaagtagtagaggaagctatggtggtgctggtgctggtgctggttcaggcagataccacccttatgggagatagaaagtgaaatgtttaaggtgcaaagctgaattgtctctggcttggtgattttaagcttatggccagagatgtatactcaatcaagcacttgttgagagctaaatcttgttttttttttctcttgtcgaattttaattggtaaaatattagttcagttaatatactgttgtctttgataacgattggtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="75885" stop="74820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75585" g_stop="75131" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="482"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E422422" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422422" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75585" e_stop="75131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGGTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCCGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCAGGAGGTTCAATGTATGGAAGCAGTAGAGGAAGCTA---T-G-G-TGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGAAGATAGAAAGTGAAATGTTGAAGGTGCAAAGCTGAATTGTTTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACTC-ATCAAGCACTTGTTGAGAGCTAAATCTTG-TTTTTTTTTCTCTTATCGAATTTTAATTGAAAAAATATTAGTTCAGTTAATATACTGGTGTCTTTGATATCGATTGGTTT</genome_strand>
        <mrna_strand>GGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGCTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCTGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCCGGAGGTTCAATCTATGGAAGTAGTAGAGGAAGCTATGGTGGTGCTGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGGAGATAGAAAGTGAAATGTTTAAGGTGCAAAGCTGAATTGTCTCTGGCTTGGTGATTTTAAGCTTATGGCCAGAGATGTATACTCAATCAAGCACTTGTTGAGAGCTAAATCTTGTTTTTTTTTTCTCTTGTCGAATTTTAATTGGTAAAATATTAGTTCAGTTAATATACTGTTGTCTTTGATAACGATTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448346" ref_strand="+" ref_description="SGN-E448346 [cSTS-2-P9]">
      <seq>ggaggaggcttcttttgggtattctagccgttatggcagtggagcctttggtagaggctacgatgttggtggtggatatggaggagcaggtgaaggttatggaggatatgctgctggtggcggtggatatggcagtggatatggtgctgctggtcttggcagtgggtatggaggagatagtgccggaggttcaatgtatggaagtagtagaggaagctatggtggtgctggtgctggtgctggttcaggcagataccacccttatgggagatagaaagtgaaatgtttaaggtgcaaagctgaattgtctctggcttggtgattttaagcttatgaccagagatgtatactcaatcaagcacttgttgagagctaaatcttgttttttttttctcttgtcgaattttaattggtaaaatattagttcagttaatatactgttgtctttgatatcgattggtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="75885" stop="74820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75585" g_stop="75131" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="482"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E448346" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75585" e_stop="75131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGGTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCCGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCAGGAGGTTCAATGTATGGAAGCAGTAGAGGAAGCTA---T-G-G-TGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGAAGATAGAAAGTGAAATGTTGAAGGTGCAAAGCTGAATTGTTTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACTC-ATCAAGCACTTGTTGAGAGCTAAATCTTG-TTTTTTTTTCTCTTATCGAATTTTAATTGAAAAAATATTAGTTCAGTTAATATACTGGTGTCTTTGATATCGATTGGTTT</genome_strand>
        <mrna_strand>GGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGCTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCTGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCCGGAGGTTCAATGTATGGAAGTAGTAGAGGAAGCTATGGTGGTGCTGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGGAGATAGAAAGTGAAATGTTTAAGGTGCAAAGCTGAATTGTCTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACTCAATCAAGCACTTGTTGAGAGCTAAATCTTGTTTTTTTTTTCTCTTGTCGAATTTTAATTGGTAAAATATTAGTTCAGTTAATATACTGTTGTCTTTGATATCGATTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552601" ref_strand="+" ref_description="SGN-E552601 [cTSB-4-H10]">
      <seq>ggtccttacaggtctggtggcccctatggtggcagatccagtgcatttggtggatatagtggaggaggaatgggtggatatggagcatatggtggcggtggtgcctacggaggaggtttcagggaggaggcttcttttgggtattctagccgttatggcagtggagcctttggtagaggctacgatgttggtggtggatatggaggagcaggtgaaggttatggaggatatggtgctggtggcggtggatatggcagtggatatggtgccgctggtcttggcagtgggtatggaggagatagtgcaggaggttcaatgtatggaagcagtagaggaagctatggtggtgctggtgctggttcaggcagataccacccttatggaagatagaaagtgaaatgttgaaggtgcaaagctgaattgtttctggcttggtgattttaagcttatgaccagagatgtatactcatcaagcacttgttgagagctaaatcttgtttttttttctcttatcgaattttaattgaaaaaatattagttcagttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="76007" stop="74857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75707" g_stop="75162" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="569"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E552601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75707" e_stop="75162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCTTACAGGTCTGGTGGCCCCTATGGTGGCAGATCCAGTGCATTTGGTGGATATAGTGGAGGAGGAATGGGTGGATATGGAGCATATGGTGGCGGTGGTGCCTACGGAGGAGGTTTCAGGGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGGTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCCGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCAGGAGGTTCAATGTATGGAAGCAGTAGAGGAAGCTATGGTGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGAAGATAGAAAGTGAAATGTTGAAGGTGCAAAGCTGAATTGTTTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACTCATCAAGCACTTGTTGAGAGCTAAATCTTGTTTTTTTTTCTCTTATCGAATTTTAATTGAAAAAATATTAGTTCAGTTA</genome_strand>
        <mrna_strand>GGTCCTTACAGGTCTGGTGGCCCCTATGGTGGCAGATCCAGTGCATTTGGTGGATATAGTGGAGGAGGAATGGGTGGATATGGAGCATATGGTGGCGGTGGTGCCTACGGAGGAGGTTTCAGGGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGGTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCCGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCAGGAGGTTCAATGTATGGAAGCAGTAGAGGAAGCTATGGTGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGAAGATAGAAAGTGAAATGTTGAAGGTGCAAAGCTGAATTGTTTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACTCATCAAGCACTTGTTGAGAGCTAAATCTTGTTTTTTTTTCTCTTATCGAATTTTAATTGAAAAAATATTAGTTCAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553272" ref_strand="+" ref_description="SGN-E553272 [cTSB-3-O11]">
      <seq>ggtccttacaggtctggtggcccctatggtggcagatccagtgcatttggtggatatagtggaggaggaatgggtggatatggagcatatggtggcggtggtgcctacggaggaggtttcagggaggaggcttcttttgggtattctagccgttatggcagtggagcctttggtagaggctacgatgttggtggtggatatggaggagcaggtgaaggttatggaggatatggtgctggtggcggtggatatggcagtggatatggtgccgctggtcttggcagtgggtatggaggagatagtgcaggaggttcaatgtatggaagcagtagaggaagctatggtggtgctggtgctggttcaggcagataccacccttatggaagatagaaagtgaaatgttgaaggtgcaaagctgaattgtttctggcttggtgattttaagcttatgaccagagatgtatactcatcaagcacttgttgagagctaaatcttgtttttttttctcttatcgaattttaattgaaaaaatattagttcagttaaaaaaaaaaaacaacaaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="76007" stop="74857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75707" g_stop="75162" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="547" polyA_stop="560"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E553272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75707" e_stop="75162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCTTACAGGTCTGGTGGCCCCTATGGTGGCAGATCCAGTGCATTTGGTGGATATAGTGGAGGAGGAATGGGTGGATATGGAGCATATGGTGGCGGTGGTGCCTACGGAGGAGGTTTCAGGGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGGTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCCGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCAGGAGGTTCAATGTATGGAAGCAGTAGAGGAAGCTATGGTGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGAAGATAGAAAGTGAAATGTTGAAGGTGCAAAGCTGAATTGTTTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACTCATCAAGCACTTGTTGAGAGCTAAATCTTGTTTTTTTTTCTCTTATCGAATTTTAATTGAAAAAATATTAGTTCAGTTA</genome_strand>
        <mrna_strand>GGTCCTTACAGGTCTGGTGGCCCCTATGGTGGCAGATCCAGTGCATTTGGTGGATATAGTGGAGGAGGAATGGGTGGATATGGAGCATATGGTGGCGGTGGTGCCTACGGAGGAGGTTTCAGGGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGGTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCCGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCAGGAGGTTCAATGTATGGAAGCAGTAGAGGAAGCTATGGTGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGAAGATAGAAAGTGAAATGTTGAAGGTGCAAAGCTGAATTGTTTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACTCATCAAGCACTTGTTGAGAGCTAAATCTTGTTTTTTTTTCTCTTATCGAATTTTAATTGAAAAAATATTAGTTCAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E562329" ref_strand="+" ref_description="SGN-E562329 [769]">
      <seq>ttggtggtggatatggaggagcaggtgaaggttatggaggatatgctgctggtggcggtggatatggcagtggatatggtgctgctggtcttggcagtgggtatggaggagatagtgccggaggttcgatgtatggaagtagtagaggaagctatggtggtgctggtgctggtgctggttcaggcagataccacccttatgggagatagaaagtaaaatgttgaaggtgcaaagctgaattgtctctggcttggtgattttaagcttatgactagagatgtatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="75820" stop="74941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75520" g_stop="75241" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E562329" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75520" e_stop="75241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGGTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCCGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCAGGAGGTTCAATGTATGGAAGCAGTAGAGGAAGCTA---T-G-G-TGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGAAGATAGAAAGTGAAATGTTGAAGGTGCAAAGCTGAATTGTTTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACT</genome_strand>
        <mrna_strand>TTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGCTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCTGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCCGGAGGTTCGATGTATGGAAGTAGTAGAGGAAGCTATGGTGGTGCTGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGGAGATAGAAAGTAAAATGTTGAAGGTGCAAAGCTGAATTGTCTCTGGCTTGGTGATTTTAAGCTTATGACTAGAGATGTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433878" ref_strand="+" ref_description="SGN-E433878 [STM-59-K5]">
      <seq>tcacggtgaacctcagagttccagttccgattcgttgaaaactttcttgaaaagcaccgacaaacgtcttcttgtcaatggaggaacaaaatgggactgcaaatggtgttaaaatcaagctggaggaagaagaaactaatgatgacctaagaactactcccgaccatcaaaacgacaccggcgcttctcaacctcttaccggagatggtgctagtcctggaaagatttttattgggggcttggctagagagacaacttcagctcaatttgtcaagcactttggtaaatatggtgaaattattgattccgtgattatgaaggaaaggcggacaggacagccacgtgggtttggttttgtgacttatgctgacccctccgtggtagataaagtcattgaggacgaccatgttataaatggaaagcaagtggaaatcaagcgaactatacctagaggaggaggttccagctcaaaagatttcaagacgaagaagatttttgtgggcggcatcccaacaacaattagtgaagatgagttcagagacttctttttaaagtttggagaggtgaaggagcaccagatcatgcgtgaccattctactagtcgttctcgtggctttggattcatcacttttgacacagaaaaatctgttgaggatatcttggctaatggaaacaagcttgatttttctgggacccaggtggaaatcaagaaggctgagcccaagagaactaatgcgccacaaccagccccattcaggcgtcaagggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="78871" stop="75496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78571" g_stop="78352" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78351" i_stop="77240" i_length="1112">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77239" g_stop="77199" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="261" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77198" i_stop="77116" i_length="83">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77115" g_stop="76952" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="425" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76951" i_stop="76831" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76830" g_stop="76728" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="528" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76727" i_stop="76633" i_length="95">
            <donor d_prob="0.731" d_score="0.96"/>
            <acceptor a_prob="0.915" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76632" g_stop="76463" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="698" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76462" i_stop="75867" i_length="596">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75866" g_stop="75796" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="769" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E433878" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78571" e_stop="78352"/>
          <exon e_start="77239" e_stop="77199"/>
          <exon e_start="77115" e_stop="76952"/>
          <exon e_start="76830" e_stop="76728"/>
          <exon e_start="76632" e_stop="76463"/>
          <exon e_start="75866" e_stop="75796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGGTGAACCTCAGAGCTCCGGTTCCGATTCATTGAAAACTTCCTTGAAAAACACCGACAAACGTCTTCTTCTCGATGGAGGAACAAAATGGGACTGTAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGACGACCTTAGAACTACTCCCGACCATCAAAACGACGCCGGCGCTTCTCAGCCTCTTACCGGAGATGGTGCTAGTCCTGGGTATTTTTTTTTACTGTTTTGTCCTTTACGTTCTAGGCTGTACCCTTTTTCTTTTATCTAAGACCCATGCTGTATGTTTTTTCTTCTTTTAGTATTGTTATTAGGGCTTGTGTTTAATAGGTATTAACTTGCAAGTGTTGTTAATGTCGAGATGATTAAGACCTGAAGCTAGGTTGTAAGCTCCTTTCTCAAAGGAGGAAGGAAAACGATAAGCATAGTTATTAAATTGCTCTTAATTAAACAAGGTGAATAAATATGTTGATGATTAGGAATATAAATTTAGAGTTGAAATTTCATCATTCTGTATGAATCAGAATCAGAGTTTAAGATGCTGTTTGGGCTTGATTTTAGTTATTTTTCAGTTTCTTAGTCCTCATAACTTTTCATTGTGTTACATTTATATTTCTTACGTTTTTGCTCTCCTTCTTGGAGAGGAGTTCGTGGAGGACACAAATTAGGGTAGAAGGTTAGTATGTGCTAGTGCATTGTCTTGTTGTTTGTCCATTAATAGTAGTATTATTACTCTTGTAGTTTCTTTGCCTTTCCGATCTTTGTTACTATTTGTTGAATCTTGTACTTTGACTATTGTATTTGTTTTGTTTTAATACTCTTATTTTATCATCCGTTGTTGTTTTTGTTACTGTGTTGTTTCCCGCACTTCCGCTATTTCTTTTTTCTGTATGGCTTTGGACTGTTTTCTTGAGCTGGTGGTGTATCTGAAATAATCTCTGCATTTATGAGGTAGGGGTAAGGCTTGTATACACTCTACACTCTACGCTCTCCTCATACCCCACTTTGTGGTTGTTGCTTATCTGCAACATACCCATCGAAATTTTTTAAGTGAGCTCTGAATGTTGTTGCTTGTCTATGCCTTCCATTTTAACAACACTGTAATTTACTATCAGTGTATTGGATAAGTTTTTTAATTTGATGATTTTCTTCTGTGCCCTTTTCAATTTCTTCTGATGTGAGGTTCTTCTCGTTGAAGTTACTTATCTCAAAAAAAAAGTTAGTTGTTGGTTGGGCATGCCTCTCAGTTTTCATAGAATGTTATCCTATTAATCAACTTGCTCATGGTATTTTATTAATCAATGGATTTGGTGGCCATGCAGAAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAGGTTTGTCGAATAACATCCGCTGCTTTGATCTTCTGCCAAATTGTTTTCTTTCTTGCCTCTAATGTTGCATTGTATATCTGCAGCTCAATTTGTCAAGCACTTCGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGTTTGGTTTTGTGACTTATGCTGACCCATCCGTGGTAGATAAAGTCATTGAGGACGACCATGTTATAAATGGAAAGCAAGTAAGATTACATTAGCCTTCTATTTTATTTCATTCTTATAGCAGCTTGTGATTTCATTTCCTTTTTATTTTAGTGTGGATAGACAATTTGGGACCTCATGCTGATGTTTTGATTGTGTCAGGTGGAAATCAAGCGAACTATACCTAGAGGAGGAGGTTCCAGCTCAAAAGATTTCAAGACAAAGAAGATTTTTGTGGGCGGTATCCCAACAACAATTAGTGAAGGTTATATTTCTGTAGCTAGACTGATCACCTTGCCTTTAGTCGTTGGATTCTTTTGAAACAAGTCTTTGAGGTATTAAGTTGCATTTATATTTCAGATGAGTTCAGAGACTTCTTTTTAAAGTTTGGAGAGGTGAAAGAGCACCAGATCATGCGTGACCATTCTACTAGTCGTTCTCGTGGCTTTGGATTCATCACTTTTGACACAGAAAAATCTGTCGAGGATATCTTGGCTAATGGAAACAAGCTTGATTTTTCTGGAACCCAGGTTAGTATAGCCATAGTGTTGTCTAATTAAGGCGGTGATACTTTTTCTAGATTGTTTCATTAATCTTGTGAAGTTATCAAGCTTTTCTGCCCTTCTTCAAACATGATTTCAGTGGCAATGTTGCACTCTTAAGTATATGTGCTTCTTGTGTTTTTTTCTTTATGTTCTAGGCCTTCTGACAAATGTCCTTAATTTGATAAGGATTGAGCTTGTGTTCTTTCTCAATTTTCTTGGAAAGAATTAATGAAACTGACTGCCAAACCCAATGAAATATCAATAGTATGTATTTGGGTAGCAATGTTTCTATGTTCATTGTGACTTGGTACTGATGCATCTTTTGTCTAACTTATCATTGAGTTGAGGTGCTGAAGTTGTCTTAACTGTATTGAGGCTCAAGAAGTTGAGAATTGTTCTTGTGTATCCATACAAGCTTATTTTCTTAGTGATGATGCTCAAGTTACTATTGTTTGGAAATAATTAGTAATTGAAATGATTCTGCTAATGGTAGTTGAACATTCATCTGTTGCATGATCATGTTATTTTAAATAACCTTTTGAAGCTTGGTTAAGCTAAACAGTTCTCTACATGGCAAATAGGTGGAAATCAAGAAGGCTGAGCCCAAGAGACCTAATGCGCCACAACCAGCCCCATTCAGGCGTCAAGGGAA</genome_strand>
        <mrna_strand>TCACGGTGAACCTCAGAGTTCCAGTTCCGATTCGTTGAAAACTTTCTTGAAAAGCACCGACAAACGTCTTCTTGTCAATGGAGGAACAAAATGGGACTGCAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGATGACCTAAGAACTACTCCCGACCATCAAAACGACACCGGCGCTTCTCAACCTCTTACCGGAGATGGTGCTAGTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAG...................................................................................CTCAATTTGTCAAGCACTTTGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGTTTGGTTTTGTGACTTATGCTGACCCCTCCGTGGTAGATAAAGTCATTGAGGACGACCATGTTATAAATGGAAAGCAA.........................................................................................................................GTGGAAATCAAGCGAACTATACCTAGAGGAGGAGGTTCCAGCTCAAAAGATTTCAAGACGAAGAAGATTTTTGTGGGCGGCATCCCAACAACAATTAGTGAAG...............................................................................................ATGAGTTCAGAGACTTCTTTTTAAAGTTTGGAGAGGTGAAGGAGCACCAGATCATGCGTGACCATTCTACTAGTCGTTCTCGTGGCTTTGGATTCATCACTTTTGACACAGAAAAATCTGTTGAGGATATCTTGGCTAATGGAAACAAGCTTGATTTTTCTGGGACCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAATCAAGAAGGCTGAGCCCAAGAGAACTAATGCGCCACAACCAGCCCCATTCAGGCGTCAAGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404344" ref_strand="+" ref_description="SGN-E404344 [PPC-13-M4]">
      <seq>tcacggtgaacctcagagttccagttccgattcgttgaaaactttcttgaaaagcaccgacaaacgtcttcttgtcaatggaggaacaaaatgggactgcaaatggtgttaaaatcaagctggaggaagaagaaactaatgatgacctaagaactactcccgaccatcaaaacgacaccggcgcttctcaacctcttaccggagatggtgctagtcctggaaagatttttattgggggcttggctagagagacaacttcagctcaatttgtcaagcactttggtaaatatggtgaaattattgattccgtgattatgaaggaaaggcggacaggacagccacgtgggtttggttttgtgacttatgctgacccctccgtggtagataaagtcattgaggacgaccatgttataaatggaaagcaagtggaaatcaagcgaactatacctagaggaggaggttccagctcaaaagatttcaagacgaagaagatttttgtgggcggcatcccaacaacaattagtgaagatgagttcagagacttctttttaaagtttggagaagtgaaggagcaccagatcatgcgtgaccattctactagtcgttctcgtggctttggaatcatcacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="78871" stop="76228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78571" g_stop="78352" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78351" i_stop="77240" i_length="1112">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77239" g_stop="77199" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="261" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77198" i_stop="77116" i_length="83">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77115" g_stop="76952" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="425" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76951" i_stop="76831" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76830" g_stop="76728" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="528" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76727" i_stop="76633" i_length="95">
            <donor d_prob="0.731" d_score="0.96"/>
            <acceptor a_prob="0.915" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76632" g_stop="76528" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="633" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E404344" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78571" e_stop="78352"/>
          <exon e_start="77239" e_stop="77199"/>
          <exon e_start="77115" e_stop="76952"/>
          <exon e_start="76830" e_stop="76728"/>
          <exon e_start="76632" e_stop="76528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGGTGAACCTCAGAGCTCCGGTTCCGATTCATTGAAAACTTCCTTGAAAAACACCGACAAACGTCTTCTTCTCGATGGAGGAACAAAATGGGACTGTAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGACGACCTTAGAACTACTCCCGACCATCAAAACGACGCCGGCGCTTCTCAGCCTCTTACCGGAGATGGTGCTAGTCCTGGGTATTTTTTTTTACTGTTTTGTCCTTTACGTTCTAGGCTGTACCCTTTTTCTTTTATCTAAGACCCATGCTGTATGTTTTTTCTTCTTTTAGTATTGTTATTAGGGCTTGTGTTTAATAGGTATTAACTTGCAAGTGTTGTTAATGTCGAGATGATTAAGACCTGAAGCTAGGTTGTAAGCTCCTTTCTCAAAGGAGGAAGGAAAACGATAAGCATAGTTATTAAATTGCTCTTAATTAAACAAGGTGAATAAATATGTTGATGATTAGGAATATAAATTTAGAGTTGAAATTTCATCATTCTGTATGAATCAGAATCAGAGTTTAAGATGCTGTTTGGGCTTGATTTTAGTTATTTTTCAGTTTCTTAGTCCTCATAACTTTTCATTGTGTTACATTTATATTTCTTACGTTTTTGCTCTCCTTCTTGGAGAGGAGTTCGTGGAGGACACAAATTAGGGTAGAAGGTTAGTATGTGCTAGTGCATTGTCTTGTTGTTTGTCCATTAATAGTAGTATTATTACTCTTGTAGTTTCTTTGCCTTTCCGATCTTTGTTACTATTTGTTGAATCTTGTACTTTGACTATTGTATTTGTTTTGTTTTAATACTCTTATTTTATCATCCGTTGTTGTTTTTGTTACTGTGTTGTTTCCCGCACTTCCGCTATTTCTTTTTTCTGTATGGCTTTGGACTGTTTTCTTGAGCTGGTGGTGTATCTGAAATAATCTCTGCATTTATGAGGTAGGGGTAAGGCTTGTATACACTCTACACTCTACGCTCTCCTCATACCCCACTTTGTGGTTGTTGCTTATCTGCAACATACCCATCGAAATTTTTTAAGTGAGCTCTGAATGTTGTTGCTTGTCTATGCCTTCCATTTTAACAACACTGTAATTTACTATCAGTGTATTGGATAAGTTTTTTAATTTGATGATTTTCTTCTGTGCCCTTTTCAATTTCTTCTGATGTGAGGTTCTTCTCGTTGAAGTTACTTATCTCAAAAAAAAAGTTAGTTGTTGGTTGGGCATGCCTCTCAGTTTTCATAGAATGTTATCCTATTAATCAACTTGCTCATGGTATTTTATTAATCAATGGATTTGGTGGCCATGCAGAAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAGGTTTGTCGAATAACATCCGCTGCTTTGATCTTCTGCCAAATTGTTTTCTTTCTTGCCTCTAATGTTGCATTGTATATCTGCAGCTCAATTTGTCAAGCACTTCGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGTTTGGTTTTGTGACTTATGCTGACCCATCCGTGGTAGATAAAGTCATTGAGGACGACCATGTTATAAATGGAAAGCAAGTAAGATTACATTAGCCTTCTATTTTATTTCATTCTTATAGCAGCTTGTGATTTCATTTCCTTTTTATTTTAGTGTGGATAGACAATTTGGGACCTCATGCTGATGTTTTGATTGTGTCAGGTGGAAATCAAGCGAACTATACCTAGAGGAGGAGGTTCCAGCTCAAAAGATTTCAAGACAAAGAAGATTTTTGTGGGCGGTATCCCAACAACAATTAGTGAAGGTTATATTTCTGTAGCTAGACTGATCACCTTGCCTTTAGTCGTTGGATTCTTTTGAAACAAGTCTTTGAGGTATTAAGTTGCATTTATATTTCAGATGAGTTCAGAGACTTCTTTTTAAAGTTTGGAGAGGTGAAAGAGCACCAGATCATGCGTGACCATTCTACTAGTCGTTCTCGTGGCTTTGGATTCATCACTTTTG</genome_strand>
        <mrna_strand>TCACGGTGAACCTCAGAGTTCCAGTTCCGATTCGTTGAAAACTTTCTTGAAAAGCACCGACAAACGTCTTCTTGTCAATGGAGGAACAAAATGGGACTGCAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGATGACCTAAGAACTACTCCCGACCATCAAAACGACACCGGCGCTTCTCAACCTCTTACCGGAGATGGTGCTAGTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAG...................................................................................CTCAATTTGTCAAGCACTTTGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGTTTGGTTTTGTGACTTATGCTGACCCCTCCGTGGTAGATAAAGTCATTGAGGACGACCATGTTATAAATGGAAAGCAA.........................................................................................................................GTGGAAATCAAGCGAACTATACCTAGAGGAGGAGGTTCCAGCTCAAAAGATTTCAAGACGAAGAAGATTTTTGTGGGCGGCATCCCAACAACAATTAGTGAAG...............................................................................................ATGAGTTCAGAGACTTCTTTTTAAAGTTTGGAGAAGTGAAGGAGCACCAGATCATGCGTGACCATTCTACTAGTCGTTCTCGTGGCTTTGGAATCATCACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363913" ref_strand="+" ref_description="SGN-E363913 [cLPT-10-L20]">
      <seq>aaactatctagggtttttgtatatttaagcgccgacaacgtcctgtactagatcagaccgcatattttcacggtgaacctcagagctccggttccgattcattgaaaacttccttgaaaagcaccgacaaacgtcttcttctcgatggaggaacaaaatgggactgcaaatggtgttaaaatcaagctggaggaagaagaaactaatgacgacctaagaactactcccgaccatcaaaacgacgccggcgcttctcagcctcttaccggagatggtgctagtcctggaaagatttttattgggggcttggctagagagacaacttcagctcaatttgtcaagcacttcggtaaatatggtgaaattattgattccgtgattatgaaggaaaggcggacaggacagccacgtgggtttggttttgtgacttatgctgacccatccgtggtagataaagtcattgaggacgaccatgttataaatggaaagcaagtggaaatcaagcgaactatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="78938" stop="76507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78638" g_stop="78352" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78351" i_stop="77240" i_length="1112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77239" g_stop="77199" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="328" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77198" i_stop="77116" i_length="83">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77115" g_stop="76952" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="492" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76951" i_stop="76831" i_length="121">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76830" g_stop="76807" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="516" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E363913" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78638" e_stop="78352"/>
          <exon e_start="77239" e_stop="77199"/>
          <exon e_start="77115" e_stop="76952"/>
          <exon e_start="76830" e_stop="76807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATCTAGGGTTTTGGTATATAAAAGCGCCGACAACGTCCTGTACTAGATCAGACCGCATATTTTCACGGTGAACCTCAGAGCTCCGGTTCCGATTCATTGAAAACTTCCTTGAAAAACACCGACAAACGTCTTCTTCTCGATGGAGGAACAAAATGGGACTGTAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGACGACCTTAGAACTACTCCCGACCATCAAAACGACGCCGGCGCTTCTCAGCCTCTTACCGGAGATGGTGCTAGTCCTGGGTATTTTTTTTTACTGTTTTGTCCTTTACGTTCTAGGCTGTACCCTTTTTCTTTTATCTAAGACCCATGCTGTATGTTTTTTCTTCTTTTAGTATTGTTATTAGGGCTTGTGTTTAATAGGTATTAACTTGCAAGTGTTGTTAATGTCGAGATGATTAAGACCTGAAGCTAGGTTGTAAGCTCCTTTCTCAAAGGAGGAAGGAAAACGATAAGCATAGTTATTAAATTGCTCTTAATTAAACAAGGTGAATAAATATGTTGATGATTAGGAATATAAATTTAGAGTTGAAATTTCATCATTCTGTATGAATCAGAATCAGAGTTTAAGATGCTGTTTGGGCTTGATTTTAGTTATTTTTCAGTTTCTTAGTCCTCATAACTTTTCATTGTGTTACATTTATATTTCTTACGTTTTTGCTCTCCTTCTTGGAGAGGAGTTCGTGGAGGACACAAATTAGGGTAGAAGGTTAGTATGTGCTAGTGCATTGTCTTGTTGTTTGTCCATTAATAGTAGTATTATTACTCTTGTAGTTTCTTTGCCTTTCCGATCTTTGTTACTATTTGTTGAATCTTGTACTTTGACTATTGTATTTGTTTTGTTTTAATACTCTTATTTTATCATCCGTTGTTGTTTTTGTTACTGTGTTGTTTCCCGCACTTCCGCTATTTCTTTTTTCTGTATGGCTTTGGACTGTTTTCTTGAGCTGGTGGTGTATCTGAAATAATCTCTGCATTTATGAGGTAGGGGTAAGGCTTGTATACACTCTACACTCTACGCTCTCCTCATACCCCACTTTGTGGTTGTTGCTTATCTGCAACATACCCATCGAAATTTTTTAAGTGAGCTCTGAATGTTGTTGCTTGTCTATGCCTTCCATTTTAACAACACTGTAATTTACTATCAGTGTATTGGATAAGTTTTTTAATTTGATGATTTTCTTCTGTGCCCTTTTCAATTTCTTCTGATGTGAGGTTCTTCTCGTTGAAGTTACTTATCTCAAAAAAAAAGTTAGTTGTTGGTTGGGCATGCCTCTCAGTTTTCATAGAATGTTATCCTATTAATCAACTTGCTCATGGTATTTTATTAATCAATGGATTTGGTGGCCATGCAGAAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAGGTTTGTCGAATAACATCCGCTGCTTTGATCTTCTGCCAAATTGTTTTCTTTCTTGCCTCTAATGTTGCATTGTATATCTGCAGCTCAATTTGTCAAGCACTTCGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGTTTGGTTTTGTGACTTATGCTGACCCATCCGTGGTAGATAAAGTCATTGAGGACGACCATGTTATAAATGGAAAGCAAGTAAGATTACATTAGCCTTCTATTTTATTTCATTCTTATAGCAGCTTGTGATTTCATTTCCTTTTTATTTTAGTGTGGATAGACAATTTGGGACCTCATGCTGATGTTTTGATTGTGTCAGGTGGAAATCAAGCGAACTATACCT</genome_strand>
        <mrna_strand>AAACTATCTAGGGTTTTTGTATATTTAAGCGCCGACAACGTCCTGTACTAGATCAGACCGCATATTTTCACGGTGAACCTCAGAGCTCCGGTTCCGATTCATTGAAAACTTCCTTGAAAAGCACCGACAAACGTCTTCTTCTCGATGGAGGAACAAAATGGGACTGCAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGACGACCTAAGAACTACTCCCGACCATCAAAACGACGCCGGCGCTTCTCAGCCTCTTACCGGAGATGGTGCTAGTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAG...................................................................................CTCAATTTGTCAAGCACTTCGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGTTTGGTTTTGTGACTTATGCTGACCCATCCGTGGTAGATAAAGTCATTGAGGACGACCATGTTATAAATGGAAAGCAA.........................................................................................................................GTGGAAATCAAGCGAACTATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437969" ref_strand="+" ref_description="SGN-E437969 [cSTA-5-N23]">
      <seq>gtgaacctcagagttccagttccgattcgttgaaaactttcttgaaaagcaccgacaaacgtcttcttgtcaatggaggaacaaaatgggactgcaaatggtgttaaaatcaagctggaggaagaagaaactaatgatgacctaagaactactcccgaccatcaaaacgacaccggcgcttctcaacctcttaccggagatggtgctagtcctggaaagatttttattgggggcttggctagagagacaacttcaggtttgtctaatatcatcctctgctttgatcttctgccaaattgttctttcctgcccctaatgttgcattgtatatctgcagctcaatttgtcaagcactttggtaaatatggtgaaattattgattccgtgattatgaaggaaaggcggacaggacagccacgtgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="78866" stop="76729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78566" g_stop="78352" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78351" i_stop="77240" i_length="1112">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77239" g_stop="77029" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="424" r_length="209" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E437969" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78566" e_stop="78352"/>
          <exon e_start="77239" e_stop="77029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACCTCAGAGCTCCGGTTCCGATTCATTGAAAACTTCCTTGAAAAACACCGACAAACGTCTTCTTCTCGATGGAGGAACAAAATGGGACTGTAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGACGACCTTAGAACTACTCCCGACCATCAAAACGACGCCGGCGCTTCTCAGCCTCTTACCGGAGATGGTGCTAGTCCTGGGTATTTTTTTTTACTGTTTTGTCCTTTACGTTCTAGGCTGTACCCTTTTTCTTTTATCTAAGACCCATGCTGTATGTTTTTTCTTCTTTTAGTATTGTTATTAGGGCTTGTGTTTAATAGGTATTAACTTGCAAGTGTTGTTAATGTCGAGATGATTAAGACCTGAAGCTAGGTTGTAAGCTCCTTTCTCAAAGGAGGAAGGAAAACGATAAGCATAGTTATTAAATTGCTCTTAATTAAACAAGGTGAATAAATATGTTGATGATTAGGAATATAAATTTAGAGTTGAAATTTCATCATTCTGTATGAATCAGAATCAGAGTTTAAGATGCTGTTTGGGCTTGATTTTAGTTATTTTTCAGTTTCTTAGTCCTCATAACTTTTCATTGTGTTACATTTATATTTCTTACGTTTTTGCTCTCCTTCTTGGAGAGGAGTTCGTGGAGGACACAAATTAGGGTAGAAGGTTAGTATGTGCTAGTGCATTGTCTTGTTGTTTGTCCATTAATAGTAGTATTATTACTCTTGTAGTTTCTTTGCCTTTCCGATCTTTGTTACTATTTGTTGAATCTTGTACTTTGACTATTGTATTTGTTTTGTTTTAATACTCTTATTTTATCATCCGTTGTTGTTTTTGTTACTGTGTTGTTTCCCGCACTTCCGCTATTTCTTTTTTCTGTATGGCTTTGGACTGTTTTCTTGAGCTGGTGGTGTATCTGAAATAATCTCTGCATTTATGAGGTAGGGGTAAGGCTTGTATACACTCTACACTCTACGCTCTCCTCATACCCCACTTTGTGGTTGTTGCTTATCTGCAACATACCCATCGAAATTTTTTAAGTGAGCTCTGAATGTTGTTGCTTGTCTATGCCTTCCATTTTAACAACACTGTAATTTACTATCAGTGTATTGGATAAGTTTTTTAATTTGATGATTTTCTTCTGTGCCCTTTTCAATTTCTTCTGATGTGAGGTTCTTCTCGTTGAAGTTACTTATCTCAAAAAAAAAGTTAGTTGTTGGTTGGGCATGCCTCTCAGTTTTCATAGAATGTTATCCTATTAATCAACTTGCTCATGGTATTTTATTAATCAATGGATTTGGTGGCCATGCAGAAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAGGTTTGTCGAATAACATCCGCTGCTTTGATCTTCTGCCAAATTGTTTTCTTTCTTGCCTCTAATGTTGCATTGTATATCTGCAGCTCAATTTGTCAAGCACTTCGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGT</genome_strand>
        <mrna_strand>GTGAACCTCAGAGTTCCAGTTCCGATTCGTTGAAAACTTTCTTGAAAAGCACCGACAAACGTCTTCTTGTCAATGGAGGAACAAAATGGGACTGCAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGATGACCTAAGAACTACTCCCGACCATCAAAACGACACCGGCGCTTCTCAACCTCTTACCGGAGATGGTGCTAGTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAGGTTTGTCTAATATCATCCTCTGCTTTGATCTTCTGCCAAATTG--TTCTTTCCTGCCCCTAATGTTGCATTGTATATCTGCAGCTCAATTTGTCAAGCACTTTGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213000" ref_strand="+" ref_description="SGN-E213000 [cLEC-72-G6]">
      <seq>tttgaggactaccagttaggtgataaaggtcaggaatgtggttcttcatttagtgtttccaccgcacagggatttggtctcatcaacaacacgaggcctttcatatcaccagcattaaaccaatcaactgttgatcaacctttttattcccattttccaagtacatttacagtggaaagagcaggggttgacactctatcaaaaaattctacctcattagcacaacaggccatttcccatatatttcccccaaacccgtcattgttgaactcttgtggcactagaaatagagtgcaatctactgcctcagatgtttccttttctccgtggaacaattcaaatcagtttgcaccttttaaaccagcttccagttcttccactgccttcactactccattaaggaacccattttctttatcaacatctgcccctctatctccatgttcggtctcaccttccacatatcctttgttaactaagccatcaggccatgatttttatcagaagaactctttttctaccactcctgttttaactacaggaggcgcttcacaatccacgttatgcttgaactgcctaaagcagtcacagcctactccaccaggactttctaatgtttcaagcactccacttgctgcgaatcaaaatactcctctgttcattggtcctctgcagccagaaataactcctaaagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="86290" stop="84744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85990" g_stop="85963" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85962" i_stop="85873" i_length="90">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85872" g_stop="85250" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="651" r_length="623" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85249" i_stop="85091" i_length="159">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85090" g_stop="85044" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="698" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E213000" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85990" e_stop="85963"/>
          <exon e_start="85872" e_stop="85250"/>
          <exon e_start="85090" e_stop="85044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGACTACCAGTTAGGTGATAAAGGTATCCTGAACTTTTTCTCTTATCTGTAGATAATAAAAAATCTACCTTGTATTTCATTAACATTTTTATTCTTCATGGGTGAATTTGCAGGTCAGGAATGTGGTTCTTCATTTAGTGTTTCCACCGCACAGGGATTTGGTCTCATCAACAACACGAGGCCTTTCATATCACCAGCATTAAACCAATCAACTGTTGATCAACCTTTTTATTCCCATTTTCCAAGTACATTTACAGTGGAAAGAGCAGGGGTTGACTCTCTATCAAAAAATTCTACCTCATTAGCACAACAGGCCATTTCCCATATATTTCCCCCAAACCCGTCATTGTTGAACTCTTGTGGCACTAGAAATAGAGTGCAATCTACTGCCTCAGATGTTTCCTTTTCTCCGTGGAACAATTCAAATCAGTTTGCACCTTTTAAACCAGCTTCCAGTTCTTCCACTGCCTTCACTACTCCATTAAGGAACCCATTTTCTTTATCAACATCTGCCCCTCTATCTCCATGTTCGGTCTCACCTTCCACATATCCTTTGTTAACTAAGCCATCAGGCCATGATTTTTATCAGAAGAACTCTTTTTCTACCACTCCTGTTTTAACTACAGGAGGCGCTTCACAATCCACGTTATGCTTGAACTGCCTAAAGCAGTCACAGCCTACTCCACCAGGACTTTCTAATGTTTCAAGCACTCCACTTGCTGCGAATCAAAATACTGTAAGTGTTTCTGAACGTATATGCAATTAGATCTCATTTATATATCTCCGCCATTTGCTTTCTGTCATGAATAATATAAAAGGCACCTTGTGGTCTATAAAATCGGTGAAACATTTCTATTGCGGTGTTGTACATCTAAGTTGTTGCCTACTCTTGCAGCCTCTGTTCATTGGTCCTCTGCAGCCAGAAATAACTCCTAAAGTTGG</genome_strand>
        <mrna_strand>TTTGAGGACTACCAGTTAGGTGATAAAG..........................................................................................GTCAGGAATGTGGTTCTTCATTTAGTGTTTCCACCGCACAGGGATTTGGTCTCATCAACAACACGAGGCCTTTCATATCACCAGCATTAAACCAATCAACTGTTGATCAACCTTTTTATTCCCATTTTCCAAGTACATTTACAGTGGAAAGAGCAGGGGTTGACACTCTATCAAAAAATTCTACCTCATTAGCACAACAGGCCATTTCCCATATATTTCCCCCAAACCCGTCATTGTTGAACTCTTGTGGCACTAGAAATAGAGTGCAATCTACTGCCTCAGATGTTTCCTTTTCTCCGTGGAACAATTCAAATCAGTTTGCACCTTTTAAACCAGCTTCCAGTTCTTCCACTGCCTTCACTACTCCATTAAGGAACCCATTTTCTTTATCAACATCTGCCCCTCTATCTCCATGTTCGGTCTCACCTTCCACATATCCTTTGTTAACTAAGCCATCAGGCCATGATTTTTATCAGAAGAACTCTTTTTCTACCACTCCTGTTTTAACTACAGGAGGCGCTTCACAATCCACGTTATGCTTGAACTGCCTAAAGCAGTCACAGCCTACTCCACCAGGACTTTCTAATGTTTCAAGCACTCCACTTGCTGCGAATCAAAATACT...............................................................................................................................................................CCTCTGTTCATTGGTCCTCTGCAGCCAGAAATAACTCCTAAAGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214100" ref_strand="+" ref_description="SGN-E214100 [cLEC-80-K8]">
      <seq>tttgaggactaccagttaggtgataaaggtcaggaatgtggttcttcatttagtgtttccaccgcacagggatttggtctcatcaacaacacgaggcctttcatatcaccagcattaaaccaatcaactgttgatcaacctttttattcccattttccaagtacatttacagtggaaagagcaggggttgacactctatcaaaaaattctacctcattaacacaacaggccatttcccatatatttcccccaaacccgtcattgttgaactcttgtggcactaaaaatagagtgcaatctactgcctcagatgtttccttttctccgtggaacaattcaaatcagtttgcaccttttaaaccagcttccagttcttccactgccttcactactccattaaggaacccattttctttatcaacatctgcccctctatctccatgttcggtctcaccttccacatatcctttgttaactaagccatcaggccatgatttttatcagaagaactctttttctaccactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="86290" stop="85073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85990" g_stop="85963" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85962" i_stop="85873" i_length="90">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85872" g_stop="85373" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="528" r_length="500" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E214100" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85990" e_stop="85963"/>
          <exon e_start="85872" e_stop="85373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGACTACCAGTTAGGTGATAAAGGTATCCTGAACTTTTTCTCTTATCTGTAGATAATAAAAAATCTACCTTGTATTTCATTAACATTTTTATTCTTCATGGGTGAATTTGCAGGTCAGGAATGTGGTTCTTCATTTAGTGTTTCCACCGCACAGGGATTTGGTCTCATCAACAACACGAGGCCTTTCATATCACCAGCATTAAACCAATCAACTGTTGATCAACCTTTTTATTCCCATTTTCCAAGTACATTTACAGTGGAAAGAGCAGGGGTTGACTCTCTATCAAAAAATTCTACCTCATTAGCACAACAGGCCATTTCCCATATATTTCCCCCAAACCCGTCATTGTTGAACTCTTGTGGCACTAGAAATAGAGTGCAATCTACTGCCTCAGATGTTTCCTTTTCTCCGTGGAACAATTCAAATCAGTTTGCACCTTTTAAACCAGCTTCCAGTTCTTCCACTGCCTTCACTACTCCATTAAGGAACCCATTTTCTTTATCAACATCTGCCCCTCTATCTCCATGTTCGGTCTCACCTTCCACATATCCTTTGTTAACTAAGCCATCAGGCCATGATTTTTATCAGAAGAACTCTTTTTCTACCACTCCT</genome_strand>
        <mrna_strand>TTTGAGGACTACCAGTTAGGTGATAAAG..........................................................................................GTCAGGAATGTGGTTCTTCATTTAGTGTTTCCACCGCACAGGGATTTGGTCTCATCAACAACACGAGGCCTTTCATATCACCAGCATTAAACCAATCAACTGTTGATCAACCTTTTTATTCCCATTTTCCAAGTACATTTACAGTGGAAAGAGCAGGGGTTGACACTCTATCAAAAAATTCTACCTCATTAACACAACAGGCCATTTCCCATATATTTCCCCCAAACCCGTCATTGTTGAACTCTTGTGGCACTAAAAATAGAGTGCAATCTACTGCCTCAGATGTTTCCTTTTCTCCGTGGAACAATTCAAATCAGTTTGCACCTTTTAAACCAGCTTCCAGTTCTTCCACTGCCTTCACTACTCCATTAAGGAACCCATTTTCTTTATCAACATCTGCCCCTCTATCTCCATGTTCGGTCTCACCTTCCACATATCCTTTGTTAACTAAGCCATCAGGCCATGATTTTTATCAGAAGAACTCTTTTTCTACCACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370957" ref_strand="+" ref_description="SGN-E370957 [TUS-27-P9]">
      <seq>gtcatttacactcaccggcagttcggctctcagctctcaactctccgatgacaatgtcgatcaaaacccttttaactcttcgatgacgatgtcaatcgaaaccacttaatcgattttcctgtcttagtacttcggctctcaactctccgatgacgatgtcgatcaaaacccttttaactctccgatgacgatgtccatcggaatccctaaatcgattttcccggcgatcaatctattggtgttctttccattatctactagagtactagagtagaattcttgtatgcattctacccttctttttttacaaaaatcaagaagttggtatcaaaagaagaaaccctaaactaattttcccgcggttcttatctgctcaagtaatagtactggtcttcccagggagtcaaaagatgtacatgcgatggggagtcaaaagaagaatttgcacgaacgatatctcaaagtttcttcgtttatgggacaaaatggaaggactgcagtccagagattacaattgagtaccttagctatatctcagatatttttgtgacttgttctctattttgttaagatgatggaattttttcttctccaatatgagttgcagagcggtactgaacagagtatctgaagatttaggattactgtactcaatgtaacttttgcgtcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="94059" stop="95880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94359" g_stop="94757" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94758" i_stop="95109" i_length="352">
            <donor d_prob="0.366" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95110" g_stop="95149" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="439" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95150" i_stop="95345" i_length="196">
            <donor d_prob="0.464" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95346" g_stop="95580" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="674" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E370957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94359" e_stop="94757"/>
          <exon e_start="95110" e_stop="95149"/>
          <exon e_start="95346" e_stop="95580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTACACTCACCGGCAGTTCGGCTCTCAGCTCTCAACTCTCCGATGACAATGTCGATCAAAACCCTTTTAACTCTTCGATGACGATGTCAATCGAAACCACTTAATCGATTTTCCTGTCTTAGTACTTCGGCTCTCAACTCTCCGATGACGATGTCGATCAAAACCCTTTTAACTCTCCGATGACGATGTCCATCGGAATCCCTAAATCGATTTTCCCGGCGATCAATCTATTGGTGTTCTTTCCATTATCTACTAGAGTACTAGAGTAGAATTCTTGTATGCATTCTACCCTTCTTTTTTTACAAAAATCAAGAAGTTGGTATCAAAAGAAGAAACCCTAAACTAATTTTCCCGCGGTTCTTATCTGCTCAAGTAATAGTACTGGTCTTCCCAGGTATTGTTCCACCCACTAATAAAGAGGTCTTCCCAGATATTCTTCCATCCACTAAAAAAGAGAAGGAAAATTCTTGCGCTTTTTTAGAAAAAAATTAAAGAATTGTTGGCTTTTTGTATTGACATTGATATTCTTATAGACATATATTAAGAAAATCAAGAATTCTTGCATGAATAATCTTAAAGAAAAATTCAAGAACTTGTCGGTATAGTTTAAGGAAATCAAAGAAAGGGTAGTTTTCAAGAATATGACGTTGCAAATATTAACGAAATTCAATAAATTCAAAAGAATTGTGTTGTCATTTTCTCAGCGGATGTTAAAGATGTTCAAGAATTTGTTTGAACTTTTTTAGGGAGTCAAAAGATGTACATGCGATGGGGAGTCAAAAGAAGGTAAAAGCATTCCTGTCATTTGTTGCTGACCTGAATAAGAGCTGAAGTTTTCTAGTGCATGTTTCAGTTAATTATTGAAATTATTAGAGATCAAATTGTTTCTTTCTAAGTCTCGTAGGCTATATAATTGCATCTTGCTTATGTTCAGATCTTGTAATAGAATGGTCATGCCTGACATATTTATTCAAATTTTCAGAATTTGCACGAACGATATCTCAAAGTTTCTTCGTTTATGGGACAAAATGGAAGGACTGCAGTCCAGAGATTACAATTGAGTACCTTAGCTATATCTCAGATATTTTTGTGACTTGTTCTCTATTTTGTTAAGATGATGGAATTTTTTCTTCTCCAATATGAGTTGCAGAGCGGTACTGAACAGAGTATCTGAAGATTTAGGATTACTGTACTCAATGTAACTTTTGCGTCTTGCA</genome_strand>
        <mrna_strand>GTCATTTACACTCACCGGCAGTTCGGCTCTCAGCTCTCAACTCTCCGATGACAATGTCGATCAAAACCCTTTTAACTCTTCGATGACGATGTCAATCGAAACCACTTAATCGATTTTCCTGTCTTAGTACTTCGGCTCTCAACTCTCCGATGACGATGTCGATCAAAACCCTTTTAACTCTCCGATGACGATGTCCATCGGAATCCCTAAATCGATTTTCCCGGCGATCAATCTATTGGTGTTCTTTCCATTATCTACTAGAGTACTAGAGTAGAATTCTTGTATGCATTCTACCCTTCTTTTTTTACAAAAATCAAGAAGTTGGTATCAAAAGAAGAAACCCTAAACTAATTTTCCCGCGGTTCTTATCTGCTCAAGTAATAGTACTGGTCTTCCCAG................................................................................................................................................................................................................................................................................................................................................................GGAGTCAAAAGATGTACATGCGATGGGGAGTCAAAAGAAG....................................................................................................................................................................................................AATTTGCACGAACGATATCTCAAAGTTTCTTCGTTTATGGGACAAAATGGAAGGACTGCAGTCCAGAGATTACAATTGAGTACCTTAGCTATATCTCAGATATTTTTGTGACTTGTTCTCTATTTTGTTAAGATGATGGAATTTTTTCTTCTCCAATATGAGTTGCAGAGCGGTACTGAACAGAGTATCTGAAGATTTAGGATTACTGTACTCAATGTAACTTTTGCGTCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271252" ref_strand="+" ref_description="SGN-E271252 [cLEM-5-O6]">
      <seq>gtcatttacactcaccggcagttcggctctcagctctcaactctccgatgacaatgtcgatcaaaacccttttaactcttcgatgacgatgtcaatcgaaaccacttaatcgattttcctgtcttagtacttcggctctcaactctccgatgacgatgtcgatcaaaacccttttaactctccgatgacgatgtccatcggaatccctaaatcgattttcccggcgatcaatctattggtgttctttccattatctactagagtactagagtagaattcttgtatgcattctacccttctttttttacaaaaatcaagaagttggtatcaaaagaagaaaccctaaactaattttcccgcggttcttatctgctcaagtaatagtactggtcttcccagggagtcaaaagatgtacatgcgatggggagtcaaaagaagaatttgcacgaacgatatctcaaagtttcttcgtttatgggacaaaatggaaggactgcagtccagagattacaattgagtaccttagctatatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="94059" stop="95742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94359" g_stop="94757" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94758" i_stop="95109" i_length="352">
            <donor d_prob="0.366" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95110" g_stop="95149" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="439" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95150" i_stop="95345" i_length="196">
            <donor d_prob="0.464" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95346" g_stop="95442" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="536" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E271252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94359" e_stop="94757"/>
          <exon e_start="95110" e_stop="95149"/>
          <exon e_start="95346" e_stop="95442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTACACTCACCGGCAGTTCGGCTCTCAGCTCTCAACTCTCCGATGACAATGTCGATCAAAACCCTTTTAACTCTTCGATGACGATGTCAATCGAAACCACTTAATCGATTTTCCTGTCTTAGTACTTCGGCTCTCAACTCTCCGATGACGATGTCGATCAAAACCCTTTTAACTCTCCGATGACGATGTCCATCGGAATCCCTAAATCGATTTTCCCGGCGATCAATCTATTGGTGTTCTTTCCATTATCTACTAGAGTACTAGAGTAGAATTCTTGTATGCATTCTACCCTTCTTTTTTTACAAAAATCAAGAAGTTGGTATCAAAAGAAGAAACCCTAAACTAATTTTCCCGCGGTTCTTATCTGCTCAAGTAATAGTACTGGTCTTCCCAGGTATTGTTCCACCCACTAATAAAGAGGTCTTCCCAGATATTCTTCCATCCACTAAAAAAGAGAAGGAAAATTCTTGCGCTTTTTTAGAAAAAAATTAAAGAATTGTTGGCTTTTTGTATTGACATTGATATTCTTATAGACATATATTAAGAAAATCAAGAATTCTTGCATGAATAATCTTAAAGAAAAATTCAAGAACTTGTCGGTATAGTTTAAGGAAATCAAAGAAAGGGTAGTTTTCAAGAATATGACGTTGCAAATATTAACGAAATTCAATAAATTCAAAAGAATTGTGTTGTCATTTTCTCAGCGGATGTTAAAGATGTTCAAGAATTTGTTTGAACTTTTTTAGGGAGTCAAAAGATGTACATGCGATGGGGAGTCAAAAGAAGGTAAAAGCATTCCTGTCATTTGTTGCTGACCTGAATAAGAGCTGAAGTTTTCTAGTGCATGTTTCAGTTAATTATTGAAATTATTAGAGATCAAATTGTTTCTTTCTAAGTCTCGTAGGCTATATAATTGCATCTTGCTTATGTTCAGATCTTGTAATAGAATGGTCATGCCTGACATATTTATTCAAATTTTCAGAATTTGCACGAACGATATCTCAAAGTTTCTTCGTTTATGGGACAAAATGGAAGGACTGCAGTCCAGAGATTACAATTGAGTACCTTAGCTATATCTC</genome_strand>
        <mrna_strand>GTCATTTACACTCACCGGCAGTTCGGCTCTCAGCTCTCAACTCTCCGATGACAATGTCGATCAAAACCCTTTTAACTCTTCGATGACGATGTCAATCGAAACCACTTAATCGATTTTCCTGTCTTAGTACTTCGGCTCTCAACTCTCCGATGACGATGTCGATCAAAACCCTTTTAACTCTCCGATGACGATGTCCATCGGAATCCCTAAATCGATTTTCCCGGCGATCAATCTATTGGTGTTCTTTCCATTATCTACTAGAGTACTAGAGTAGAATTCTTGTATGCATTCTACCCTTCTTTTTTTACAAAAATCAAGAAGTTGGTATCAAAAGAAGAAACCCTAAACTAATTTTCCCGCGGTTCTTATCTGCTCAAGTAATAGTACTGGTCTTCCCAG................................................................................................................................................................................................................................................................................................................................................................GGAGTCAAAAGATGTACATGCGATGGGGAGTCAAAAGAAG....................................................................................................................................................................................................AATTTGCACGAACGATATCTCAAAGTTTCTTCGTTTATGGGACAAAATGGAAGGACTGCAGTCCAGAGATTACAATTGAGTACCTTAGCTATATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316840" ref_strand="+" ref_description="SGN-E316840 [cTOA-27-G19]">
      <seq>tcatttacactcaccggcagttcggctctcagctctcaactctccgatgacaatgtcgatcaaaacccttttaactcttcgatgacgatgtcaatcgaaaccacttaatcgattttcctgtcttagtacttcggctctcaactctccgatgacgatgtcgatcaaaacccttttaactctccgatgacgatgtccatcggaatccctaaatcgattttcccggcgatcaatctattggtgttctttccattatctactagagtactagagtagaattcttgtatgcattctacccttctttttttacaaaaatcaagaagttggtatcaaaagaagaaaccctaaactaattttcccgcggttcttatctgctcaagtaatagtactggtcttcccagggagtcaaaagatgtacatgcgatggggagtcaaaagaagaatttgcacgaacgatatctcaaagtttcttcgtttatgggacaaaatggaaggactgcagtccagagattacaattgagtaccttagctatatctcagatatttttgtgacttgttctctattttgttaagatgatggaattttttcttctccaatatgagttgcagagcggtactgaacagagtatctgaagatttaggattactgtactcaatgtaacttttgcgtcttgcatatttttggtgattcattggttccttattcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="94060" stop="95915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94360" g_stop="94757" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94758" i_stop="95109" i_length="352">
            <donor d_prob="0.366" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95110" g_stop="95149" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="438" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95150" i_stop="95345" i_length="196">
            <donor d_prob="0.464" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95346" g_stop="95615" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="707" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E316840" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94360" e_stop="94757"/>
          <exon e_start="95110" e_stop="95149"/>
          <exon e_start="95346" e_stop="95615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTACACTCACCGGCAGTTCGGCTCTCAGCTCTCAACTCTCCGATGACAATGTCGATCAAAACCCTTTTAACTCTTCGATGACGATGTCAATCGAAACCACTTAATCGATTTTCCTGTCTTAGTACTTCGGCTCTCAACTCTCCGATGACGATGTCGATCAAAACCCTTTTAACTCTCCGATGACGATGTCCATCGGAATCCCTAAATCGATTTTCCCGGCGATCAATCTATTGGTGTTCTTTCCATTATCTACTAGAGTACTAGAGTAGAATTCTTGTATGCATTCTACCCTTCTTTTTTTACAAAAATCAAGAAGTTGGTATCAAAAGAAGAAACCCTAAACTAATTTTCCCGCGGTTCTTATCTGCTCAAGTAATAGTACTGGTCTTCCCAGGTATTGTTCCACCCACTAATAAAGAGGTCTTCCCAGATATTCTTCCATCCACTAAAAAAGAGAAGGAAAATTCTTGCGCTTTTTTAGAAAAAAATTAAAGAATTGTTGGCTTTTTGTATTGACATTGATATTCTTATAGACATATATTAAGAAAATCAAGAATTCTTGCATGAATAATCTTAAAGAAAAATTCAAGAACTTGTCGGTATAGTTTAAGGAAATCAAAGAAAGGGTAGTTTTCAAGAATATGACGTTGCAAATATTAACGAAATTCAATAAATTCAAAAGAATTGTGTTGTCATTTTCTCAGCGGATGTTAAAGATGTTCAAGAATTTGTTTGAACTTTTTTAGGGAGTCAAAAGATGTACATGCGATGGGGAGTCAAAAGAAGGTAAAAGCATTCCTGTCATTTGTTGCTGACCTGAATAAGAGCTGAAGTTTTCTAGTGCATGTTTCAGTTAATTATTGAAATTATTAGAGATCAAATTGTTTCTTTCTAAGTCTCGTAGGCTATATAATTGCATCTTGCTTATGTTCAGATCTTGTAATAGAATGGTCATGCCTGACATATTTATTCAAATTTTCAGAATTTGCACGAACGATATCTCAAAGTTTCTTCGTTTATGGGACAAAATGGAAGGACTGCAGTCCAGAGATTACAATTGAGTACCTTAGCTATATCTCAGATATTTTTGTGACTTGTTCTCTATTTTGTTAAGATGATGGAATTTTTTCTTCTCCAATATGAGTTGCAGAGCGGTACTGAACAGAGTATCTGAAGATTTAGGATTACTGTACTCAATGTAACTTTTGCGTCTTGCATATTTTTGGTGATTCATTGGTTCCTTATTCCACTG</genome_strand>
        <mrna_strand>TCATTTACACTCACCGGCAGTTCGGCTCTCAGCTCTCAACTCTCCGATGACAATGTCGATCAAAACCCTTTTAACTCTTCGATGACGATGTCAATCGAAACCACTTAATCGATTTTCCTGTCTTAGTACTTCGGCTCTCAACTCTCCGATGACGATGTCGATCAAAACCCTTTTAACTCTCCGATGACGATGTCCATCGGAATCCCTAAATCGATTTTCCCGGCGATCAATCTATTGGTGTTCTTTCCATTATCTACTAGAGTACTAGAGTAGAATTCTTGTATGCATTCTACCCTTCTTTTTTTACAAAAATCAAGAAGTTGGTATCAAAAGAAGAAACCCTAAACTAATTTTCCCGCGGTTCTTATCTGCTCAAGTAATAGTACTGGTCTTCCCAG................................................................................................................................................................................................................................................................................................................................................................GGAGTCAAAAGATGTACATGCGATGGGGAGTCAAAAGAAG....................................................................................................................................................................................................AATTTGCACGAACGATATCTCAAAGTTTCTTCGTTTATGGGACAAAATGGAAGGACTGCAGTCCAGAGATTACAATTGAGTACCTTAGCTATATCTCAGATATTTTTGTGACTTGTTCTCTATTTTGTTAAGATGATGGAATTTTTTCTTCTCCAATATGAGTTGCAGAGCGGTACTGAACAGAGTATCTGAAGATTTAGGATTACTGTACTCAATGTAACTTTTGCGTCTTGCATATTTTTGGTGATTCATTGGTTCCTTATT-CACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379622" ref_strand="+" ref_description="SGN-E379622 [TUS-1-I23]">
      <seq>taagtatgatcaatcttccaccccaagttgtggggacggtgtatttttctgttgaaaggccaaatgtgaaaaggaaacttgttaacatctggaatagcaaattagaagctcaaggggggacatgcacaggtccacacgatgggcagtcaaaagaagagcggtactggaagaggaacagataatcttaagaatcaggatactatactgagtgtcacttctggcgtgttgcatttcattggttcctgataccattgataaaaactgcattaagggtgccaaagttctcgaacaggttgataagaagtttattcccattgtggcaagcacaacacctgctataattgatcaggatttttctctttgcagtcattgttggtgatgtattttataacgaaccagttcgaaccaaaagaaggtcttgcattctctggaagagactctgctgagaatcacccttgtgcaatccagtgtctccttcaaaattgctgatattgaaagtgaggatgacgtgctttgcacatgtacctctcattctccattgccaaaattgtccagtggggtttgggattcaactgacctcccttaacaaattgaatgcaagtgatggttcattcaagctctcaggatacatttcaggtcctgatttttacgcaatgagcgtataaaggcccnaattgatggataagagatttgataggaatctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="95618" stop="97829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95918" g_stop="95975" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95976" i_stop="96074" i_length="99">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96075" g_stop="96172" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="156" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96173" i_stop="96594" i_length="422">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96595" g_stop="96787" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="349" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96788" i_stop="96988" i_length="201">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96989" g_stop="97044" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="405" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97045" i_stop="97158" i_length="114">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97159" g_stop="97251" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="498" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97252" i_stop="97330" i_length="79">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97331" g_stop="97528" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="697" r_length="199" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E379622" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95918" e_stop="95975"/>
          <exon e_start="96075" e_stop="96172"/>
          <exon e_start="96595" e_stop="96787"/>
          <exon e_start="96989" e_stop="97044"/>
          <exon e_start="97159" e_stop="97251"/>
          <exon e_start="97331" e_stop="97528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTATGATCAATCTTCCACCCCAAGTTGTGGGGACGGTGTATTTTTCTGTTGAAAGGTTATGTTATCAAATTTCTTGGGAGCGTTAGGTCTCTTTCTGATATTATCTCAACTAATTATGTCAATAACTCACACGATCTGATGTTTCTTTCTTCAGGCCAAATGTGAAAAGGAAACTTGTTAACATCTGGAATAGCAAATTAGAAGCTCAAGGGGGGACATGCACAGGTCCACACGATGGGCAGTCAAAAGAAGGTAAACCGTCATTTGTATCTAACCTAATAAGAGCTGAATTTTCCTAGTGCATGTTTCAGCTAATTAACTTCATTTCTTTCACCTATGTTTCAAGATTATGTTAAATTGCATTCTTACTAATCATGAAAGCATTAGAAATTACAATGTCTCTTTCTGAATCTCCTAGGCCACATAGTCTCTTTCAAATCCCATCTTGCTTATGTTTTGATCTTGTAATAAAATTTTCTTGCCTGACCTCTTTTATCAATTTTTCAGAATTTTTCACCAATAAAAACTCGAAGTTTCTTAGATTCTGGTATAAAATAGTGGGGACTCCCTAGAGATTACAGTTGAGTACTTTAGCTATATCTCGGATGTTTTTGCGACTTCTTCTCTATTTTGTTAAGATGATGGACTTCTGTCTTTCCCAATATGAGATGCAGAGCGGTACTGGAAGAGGAACAGATAATCTTAAGAATCAGGATACTATACTGAGTGTCACTTCTGGCGTGTTGCATTTCATTGGTTCCTGATACCATTGATAAAAACTGCATTAAGGGTGCCAAAGTTCTCGAACAGGTTGATAAGAAGTTTATTCCCATTGTGGCAAGCACAACACCTGCTATAATTGATCAGGTATATTTTGTTCTTGCATAGTCCATTATGGCCATTCTTGGTTTCTGAGTGCATGAACAAGTATATTCTGTAGTTACTTTTTTCAAACATAGTATCTTCATCACTAATAACAAATGATGATATAGGCTTATACAGGTAAAATTCCGTATAAGCCTATCTGATGCATGAGTTGACTGTTTGCTAATAAGGAGTTTCTCTTAGGATTTTTCTCTTTGCAGTCATTGTTGGTGATGTATTTTATAACGAACCAGTTCGAAGTAAGCAAATGCACTCCAAGTACTTTTAGTTTTCTCACAATTCAAACAAATGAAAATTACTGATTTACATACTTTACTTCTAAAATCTTTTGGTTTGCATATATAATCTGGAAGCCAAAAGAAGGTCTTGCATTCTCTGGAAGAGACTCTGCTGAGAATCACCCTTGTGCAATCCAGTGTCTCCTTCAAAATTGCTGATATTGAAAGGTCCGATCCGTCTTTGTTACACTAGCTAGCTTAAAGATATTTTCTGTCTGGTTTCTTAGGTTTTGTTCATTGCATTCAGTGAGGATGACGTGCTTTGCACATGTACCTCTCATTCTCCATTGCCAAAATTGTCCAGT-GGGTTTGGGATTCAACTGACCTCCCTTAACAAATTGAATGCAAGTGATGGTTCATTCAAGCTCTCAGGATACATTTCAGGTCCTGATTTTTACGCAATGAGCGTATAAAGGCCCAAATTGATGGATAAGAGATTTGATAG</genome_strand>
        <mrna_strand>TAAGTATGATCAATCTTCCACCCCAAGTTGTGGGGACGGTGTATTTTTCTGTTGAAAG...................................................................................................GCCAAATGTGAAAAGGAAACTTGTTAACATCTGGAATAGCAAATTAGAAGCTCAAGGGGGGACATGCACAGGTCCACACGATGGGCAGTCAAAAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGTACTGGAAGAGGAACAGATAATCTTAAGAATCAGGATACTATACTGAGTGTCACTTCTGGCGTGTTGCATTTCATTGGTTCCTGATACCATTGATAAAAACTGCATTAAGGGTGCCAAAGTTCTCGAACAGGTTGATAAGAAGTTTATTCCCATTGTGGCAAGCACAACACCTGCTATAATTGATCAG.........................................................................................................................................................................................................GATTTTTCTCTTTGCAGTCATTGTTGGTGATGTATTTTATAACGAACCAGTTCGAA..................................................................................................................CCAAAAGAAGGTCTTGCATTCTCTGGAAGAGACTCTGCTGAGAATCACCCTTGTGCAATCCAGTGTCTCCTTCAAAATTGCTGATATTGAAAG...............................................................................TGAGGATGACGTGCTTTGCACATGTACCTCTCATTCTCCATTGCCAAAATTGTCCAGTGGGGTTTGGGATTCAACTGACCTCCCTTAACAAATTGAATGCAAGTGATGGTTCATTCAAGCTCTCAGGATACATTTCAGGTCCTGATTTTTACGCAATGAGCGTATAAAGGCCCNAATTGATGGATAAGAGATTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200924" ref_strand="+" ref_description="SGN-E200924 [cLEC-5-D18]">
      <seq>taagtatgatcaatcttccaccccaagttgtggggacggtgtatttttctgttgaaaggccaaatgtgaaaaggaaacttgttaacatctggaatagcaaattagaagctcaaggggggacatgcacaggtccacacgatgggcagtcaaaagaagagcggtactggaagaggaacagataatcttaagaatcaggatactatactgagtgtcacttctggcgtgttgcatttcattggttcctgataccattgataaaaactgcattaagggtgccaaagttctcgaacaggttgataagaagtttattcccattgtggcaagcacaacacctgctataattgatcaggatttttctctttgcagtcattggtggtgatgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="95618" stop="97325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95918" g_stop="95975" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95976" i_stop="96074" i_length="99">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96075" g_stop="96172" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="156" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96173" i_stop="96594" i_length="422">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.438" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96595" g_stop="96787" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="349" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96788" i_stop="96988" i_length="201">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96989" g_stop="97025" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="386" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E200924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95918" e_stop="95975"/>
          <exon e_start="96075" e_stop="96172"/>
          <exon e_start="96595" e_stop="96787"/>
          <exon e_start="96989" e_stop="97025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTATGATCAATCTTCCACCCCAAGTTGTGGGGACGGTGTATTTTTCTGTTGAAAGGTTATGTTATCAAATTTCTTGGGAGCGTTAGGTCTCTTTCTGATATTATCTCAACTAATTATGTCAATAACTCACACGATCTGATGTTTCTTTCTTCAGGCCAAATGTGAAAAGGAAACTTGTTAACATCTGGAATAGCAAATTAGAAGCTCAAGGGGGGACATGCACAGGTCCACACGATGGGCAGTCAAAAGAAGGTAAACCGTCATTTGTATCTAACCTAATAAGAGCTGAATTTTCCTAGTGCATGTTTCAGCTAATTAACTTCATTTCTTTCACCTATGTTTCAAGATTATGTTAAATTGCATTCTTACTAATCATGAAAGCATTAGAAATTACAATGTCTCTTTCTGAATCTCCTAGGCCACATAGTCTCTTTCAAATCCCATCTTGCTTATGTTTTGATCTTGTAATAAAATTTTCTTGCCTGACCTCTTTTATCAATTTTTCAGAATTTTTCACCAATAAAAACTCGAAGTTTCTTAGATTCTGGTATAAAATAGTGGGGACTCCCTAGAGATTACAGTTGAGTACTTTAGCTATATCTCGGATGTTTTTGCGACTTCTTCTCTATTTTGTTAAGATGATGGACTTCTGTCTTTCCCAATATGAGATGCAGAGCGGTACTGGAAGAGGAACAGATAATCTTAAGAATCAGGATACTATACTGAGTGTCACTTCTGGCGTGTTGCATTTCATTGGTTCCTGATACCATTGATAAAAACTGCATTAAGGGTGCCAAAGTTCTCGAACAGGTTGATAAGAAGTTTATTCCCATTGTGGCAAGCACAACACCTGCTATAATTGATCAGGTATATTTTGTTCTTGCATAGTCCATTATGGCCATTCTTGGTTTCTGAGTGCATGAACAAGTATATTCTGTAGTTACTTTTTTCAAACATAGTATCTTCATCACTAATAACAAATGATGATATAGGCTTATACAGGTAAAATTCCGTATAAGCCTATCTGATGCATGAGTTGACTGTTTGCTAATAAGGAGTTTCTCTTAGGATTTTTCTCTTTGCAGTCATTGTTGGTGATGTATTT</genome_strand>
        <mrna_strand>TAAGTATGATCAATCTTCCACCCCAAGTTGTGGGGACGGTGTATTTTTCTGTTGAAAG...................................................................................................GCCAAATGTGAAAAGGAAACTTGTTAACATCTGGAATAGCAAATTAGAAGCTCAAGGGGGGACATGCACAGGTCCACACGATGGGCAGTCAAAAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGTACTGGAAGAGGAACAGATAATCTTAAGAATCAGGATACTATACTGAGTGTCACTTCTGGCGTGTTGCATTTCATTGGTTCCTGATACCATTGATAAAAACTGCATTAAGGGTGCCAAAGTTCTCGAACAGGTTGATAAGAAGTTTATTCCCATTGTGGCAAGCACAACACCTGCTATAATTGATCAG.........................................................................................................................................................................................................GATTTTTCTCTTTGCAGTCATTGGTGGTGATGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262510" ref_strand="+" ref_description="SGN-E262510 [cLEG-63-A11]">
      <seq>actggttcattttttttccatgtgagatttgcaatcaaattggctgaaatgatgtgtagcattttactctctgttggcaccattggattggcacctcgtccttctctttattgaggatcctgtcacgaatctctggactatattcttgagatcagtgaaggcaggtatagagctcagagttgcaaagctacacttgaacttctttccccactgccaaagaaactgactggagagtgctctgtcagagagatattcaatcttcttctgatattctgtggggaagtgctctgggtccagattcctctgtcagattgaaagttttcaagtcagtcaatcatggatctcttgctcattgcacagccggtgtaaactggagatctgttgatgatggaacatcttttgatattgatgaagatatattaagtttgaaaaagtgactagagtactaaacaaagttgccttggagatggtgttgaacataaagcagttgataatatttaccagatactatatcaaaagattttgaaaattatccaggtgcaaaactaaggcattgcagaagtcaaaaattttgtcaagatatccagaaaaatcttcattgaccaaggacatcttatggatcataaatagtagttggagtagttcattccgaatttttcatatttataattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="98023" stop="99737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98323" g_stop="98407" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98408" i_stop="98497" i_length="90">
            <donor d_prob="0.595" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98498" g_stop="98551" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="139" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98552" i_stop="98904" i_length="353">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98905" g_stop="99437" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="672" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E262510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98323" e_stop="98407"/>
          <exon e_start="98498" e_stop="98551"/>
          <exon e_start="98905" e_stop="99437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGTTCATTTTTTTTCCATGTGAGATTTGCAATCAAATTGGCTGAAATGATGTGTAGCATTTTACTCTCTGTTGGCACCATTGGTACTGATTGTGTTAATCTCATAAGGCTACTTTGATGTGTTTTACAGGAATTTCTTGTGGTCACTAAATGGTTTTTAATGTTACTTGTAGGATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACTGTAAGTACCGGTGAGAGCATGCTCTATCGACATTTTTATGCAACATAACTTTGCATTCATGGCATTTGATGTTATTTGTACATGTGGCTTTGTCCACTCCACATTCCCTTTCCTGTTGGCTGCAGCCACCACCTGCTGCCCTAAAAGGGGGACCAATTGTGGAAAGGTTGGTTGGTGGAAGAAAGAGTTACTTATGCATCAGATGGTGCAAATCATTTGAGTGTTACGCCATCGTGTAGTTTTATCACTTTCTTTTCTCTTAAGCTACTTGGATTTGGAAAACTTAGATCAGAAAATAGCTGTTGAAGTATCCTCCTCATCTGATGCTGTCCCATTCACTGCTCCCCTTCCAGATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTTTGTCAAGATATCCAGAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAGTAGTTGGAGTAGTTCATTCCGAATTTTTCATATTTATAATTT</genome_strand>
        <mrna_strand>ACTGGTTCATTTTTTTTCCATGTGAGATTTGCAATCAAATTGGCTGAAATGATGTGTAGCATTTTACTCTCTGTTGGCACCATTG..........................................................................................GATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACT.................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTTTGTCAAGATATCCAGAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAGTAGTTGGAGTAGTTCATTCCGAATTTTTCATATTTATAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258741" ref_strand="+" ref_description="SGN-E258741 [cLEG-50-I21]">
      <seq>actggttcattttttttccatgtgagatttgcaatcaaattggctgaaatgatgtgtagcattttactctctgttggcaccattggattggcacctcgtccttctctttattgaggatcctgtcacgaatctctggactatattcttgagatcagtgaaggcaggtatagagctcagagttgcaaagctacacttgaacttctttccccactgccaaagaaactgactggagagtgctctgtcagagagatattcaatcttcttctgatattctgtggggaagtgctctgggtccagattcctctgtcagattgaaagttttcaagtcagtcaatcatggatctcttgctcattgcacagccggtgtaaactggagatctgttgatgatggaacatcttttgatattgatgaagatatattaagtttgaaaaagtgactagagtactaaacaaagttgccttggagatggtgttgaacataaagcagttgataatatttaccagatactatatcaaaagattttgaaaattatccaggtgcaaaactaaggcattgcagaagtcaaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="98023" stop="99637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98323" g_stop="98407" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98408" i_stop="98497" i_length="90">
            <donor d_prob="0.595" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98498" g_stop="98551" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="139" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98552" i_stop="98904" i_length="353">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98905" g_stop="99337" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="572" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E258741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98323" e_stop="98407"/>
          <exon e_start="98498" e_stop="98551"/>
          <exon e_start="98905" e_stop="99337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGTTCATTTTTTTTCCATGTGAGATTTGCAATCAAATTGGCTGAAATGATGTGTAGCATTTTACTCTCTGTTGGCACCATTGGTACTGATTGTGTTAATCTCATAAGGCTACTTTGATGTGTTTTACAGGAATTTCTTGTGGTCACTAAATGGTTTTTAATGTTACTTGTAGGATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACTGTAAGTACCGGTGAGAGCATGCTCTATCGACATTTTTATGCAACATAACTTTGCATTCATGGCATTTGATGTTATTTGTACATGTGGCTTTGTCCACTCCACATTCCCTTTCCTGTTGGCTGCAGCCACCACCTGCTGCCCTAAAAGGGGGACCAATTGTGGAAAGGTTGGTTGGTGGAAGAAAGAGTTACTTATGCATCAGATGGTGCAAATCATTTGAGTGTTACGCCATCGTGTAGTTTTATCACTTTCTTTTCTCTTAAGCTACTTGGATTTGGAAAACTTAGATCAGAAAATAGCTGTTGAAGTATCCTCCTCATCTGATGCTGTCCCATTCACTGCTCCCCTTCCAGATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTT</genome_strand>
        <mrna_strand>ACTGGTTCATTTTTTTTCCATGTGAGATTTGCAATCAAATTGGCTGAAATGATGTGTAGCATTTTACTCTCTGTTGGCACCATTG..........................................................................................GATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACT.................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262798" ref_strand="+" ref_description="SGN-E262798 [cLEG-63-N6]">
      <seq>actggttcattttttttccatgtgagatttgcaatcaaattggctgaaatgatgtgtagcattttactctctgttggcaccattggattggcacctcgtccttctctttattgaggatcctgtcacgaatctctggactatattcttgagatcagtgaaggcaggtatagagctcagagttgcaaagctacacttgaacttctttccccactgccaaagaaactgactggagagtgctctgtcagagagatattcaatcttcttctgatattctgtggggaagtgctctgggtccagattcctctgtcagattgaaagttttcaagtcagtcaatcatggatctcttgctcattgcacagccggtgtaaactggagatctgttgatgatggaacatcttttgatattgatgaagatatattaagtttgaaaaagtgactagagtactaaacaaagttgccttggagatggtgttgaacataaagcagttgataatatttaccagatactatatcaaagattttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="98023" stop="99592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98323" g_stop="98407" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98408" i_stop="98497" i_length="90">
            <donor d_prob="0.595" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98498" g_stop="98551" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="139" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98552" i_stop="98904" i_length="353">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98905" g_stop="99292" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="526" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E262798" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98323" e_stop="98407"/>
          <exon e_start="98498" e_stop="98551"/>
          <exon e_start="98905" e_stop="99292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGTTCATTTTTTTTCCATGTGAGATTTGCAATCAAATTGGCTGAAATGATGTGTAGCATTTTACTCTCTGTTGGCACCATTGGTACTGATTGTGTTAATCTCATAAGGCTACTTTGATGTGTTTTACAGGAATTTCTTGTGGTCACTAAATGGTTTTTAATGTTACTTGTAGGATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACTGTAAGTACCGGTGAGAGCATGCTCTATCGACATTTTTATGCAACATAACTTTGCATTCATGGCATTTGATGTTATTTGTACATGTGGCTTTGTCCACTCCACATTCCCTTTCCTGTTGGCTGCAGCCACCACCTGCTGCCCTAAAAGGGGGACCAATTGTGGAAAGGTTGGTTGGTGGAAGAAAGAGTTACTTATGCATCAGATGGTGCAAATCATTTGAGTGTTACGCCATCGTGTAGTTTTATCACTTTCTTTTCTCTTAAGCTACTTGGATTTGGAAAACTTAGATCAGAAAATAGCTGTTGAAGTATCCTCCTCATCTGATGCTGTCCCATTCACTGCTCCCCTTCCAGATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAA</genome_strand>
        <mrna_strand>ACTGGTTCATTTTTTTTCCATGTGAGATTTGCAATCAAATTGGCTGAAATGATGTGTAGCATTTTACTCTCTGTTGGCACCATTG..........................................................................................GATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACT.................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATC-AAAGATTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264517" ref_strand="+" ref_description="SGN-E264517 [cLEG-67-C16]">
      <seq>ctggttcattttttttccatgtgagatttgcaatcaaattggctgaaatgatgtgtagcattttactctctgttggcaccattggattggcacctcgtccttctctttattgaggatcctgtcacgaatctctggactatattcttgagatcagtgaaggcaggtatagagctcagagttgcaaagctacacttgaacttctttccccactgccaaagaaactgactggagagtgctctgtcagagagatattcaatcttcttctgatattctgtggggaagtgctctgggtccagattcctctgtcagattgaaagttttcaagtcagtcaatcatggatctcttgctcattgcacagccggtgtaaaactggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="98024" stop="99441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98324" g_stop="98407" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98408" i_stop="98497" i_length="90">
            <donor d_prob="0.595" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98498" g_stop="98551" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="138" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98552" i_stop="98904" i_length="353">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98905" g_stop="99141" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="376" r_length="238" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E264517" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98324" e_stop="98407"/>
          <exon e_start="98498" e_stop="98551"/>
          <exon e_start="98905" e_stop="99141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTCATTTTTTTTCCATGTGAGATTTGCAATCAAATTGGCTGAAATGATGTGTAGCATTTTACTCTCTGTTGGCACCATTGGTACTGATTGTGTTAATCTCATAAGGCTACTTTGATGTGTTTTACAGGAATTTCTTGTGGTCACTAAATGGTTTTTAATGTTACTTGTAGGATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACTGTAAGTACCGGTGAGAGCATGCTCTATCGACATTTTTATGCAACATAACTTTGCATTCATGGCATTTGATGTTATTTGTACATGTGGCTTTGTCCACTCCACATTCCCTTTCCTGTTGGCTGCAGCCACCACCTGCTGCCCTAAAAGGGGGACCAATTGTGGAAAGGTTGGTTGGTGGAAGAAAGAGTTACTTATGCATCAGATGGTGCAAATCATTTGAGTGTTACGCCATCGTGTAGTTTTATCACTTTCTTTTCTCTTAAGCTACTTGGATTTGGAAAACTTAGATCAGAAAATAGCTGTTGAAGTATCCTCCTCATCTGATGCTGTCCCATTCACTGCTCCCCTTCCAGATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGT-AAACTGGAG</genome_strand>
        <mrna_strand>CTGGTTCATTTTTTTTCCATGTGAGATTTGCAATCAAATTGGCTGAAATGATGTGTAGCATTTTACTCTCTGTTGGCACCATTG..........................................................................................GATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACT.................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAAACTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257745" ref_strand="+" ref_description="SGN-E257745 [cLEG-39-D2]">
      <seq>cattttttttccatgtgagattcgcaatcaaattggctgaaatgatggacaccattttactctctgttggcaccattggattggcacctcgtccttctctttattgaggatcctgtcacgaatctctggactatattcttgagatcagtgaaggccaggtatagagctcagagttgcaaagctacacttgaacttctttccccactgccaaagacactgactggagagtgctctgtcagagagatattcaatcttcttctgatattctgtggggaagtgctctgggtccagattcctctgtcagattgaaagttttcaagtcagtcaatcatggatctcttgctcattgcacagccggcgtaaactggagatctgttgatgatggaacatcttttgatattgatgaagatatattaagtttgaaaaagtgactagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="98030" stop="99509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98330" g_stop="98407" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98408" i_stop="98497" i_length="90">
            <donor d_prob="0.595" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98498" g_stop="98551" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="132" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98552" i_stop="98904" i_length="353">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98905" g_stop="99209" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="438" r_length="306" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E257745" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98330" e_stop="98407"/>
          <exon e_start="98498" e_stop="98551"/>
          <exon e_start="98905" e_stop="99209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTTTTCCATGTGAGATTTGCAATCAAATTGGCTGAAATGATGTGTAGCATTTTACTCTCTGTTGGCACCATTGGTACTGATTGTGTTAATCTCATAAGGCTACTTTGATGTGTTTTACAGGAATTTCTTGTGGTCACTAAATGGTTTTTAATGTTACTTGTAGGATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACTGTAAGTACCGGTGAGAGCATGCTCTATCGACATTTTTATGCAACATAACTTTGCATTCATGGCATTTGATGTTATTTGTACATGTGGCTTTGTCCACTCCACATTCCCTTTCCTGTTGGCTGCAGCCACCACCTGCTGCCCTAAAAGGGGGACCAATTGTGGAAAGGTTGGTTGGTGGAAGAAAGAGTTACTTATGCATCAGATGGTGCAAATCATTTGAGTGTTACGCCATCGTGTAGTTTTATCACTTTCTTTTCTCTTAAGCTACTTGGATTTGGAAAACTTAGATCAGAAAATAGCTGTTGAAGTATCCTCCTCATCTGATGCTGTCCCATTCACTGCTCCCCTTCCAGATATTCTTGAGATCAGTGAAGG-CAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGT</genome_strand>
        <mrna_strand>CATTTTTTTTCCATGTGAGATTCGCAATCAAATTGGCTGAAATGATGGACACCATTTTACTCTCTGTTGGCACCATTG..........................................................................................GATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACT.................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGAGATCAGTGAAGGCCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGACACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGCGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370956" ref_strand="+" ref_description="SGN-E370956 [TUS-27-P9](-)">
      <seq>gatcctgtcacgaatctctggactgtaagtaccgatattcttgagatcagtgaaggcaggtatagagctcagagttgcaaagctacacttgaacttctttccccactgccaaagaaactgactggagagtgctctgtcagagagatattcaatcttcttctgatattctgtggggaagtgctctgggtccagattcctctgtcagattgaaagttttcaagtcagtcaatcatggatctcttgctcattgcacagccggtgtaaactggagatctgttgatgatggaacatcttttgatattgatgaagatatattaagtttgaaaaagtgactagagtactaaacaaagttgccttggagatggtgttgaacataaagcagttgataatatttaccagatactatatcaaaagattttgaaaattatccaggtgcaaaactaaggcattgcagaagtcaaaaattttgtcaagatatccagaaaaatcttcattgaccaaggacatcttatggatcataaatagtagttggagtagttcattccgaatttttcatatttataattttgacaatactccggtaagttttttagtcttattcgataaccatagcatactataacaggatttctactttgtaattttattactacgaatatttattttgtgaaataagttgtttggaccgatttttaagcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="98228" stop="99871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98528" g_stop="98561" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98562" i_stop="98904" i_length="343">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98905" g_stop="99570" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="700" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E370956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98528" e_stop="98561"/>
          <exon e_start="98905" e_stop="99570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTGTCACGAATCTCTGGACTGTAAGTACCGGTGAGAGCATGCTCTATCGACATTTTTATGCAACATAACTTTGCATTCATGGCATTTGATGTTATTTGTACATGTGGCTTTGTCCACTCCACATTCCCTTTCCTGTTGGCTGCAGCCACCACCTGCTGCCCTAAAAGGGGGACCAATTGTGGAAAGGTTGGTTGGTGGAAGAAAGAGTTACTTATGCATCAGATGGTGCAAATCATTTGAGTGTTACGCCATCGTGTAGTTTTATCACTTTCTTTTCTCTTAAGCTACTTGGATTTGGAAAACTTAGATCAGAAAATAGCTGTTGAAGTATCCTCCTCATCTGATGCTGTCCCATTCACTGCTCCCCTTCCAGATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTTTGTCAAGATATCCAGAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAGTAGTTGGAGTAGTTCATTCCGAATTTTTCATATTTATAATTTTGACAATACTCCGGTAAGTTTTTTAGTCTTATTCGATAACCATAGCATACTATAACAGGATTTCTACTTTGTAATTTTATTACTACGAATATTTATTTTGTGAAATAAGTTGTTTGGACCGATTTTTAAGCAA</genome_strand>
        <mrna_strand>GATCCTGTCACGAATCTCTGGACTGTAAGTACCG.......................................................................................................................................................................................................................................................................................................................................................ATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTTTGTCAAGATATCCAGAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAGTAGTTGGAGTAGTTCATTCCGAATTTTTCATATTTATAATTTTGACAATACTCCGGTAAGTTTTTTAGTCTTATTCGATAACCATAGCATACTATAACAGGATTTCTACTTTGTAATTTTATTACTACGAATATTTATTTTGTGAAATAAGTTGTTTGGACCGATTTTTAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379800" ref_strand="+" ref_description="SGN-E379800 [TUS-1-I23](-)">
      <seq>ggactgtaagtaccgatattcttgagatcagtgaaggcaggtatagagctcagagttgcaaagctacacttgaacttctttccccactgccaaagaaactgactggagagtgctctgtcagagagatattcaatcttcttctgatattctgtggggaagtgctctgggtccagattcctctgtcagattgaaagttttcaagtcagtcaatcatggatctcttgctcattgcacagccggtgtaaactggagatctgttgatgatggaacatcttttgatattgatgaagatatattaagtttgaaaaagtgactagagtactaaacaaagttgccttggagatggtgttgaacataaagcagttgataatatttaccagatactatatcaaaagattttgaaaattatccaggtgcaaaactaaggcattgcagaagtcaaaaattttgtcaagatatccagaaaaatcttcattgaccaaggacatcttatggatcataaatagtagttggagtagttcattccgaatttttcatatttataattttgacaatactccggtaagttttttagtcttattcgataaccatagcatactataacaggatttctactttggaatttattactacgaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="98599" stop="99829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98890" g_stop="99529" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E379800" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98890" e_stop="99529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCCCCTTCCAGATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTTTGTCAAGATATCCAGAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAGTAGTTGGAGTAGTTCATTCCGAATTTTTCATATTTATAATTTTGACAATACTCCGGTAAGTTTTTTAGTCTTATTCGATAACCATAGCATACTATAACAGGATTTCTACTTTGTAATTTTATTACTACGAATAT</genome_strand>
        <mrna_strand>GGACTGTAAGTACCGATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTTTGTCAAGATATCCAGAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAGTAGTTGGAGTAGTTCATTCCGAATTTTTCATATTTATAATTTTGACAATACTCCGGTAAGTTTTTTAGTCTTATTCGATAACCATAGCATACTATAACAGGATTTCTACTTTGGAA-TTTATTACTACGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356136" ref_strand="+" ref_description="SGN-E356136 [cTOS-20-G7]">
      <seq>tgactggagagtgctctgtcagagagatattcaatcttcttctgatattctgtggggaagtgctctgggtccagattcctctgtcagattgaaagttttcaagtcagtcaatcatggatctcttgctcattgcacagccggtgtaaactggagatctgttgatgatggaacatcttttgatattgatgaagatatattaagtttgaaaaagtgactagagtactaaacaaagttgccttggagatggtgttgaacataaagcagttgataatatttaccagatactatatcaaaagattttgaaaattatccaggtgcaaaactaaaggattgcagaagtcaaaaattttgtccagatattcaaaaaaatcttcattgaccaaggacatcttatggatcataaataataattggaataattcattcccaaattttcctaattataaatttgaccatactcccggaaggtttttaatcttattccataaccctaacatactattaccagatttccactttggaattttattaccaccaatatttattttgtgaaataaattggttggaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="98689" stop="99859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98989" g_stop="99545" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="580"/>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E356136" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98989" e_stop="99545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTTTGTCAAGATATCCAGAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAGTAGTTGGAGTAGTTCATTCCGAATTTTTCATATTTATAATTTTGACAATACTCCGGTAAGTTTTTTAGTCTTATTCGATAACCATAGCATACTATAACAGGATTTCTACTTTGTAATTTTATTACTACGAATATTTATTTTGTGAAATAA</genome_strand>
        <mrna_strand>TGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAAGGATTGCAGAAGTCAAAAATTTTGTCCAGATATTCAAAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAATAATTGGAATAATTCATTCCCAAATTTTCCTAATTATAAATTTGACCATACTCCCGGAAGGTTTTTAATCTTATTCCATAACCCTAACATACTATTACCAGATTTCCACTTTGGAATTTTATTACCACCAATATTTATTTTGTGAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442797" ref_strand="+" ref_description="SGN-E442797 [cSTA-35-C3]">
      <seq>gagagaagaacctcagagcctacatgatgaaggagatcatccgtctacctatgaagtttcttattctctgtatcaccgtttctttcttattccaacattgttcttgcctaaagattggagaaacttgtaccgacagtaattgtgacgaaggattagtctgctctacttgtcctgctaatggcaatacccgacccagatgtactcgcattcaacccactattcctaccaccaaggtaaaaggtttgccattcaacaagtattcgtggctgacgacccacaactcctttgcaatttccgggtcaaaatctgcaactgggtctgatattcttgctccgaccaaccaggaagattccattactaatcagctcaaggtgatttgctctattttctctaattatgaaatgaatatttgaggaattttagttgttcaattgattagctagctgaattttcattgtaaaaataattttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="99971" stop="101331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100271" g_stop="100302" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100303" i_stop="100406" i_length="104">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100407" g_stop="100487" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="113" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100488" i_stop="100596" i_length="109">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100597" g_stop="100716" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="233" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100717" i_stop="100816" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100817" g_stop="101029" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="449" r_length="216" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E442797" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100271" e_stop="100302"/>
          <exon e_start="100407" e_stop="100487"/>
          <exon e_start="100597" e_stop="100716"/>
          <exon e_start="100817" e_stop="101029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAAGAACCTCAGAGCCTACATGATGAAGGCATGCAATCTCTTAATCTCAATTTCTTACTGCTAATTACTCTTAATTATCTCAAATTCTCATAATGAAAAAATCTTTGCATTTATTTATTTTCTATTTTGCAGGAGATCATCCGTCTACCTATGAAGTTTCTTATTCTCTGTATCACCGTTTCTATCTTATTCCAACATTGTTCTTGCCTAAAGGTAATTTATTGATTATGTTGTTCTTAAACAGTTCATTATCTTAATTAGATCTCACTTAAGATCGCATTCATGAATTTGTTATTTGTTTTGGATATTTGATTAATCACAGATTGGAGAAACTTGTACCGACAGTAATTGTGATGAAGGATTAGTATGCTCTACTTGTCCTGCTAATGGCAATACCCGACCCAGATGTACTCGCATTCAACCCACTATTCCTACCACCAAGGTGAATTTCATATATTATAAGTCCAATTCTAACTATTTCATTTTTTTTCTTTTTTCATTAATGGTATATTGAATTTTTTACTTTTATTTGTGGTTGAAAGGTAAAAGGTTTGCCATTCAACAAGTATTCGTGGCTGACGACCCACAACTCCTTTGCAATTTCCGGGTCAACATCTGCAACTGGGTCTGATATTCTTGCTCCGACCAACCAGGAAGATTCCATTACTAATCAGCTCAAGGTGATTT--TCT-CTTTCTCTAATTATGAATTGAATATTTGAGGAATTTTAGTAGTTCAATTGATTGACTAGCTAAAT</genome_strand>
        <mrna_strand>GAGAGAAGAACCTCAGAGCCTACATGATGAAG........................................................................................................GAGATCATCCGTCTACCTATGAAGTTTCTTATTCTCTGTATCACCGTTTCTTTCTTATTCCAACATTGTTCTTGCCTAAAG.............................................................................................................ATTGGAGAAACTTGTACCGACAGTAATTGTGACGAAGGATTAGTCTGCTCTACTTGTCCTGCTAATGGCAATACCCGACCCAGATGTACTCGCATTCAACCCACTATTCCTACCACCAAG....................................................................................................GTAAAAGGTTTGCCATTCAACAAGTATTCGTGGCTGACGACCCACAACTCCTTTGCAATTTCCGGGTCAAAATCTGCAACTGGGTCTGATATTCTTGCTCCGACCAACCAGGAAGATTCCATTACTAATCAGCTCAAGGTGATTTGCTCTATTTTCTCTAATTATGAAATGAATATTTGAGGAATTTTAGTTGTTCAATTGATTAGCTAGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239987" ref_strand="+" ref_description="SGN-E239987 [cLED-29-P21]">
      <seq>agaacctcagagcctacatgatgaaggagatcatccgtctacctatgaagtttcttattctctgtatcaccgtttctatcttattccaacattgttcttgcctaaagattggagaaacttgtaccgacagtaattgtgatgaaggattagtatgctctacttgtcctgctaatggcaatacccgacccagatgtactcgcattcaacccactattcctaccaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="99977" stop="101015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100277" g_stop="100302" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100303" i_stop="100406" i_length="104">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100407" g_stop="100487" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="107" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100488" i_stop="100596" i_length="109">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100597" g_stop="100715" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="226" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E239987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100277" e_stop="100302"/>
          <exon e_start="100407" e_stop="100487"/>
          <exon e_start="100597" e_stop="100715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCTCAGAGCCTACATGATGAAGGCATGCAATCTCTTAATCTCAATTTCTTACTGCTAATTACTCTTAATTATCTCAAATTCTCATAATGAAAAAATCTTTGCATTTATTTATTTTCTATTTTGCAGGAGATCATCCGTCTACCTATGAAGTTTCTTATTCTCTGTATCACCGTTTCTATCTTATTCCAACATTGTTCTTGCCTAAAGGTAATTTATTGATTATGTTGTTCTTAAACAGTTCATTATCTTAATTAGATCTCACTTAAGATCGCATTCATGAATTTGTTATTTGTTTTGGATATTTGATTAATCACAGATTGGAGAAACTTGTACCGACAGTAATTGTGATGAAGGATTAGTATGCTCTACTTGTCCTGCTAATGGCAATACCCGACCCAGATGTACTCGCATTCAACCCACTATTCCTACCACCAA</genome_strand>
        <mrna_strand>AGAACCTCAGAGCCTACATGATGAAG........................................................................................................GAGATCATCCGTCTACCTATGAAGTTTCTTATTCTCTGTATCACCGTTTCTATCTTATTCCAACATTGTTCTTGCCTAAAG.............................................................................................................ATTGGAGAAACTTGTACCGACAGTAATTGTGATGAAGGATTAGTATGCTCTACTTGTCCTGCTAATGGCAATACCCGACCCAGATGTACTCGCATTCAACCCACTATTCCTACCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367935" ref_strand="+" ref_description="SGN-E367935 [TUS-22-D19]">
      <seq>agtaattgtgatgaaggattagtatgctctacttgtcctgctaatggcaatacccgacccagatgtactcgcattcaacccactattcctaccaccaaggtaaaaggtttgccattcaacaagtattcgtggctgacgacccacaactcctttgcaatttccgggtcaacatctgcaactgggtctgatattcttgctccgaccaaccaggaagattccattactaatcagctcaagaatggcgttcgaggacttatgcttgatatgtatgatttcaacaatgacatctggctttgtcactcatttggtgggaagtgttacaatgttacatcatttcaacctgcaatcaattcactgaaagaaattcaagggttcctcgaaaagaacccatcagaggtcgtcacaatcttcattgaagactatgtctcaaccccaaaggccttgagcaaggtttttaatgattctggtcttaataagtactggtttccaatttctcgtatgcccaaaaaaggagaagattggcctacagtggatgacatggtcaagcagaatcaacgtcttgtagtcttcacctctaaatcatcaaaggaggcttctgatggcattgcttatgagtggagatacgttgtagaaaaccaatatggaaatgacgggatgaaagaaggttcttgtccaagtcgttctgaatcatctgctttgagtacatcgggaatctctttggttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="100318" stop="102832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100618" g_stop="100716" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100717" i_stop="100816" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100817" g_stop="100954" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="237" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100955" i_stop="101568" i_length="614">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101569" g_stop="101667" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="336" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101668" i_stop="101775" i_length="108">
            <donor d_prob="0.609" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101776" g_stop="102079" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="640" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102080" i_stop="102445" i_length="366">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102446" g_stop="102532" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="727" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E367935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100618" e_stop="100716"/>
          <exon e_start="100817" e_stop="100954"/>
          <exon e_start="101569" e_stop="101667"/>
          <exon e_start="101776" e_stop="102079"/>
          <exon e_start="102446" e_stop="102532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTGTGATGAAGGATTAGTATGCTCTACTTGTCCTGCTAATGGCAATACCCGACCCAGATGTACTCGCATTCAACCCACTATTCCTACCACCAAGGTGAATTTCATATATTATAAGTCCAATTCTAACTATTTCATTTTTTTTCTTTTTTCATTAATGGTATATTGAATTTTTTACTTTTATTTGTGGTTGAAAGGTAAAAGGTTTGCCATTCAACAAGTATTCGTGGCTGACGACCCACAACTCCTTTGCAATTTCCGGGTCAACATCTGCAACTGGGTCTGATATTCTTGCTCCGACCAACCAGGAAGATTCCATTACTAATCAGCTCAAGGTGATTTTCTCTTTCTCTAATTATGAATTGAATATTTGAGGAATTTTAGTAGTTCAATTGATTGACTAGCTAAATGTAGCGTTCAAAAAGTTGTTGTGGAAGAAAAAAAGTTGAACAGCTGAATGTAATGGAATATCTAACTCTAAAAGATGAACTCTTTTAGGTACGAGAGAGAAAAAAGTCAGATTAGATTGGTAATATATAATTGCAAAAAACTCATATTTTACTTTGCTTAGGACATAAGCATGTGCTTTCACCTAACGATCTTATCAAAATTGTCCACATGCTAATGTCCTAATTTAGTTCTCAGTGGAGTCTATGTATCAAAATTATGAGATAAAATTGCTACCTTTATTCCCCACTACTTTTTCTATGTAAAGATCTTTCGAGCCTTGAAAGAATTTGTTTTTGGAAAATTCAGAGCTGTGTGATTCAACTAACCTGAGAATTACTTCAGTAAAAAAGTAAAATATGCTATCGGTAAATATATAGTGACCATTTCAGGAAGTACTCTGATTTTACTACGTTAACTTAAGCAGAGAAGTCATTAGCTTCTTAAGTTCTGATATTATTAAAGTGAAAACTCTGCTAAAGAAATTGATTGATATCTGTAGAATGGCGTTCGAGGACTTATGCTTGATATGTATGATTTCAACAATGACATCTGGCTTTGTCACTCATTTGGTGGGAAGTGTTACAATGTTACATCATTTGTAAGTTTACTAACACATATTGCTAGGTTTACTTGATTACCTGATTCGGTACTCATATAGCATTCTTGTTATTGCTGATTGGTGCAACTTACTTTCTGGATGATTCAGCAACCTGCAATCAATTCACTGAAAGAAATTCAAGGGTTCCTCGAAAAGAACCCATCAGAGGTCGTCACAATCTTCATTGAAGACTATGTCTCAACCCCAAAGGCCTTGAGCAAGGTTTTTAATGATTCTGGTCTTAATAAGTACTGGTTTCCAATTTCTCGTATGCCCAAAAAAGGAGAAGATTGGCCTACAGTGGATGACATGGTCAAGCAGAATCAACGTCTTGTAGTCTTCACCTCTAAATCATCAAAGGAGGCTTCTGATGGCATTGCTTATGAGTGGAGATACGTTGTAGAAAACCAATGTGAGTTAACAGCTTTTGTCTAATTTGATGCTTATGTTGCTTTCCGCTTTCCTGGTATGACATACTTAGTGAATCTAGAATTGTTTACATTCGCGATTTAATTAGCAGCTCCTGTGAGATCAACTTATGTTGAATTGCATTTAATTTTCAAGTATTTGAAGAGGCAAATGCTTCAGAACTAGTCTAGGAGCCTTATGCCAATTAACATCGTTTTTTGGTTTCTGAATGACATAAGTTGGTCCTTGAGTAAATTTTCTTATATTTGCAAGTTGCAACTTCACTTGCTCATCTTTCTTACATTTGGTATCATCAGACATGGTTGCTCAAACTATTGATGACTTGACATGTTTACTGTATGTTCTGCAGATGGAAATGACGGGATGAAAGAAGGTTCTTGTCCAAGTCGTTCTGAATCATCTGCTTTGAGTACATCGGGAATCTCTTTGGTTCTGC</genome_strand>
        <mrna_strand>AGTAATTGTGATGAAGGATTAGTATGCTCTACTTGTCCTGCTAATGGCAATACCCGACCCAGATGTACTCGCATTCAACCCACTATTCCTACCACCAAG....................................................................................................GTAAAAGGTTTGCCATTCAACAAGTATTCGTGGCTGACGACCCACAACTCCTTTGCAATTTCCGGGTCAACATCTGCAACTGGGTCTGATATTCTTGCTCCGACCAACCAGGAAGATTCCATTACTAATCAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCGTTCGAGGACTTATGCTTGATATGTATGATTTCAACAATGACATCTGGCTTTGTCACTCATTTGGTGGGAAGTGTTACAATGTTACATCATTT............................................................................................................CAACCTGCAATCAATTCACTGAAAGAAATTCAAGGGTTCCTCGAAAAGAACCCATCAGAGGTCGTCACAATCTTCATTGAAGACTATGTCTCAACCCCAAAGGCCTTGAGCAAGGTTTTTAATGATTCTGGTCTTAATAAGTACTGGTTTCCAATTTCTCGTATGCCCAAAAAAGGAGAAGATTGGCCTACAGTGGATGACATGGTCAAGCAGAATCAACGTCTTGTAGTCTTCACCTCTAAATCATCAAAGGAGGCTTCTGATGGCATTGCTTATGAGTGGAGATACGTTGTAGAAAACCAAT..............................................................................................................................................................................................................................................................................................................................................................................ATGGAAATGACGGGATGAAAGAAGGTTCTTGTCCAAGTCGTTCTGAATCATCTGCTTTGAGTACATCGGGAATCTCTTTGGTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238316" ref_strand="+" ref_description="SGN-E238316 [cLED-17-I19]">
      <seq>agtaattgtgatgaaggattagtatgctctacttgttctgctaatggcaatacccgacccagatgtactcgcattcaacccactattcctaccaccaaggtaaaaggtttgccattcaacaagtattcgtggctgacgacccacaactcctttgcaatttccgggtcaacatctgcaactgggtctgatattcttgctccgaccaaccaggaagattccattactaatcagctcaagaatggcgttcgaggacttatgcttgatatgtatgatttcaacaatgacatctggctttgtcactcatttggtgggaagtgttacaatgttacatcatttcaacctgcaatcaattcactgaaagaaattcaagggttcctcgaaaagaacccatcagaggtcgtcacaatcttcattgaagactatgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="100318" stop="102167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100618" g_stop="100716" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100717" i_stop="100816" i_length="100">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100817" g_stop="100954" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="237" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100955" i_stop="101568" i_length="614">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101569" g_stop="101667" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="336" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101668" i_stop="101775" i_length="108">
            <donor d_prob="0.609" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101776" g_stop="101867" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="428" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E238316" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100618" e_stop="100716"/>
          <exon e_start="100817" e_stop="100954"/>
          <exon e_start="101569" e_stop="101667"/>
          <exon e_start="101776" e_stop="101867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTGTGATGAAGGATTAGTATGCTCTACTTGTCCTGCTAATGGCAATACCCGACCCAGATGTACTCGCATTCAACCCACTATTCCTACCACCAAGGTGAATTTCATATATTATAAGTCCAATTCTAACTATTTCATTTTTTTTCTTTTTTCATTAATGGTATATTGAATTTTTTACTTTTATTTGTGGTTGAAAGGTAAAAGGTTTGCCATTCAACAAGTATTCGTGGCTGACGACCCACAACTCCTTTGCAATTTCCGGGTCAACATCTGCAACTGGGTCTGATATTCTTGCTCCGACCAACCAGGAAGATTCCATTACTAATCAGCTCAAGGTGATTTTCTCTTTCTCTAATTATGAATTGAATATTTGAGGAATTTTAGTAGTTCAATTGATTGACTAGCTAAATGTAGCGTTCAAAAAGTTGTTGTGGAAGAAAAAAAGTTGAACAGCTGAATGTAATGGAATATCTAACTCTAAAAGATGAACTCTTTTAGGTACGAGAGAGAAAAAAGTCAGATTAGATTGGTAATATATAATTGCAAAAAACTCATATTTTACTTTGCTTAGGACATAAGCATGTGCTTTCACCTAACGATCTTATCAAAATTGTCCACATGCTAATGTCCTAATTTAGTTCTCAGTGGAGTCTATGTATCAAAATTATGAGATAAAATTGCTACCTTTATTCCCCACTACTTTTTCTATGTAAAGATCTTTCGAGCCTTGAAAGAATTTGTTTTTGGAAAATTCAGAGCTGTGTGATTCAACTAACCTGAGAATTACTTCAGTAAAAAAGTAAAATATGCTATCGGTAAATATATAGTGACCATTTCAGGAAGTACTCTGATTTTACTACGTTAACTTAAGCAGAGAAGTCATTAGCTTCTTAAGTTCTGATATTATTAAAGTGAAAACTCTGCTAAAGAAATTGATTGATATCTGTAGAATGGCGTTCGAGGACTTATGCTTGATATGTATGATTTCAACAATGACATCTGGCTTTGTCACTCATTTGGTGGGAAGTGTTACAATGTTACATCATTTGTAAGTTTACTAACACATATTGCTAGGTTTACTTGATTACCTGATTCGGTACTCATATAGCATTCTTGTTATTGCTGATTGGTGCAACTTACTTTCTGGATGATTCAGCAACCTGCAATCAATTCACTGAAAGAAATTCAAGGGTTCCTCGAAAAGAACCCATCAGAGGTCGTCACAATCTTCATTGAAGACTATGTCTC</genome_strand>
        <mrna_strand>AGTAATTGTGATGAAGGATTAGTATGCTCTACTTGTTCTGCTAATGGCAATACCCGACCCAGATGTACTCGCATTCAACCCACTATTCCTACCACCAAG....................................................................................................GTAAAAGGTTTGCCATTCAACAAGTATTCGTGGCTGACGACCCACAACTCCTTTGCAATTTCCGGGTCAACATCTGCAACTGGGTCTGATATTCTTGCTCCGACCAACCAGGAAGATTCCATTACTAATCAGCTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCGTTCGAGGACTTATGCTTGATATGTATGATTTCAACAATGACATCTGGCTTTGTCACTCATTTGGTGGGAAGTGTTACAATGTTACATCATTT............................................................................................................CAACCTGCAATCAATTCACTGAAAGAAATTCAAGGGTTCCTCGAAAAGAACCCATCAGAGGTCGTCACAATCTTCATTGAAGACTATGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418749" ref_strand="+" ref_description="SGN-E418749 [STM-28-C16]">
      <seq>tcaattttccgtttcatttcattgtgccattatgtgtctatacacattttaattgtaaacacatcaatcaatatccgataagtgaagaaactcaaccagtaaatacaagataaattttttaaaaataaaagataagatggatcgtgtcattctgctcccgtgttatgaagtgtgtctgatctgaaaatttgagtagagactttggagaatgcagaaattatacgtggataagaagaatcgcggcaaaaattgtgccaatcaaccaatgaagtggtttacttctgtttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="103673" stop="102786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103373" g_stop="103086" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E418749" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103373" e_stop="103086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTTCCGTTTCATTTCATTGTGCCATTATGTGTCTATACACATTTTAATTGTAAA-ACA--AATCAATCTCCGATAAGTGAAGAAACTCAACCAGTAAACACAAGATAAATAAAAAATAAATAAAAGATAAGGAGGATCGTGTCATTCTGCTCCCGTGTTATGAAGTGTGTGTCTGGTCTGAAAATTTGAGTAGAGACTTTGGAGAATGCAG-AATTATACGTGGATAAGAAGAATCGCGGCAAAAATTGTGCAAATCAACCAATGAAGTGGTTTACTTCTGTTTGAA</genome_strand>
        <mrna_strand>TCAATTTTCCGTTTCATTTCATTGTGCCATTATGTGTCTATACACATTTTAATTGTAAACACATCAATCAATATCCGATAAGTGAAGAAACTCAACCAGTAAATACAAGATAAATTTTTTAAAAATAAAAGATAAGATGGATCGTGTCATTCTGCTCCCGTGTTATGAA--GTGTGTCTGATCTGAAAATTTGAGTAGAGACTTTGGAGAATGCAGAAATTATACGTGGATAAGAAGAATCGCGGCAAAAATTGTGCCAATCAACCAATGAAGTGGTTTACTTCTGTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315335" ref_strand="+" ref_description="SGN-E315335 [cTOA-24-B16]">
      <seq>cttagccaaatactgtccggcgggtcctgtgaagatgtcattgaatcaatacataatgcacttatgaaggtacaagagcaaatgaggactggccaaattgagctggaaaaatacgtgatcaccaaatcattgactaaacctcctgaagcctatcctgatgctaaaagtcaacctcacgttgaagtagcactcaggttgaagaaaagtggctatgttactggttgctctgctggtgatacagtaccatatgtcatctgttgtgaacagggtaatggttcaactacctctgtgggaattgctcagcgggcaagacatcctgatgaactgaaaagagacaatggaaactggatagtagacattgattattaccttgcccaacagatacatcctgtaatatcccgtctatgtgcgtcaattcagggtactagcccagcacgtctggctgattgcttaggactagattcatccaagttccaaaataaatcaagtgaagctgtcaatgatgatccctcaaatgcacttttatgtgtagctgatgatgaagagagatttcggggttgtgagcctttgactttgacatgccccagctgctcctgctcttttgagtgtgcacctatatttagttccatatgttcatcaattaggcaaaatccagcagacttgcaagtaggagagtctgccagcaaagtctgggaaagatttagttgtcccaaatgcccagaggagagtgaggggaatatatcttcggcattgatagcaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="114210" stop="116850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114510" g_stop="114532" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114533" i_stop="114624" i_length="92">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114625" g_stop="114670" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="69" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114671" i_stop="115176" i_length="506">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115177" g_stop="115290" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="183" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115291" i_stop="115372" i_length="82">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115373" g_stop="115456" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="267" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115457" i_stop="115553" i_length="97">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115554" g_stop="115667" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="381" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115668" i_stop="115777" i_length="110">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.181" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="115778" g_stop="115867" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="471" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="115868" i_stop="115951" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115952" g_stop="116028" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="548" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="116029" i_stop="116335" i_length="307">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="116336" g_stop="116550" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="763" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E315335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114510" e_stop="114532"/>
          <exon e_start="114625" e_stop="114670"/>
          <exon e_start="115177" e_stop="115290"/>
          <exon e_start="115373" e_stop="115456"/>
          <exon e_start="115554" e_stop="115667"/>
          <exon e_start="115778" e_stop="115867"/>
          <exon e_start="115952" e_stop="116028"/>
          <exon e_start="116336" e_stop="116550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGCCAAATACTGTCCGGCGGGTACATCTTGCTGTGAACTTGTTTCTTCTCTTCATATCATCATACTTGTGATTGCTCAGTCTGAATGATTTACATGTCTTTAATGGTGGCAGGTCCTGTGAAGATGTCATTGAATCAATACATAATGCACTTATGAAGGTATCACTCTCAATGATATTGAAAATCATAAGCCAGGAGCTGCAATGGCTCTGCAGCTTTCATATTGAATGCGGTTTAGTTTATATTGCAGGCTATATTCTTGATCAAAAAAATTTATAGGCTACTCTTTAGGATTGAGAATATTTCCAGGAGTGACTCTTAGCTTATGGCTTCTTTTCATGGAGTTCCACCAGTAGGGTTCCCCCTCCCCCCAGCCAGTCTCCCCCCACTGGCTCTCCTTACCTCAATCATTGAGCAGCTACTGCTTTCTACCATAAATCCTCTGTGTATCTCCACTATTGTCTTGCTAGTGCATTGTTCCGAAATTTGCTGGGCAGCCTGGAATCTTCATATACAGTCAGTCTTCTTCATTCTGGTTGAAGGAAAATCCAGCTGCTACTCTTAGCACCTGGAGAGGCAATCAGCTCATTTTAGTTTGATTTTTGTGATGTAGGCCTATTACTAGTTTCCTATGATTATTCTTGAATTTCTCTGATCTACTGCAGGTACAAGAGCAAATGAGGACTGGCCAAATTGAGCTGGAAAAATACGTGATCACCAAATCATTGACTAAACCTCCTGAAGCCTATCCTGATGCTAAAAGTCAACCTCACGTTGAAGTAAGTTTTAAGAAGTCTTTGATCAATTCATGTCTCAGACTAAGGAACTGAGAGTTAATATTGTCATCCTCTACATCTGTAGGTAGCACTCAGGTTGAAGAAAAGTGGCTATGTTACTGGTTGCTCTGCTGGTGATACAGTACCATATGTCATCTGTTGTGAACAGGTTTATTTCCTATTATTAATGGTCCAATACGATGAAATCCAGTTTTTCTCTTTTGGTTTCTGTTGTCTTAACATGCAGGTGTTACACACACTTGCAGGGTAATGGTTCAACTACCTCTGTGGGAATTGCTCAGCGGGCAAGACATCCTGATGAACTGAAAAGAGACAATGGAAACTGGATAGTAGACATTGATTATTACCTTGCCCAACAGGTCTTCGTAGTCTACTTATTTTGATCTTCAATTTTAAATCGCTATCGTTGGTTCTTATGCGTGCATATCTCGCGACTCCACCTAACTGTGAACCATTTTCAATGTCACAGATACATCCTGTAATATCCCGTCTATGTGCGTCAATTCAGGGTACTAGCCCAGCACGTCTGGCTGATTGCTTAGGACTAGATTCATCCAAGGTAAATAGCAACTTTTCAAAACGGACATTAATTCAACATGACATGATTTTGAAAAATAGCTTAAGGGTTTGACTTTTCCTTCAGTTCCAAAATAAATCAAGTGAAGCTGTCAATGATGATCCCTCAAATGCACTTTTATGTGTAGCTGATGATGAAGAGAGGTAATTGATCTCTTTCAGAGAAAGTTTACCTTTCCTTTTATCTTTTGTTCAGGTTGAAGATGCTTTTCTTTCATATACTCAACTCATCCTAATTACTGTTTTGTGCAATCTCAGTCTTTCCTCGTTCTCTCTCTTATTTCTTTGAACTCTTATTTGTTTCAATTTTCTTTATGGTATCAGTTTCCTTCCACACTTTTTCTGCTTCACCTCTCTACCCCCCTAACTTTCCCATTTTTTTGTTCACATTTTGATATGCTAACTTCTCCACTGTATGAACATATTTTTCTTCTGACAATGCAAAATGCAGATTTCGGGGTTGTGAGCCTTTGACTTTGACATGCCCCAGCTGCTCCTGCTCTTTTGAGTGTGCACCTATATTTAGTTCCATATGTTCATCAATTAGGCAAAATCCAGCAGACTTGCAAGTAGGAGAGTCTGCCAGCAAAGTCTGGGAAAGATTTAGTTGTCCCAAATGCCCAGAGGAGAGTGAGGGGAATATATCTTCGGCATTGATAGCAAACC</genome_strand>
        <mrna_strand>CTTAGCCAAATACTGTCCGGCGG............................................................................................GTCCTGTGAAGATGTCATTGAATCAATACATAATGCACTTATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGAGCAAATGAGGACTGGCCAAATTGAGCTGGAAAAATACGTGATCACCAAATCATTGACTAAACCTCCTGAAGCCTATCCTGATGCTAAAAGTCAACCTCACGTTGAA..................................................................................GTAGCACTCAGGTTGAAGAAAAGTGGCTATGTTACTGGTTGCTCTGCTGGTGATACAGTACCATATGTCATCTGTTGTGAACAG.................................................................................................GGTAATGGTTCAACTACCTCTGTGGGAATTGCTCAGCGGGCAAGACATCCTGATGAACTGAAAAGAGACAATGGAAACTGGATAGTAGACATTGATTATTACCTTGCCCAACAG..............................................................................................................ATACATCCTGTAATATCCCGTCTATGTGCGTCAATTCAGGGTACTAGCCCAGCACGTCTGGCTGATTGCTTAGGACTAGATTCATCCAAG....................................................................................TTCCAAAATAAATCAAGTGAAGCTGTCAATGATGATCCCTCAAATGCACTTTTATGTGTAGCTGATGATGAAGAGAG...................................................................................................................................................................................................................................................................................................................ATTTCGGGGTTGTGAGCCTTTGACTTTGACATGCCCCAGCTGCTCCTGCTCTTTTGAGTGTGCACCTATATTTAGTTCCATATGTTCATCAATTAGGCAAAATCCAGCAGACTTGCAAGTAGGAGAGTCTGCCAGCAAAGTCTGGGAAAGATTTAGTTGTCCCAAATGCCCAGAGGAGAGTGAGGGGAATATATCTTCGGCATTGATAGCAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232778" ref_strand="+" ref_description="SGN-E232778 [cLED-8-B10]">
      <seq>tcaattcagggtactagcccagcacgtctggctgattgcttaggactagattcatccaagttccaaaataaatcaagtgaagctgtcaatgatgatccctcaaatgcacttttatgtgtagctgatgatgaagagagatttcggggttgtgagcctttgactttgacatgccccagctgctcctgctcttttgagtgtgcacctatatttagttccatatgttcatcaattaggcaaaatccagcagacttgcaagtaggagagtctgccagcaaagtctgggaaagatttagttgtcccaaatgcccagaggagagtgaggggaatatatcttcggcattgatagcaaaccaggttaaaaggcaagtagaaggctttatttcaacatattacaaaggagttatgatgtgcgatgatgaaacctgcaactacaccactcgtagcctgaacctgcgagtaattggggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="115508" stop="117599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115808" g_stop="115867" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115868" i_stop="115951" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115952" g_stop="116028" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="137" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116029" i_stop="116335" i_length="307">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116336" g_stop="116552" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="354" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116553" i_stop="117099" i_length="547">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117100" g_stop="117153" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="408" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117154" i_stop="117237" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117238" g_stop="117299" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="470" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E232778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115808" e_stop="115867"/>
          <exon e_start="115952" e_stop="116028"/>
          <exon e_start="116336" e_stop="116552"/>
          <exon e_start="117100" e_stop="117153"/>
          <exon e_start="117238" e_stop="117299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCAGGGTACTAGCCCAGCACGTCTGGCTGATTGCTTAGGACTAGATTCATCCAAGGTAAATAGCAACTTTTCAAAACGGACATTAATTCAACATGACATGATTTTGAAAAATAGCTTAAGGGTTTGACTTTTCCTTCAGTTCCAAAATAAATCAAGTGAAGCTGTCAATGATGATCCCTCAAATGCACTTTTATGTGTAGCTGATGATGAAGAGAGGTAATTGATCTCTTTCAGAGAAAGTTTACCTTTCCTTTTATCTTTTGTTCAGGTTGAAGATGCTTTTCTTTCATATACTCAACTCATCCTAATTACTGTTTTGTGCAATCTCAGTCTTTCCTCGTTCTCTCTCTTATTTCTTTGAACTCTTATTTGTTTCAATTTTCTTTATGGTATCAGTTTCCTTCCACACTTTTTCTGCTTCACCTCTCTACCCCCCTAACTTTCCCATTTTTTTGTTCACATTTTGATATGCTAACTTCTCCACTGTATGAACATATTTTTCTTCTGACAATGCAAAATGCAGATTTCGGGGTTGTGAGCCTTTGACTTTGACATGCCCCAGCTGCTCCTGCTCTTTTGAGTGTGCACCTATATTTAGTTCCATATGTTCATCAATTAGGCAAAATCCAGCAGACTTGCAAGTAGGAGAGTCTGCCAGCAAAGTCTGGGAAAGATTTAGTTGTCCCAAATGCCCAGAGGAGAGTGAGGGGAATATATCTTCGGCATTGATAGCAAACCAGGTATGTGTTTTGACTTTCAACTGAACTTTGTACAATTATGTCAACTACTTTTTGTCCTCTGCTTTCTGTCATCTAAAATGTTGGAACACGTAATCATGTAGAACTGCCTTAGTACTGTCGATTTTCTTTACAACTGATATGATTTCGTTCTCAGTATGAGTATAGATGGCCATGAATTGTTTTCAGCCTTTAGGTTGTCTTGTGGTTACACCAAGTCACCTACAAGACTAACATCTCTAGATTCTCTCAATTGAAACCTTTACTTTTGTGGTTCTCTTGGTGTCATTTTAGCCTTCTTCCCCCAAATTAGTGAACCAGGTTCATTTTTCTTGCGTTCTCAACCTTCCATTTCCATGTTTCCACTTGTCTTTGGCAATCATCATCTTTTTGAAGTCAGAACCGTGTGTTAAATACACTTATTTAAGGATATTTTGTGTTATTTTCTCGTTCTTTTGAAGAAGGATCTCGATTTACATATATACAATATGTAAGTAGTGACAGGCTGGTATGTACGCTTAGATTCGTGTTGTCATGTCACCCTTGACAGGTTAAAAGGCAAGTAGAAGGCTTTATTTCAACATATTACAAAGGAGTTATGATGGTATGTGCTTAAATATTTTACAGCTATTGCTTTGATGAGCTTGCTGGACAGCACAGTTAACTAAAGCTATTTTGTTCTGTTCAGTGCGATGATGAAACCTGCAACTACACCACTCGTAGCCTGAACCTGCGAGTAATTGGGGACTC</genome_strand>
        <mrna_strand>TCAATTCAGGGTACTAGCCCAGCACGTCTGGCTGATTGCTTAGGACTAGATTCATCCAAG....................................................................................TTCCAAAATAAATCAAGTGAAGCTGTCAATGATGATCCCTCAAATGCACTTTTATGTGTAGCTGATGATGAAGAGAG...................................................................................................................................................................................................................................................................................................................ATTTCGGGGTTGTGAGCCTTTGACTTTGACATGCCCCAGCTGCTCCTGCTCTTTTGAGTGTGCACCTATATTTAGTTCCATATGTTCATCAATTAGGCAAAATCCAGCAGACTTGCAAGTAGGAGAGTCTGCCAGCAAAGTCTGGGAAAGATTTAGTTGTCCCAAATGCCCAGAGGAGAGTGAGGGGAATATATCTTCGGCATTGATAGCAAACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAGGCAAGTAGAAGGCTTTATTTCAACATATTACAAAGGAGTTATGATG....................................................................................TGCGATGATGAAACCTGCAACTACACCACTCGTAGCCTGAACCTGCGAGTAATTGGGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284529" ref_strand="+" ref_description="SGN-E284529 [cLES-3-I22]">
      <seq>taggactagattcatccaagttccaaaataaatcaagtgaagctgtcaatgatgatccctcaaatgcacttttatgtgtagctgatgatgaagagagatttcggggttgtgagcctttgactttgacatgccccagctgctcctgctcttttgagtgtgcacctatatttagttccatatgttcatcaattaggcaaaatccagcagacttgcaagtaggagagtctgccagcaaagtctgggaaagatttagttgtcccaaatgcccagaggagagtgaggggaatatatcttcggcattgatagcaaaccaggttaaaaggcaagtagaaggctttatttcaacatattacaaaggagttatgatgtgcgatgatgaaacctgcaactacaccactcgtagcctgaacctgcgagtaattggggactcagagagaggaactgtttgtccaaattatcctcgttgtaatggacacttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="+" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="115643" stop="117651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115848" g_stop="115867" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115868" i_stop="115951" i_length="84">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115952" g_stop="116028" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="97" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116029" i_stop="116335" i_length="307">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116336" g_stop="116552" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="314" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116553" i_stop="117099" i_length="547">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117100" g_stop="117153" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="368" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117154" i_stop="117237" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117238" g_stop="117351" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="482" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="+" ref_id="SGN-E284529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115848" e_stop="115867"/>
          <exon e_start="115952" e_stop="116028"/>
          <exon e_start="116336" e_stop="116552"/>
          <exon e_start="117100" e_stop="117153"/>
          <exon e_start="117238" e_stop="117351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGACTAGATTCATCCAAGGTAAATAGCAACTTTTCAAAACGGACATTAATTCAACATGACATGATTTTGAAAAATAGCTTAAGGGTTTGACTTTTCCTTCAGTTCCAAAATAAATCAAGTGAAGCTGTCAATGATGATCCCTCAAATGCACTTTTATGTGTAGCTGATGATGAAGAGAGGTAATTGATCTCTTTCAGAGAAAGTTTACCTTTCCTTTTATCTTTTGTTCAGGTTGAAGATGCTTTTCTTTCATATACTCAACTCATCCTAATTACTGTTTTGTGCAATCTCAGTCTTTCCTCGTTCTCTCTCTTATTTCTTTGAACTCTTATTTGTTTCAATTTTCTTTATGGTATCAGTTTCCTTCCACACTTTTTCTGCTTCACCTCTCTACCCCCCTAACTTTCCCATTTTTTTGTTCACATTTTGATATGCTAACTTCTCCACTGTATGAACATATTTTTCTTCTGACAATGCAAAATGCAGATTTCGGGGTTGTGAGCCTTTGACTTTGACATGCCCCAGCTGCTCCTGCTCTTTTGAGTGTGCACCTATATTTAGTTCCATATGTTCATCAATTAGGCAAAATCCAGCAGACTTGCAAGTAGGAGAGTCTGCCAGCAAAGTCTGGGAAAGATTTAGTTGTCCCAAATGCCCAGAGGAGAGTGAGGGGAATATATCTTCGGCATTGATAGCAAACCAGGTATGTGTTTTGACTTTCAACTGAACTTTGTACAATTATGTCAACTACTTTTTGTCCTCTGCTTTCTGTCATCTAAAATGTTGGAACACGTAATCATGTAGAACTGCCTTAGTACTGTCGATTTTCTTTACAACTGATATGATTTCGTTCTCAGTATGAGTATAGATGGCCATGAATTGTTTTCAGCCTTTAGGTTGTCTTGTGGTTACACCAAGTCACCTACAAGACTAACATCTCTAGATTCTCTCAATTGAAACCTTTACTTTTGTGGTTCTCTTGGTGTCATTTTAGCCTTCTTCCCCCAAATTAGTGAACCAGGTTCATTTTTCTTGCGTTCTCAACCTTCCATTTCCATGTTTCCACTTGTCTTTGGCAATCATCATCTTTTTGAAGTCAGAACCGTGTGTTAAATACACTTATTTAAGGATATTTTGTGTTATTTTCTCGTTCTTTTGAAGAAGGATCTCGATTTACATATATACAATATGTAAGTAGTGACAGGCTGGTATGTACGCTTAGATTCGTGTTGTCATGTCACCCTTGACAGGTTAAAAGGCAAGTAGAAGGCTTTATTTCAACATATTACAAAGGAGTTATGATGGTATGTGCTTAAATATTTTACAGCTATTGCTTTGATGAGCTTGCTGGACAGCACAGTTAACTAAAGCTATTTTGTTCTGTTCAGTGCGATGATGAAACCTGCAACTACACCACTCGTAGCCTGAACCTGCGAGTAATTGGGGACTCAGAGAGAGGAACTGTTTGTCCAAATTATCCTCGTTGTAATGGACACTTACTA</genome_strand>
        <mrna_strand>TAGGACTAGATTCATCCAAG....................................................................................TTCCAAAATAAATCAAGTGAAGCTGTCAATGATGATCCCTCAAATGCACTTTTATGTGTAGCTGATGATGAAGAGAG...................................................................................................................................................................................................................................................................................................................ATTTCGGGGTTGTGAGCCTTTGACTTTGACATGCCCCAGCTGCTCCTGCTCTTTTGAGTGTGCACCTATATTTAGTTCCATATGTTCATCAATTAGGCAAAATCCAGCAGACTTGCAAGTAGGAGAGTCTGCCAGCAAAGTCTGGGAAAGATTTAGTTGTCCCAAATGCCCAGAGGAGAGTGAGGGGAATATATCTTCGGCATTGATAGCAAACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAGGCAAGTAGAAGGCTTTATTTCAACATATTACAAAGGAGTTATGATG....................................................................................TGCGATGATGAAACCTGCAACTACACCACTCGTAGCCTGAACCTGCGAGTAATTGGGGACTCAGAGAGAGGAACTGTTTGTCCAAATTATCCTCGTTGTAATGGACACTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349854" ref_strand="+" ref_description="SGN-E349854 [cTOS-3-H9]">
      <seq>tcagtgtgagtgcaaagttgtatgatttcatccatttcctctggctcaatgaagcacctgttggagagttgcagtgaaccatgaatgagaagtttgggagtcttctaggtttcttgtgcatctttttcatcatgtaaactgaaattttacataaagttattaaccaaagagaagtccgttctttactttttccccccagtgatgttccgaggcaattgtataagcttccttggaagtttgtaaaggtcaataaaagtgcatttgtattttcctctcaattgagtcctcagaaatgcgtggataaaactgggtgaaacccatgtgcaccttatagttgtgattaatgtaactgagccaaattattgtgactagaaaaggtttcagtaatgattatggaatttcattcttctgaaattgctctgctagttggttctccttgccaactacacatttttcaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="118588" stop="117527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118288" g_stop="117817" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E349854" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118288" e_stop="117817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAGCACCTGTTGGAGAGTTGCAGTGAACCATGAATGAGAAGTTTGGGAGTCTTCTAGGTTTCTTGTGCATCTTTTTCATCATGTAAACTGAAATTTTACATAAAGTTATTAACCAAAGAGAAGTCCGTTCTTTACTTTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAATTGCTCTGCTAGTTGGTTCTCCTTGCCAACTACACATTTTTCAAACAATTTACACTGG</genome_strand>
        <mrna_strand>TCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAGCACCTGTTGGAGAGTTGCAGTGAACCATGAATGAGAAGTTTGGGAGTCTTCTAGGTTTCTTGTGCATCTTTTTCATCATGTAAACTGAAATTTTACATAAAGTTATTAACCAAAGAGAAGTCCGTTCTTTACTTTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAATTGCTCTGCTAGTTGGTTCTCCTTGCCAACTACACATTTTTCAAACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373738" ref_strand="+" ref_description="SGN-E373738 [TUS-31-A22]">
      <seq>ttttccccccagtgatgttccgaggcaattgtataagcttccttggaagtttgtaaaggtcaataaaagtgcatttgtattttcctctcaattgagtcctcagaaatgcgtggataaaactgggtgaaacccatgtgcaccttatagttgtgattaatgtaactgagccaaattattgtgactagaaaaggtttcagtaatgattatggaatttcattcttctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="118401" stop="117575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118101" g_stop="117868" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E373738" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118101" e_stop="117868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAATTGCTCT</genome_strand>
        <mrna_strand>TTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373737" ref_strand="+" ref_description="SGN-E373737 [TUS-31-A22](-)">
      <seq>tttttccccccagtgatgttccgaggcaattgtataagcttccttggaagtttgtaaaggtcaataaaagtgcatttgtattttcctctcaattgagtcctcagaaatgcgtggataaaactgggtgaaacccatgtgcaccttatagttgtgattaatgtaactgagccaaattattgtgactagaaaaggtttcagtaatgattatggaatttcattcttctgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="118402" stop="117575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118102" g_stop="117869" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E373737" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118102" e_stop="117869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAATTGCTC</genome_strand>
        <mrna_strand>TTTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289090" ref_strand="+" ref_description="SGN-E289090 [cLES-18-G4]">
      <seq>ttttccccccagtgatgttccgaggcaattgtataagcttccttggaagtttgtaaaggtcaataaaagtgcatttgtattttcctctcaattgagtcctcagaaatgcgtggataaaactgggtgaaacccatgtgcaccttatagttgtgattaatgtaactgagccaaattattgtgactagaaaaggtttcagtaatgattatggaatttcattcttctgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="118401" stop="117575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118101" g_stop="117870" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E289090" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118101" e_stop="117870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAATTGCT</genome_strand>
        <mrna_strand>TTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354223" ref_strand="+" ref_description="SGN-E354223 [cTOS-16-G10]">
      <seq>atcaaactctctgaagacgtatcaaaggtctctattccatgcaaaaagcggtgttacagattgtatgggaaggaagggtacccccttgtagacataatgactggtgaaaatgagccacatcccaaggtaggtgaacgaattttatgccgccacccatttagtgaatctaaaagggcatacgtagtgccccagcgtgttgaggaacttttaaagtgtttttggcccggaaagtcagctaaaacaagagaagaccttcctcctctgaaggagatcagggaaagatgtattgcacaactggaccaaatgcgaccagatcacatgagaaggctgaacccaacaccatacaagtgtgagtgcaaagttgtatgatttcatccatttcctctggctcaatgaagcacctgttggagagttgcagtgaaccatgaatgagaagtttgggagtcttctaggtttcttgtgcatctttttcatcatgtaaactgaaattttacataaagttattaaccaaagagaagtccgttctttactttttccccccagtgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="119615" stop="117784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119315" g_stop="119289" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119288" i_stop="119218" i_length="71">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119217" g_stop="119119" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="126" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119118" i_stop="118975" i_length="144">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118974" g_stop="118866" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="235" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118865" i_stop="118637" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118636" g_stop="118524" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="348" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118523" i_stop="118285" i_length="239">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.502" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118284" g_stop="118084" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="549" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E354223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119315" e_stop="119289"/>
          <exon e_start="119217" e_stop="119119"/>
          <exon e_start="118974" e_stop="118866"/>
          <exon e_start="118636" e_stop="118524"/>
          <exon e_start="118284" e_stop="118084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTCTCTGAAGACGTATCAAAGGTCTGCCAAAGCTATGGATACTCATTTGGTATTTAGATTCAGTGTGGAAGTTCATAATTTCTTGTTTCTAGGTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAGGTGATTTATGAGGCTTGCTTACTGATCTTCTAGTAGTTCTTTGTGCTATTTCATCCATTGTCAATTCTAATTTAGAAATTAGATAAGCTTCATTGGTACCAAAAAACAGATAATGGACAACTTTTTTTTCCTGCAACTTGACAGGTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAGGTAAGAGCTGTTATCCCTATATTGTATTAATGTTAGTTTGAATTATTCGTATTTCTACCAGAAGCATGACCCTACTTTTCCATAGACTCCAAATTATTGAGTGAAGCCCCTGTTGCCTGTTGGTAACATTTTTAAGTTACAGTGAGATATTAAAAAATGACTAGTTCAGTTCAGCTGCTCCTTAAGTTAATAAGTGTTGACTAATGGATGGTGGTTTGTCATTCTGAAGCTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAGGTAAGTACCAATTGTTCTCTTTTTTCTCTCAATTAAAAATTTTAAAAGGAAATTGGGGAGGGGGGGGGGGGTAGTAGTCAGGGGAAATGGAGTCAAATCCCCTCACCAACCAAGTGAAAGTTCAGATAGCCAACAAACTAAGCTACTAAGGTGACCTAAATTATACTAGTATGTCTAGGCTGAAGTGCTTTTTCTTTTCAGGTTGTCAGTTTTGATTGAATTTTTGTTGTGCAGGTCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAGCACCTGTTGGAGAGTTGCAGTGAACCATGAATGAGAAGTTTGGGAGTCTTCTAGGTTTCTTGTGCATCTTTTTCATCATGTAAACTGAAATTTTACATAAAGTTATTAACCAAAGAGAAGTCCGTTCTTTACTTTTTCCCCCCAGTGATGT</genome_strand>
        <mrna_strand>ATCAAACTCTCTGAAGACGTATCAAAG.......................................................................GTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAG................................................................................................................................................GTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAG.....................................................................................................................................................................................................................................CTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAG...............................................................................................................................................................................................................................................TGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAGCACCTGTTGGAGAGTTGCAGTGAACCATGAATGAGAAGTTTGGGAGTCTTCTAGGTTTCTTGTGCATCTTTTTCATCATGTAAACTGAAATTTTACATAAAGTTATTAACCAAAGAGAAGTCCGTTCTTTACTTTTTCCCCCCAGTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700034" ref_strand="+" ref_description="SGN-E700034 [FA11DF12]">
      <seq>atttttgtgcagttgctcttgcacttaatgatttggggtataaagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcactaaataaacaaggtcacgaggttgatgcatttggtattggtactcatttagttacctgttatgctcaagctgctcttggtgttgttttcaagttagttgaaataaacaatcagcctagaatcaaactctctgaagacgtatcaaaggtctctattccatgcaaaaagcggtgttacagattgtatgggaaggaagggtacccccttgtagacataatgactggtgaaaatgagccacatcccaaggtaggtgaacgaattttatgccgccacccatttagtgaatctaaaagggcatacgtagtgccccagcgtgttgaggaacttttaaagtgtttttggcccggaaagtcagctaaaacaagagaagaccttcctcctctgaaggagatcagggaaagatgtattgcacaactggaccaaatgcgaccagatcacatgagaaggctgaacccaacaccatacaaggtcagtgtgagtgcaaagttgtatgatttcatccatttcctctggctcaatgaaacacctgttggagagttgcagtgaaccatgaatgagaagtttgggagtcttctaggtttcttgtgcatctttttcatcatgtaaactgaaattttacataaagttattaaccaaagagaagtccgttctttactttttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="121552" stop="117793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121252" g_stop="121216" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121215" i_stop="120188" i_length="1028">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120187" g_stop="120013" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="212" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119423" g_stop="119289" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="347" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119288" i_stop="119218" i_length="71">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119217" g_stop="119119" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="446" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119118" i_stop="118975" i_length="144">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118974" g_stop="118866" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="555" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118865" i_stop="118637" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118636" g_stop="118524" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="668" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118523" i_stop="118290" i_length="234">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118289" g_stop="118093" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="865" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E700034" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121252" e_stop="121216"/>
          <exon e_start="120187" e_stop="120013"/>
          <exon e_start="119423" e_stop="119289"/>
          <exon e_start="119217" e_stop="119119"/>
          <exon e_start="118974" e_stop="118866"/>
          <exon e_start="118636" e_stop="118524"/>
          <exon e_start="118289" e_stop="118093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGGGTAAGCTGTTTGCATGATGAATTCTATTTAGATTGTAAAATTGCCTTTCTTTTATGCATGTCTTGGCCTCATGTGATCCTTAATATTCCGGAAGGGGAATGGTATGCCAACTAGAATTCCTAATTTTTCAATTTTGTTAATATGATAGTTTTAAACTTGTGTTATTTTGTTTTGTTCATGAACGTGAAAGAATAACTAGTCTAGAATGAAATCCTTGGATTTTGAAACAGCTAAGTGTGAATCTGTCCCCCACATCCACCTTTTAATACAGCAAGAGGTGCAAACACGCAAAGTTGTCCAGGGTCATCAATGGTTCTAGGACCTATTGTCCATGAGATACTTCCATCCTAGTTTGAGAATCATGTGCCATTCCTCTTAGAGTTTTCATGATGATATGTAATTTCATTTATTTTAATTATATATGTGTGGACCTAGCAAGGGAGGGTTAACCTAGTGGAAAGGAAAGGACTCTCCACATCAACCTTGAGGTTGGAGTTCAAGTTACCTATGGAACAAAGTAGGAACCGGTGATTATCGAGGCCTGGGCAAAAGGGGTTCCTGGTGGGGAGGGAGGAAGATAGTTGTCCATAGCTAAAAGAAGGTTTATATATGTGGACCTCGTTGATTAGATGAACCACACATGTACTTAAACATATACTTTCTTCAGACAATCTTGGTGTGTTATTAATGAAAGGTATTTACTTATCAAAAAAACGGAACGCACCTCTTATTTACAATTGATGGTGCAGAACCTTTCTATTTCATAATCACACAAGATATATACATTTTCTTAACGAAGAGCAATATAGATATCTCCCCTCCTTGTCCTAAACAATAAATTCATTTTTGAGCAAATTTGTGGGATTACACTGGGTATGTTGTTGTATTTCTTTAAGCTTGAATTATTACTATGTTTAAACTAGTCTTTTTCTACTTTCTAATGGTAATTTTCTAGTGTATTTTCTCTCTTTTGCACTCGCCCTGTATTTTGTTTTCAGCCTATTTAGTCTTTACATACTATTATGCAGGTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAAGATCATTAGGATTCTCTCACATACTGCTCTTATCTTGTGCTCGTCATTCTTATTATCCGTGTTCTACTCTCTGTGAATGATTTCTAGTCTATTGACAACTCTCTGGCTTTTTGTGCTTCACTAAGTTGTTAATCTTGTGGCACTATCTAGATTAAGAGGGTATTCATACATGAAATAATAGTGTACATAAATGTATTCTTCAATGCATATAGTTATGTTTATCAGCTGTGAATGAAGTATGATCAGGAAAATCATCTCTAGCTTGAAATATGAGTTGGTTTAATATAGCTCCCTCAAGATTTTTGTGGACACAGACTGTTCTAGTAGAAATAAACGCATACCCTCCTACTGGTGGACAAAAGCACATCCTTGTTGACTCATAGTTAATGGATAGGTAGAAAGACCAAATCTTTGCCTATGTTGGAATATGAAGTGGAGGTGTGATTATTCTAGCTAAATTGATCTTCTCATTTTAGAACACTCAAATTAGTTAAAACTTGTGGCTTGAATGTTGGTTCTCGTGCCTATTAGCTTTCATTTTTCTCATTCAGTAAAGCTACATCAACTAACTTATACCTTATACAGGGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAGGTCTGCCAAAGCTATGGATACTCATTTGGTATTTAGATTCAGTGTGGAAGTTCATAATTTCTTGTTTCTAGGTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAGGTGATTTATGAGGCTTGCTTACTGATCTTCTAGTAGTTCTTTGTGCTATTTCATCCATTGTCAATTCTAATTTAGAAATTAGATAAGCTTCATTGGTACCAAAAAACAGATAATGGACAACTTTTTTTTCCTGCAACTTGACAGGTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAGGTAAGAGCTGTTATCCCTATATTGTATTAATGTTAGTTTGAATTATTCGTATTTCTACCAGAAGCATGACCCTACTTTTCCATAGACTCCAAATTATTGAGTGAAGCCCCTGTTGCCTGTTGGTAACATTTTTAAGTTACAGTGAGATATTAAAAAATGACTAGTTCAGTTCAGCTGCTCCTTAAGTTAATAAGTGTTGACTAATGGATGGTGGTTTGTCATTCTGAAGCTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAGGTAAGTACCAATTGTTCTCTTTTTTCTCTCAATTAAAAATTTTAAAAGGAAATTGGGGAGGGGGGGGGGGGTAGTAGTCAGGGGAAATGGAGTCAAATCCCCTCACCAACCAAGTGAAAGTTCAGATAGCCAACAAACTAAGCTACTAAGGTGACCTAAATTATACTAGTATGTCTAGGCTGAAGTGCTTTTTCTTTTCAGGTTGTCAGTTTTGATTGAATTTTTGTTGTGCAGGTCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAGCACCTGTTGGAGAGTTGCAGTGAACCATGAATGAGAAGTTTGGGAGTCTTCTAGGTTTCTTGTGCATCTTTTTCATCATGTAAACTGAAATTTTACATAAAGTTATTAACCAAAGAGAAGTCCGTTCTTTACTTTTTCCCCC</genome_strand>
        <mrna_strand>ATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAG.......................................................................GTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAG................................................................................................................................................GTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAG.....................................................................................................................................................................................................................................CTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAG..........................................................................................................................................................................................................................................GTCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAACACCTGTTGGAGAGTTGCAGTGAACCATGAATGAGAAGTTTGGGAGTCTTCTAGGTTTCTTGTGCATCTTTTTCATCATGTAAACTGAAATTTTACATAAAGTTATTAACCAAAGAGAAGTCCGTTCTTTACTTTTTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271944" ref_strand="+" ref_description="SGN-E271944 [cLEM-8-K15]">
      <seq>tagactctggtgatcttgcttatgagtcatgtgaagctaggagattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcactaaataaacaaggtcacgaggttgatgcatttggtattggtactcatttagttacctgttatgctcaagctgctcttggtgttgttttcaagttagttgaaataaacaatcagcctagaatcaaactctctgaagacgtatcaaaggtctctattccatgcaaaaagcggtgttacagattgtatgggaaggaagggtacccccttgtagacataatgactggtgaaaatgagccacatcccaaggtaggtgaacgaattttatgccgccacccatttagtgaatctaaaagggcatacgtagtgccccagcgtgttgaggaacttttaaagtgtttttggcccggaaagtcagctaaaacaagagaagaccttcctcctctgaaggagatcagggaaagatgtattgcacaactggaccaaatgcgaccagatcacatgagaaggctgaacccaacaccatacaaggtcagtgtgagtgcaaagttgtatgatttcatccatttcctctggctcaatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="120464" stop="117935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120164" g_stop="120013" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119423" g_stop="119289" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="287" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119288" i_stop="119218" i_length="71">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119217" g_stop="119119" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="386" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119118" i_stop="118975" i_length="144">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118974" g_stop="118866" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="495" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118865" i_stop="118637" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118636" g_stop="118524" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="608" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118523" i_stop="118290" i_length="234">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118289" g_stop="118235" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="663" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E271944" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120164" e_stop="120013"/>
          <exon e_start="119423" e_stop="119289"/>
          <exon e_start="119217" e_stop="119119"/>
          <exon e_start="118974" e_stop="118866"/>
          <exon e_start="118636" e_stop="118524"/>
          <exon e_start="118289" e_stop="118235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAAGATCATTAGGATTCTCTCACATACTGCTCTTATCTTGTGCTCGTCATTCTTATTATCCGTGTTCTACTCTCTGTGAATGATTTCTAGTCTATTGACAACTCTCTGGCTTTTTGTGCTTCACTAAGTTGTTAATCTTGTGGCACTATCTAGATTAAGAGGGTATTCATACATGAAATAATAGTGTACATAAATGTATTCTTCAATGCATATAGTTATGTTTATCAGCTGTGAATGAAGTATGATCAGGAAAATCATCTCTAGCTTGAAATATGAGTTGGTTTAATATAGCTCCCTCAAGATTTTTGTGGACACAGACTGTTCTAGTAGAAATAAACGCATACCCTCCTACTGGTGGACAAAAGCACATCCTTGTTGACTCATAGTTAATGGATAGGTAGAAAGACCAAATCTTTGCCTATGTTGGAATATGAAGTGGAGGTGTGATTATTCTAGCTAAATTGATCTTCTCATTTTAGAACACTCAAATTAGTTAAAACTTGTGGCTTGAATGTTGGTTCTCGTGCCTATTAGCTTTCATTTTTCTCATTCAGTAAAGCTACATCAACTAACTTATACCTTATACAGGGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAGGTCTGCCAAAGCTATGGATACTCATTTGGTATTTAGATTCAGTGTGGAAGTTCATAATTTCTTGTTTCTAGGTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAGGTGATTTATGAGGCTTGCTTACTGATCTTCTAGTAGTTCTTTGTGCTATTTCATCCATTGTCAATTCTAATTTAGAAATTAGATAAGCTTCATTGGTACCAAAAAACAGATAATGGACAACTTTTTTTTCCTGCAACTTGACAGGTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAGGTAAGAGCTGTTATCCCTATATTGTATTAATGTTAGTTTGAATTATTCGTATTTCTACCAGAAGCATGACCCTACTTTTCCATAGACTCCAAATTATTGAGTGAAGCCCCTGTTGCCTGTTGGTAACATTTTTAAGTTACAGTGAGATATTAAAAAATGACTAGTTCAGTTCAGCTGCTCCTTAAGTTAATAAGTGTTGACTAATGGATGGTGGTTTGTCATTCTGAAGCTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAGGTAAGTACCAATTGTTCTCTTTTTTCTCTCAATTAAAAATTTTAAAAGGAAATTGGGGAGGGGGGGGGGGGTAGTAGTCAGGGGAAATGGAGTCAAATCCCCTCACCAACCAAGTGAAAGTTCAGATAGCCAACAAACTAAGCTACTAAGGTGACCTAAATTATACTAGTATGTCTAGGCTGAAGTGCTTTTTCTTTTCAGGTTGTCAGTTTTGATTGAATTTTTGTTGTGCAGGTCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAG</genome_strand>
        <mrna_strand>TAGACTCTGGTGATCTTGCTTATGAGTCATGTGAAGCTAGGAGATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAG.......................................................................GTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAG................................................................................................................................................GTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAG.....................................................................................................................................................................................................................................CTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAG..........................................................................................................................................................................................................................................GTCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331562" ref_strand="+" ref_description="SGN-E331562 [cTOD-9-N7]">
      <seq>aagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcactaaataaacaaggtcacgaggttgatgcatttggtattggtactcatttagttacctgttatgctcaagctgctcttggtgttgttttcaagttagttgaaataaacaatcagcctagaatcaaactctctgaagacgtatcaaaggtctctattccatgcaaaaagcggtgttacagattgtatgggaaggaagggtacccccttgtagacataatgactggtgaaaatgagccacatcccaaggtaggtgaacgaattttatgccgccacccatttagtgaatctaaaagggcatacgtagtgccccagcgtgttgaggaacttttaaagtgtttttggcccggaaagtcagctaaaacaagagaagaccttcctcctctgaaggagatcagggaaagatgtattgcacaactggaccaaatgcgaccagatcacatgagaaggctgaacccaacaccatacaaagtcagtgtgagtgcaaagttgtatgatttcatccatttcctctggctcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="120482" stop="117938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120182" g_stop="120013" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119423" g_stop="119289" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="305" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119288" i_stop="119218" i_length="71">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119217" g_stop="119119" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="404" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119118" i_stop="118975" i_length="144">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118974" g_stop="118866" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="513" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118865" i_stop="118637" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118636" g_stop="118524" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="626" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118523" i_stop="118290" i_length="234">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118289" g_stop="118238" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="678" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E331562" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120182" e_stop="120013"/>
          <exon e_start="119423" e_stop="119289"/>
          <exon e_start="119217" e_stop="119119"/>
          <exon e_start="118974" e_stop="118866"/>
          <exon e_start="118636" e_stop="118524"/>
          <exon e_start="118289" e_stop="118238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAAGATCATTAGGATTCTCTCACATACTGCTCTTATCTTGTGCTCGTCATTCTTATTATCCGTGTTCTACTCTCTGTGAATGATTTCTAGTCTATTGACAACTCTCTGGCTTTTTGTGCTTCACTAAGTTGTTAATCTTGTGGCACTATCTAGATTAAGAGGGTATTCATACATGAAATAATAGTGTACATAAATGTATTCTTCAATGCATATAGTTATGTTTATCAGCTGTGAATGAAGTATGATCAGGAAAATCATCTCTAGCTTGAAATATGAGTTGGTTTAATATAGCTCCCTCAAGATTTTTGTGGACACAGACTGTTCTAGTAGAAATAAACGCATACCCTCCTACTGGTGGACAAAAGCACATCCTTGTTGACTCATAGTTAATGGATAGGTAGAAAGACCAAATCTTTGCCTATGTTGGAATATGAAGTGGAGGTGTGATTATTCTAGCTAAATTGATCTTCTCATTTTAGAACACTCAAATTAGTTAAAACTTGTGGCTTGAATGTTGGTTCTCGTGCCTATTAGCTTTCATTTTTCTCATTCAGTAAAGCTACATCAACTAACTTATACCTTATACAGGGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAGGTCTGCCAAAGCTATGGATACTCATTTGGTATTTAGATTCAGTGTGGAAGTTCATAATTTCTTGTTTCTAGGTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAGGTGATTTATGAGGCTTGCTTACTGATCTTCTAGTAGTTCTTTGTGCTATTTCATCCATTGTCAATTCTAATTTAGAAATTAGATAAGCTTCATTGGTACCAAAAAACAGATAATGGACAACTTTTTTTTCCTGCAACTTGACAGGTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAGGTAAGAGCTGTTATCCCTATATTGTATTAATGTTAGTTTGAATTATTCGTATTTCTACCAGAAGCATGACCCTACTTTTCCATAGACTCCAAATTATTGAGTGAAGCCCCTGTTGCCTGTTGGTAACATTTTTAAGTTACAGTGAGATATTAAAAAATGACTAGTTCAGTTCAGCTGCTCCTTAAGTTAATAAGTGTTGACTAATGGATGGTGGTTTGTCATTCTGAAGCTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAGGTAAGTACCAATTGTTCTCTTTTTTCTCTCAATTAAAAATTTTAAAAGGAAATTGGGGAGGGGGGGGGGGGTAGTAGTCAGGGGAAATGGAGTCAAATCCCCTCACCAACCAAGTGAAAGTTCAGATAGCCAACAAACTAAGCTACTAAGGTGACCTAAATTATACTAGTATGTCTAGGCTGAAGTGCTTTTTCTTTTCAGGTTGTCAGTTTTGATTGAATTTTTGTTGTGCAGGTCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATG</genome_strand>
        <mrna_strand>AAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAG.......................................................................GTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAG................................................................................................................................................GTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAG.....................................................................................................................................................................................................................................CTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAA..........................................................................................................................................................................................................................................GTCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295365" ref_strand="+" ref_description="SGN-E295365 [cLET-23-G18]">
      <seq>tcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcactaaataaacaaggtcacgaggttgatgcatttggtattggtactcatttagttacctgttatgctcaagctgctcttggtgttgttttcaagttagttgaaataaacaatcagcctagaatcaaactctctgaagacgtatcaaaggtctctattccatgcaaaaagcggtgttacagattgtatgggaaggaagggtacccccttgtagacataatgactggtgaaaatgagccacatcccaaggtaggtgaacgaattttatgccgccacccatttagtgaatctaaaagggcatacgtagtgccccagcgtgttgaggaacttttaaagtgtttttggcccggaaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="120438" stop="118567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120138" g_stop="120013" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119423" g_stop="119289" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="261" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119288" i_stop="119218" i_length="71">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119217" g_stop="119119" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="360" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119118" i_stop="118975" i_length="144">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118974" g_stop="118867" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="468" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E295365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120138" e_stop="120013"/>
          <exon e_start="119423" e_stop="119289"/>
          <exon e_start="119217" e_stop="119119"/>
          <exon e_start="118974" e_stop="118867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAAGATCATTAGGATTCTCTCACATACTGCTCTTATCTTGTGCTCGTCATTCTTATTATCCGTGTTCTACTCTCTGTGAATGATTTCTAGTCTATTGACAACTCTCTGGCTTTTTGTGCTTCACTAAGTTGTTAATCTTGTGGCACTATCTAGATTAAGAGGGTATTCATACATGAAATAATAGTGTACATAAATGTATTCTTCAATGCATATAGTTATGTTTATCAGCTGTGAATGAAGTATGATCAGGAAAATCATCTCTAGCTTGAAATATGAGTTGGTTTAATATAGCTCCCTCAAGATTTTTGTGGACACAGACTGTTCTAGTAGAAATAAACGCATACCCTCCTACTGGTGGACAAAAGCACATCCTTGTTGACTCATAGTTAATGGATAGGTAGAAAGACCAAATCTTTGCCTATGTTGGAATATGAAGTGGAGGTGTGATTATTCTAGCTAAATTGATCTTCTCATTTTAGAACACTCAAATTAGTTAAAACTTGTGGCTTGAATGTTGGTTCTCGTGCCTATTAGCTTTCATTTTTCTCATTCAGTAAAGCTACATCAACTAACTTATACCTTATACAGGGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAGGTCTGCCAAAGCTATGGATACTCATTTGGTATTTAGATTCAGTGTGGAAGTTCATAATTTCTTGTTTCTAGGTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAGGTGATTTATGAGGCTTGCTTACTGATCTTCTAGTAGTTCTTTGTGCTATTTCATCCATTGTCAATTCTAATTTAGAAATTAGATAAGCTTCATTGGTACCAAAAAACAGATAATGGACAACTTTTTTTTCCTGCAACTTGACAGGTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCA</genome_strand>
        <mrna_strand>TCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAG.......................................................................GTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAG................................................................................................................................................GTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431878" ref_strand="+" ref_description="SGN-E431878 [STM-56-K17]">
      <seq>tcagcatccaagtattgctacatgggtggatttgatgcgacaagcaatgtggcagctggaaagctgtttggaatcccactccgtgggacacattcccatgcctttgttagctcatttatgagcccagatgagatcatagagaaatcacttaaacatcataatggttctagtgtttgtgaggattttgttagtctggtacagacatggcttgacaaattaaagtggtcacacttattaggtggaattttcagtgagacaaaccaaagtgagttagcagctttcgcctcatatgcacttgcatttcctggaagttttttggcccttgtagacacttatgatgtcatgagaagtggtcttccaaatttttgtgcagttgctcttgcacttaatgatttggggtataaagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctgcttttggaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcactaaataaacaaggtcacgaggttgatgcatttggtattggtacacatttagttacctgttatgctcaagctgctctgggtgttgttttcaagttagttgaaataaacaatcagcctagaatcaaactttctgaagacgtatcaaaggtctctattccatgcaaaaagcggtgttacagattgtatgggaagggaagatacccccttgtagacataatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="124314" stop="118843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124014" g_stop="123971" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123970" i_stop="123624" i_length="347">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123623" g_stop="123548" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="120" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123547" i_stop="122657" i_length="891">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122656" g_stop="122555" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="222" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122554" i_stop="121695" i_length="860">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121694" g_stop="121578" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="339" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121577" i_stop="121275" i_length="303">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121274" g_stop="121216" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="398" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121215" i_stop="120188" i_length="1028">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120187" g_stop="120013" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="573" r_length="175" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119423" g_stop="119289" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="708" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="119288" i_stop="119218" i_length="71">
            <donor d_prob="0.893" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="119217" g_stop="119143" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="783" r_length="75" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E431878" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124014" e_stop="123971"/>
          <exon e_start="123623" e_stop="123548"/>
          <exon e_start="122656" e_stop="122555"/>
          <exon e_start="121694" e_stop="121578"/>
          <exon e_start="121274" e_stop="121216"/>
          <exon e_start="120187" e_stop="120013"/>
          <exon e_start="119423" e_stop="119289"/>
          <exon e_start="119217" e_stop="119143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATCCAAGTATTGCTACATGGGTGGATTTGATGCGACAAGGTGATTTCGTGTTTATTTCACTGTGTCTCTATGAAATGCATCATCTACTTATCTTTTTCCAATGATCTAACCAGAAAAATAATCATTCAAGAAAGAATTTGATCCGTAAGATGGATGGTTACAGTTGATAAAAAACTATGGTGTACTTTTACGTTTACATGCTGCATTATGGATTGCTGCAACCTAATGTTATATCTTTTGCTGGTTATGTTTATCATTTTGATAAGGAAATAAAATTTCTTTTTGTAAGTTAGAATGCTGAGACATTATTTTATTCCTGTTGGTGTTTTCTTTCTTTTTAATCATAGCCAAGACTGGAGGTTCACTGTTTCTTTGTGATTTGACAGCAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCCGTGGGACACATTCCCATGCCTTTGTTAGCTCATTTCTGGTAGGTGCAACCTTCAAAGATCTAGTTTATAGTCAAAGCATAGTAAGAAACATGTCTTAGGATAGTAAAGTGCTCCGTTCAAATTCCCATTTTAGTCCCTTATACGAATGTTAGTTTGTCTTCAGTTACTCATCTATTGTTATTATTATCATTTTTCATTATTACAGTCATTTTGAAGGTATAATTACCACATCTATTTGCTTGCTGGCCAACTTAATGTAGACATAATCATTTCATCTGTAACACATTTGATGACAATATTATGAATTTAATACTGAAAAGACGTTCTTGGCTGTTAAACAAATTACTTAAATTGTTTGATAGAGTCATTCACTATTGTAAGTGGAATGCAAGTGGTTTTTTTTGCTCTTATGGCTCCATATGTATTGATAGGGTACATAAATGCTTGTATATACTCAATTGGTTAAGTGACAATTGTAGTTTCTACCTCAATGTCATTGAGTGGCATCAGTTAAATATGTTAGTCAATGCATAATTGCACATAGCTCAATCACTAACTCATATGAAATTATGTGTATTGGAATGGCAAGCTTAGAGCTAATTATTGTTATACATATGATAAAATTATTTTCTGTCCTGACTTATCAAAAAATACATGATCGATTATCCAGGCTTCAGCTAGAATCCTTAGTAGATGTAATTATGAACTCATCATGTCATGTTCTCTGTGGATACTAATTTCAAGTTTTGTTACTATCAATTGTTTTGTCATGTGCACGTTATCTTGCTTATTGATGAATATAAAGACAAGTAAATTAAGTACTCAAATGTTCTGTAGATGCCTAGTATTTCTTTTTCTCTAGATTGTGCACTCAACATCTTCTACTTGCTTGAAGTTATCTGGTATTTAACTTAGTCCTTATGATGCAGAGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAGGTATTAATCATCTCATTCTTTTGATGCACTAGTTAGATCATCAAAAAAAAAAAAATTATTGAAGTCTTCCATTTGATTTTTTTTCTTGGAATCTGACCATTTCGGTTTATGCATTCTGATAAATCATATTGGTTCTCTATATTGGTATCACCTTTTTCATTTCAAATATCATTTAGCGTTGACTTCAATTTTCACCTTTTCATTTCAATATACTGAACTAAGCTCCTAGTCTTCCTTACCAAACCTGCTCAAAATCCACACCGTCAAGAGCATATGTGGTTTGAGTGACTGTCAGAGTGTCAATTCTTGTCAGTGTTTAATAAAGTAGGCCTAACATAGAAAACCTGAGGGAGTTTATGTTACAATTTGATTGCCAAAAGGGAGTATGATGTATAATTCCTTCATTTAATTCTGCTTAACCCCTATGGATAGCTGAACTCGTAGCCAGAATACTGGACATGTGCCTAATGTGTATGATTCCACTGAGATAAACTATTTCCTCTCGGACGATTTGTGTGCTTAGAGGTAACTATGATGCTAGGTTGTGCCCACCCGTCCTCCCCAAAAAGGAATAAATAATGCTACTCAGGGGTTGCATACCATTACAAAGAGAATCTGCATGTTTTTCATGATTGATAACAATGAAATATCTTTGTTGCCAAGTCTTCTCTTAGTACTCTAACAATGAGGCTGGAAATCTATTATGAATCTCATGTAGGCCTTCCCTTAATTTTGCATGAAGTTTAAAAATCCTTGTAGCATCATTAGGATATATCAATATAGAACATTACTCTGGAATCTGCTTCTCTTCCATTTTGAGCATGAATGTCATTGATGTGATAACTCTTTGATCTTTTCAGTGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGATGTAAGTACAACTTGTGGACATATTCTTTTCCTCTGTATTCTGTGATATTTGGCTTGGCCATCTAAAACTATACACATGGATTTTGTAGAGACAAAACTTAGTCAATAATCTTACTTTGAAAGAGAAAAGGGTACTCGTCATGATATTTATATATCAGGCTAGACATATAATCTTTTTGTATTGGAAGTTCGAAATAATATTCAGCTAGTAATGTTGTTTCGATTAAGTTGTACTTATGCTGCATCCCCCTTTGTTCTTCATTTACAATGTGCTCTTTGATAACGTTTGAACGTACTTTAACAGGTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGGGTAAGCTGTTTGCATGATGAATTCTATTTAGATTGTAAAATTGCCTTTCTTTTATGCATGTCTTGGCCTCATGTGATCCTTAATATTCCGGAAGGGGAATGGTATGCCAACTAGAATTCCTAATTTTTCAATTTTGTTAATATGATAGTTTTAAACTTGTGTTATTTTGTTTTGTTCATGAACGTGAAAGAATAACTAGTCTAGAATGAAATCCTTGGATTTTGAAACAGCTAAGTGTGAATCTGTCCCCCACATCCACCTTTTAATACAGCAAGAGGTGCAAACACGCAAAGTTGTCCAGGGTCATCAATGGTTCTAGGACCTATTGTCCATGAGATACTTCCATCCTAGTTTGAGAATCATGTGCCATTCCTCTTAGAGTTTTCATGATGATATGTAATTTCATTTATTTTAATTATATATGTGTGGACCTAGCAAGGGAGGGTTAACCTAGTGGAAAGGAAAGGACTCTCCACATCAACCTTGAGGTTGGAGTTCAAGTTACCTATGGAACAAAGTAGGAACCGGTGATTATCGAGGCCTGGGCAAAAGGGGTTCCTGGTGGGGAGGGAGGAAGATAGTTGTCCATAGCTAAAAGAAGGTTTATATATGTGGACCTCGTTGATTAGATGAACCACACATGTACTTAAACATATACTTTCTTCAGACAATCTTGGTGTGTTATTAATGAAAGGTATTTACTTATCAAAAAAACGGAACGCACCTCTTATTTACAATTGATGGTGCAGAACCTTTCTATTTCATAATCACACAAGATATATACATTTTCTTAACGAAGAGCAATATAGATATCTCCCCTCCTTGTCCTAAACAATAAATTCATTTTTGAGCAAATTTGTGGGATTACACTGGGTATGTTGTTGTATTTCTTTAAGCTTGAATTATTACTATGTTTAAACTAGTCTTTTTCTACTTTCTAATGGTAATTTTCTAGTGTATTTTCTCTCTTTTGCACTCGCCCTGTATTTTGTTTTCAGCCTATTTAGTCTTTACATACTATTATGCAGGTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAAGATCATTAGGATTCTCTCACATACTGCTCTTATCTTGTGCTCGTCATTCTTATTATCCGTGTTCTACTCTCTGTGAATGATTTCTAGTCTATTGACAACTCTCTGGCTTTTTGTGCTTCACTAAGTTGTTAATCTTGTGGCACTATCTAGATTAAGAGGGTATTCATACATGAAATAATAGTGTACATAAATGTATTCTTCAATGCATATAGTTATGTTTATCAGCTGTGAATGAAGTATGATCAGGAAAATCATCTCTAGCTTGAAATATGAGTTGGTTTAATATAGCTCCCTCAAGATTTTTGTGGACACAGACTGTTCTAGTAGAAATAAACGCATACCCTCCTACTGGTGGACAAAAGCACATCCTTGTTGACTCATAGTTAATGGATAGGTAGAAAGACCAAATCTTTGCCTATGTTGGAATATGAAGTGGAGGTGTGATTATTCTAGCTAAATTGATCTTCTCATTTTAGAACACTCAAATTAGTTAAAACTTGTGGCTTGAATGTTGGTTCTCGTGCCTATTAGCTTTCATTTTTCTCATTCAGTAAAGCTACATCAACTAACTTATACCTTATACAGGGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAGGTCTGCCAAAGCTATGGATACTCATTTGGTATTTAGATTCAGTGTGGAAGTTCATAATTTCTTGTTTCTAGGTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACT</genome_strand>
        <mrna_strand>TCAGCATCCAAGTATTGCTACATGGGTGGATTTGATGCGACAAG...........................................................................................................................................................................................................................................................................................................................................................CAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCCGTGGGACACATTCCCATGCCTTTGTTAGCTCATTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGATGAGATCATAGAGAAATCACTTAAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGACAAATTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACTTATTAGGTGGAATTTTCAGTGAGACAAACCAAAGTGAGTTAGCAGCTTTCGCCTCATATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT...............................................................................................................................................................................................................................................................................................................GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGCTTTTGGAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACGAGGTTGATGCATTTGGTATTGGTACACATTTAGTTACCTGTTATGCTCAAGCTGCTCTGGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTTTCTGAAGACGTATCAAAG.......................................................................GTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGGAAGATACCCCCTTGTAGACATAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239482" ref_strand="+" ref_description="SGN-E239482 [cLED-23-P17]">
      <seq>gatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcactaaataaacaaggtcacgaggttgatgcatttggtattggtactcatttagttacctgttatgctcaagctgctcttggtgttgttttcaagttagttgaaataaacaatcagcctagaatcaaactctctgaagacgtatcaaaggtctctattccatgcaaaaagcggtgttacagattgtatgggaaggaagggtaccccctttgtgacataatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="120453" stop="118844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120153" g_stop="120013" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119423" g_stop="119289" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="276" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119288" i_stop="119218" i_length="71">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119217" g_stop="119144" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="350" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E239482" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120153" e_stop="120013"/>
          <exon e_start="119423" e_stop="119289"/>
          <exon e_start="119217" e_stop="119144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAAGATCATTAGGATTCTCTCACATACTGCTCTTATCTTGTGCTCGTCATTCTTATTATCCGTGTTCTACTCTCTGTGAATGATTTCTAGTCTATTGACAACTCTCTGGCTTTTTGTGCTTCACTAAGTTGTTAATCTTGTGGCACTATCTAGATTAAGAGGGTATTCATACATGAAATAATAGTGTACATAAATGTATTCTTCAATGCATATAGTTATGTTTATCAGCTGTGAATGAAGTATGATCAGGAAAATCATCTCTAGCTTGAAATATGAGTTGGTTTAATATAGCTCCCTCAAGATTTTTGTGGACACAGACTGTTCTAGTAGAAATAAACGCATACCCTCCTACTGGTGGACAAAAGCACATCCTTGTTGACTCATAGTTAATGGATAGGTAGAAAGACCAAATCTTTGCCTATGTTGGAATATGAAGTGGAGGTGTGATTATTCTAGCTAAATTGATCTTCTCATTTTAGAACACTCAAATTAGTTAAAACTTGTGGCTTGAATGTTGGTTCTCGTGCCTATTAGCTTTCATTTTTCTCATTCAGTAAAGCTACATCAACTAACTTATACCTTATACAGGGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAGGTCTGCCAAAGCTATGGATACTCATTTGGTATTTAGATTCAGTGTGGAAGTTCATAATTTCTTGTTTCTAGGTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGAC</genome_strand>
        <mrna_strand>GATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAG.......................................................................GTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTTGTGACATAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573215" ref_strand="+" ref_description="SGN-E573215 [32490]">
      <seq>tatgagcccagatgagatcatagagaaatcacttaaacatcataatggttctagtgtttgtgaggattttgttagtctggtacagacatggcttgacaaattaaagtggtcacacttattaggtggaattttcagtgagacaaaccaaagtgtgttagcagctttcgcctcatatgcacttgcatttcctggaagttttttggcccttgtagacacttatgatgtcatgagaagtggtcttccaaatttttgtgcagttgctcttgcacttaatgatttggggtataaagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctgcttttggaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcactaaataaacaaggtcacgaggttgatgcatttggtattggtacacatttagttacctgttatgctcaagctgctctgggtgttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="122957" stop="119048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122660" g_stop="122555" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122554" i_stop="121695" i_length="860">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121694" g_stop="121578" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="223" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121577" i_stop="121275" i_length="303">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121274" g_stop="121216" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="282" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121215" i_stop="120188" i_length="1028">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120187" g_stop="120013" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="457" r_length="175" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119423" g_stop="119348" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="533" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E573215" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122660" e_stop="122555"/>
          <exon e_start="121694" e_stop="121578"/>
          <exon e_start="121274" e_stop="121216"/>
          <exon e_start="120187" e_stop="120013"/>
          <exon e_start="119423" e_stop="119348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAGGTATTAATCATCTCATTCTTTTGATGCACTAGTTAGATCATCAAAAAAAAAAAAATTATTGAAGTCTTCCATTTGATTTTTTTTCTTGGAATCTGACCATTTCGGTTTATGCATTCTGATAAATCATATTGGTTCTCTATATTGGTATCACCTTTTTCATTTCAAATATCATTTAGCGTTGACTTCAATTTTCACCTTTTCATTTCAATATACTGAACTAAGCTCCTAGTCTTCCTTACCAAACCTGCTCAAAATCCACACCGTCAAGAGCATATGTGGTTTGAGTGACTGTCAGAGTGTCAATTCTTGTCAGTGTTTAATAAAGTAGGCCTAACATAGAAAACCTGAGGGAGTTTATGTTACAATTTGATTGCCAAAAGGGAGTATGATGTATAATTCCTTCATTTAATTCTGCTTAACCCCTATGGATAGCTGAACTCGTAGCCAGAATACTGGACATGTGCCTAATGTGTATGATTCCACTGAGATAAACTATTTCCTCTCGGACGATTTGTGTGCTTAGAGGTAACTATGATGCTAGGTTGTGCCCACCCGTCCTCCCCAAAAAGGAATAAATAATGCTACTCAGGGGTTGCATACCATTACAAAGAGAATCTGCATGTTTTTCATGATTGATAACAATGAAATATCTTTGTTGCCAAGTCTTCTCTTAGTACTCTAACAATGAGGCTGGAAATCTATTATGAATCTCATGTAGGCCTTCCCTTAATTTTGCATGAAGTTTAAAAATCCTTGTAGCATCATTAGGATATATCAATATAGAACATTACTCTGGAATCTGCTTCTCTTCCATTTTGAGCATGAATGTCATTGATGTGATAACTCTTTGATCTTTTCAGTGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGATGTAAGTACAACTTGTGGACATATTCTTTTCCTCTGTATTCTGTGATATTTGGCTTGGCCATCTAAAACTATACACATGGATTTTGTAGAGACAAAACTTAGTCAATAATCTTACTTTGAAAGAGAAAAGGGTACTCGTCATGATATTTATATATCAGGCTAGACATATAATCTTTTTGTATTGGAAGTTCGAAATAATATTCAGCTAGTAATGTTGTTTCGATTAAGTTGTACTTATGCTGCATCCCCCTTTGTTCTTCATTTACAATGTGCTCTTTGATAACGTTTGAACGTACTTTAACAGGTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGGGTAAGCTGTTTGCATGATGAATTCTATTTAGATTGTAAAATTGCCTTTCTTTTATGCATGTCTTGGCCTCATGTGATCCTTAATATTCCGGAAGGGGAATGGTATGCCAACTAGAATTCCTAATTTTTCAATTTTGTTAATATGATAGTTTTAAACTTGTGTTATTTTGTTTTGTTCATGAACGTGAAAGAATAACTAGTCTAGAATGAAATCCTTGGATTTTGAAACAGCTAAGTGTGAATCTGTCCCCCACATCCACCTTTTAATACAGCAAGAGGTGCAAACACGCAAAGTTGTCCAGGGTCATCAATGGTTCTAGGACCTATTGTCCATGAGATACTTCCATCCTAGTTTGAGAATCATGTGCCATTCCTCTTAGAGTTTTCATGATGATATGTAATTTCATTTATTTTAATTATATATGTGTGGACCTAGCAAGGGAGGGTTAACCTAGTGGAAAGGAAAGGACTCTCCACATCAACCTTGAGGTTGGAGTTCAAGTTACCTATGGAACAAAGTAGGAACCGGTGATTATCGAGGCCTGGGCAAAAGGGGTTCCTGGTGGGGAGGGAGGAAGATAGTTGTCCATAGCTAAAAGAAGGTTTATATATGTGGACCTCGTTGATTAGATGAACCACACATGTACTTAAACATATACTTTCTTCAGACAATCTTGGTGTGTTATTAATGAAAGGTATTTACTTATCAAAAAAACGGAACGCACCTCTTATTTACAATTGATGGTGCAGAACCTTTCTATTTCATAATCACACAAGATATATACATTTTCTTAACGAAGAGCAATATAGATATCTCCCCTCCTTGTCCTAAACAATAAATTCATTTTTGAGCAAATTTGTGGGATTACACTGGGTATGTTGTTGTATTTCTTTAAGCTTGAATTATTACTATGTTTAAACTAGTCTTTTTCTACTTTCTAATGGTAATTTTCTAGTGTATTTTCTCTCTTTTGCACTCGCCCTGTATTTTGTTTTCAGCCTATTTAGTCTTTACATACTATTATGCAGGTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAAGATCATTAGGATTCTCTCACATACTGCTCTTATCTTGTGCTCGTCATTCTTATTATCCGTGTTCTACTCTCTGTGAATGATTTCTAGTCTATTGACAACTCTCTGGCTTTTTGTGCTTCACTAAGTTGTTAATCTTGTGGCACTATCTAGATTAAGAGGGTATTCATACATGAAATAATAGTGTACATAAATGTATTCTTCAATGCATATAGTTATGTTTATCAGCTGTGAATGAAGTATGATCAGGAAAATCATCTCTAGCTTGAAATATGAGTTGGTTTAATATAGCTCCCTCAAGATTTTTGTGGACACAGACTGTTCTAGTAGAAATAAACGCATACCCTCCTACTGGTGGACAAAAGCACATCCTTGTTGACTCATAGTTAATGGATAGGTAGAAAGACCAAATCTTTGCCTATGTTGGAATATGAAGTGGAGGTGTGATTATTCTAGCTAAATTGATCTTCTCATTTTAGAACACTCAAATTAGTTAAAACTTGTGGCTTGAATGTTGGTTCTCGTGCCTATTAGCTTTCATTTTTCTCATTCAGTAAAGCTACATCAACTAACTTATACCTTATACAGGGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTT</genome_strand>
        <mrna_strand>TATGAGCCCAGATGAGATCATAGAGAAATCACTTAAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGACAAATTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACTTATTAGGTGGAATTTTCAGTGAGACAAACCAAAGTGTGTTAGCAGCTTTCGCCTCATATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT...............................................................................................................................................................................................................................................................................................................GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGCTTTTGGAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACGAGGTTGATGCATTTGGTATTGGTACACATTTAGTTACCTGTTATGCTCAAGCTGCTCTGGGTGTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400525" ref_strand="+" ref_description="SGN-E400525 [PPC-1-C4]">
      <seq>tggcagctggaaagcctgtttggaaatcccacttccgtgggacccacttcccatgcctttgttagctcatttatgagcccagatgagatcatagagaaaatcacttaaacatcataatggttctagtgtttgtgaggattttgttagtctggtacagacatggcttgacaaattaaagtggtcacacttattaggtggaattttcagtgagacaaaccaaagtgagttagcagctttcgcctcatatgcacttgcatttnctggaagttttttggcccttgtagacacttatgatgtcatgagaagtggtcttccaaatttttgtgcagttgctcttgcacttaatgatttggggtataaagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctgcttttggnaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcactaaataaacaaggtcacgaggttgatgcatttggtattggtacaccatttagtacctgttatgctcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="123918" stop="119065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123618" g_stop="123548" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123547" i_stop="122657" i_length="891">
            <donor d_prob="0.956" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122656" g_stop="122555" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="178" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122554" i_stop="121695" i_length="860">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121694" g_stop="121578" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="295" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121577" i_stop="121275" i_length="303">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121274" g_stop="121216" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="354" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121215" i_stop="120188" i_length="1028">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120187" g_stop="120013" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="529" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119423" g_stop="119365" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="588" r_length="59" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E400525" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123618" e_stop="123548"/>
          <exon e_start="122656" e_stop="122555"/>
          <exon e_start="121694" e_stop="121578"/>
          <exon e_start="121274" e_stop="121216"/>
          <exon e_start="120187" e_stop="120013"/>
          <exon e_start="119423" e_stop="119365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGCTGGAAAG-CTGTTTGG-AATCCCAC-TCCGTGGGACACA-TTCCCATGCCTTTGTTAGCTCATTTCTGGTAGGTGCAACCTTCAAAGATCTAGTTTATAGTCAAAGCATAGTAAGAAACATGTCTTAGGATAGTAAAGTGCTCCGTTCAAATTCCCATTTTAGTCCCTTATACGAATGTTAGTTTGTCTTCAGTTACTCATCTATTGTTATTATTATCATTTTTCATTATTACAGTCATTTTGAAGGTATAATTACCACATCTATTTGCTTGCTGGCCAACTTAATGTAGACATAATCATTTCATCTGTAACACATTTGATGACAATATTATGAATTTAATACTGAAAAGACGTTCTTGGCTGTTAAACAAATTACTTAAATTGTTTGATAGAGTCATTCACTATTGTAAGTGGAATGCAAGTGGTTTTTTTTGCTCTTATGGCTCCATATGTATTGATAGGGTACATAAATGCTTGTATATACTCAATTGGTTAAGTGACAATTGTAGTTTCTACCTCAATGTCATTGAGTGGCATCAGTTAAATATGTTAGTCAATGCATAATTGCACATAGCTCAATCACTAACTCATATGAAATTATGTGTATTGGAATGGCAAGCTTAGAGCTAATTATTGTTATACATATGATAAAATTATTTTCTGTCCTGACTTATCAAAAAATACATGATCGATTATCCAGGCTTCAGCTAGAATCCTTAGTAGATGTAATTATGAACTCATCATGTCATGTTCTCTGTGGATACTAATTTCAAGTTTTGTTACTATCAATTGTTTTGTCATGTGCACGTTATCTTGCTTATTGATGAATATAAAGACAAGTAAATTAAGTACTCAAATGTTCTGTAGATGCCTAGTATTTCTTTTTCTCTAGATTGTGCACTCAACATCTTCTACTTGCTTGAAGTTATCTGGTATTTAACTTAGTCCTTATGATGCAGAGCCCAGATGAGATCATAGAGAA-ATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAGGTATTAATCATCTCATTCTTTTGATGCACTAGTTAGATCATCAAAAAAAAAAAAATTATTGAAGTCTTCCATTTGATTTTTTTTCTTGGAATCTGACCATTTCGGTTTATGCATTCTGATAAATCATATTGGTTCTCTATATTGGTATCACCTTTTTCATTTCAAATATCATTTAGCGTTGACTTCAATTTTCACCTTTTCATTTCAATATACTGAACTAAGCTCCTAGTCTTCCTTACCAAACCTGCTCAAAATCCACACCGTCAAGAGCATATGTGGTTTGAGTGACTGTCAGAGTGTCAATTCTTGTCAGTGTTTAATAAAGTAGGCCTAACATAGAAAACCTGAGGGAGTTTATGTTACAATTTGATTGCCAAAAGGGAGTATGATGTATAATTCCTTCATTTAATTCTGCTTAACCCCTATGGATAGCTGAACTCGTAGCCAGAATACTGGACATGTGCCTAATGTGTATGATTCCACTGAGATAAACTATTTCCTCTCGGACGATTTGTGTGCTTAGAGGTAACTATGATGCTAGGTTGTGCCCACCCGTCCTCCCCAAAAAGGAATAAATAATGCTACTCAGGGGTTGCATACCATTACAAAGAGAATCTGCATGTTTTTCATGATTGATAACAATGAAATATCTTTGTTGCCAAGTCTTCTCTTAGTACTCTAACAATGAGGCTGGAAATCTATTATGAATCTCATGTAGGCCTTCCCTTAATTTTGCATGAAGTTTAAAAATCCTTGTAGCATCATTAGGATATATCAATATAGAACATTACTCTGGAATCTGCTTCTCTTCCATTTTGAGCATGAATGTCATTGATGTGATAACTCTTTGATCTTTTCAGTGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGATGTAAGTACAACTTGTGGACATATTCTTTTCCTCTGTATTCTGTGATATTTGGCTTGGCCATCTAAAACTATACACATGGATTTTGTAGAGACAAAACTTAGTCAATAATCTTACTTTGAAAGAGAAAAGGGTACTCGTCATGATATTTATATATCAGGCTAGACATATAATCTTTTTGTATTGGAAGTTCGAAATAATATTCAGCTAGTAATGTTGTTTCGATTAAGTTGTACTTATGCTGCATCCCCCTTTGTTCTTCATTTACAATGTGCTCTTTGATAACGTTTGAACGTACTTTAACAGGTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGGGTAAGCTGTTTGCATGATGAATTCTATTTAGATTGTAAAATTGCCTTTCTTTTATGCATGTCTTGGCCTCATGTGATCCTTAATATTCCGGAAGGGGAATGGTATGCCAACTAGAATTCCTAATTTTTCAATTTTGTTAATATGATAGTTTTAAACTTGTGTTATTTTGTTTTGTTCATGAACGTGAAAGAATAACTAGTCTAGAATGAAATCCTTGGATTTTGAAACAGCTAAGTGTGAATCTGTCCCCCACATCCACCTTTTAATACAGCAAGAGGTGCAAACACGCAAAGTTGTCCAGGGTCATCAATGGTTCTAGGACCTATTGTCCATGAGATACTTCCATCCTAGTTTGAGAATCATGTGCCATTCCTCTTAGAGTTTTCATGATGATATGTAATTTCATTTATTTTAATTATATATGTGTGGACCTAGCAAGGGAGGGTTAACCTAGTGGAAAGGAAAGGACTCTCCACATCAACCTTGAGGTTGGAGTTCAAGTTACCTATGGAACAAAGTAGGAACCGGTGATTATCGAGGCCTGGGCAAAAGGGGTTCCTGGTGGGGAGGGAGGAAGATAGTTGTCCATAGCTAAAAGAAGGTTTATATATGTGGACCTCGTTGATTAGATGAACCACACATGTACTTAAACATATACTTTCTTCAGACAATCTTGGTGTGTTATTAATGAAAGGTATTTACTTATCAAAAAAACGGAACGCACCTCTTATTTACAATTGATGGTGCAGAACCTTTCTATTTCATAATCACACAAGATATATACATTTTCTTAACGAAGAGCAATATAGATATCTCCCCTCCTTGTCCTAAACAATAAATTCATTTTTGAGCAAATTTGTGGGATTACACTGGGTATGTTGTTGTATTTCTTTAAGCTTGAATTATTACTATGTTTAAACTAGTCTTTTTCTACTTTCTAATGGTAATTTTCTAGTGTATTTTCTCTCTTTTGCACTCGCCCTGTATTTTGTTTTCAGCCTATTTAGTCTTTACATACTATTATGCAGGTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAAGATCATTAGGATTCTCTCACATACTGCTCTTATCTTGTGCTCGTCATTCTTATTATCCGTGTTCTACTCTCTGTGAATGATTTCTAGTCTATTGACAACTCTCTGGCTTTTTGTGCTTCACTAAGTTGTTAATCTTGTGGCACTATCTAGATTAAGAGGGTATTCATACATGAAATAATAGTGTACATAAATGTATTCTTCAATGCATATAGTTATGTTTATCAGCTGTGAATGAAGTATGATCAGGAAAATCATCTCTAGCTTGAAATATGAGTTGGTTTAATATAGCTCCCTCAAGATTTTTGTGGACACAGACTGTTCTAGTAGAAATAAACGCATACCCTCCTACTGGTGGACAAAAGCACATCCTTGTTGACTCATAGTTAATGGATAGGTAGAAAGACCAAATCTTTGCCTATGTTGGAATATGAAGTGGAGGTGTGATTATTCTAGCTAAATTGATCTTCTCATTTTAGAACACTCAAATTAGTTAAAACTTGTGGCTTGAATGTTGGTTCTCGTGCCTATTAGCTTTCATTTTTCTCATTCAGTAAAGCTACATCAACTAACTTATACCTTATACAGGGTCACGAGGTTGATGCATTTGGTATTGGTAC-TCATTTAGTTACCTGTTATGCTCAAGC</genome_strand>
        <mrna_strand>TGGCAGCTGGAAAGCCTGTTTGGAAATCCCACTTCCGTGGGACCCACTTCCCATGCCTTTGTTAGCTCATTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGATGAGATCATAGAGAAAATCACTTAAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGACAAATTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACTTATTAGGTGGAATTTTCAGTGAGACAAACCAAAGTGAGTTAGCAGCTTTCGCCTCATATGCACTTGCATTTNCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT...............................................................................................................................................................................................................................................................................................................GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGCTTTTGGNAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACGAGGTTGATGCATTTGGTATTGGTACACCATTTAG-TACCTGTTATGCTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236639" ref_strand="+" ref_description="SGN-E236639 [cLED-13-H20]">
      <seq>ttcaacatcataatggttctagtgtttgtgaggattttgttagtctggtacagacatggcttgataaattaaagtggtcacacttattgggtggaattttcagcgagacaaatcaaagtgagttagccgctttcgcctcgtatgcacttgcatttcctggaagttttttggcccttgtagacacttatgatgtcatgagaagtggtcttccaaatttttgtgcagttgctcttgcacttaatgatttggggtataaagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcactaaataaacaaggtcacgaggttgatgcatttggtattggtactcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="122928" stop="119086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122628" g_stop="122555" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122554" i_stop="121695" i_length="860">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121694" g_stop="121578" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="191" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121577" i_stop="121275" i_length="303">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121274" g_stop="121216" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="250" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121215" i_stop="120188" i_length="1028">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120187" g_stop="120013" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="425" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119423" g_stop="119386" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="463" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E236639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122628" e_stop="122555"/>
          <exon e_start="121694" e_stop="121578"/>
          <exon e_start="121274" e_stop="121216"/>
          <exon e_start="120187" e_stop="120013"/>
          <exon e_start="119423" e_stop="119386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAGGTATTAATCATCTCATTCTTTTGATGCACTAGTTAGATCATCAAAAAAAAAAAAATTATTGAAGTCTTCCATTTGATTTTTTTTCTTGGAATCTGACCATTTCGGTTTATGCATTCTGATAAATCATATTGGTTCTCTATATTGGTATCACCTTTTTCATTTCAAATATCATTTAGCGTTGACTTCAATTTTCACCTTTTCATTTCAATATACTGAACTAAGCTCCTAGTCTTCCTTACCAAACCTGCTCAAAATCCACACCGTCAAGAGCATATGTGGTTTGAGTGACTGTCAGAGTGTCAATTCTTGTCAGTGTTTAATAAAGTAGGCCTAACATAGAAAACCTGAGGGAGTTTATGTTACAATTTGATTGCCAAAAGGGAGTATGATGTATAATTCCTTCATTTAATTCTGCTTAACCCCTATGGATAGCTGAACTCGTAGCCAGAATACTGGACATGTGCCTAATGTGTATGATTCCACTGAGATAAACTATTTCCTCTCGGACGATTTGTGTGCTTAGAGGTAACTATGATGCTAGGTTGTGCCCACCCGTCCTCCCCAAAAAGGAATAAATAATGCTACTCAGGGGTTGCATACCATTACAAAGAGAATCTGCATGTTTTTCATGATTGATAACAATGAAATATCTTTGTTGCCAAGTCTTCTCTTAGTACTCTAACAATGAGGCTGGAAATCTATTATGAATCTCATGTAGGCCTTCCCTTAATTTTGCATGAAGTTTAAAAATCCTTGTAGCATCATTAGGATATATCAATATAGAACATTACTCTGGAATCTGCTTCTCTTCCATTTTGAGCATGAATGTCATTGATGTGATAACTCTTTGATCTTTTCAGTGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGATGTAAGTACAACTTGTGGACATATTCTTTTCCTCTGTATTCTGTGATATTTGGCTTGGCCATCTAAAACTATACACATGGATTTTGTAGAGACAAAACTTAGTCAATAATCTTACTTTGAAAGAGAAAAGGGTACTCGTCATGATATTTATATATCAGGCTAGACATATAATCTTTTTGTATTGGAAGTTCGAAATAATATTCAGCTAGTAATGTTGTTTCGATTAAGTTGTACTTATGCTGCATCCCCCTTTGTTCTTCATTTACAATGTGCTCTTTGATAACGTTTGAACGTACTTTAACAGGTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGGGTAAGCTGTTTGCATGATGAATTCTATTTAGATTGTAAAATTGCCTTTCTTTTATGCATGTCTTGGCCTCATGTGATCCTTAATATTCCGGAAGGGGAATGGTATGCCAACTAGAATTCCTAATTTTTCAATTTTGTTAATATGATAGTTTTAAACTTGTGTTATTTTGTTTTGTTCATGAACGTGAAAGAATAACTAGTCTAGAATGAAATCCTTGGATTTTGAAACAGCTAAGTGTGAATCTGTCCCCCACATCCACCTTTTAATACAGCAAGAGGTGCAAACACGCAAAGTTGTCCAGGGTCATCAATGGTTCTAGGACCTATTGTCCATGAGATACTTCCATCCTAGTTTGAGAATCATGTGCCATTCCTCTTAGAGTTTTCATGATGATATGTAATTTCATTTATTTTAATTATATATGTGTGGACCTAGCAAGGGAGGGTTAACCTAGTGGAAAGGAAAGGACTCTCCACATCAACCTTGAGGTTGGAGTTCAAGTTACCTATGGAACAAAGTAGGAACCGGTGATTATCGAGGCCTGGGCAAAAGGGGTTCCTGGTGGGGAGGGAGGAAGATAGTTGTCCATAGCTAAAAGAAGGTTTATATATGTGGACCTCGTTGATTAGATGAACCACACATGTACTTAAACATATACTTTCTTCAGACAATCTTGGTGTGTTATTAATGAAAGGTATTTACTTATCAAAAAAACGGAACGCACCTCTTATTTACAATTGATGGTGCAGAACCTTTCTATTTCATAATCACACAAGATATATACATTTTCTTAACGAAGAGCAATATAGATATCTCCCCTCCTTGTCCTAAACAATAAATTCATTTTTGAGCAAATTTGTGGGATTACACTGGGTATGTTGTTGTATTTCTTTAAGCTTGAATTATTACTATGTTTAAACTAGTCTTTTTCTACTTTCTAATGGTAATTTTCTAGTGTATTTTCTCTCTTTTGCACTCGCCCTGTATTTTGTTTTCAGCCTATTTAGTCTTTACATACTATTATGCAGGTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAAGTAAGATCATTAGGATTCTCTCACATACTGCTCTTATCTTGTGCTCGTCATTCTTATTATCCGTGTTCTACTCTCTGTGAATGATTTCTAGTCTATTGACAACTCTCTGGCTTTTTGTGCTTCACTAAGTTGTTAATCTTGTGGCACTATCTAGATTAAGAGGGTATTCATACATGAAATAATAGTGTACATAAATGTATTCTTCAATGCATATAGTTATGTTTATCAGCTGTGAATGAAGTATGATCAGGAAAATCATCTCTAGCTTGAAATATGAGTTGGTTTAATATAGCTCCCTCAAGATTTTTGTGGACACAGACTGTTCTAGTAGAAATAAACGCATACCCTCCTACTGGTGGACAAAAGCACATCCTTGTTGACTCATAGTTAATGGATAGGTAGAAAGACCAAATCTTTGCCTATGTTGGAATATGAAGTGGAGGTGTGATTATTCTAGCTAAATTGATCTTCTCATTTTAGAACACTCAAATTAGTTAAAACTTGTGGCTTGAATGTTGGTTCTCGTGCCTATTAGCTTTCATTTTTCTCATTCAGTAAAGCTACATCAACTAACTTATACCTTATACAGGGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTT</genome_strand>
        <mrna_strand>TTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT...............................................................................................................................................................................................................................................................................................................GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240891" ref_strand="+" ref_description="SGN-E240891 [cLED-24-E21]">
      <seq>ttcaacatcataatggttctagtgtttgtgaggattttgttagtctggtacagacatggcttgataaattaaagtggtcacacttattgggtggaattttcagcgagacaaatcaaagtgagttagccgctttcgcctcgtatgcacttgcatttcctggaagttttttggcccttgtagacacttatgatgtcatgagaagtggtcttccaaatttttgtgcagttgctcttgcacttaatgatttggggtataaagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatgatcttaatgaagaaactctggatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="122928" stop="119724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122628" g_stop="122555" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122554" i_stop="121695" i_length="860">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121694" g_stop="121578" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="191" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121577" i_stop="121275" i_length="303">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121274" g_stop="121216" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="250" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121215" i_stop="120188" i_length="1028">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120187" g_stop="120024" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="414" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E240891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122628" e_stop="122555"/>
          <exon e_start="121694" e_stop="121578"/>
          <exon e_start="121274" e_stop="121216"/>
          <exon e_start="120187" e_stop="120024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAGGTATTAATCATCTCATTCTTTTGATGCACTAGTTAGATCATCAAAAAAAAAAAAATTATTGAAGTCTTCCATTTGATTTTTTTTCTTGGAATCTGACCATTTCGGTTTATGCATTCTGATAAATCATATTGGTTCTCTATATTGGTATCACCTTTTTCATTTCAAATATCATTTAGCGTTGACTTCAATTTTCACCTTTTCATTTCAATATACTGAACTAAGCTCCTAGTCTTCCTTACCAAACCTGCTCAAAATCCACACCGTCAAGAGCATATGTGGTTTGAGTGACTGTCAGAGTGTCAATTCTTGTCAGTGTTTAATAAAGTAGGCCTAACATAGAAAACCTGAGGGAGTTTATGTTACAATTTGATTGCCAAAAGGGAGTATGATGTATAATTCCTTCATTTAATTCTGCTTAACCCCTATGGATAGCTGAACTCGTAGCCAGAATACTGGACATGTGCCTAATGTGTATGATTCCACTGAGATAAACTATTTCCTCTCGGACGATTTGTGTGCTTAGAGGTAACTATGATGCTAGGTTGTGCCCACCCGTCCTCCCCAAAAAGGAATAAATAATGCTACTCAGGGGTTGCATACCATTACAAAGAGAATCTGCATGTTTTTCATGATTGATAACAATGAAATATCTTTGTTGCCAAGTCTTCTCTTAGTACTCTAACAATGAGGCTGGAAATCTATTATGAATCTCATGTAGGCCTTCCCTTAATTTTGCATGAAGTTTAAAAATCCTTGTAGCATCATTAGGATATATCAATATAGAACATTACTCTGGAATCTGCTTCTCTTCCATTTTGAGCATGAATGTCATTGATGTGATAACTCTTTGATCTTTTCAGTGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGATGTAAGTACAACTTGTGGACATATTCTTTTCCTCTGTATTCTGTGATATTTGGCTTGGCCATCTAAAACTATACACATGGATTTTGTAGAGACAAAACTTAGTCAATAATCTTACTTTGAAAGAGAAAAGGGTACTCGTCATGATATTTATATATCAGGCTAGACATATAATCTTTTTGTATTGGAAGTTCGAAATAATATTCAGCTAGTAATGTTGTTTCGATTAAGTTGTACTTATGCTGCATCCCCCTTTGTTCTTCATTTACAATGTGCTCTTTGATAACGTTTGAACGTACTTTAACAGGTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGGGTAAGCTGTTTGCATGATGAATTCTATTTAGATTGTAAAATTGCCTTTCTTTTATGCATGTCTTGGCCTCATGTGATCCTTAATATTCCGGAAGGGGAATGGTATGCCAACTAGAATTCCTAATTTTTCAATTTTGTTAATATGATAGTTTTAAACTTGTGTTATTTTGTTTTGTTCATGAACGTGAAAGAATAACTAGTCTAGAATGAAATCCTTGGATTTTGAAACAGCTAAGTGTGAATCTGTCCCCCACATCCACCTTTTAATACAGCAAGAGGTGCAAACACGCAAAGTTGTCCAGGGTCATCAATGGTTCTAGGACCTATTGTCCATGAGATACTTCCATCCTAGTTTGAGAATCATGTGCCATTCCTCTTAGAGTTTTCATGATGATATGTAATTTCATTTATTTTAATTATATATGTGTGGACCTAGCAAGGGAGGGTTAACCTAGTGGAAAGGAAAGGACTCTCCACATCAACCTTGAGGTTGGAGTTCAAGTTACCTATGGAACAAAGTAGGAACCGGTGATTATCGAGGCCTGGGCAAAAGGGGTTCCTGGTGGGGAGGGAGGAAGATAGTTGTCCATAGCTAAAAGAAGGTTTATATATGTGGACCTCGTTGATTAGATGAACCACACATGTACTTAAACATATACTTTCTTCAGACAATCTTGGTGTGTTATTAATGAAAGGTATTTACTTATCAAAAAAACGGAACGCACCTCTTATTTACAATTGATGGTGCAGAACCTTTCTATTTCATAATCACACAAGATATATACATTTTCTTAACGAAGAGCAATATAGATATCTCCCCTCCTTGTCCTAAACAATAAATTCATTTTTGAGCAAATTTGTGGGATTACACTGGGTATGTTGTTGTATTTCTTTAAGCTTGAATTATTACTATGTTTAAACTAGTCTTTTTCTACTTTCTAATGGTAATTTTCTAGTGTATTTTCTCTCTTTTGCACTCGCCCTGTATTTTGTTTTCAGCCTATTTAGTCTTTACATACTATTATGCAGGTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCAC</genome_strand>
        <mrna_strand>TTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT...............................................................................................................................................................................................................................................................................................................GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708579" ref_strand="+" ref_description="SGN-E708579 [FA36AF05]">
      <seq>gtttattgctaattttaaatttactgaggatgagatagctttcatcaggtcatcgttgccatcgtcatgtgaggatggcttctttgaataccttcgaagacttgactgttcagatattgagatatattctatttctgaaggatcagtagtttttcccaaggtaccgctgatgaggattgaaggaccagttgctgtggttcaactactggaaacaccatttgtaaacctcataaattatgcatcactagttactactaatgctgcaagacaccgtttcgttgctggaaggtccaaaatattgcttgaatttgggcttaggagagcacagggtcctgatggtggtatatcagcatccaagtattgctacatgggtggatttgatgcgacaagcaatgtggcagctggaaagctgtttggaatcccactccgtgggacacattcccatgcctttgttagctcatttctgagcccagatgagatcatagagaaatcacttcaacatcataatggttctagtgtttgtgaggattttgttagtctggtacagacatggcttgataaattaaagtggtcacacttattgggtggaattttcagcgagacaaatcaaagtgagttagccgctttcgcctcgtatgcacttgcatttcctggaagttttttggcccttgtagacacttatgatgtcatgagaagtggtcttccaaatttttgtgcagttgctcttgcacttaatgatttggggtataaagcagtgggcattagactagactctggtgatcttgcttatcagtcatgtgaagctaggaaattcttttgtgctattgagaaagaatttggattgcctggttttgcaaagacgagtatcacagctagcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="125735" stop="119750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125435" g_stop="125363" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125362" i_stop="124488" i_length="875">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124487" g_stop="124368" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="193" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124367" i_stop="124248" i_length="120">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124247" g_stop="124113" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="328" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124112" i_stop="124033" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124032" g_stop="123971" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="390" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123970" i_stop="123624" i_length="347">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123623" g_stop="123548" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="466" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123547" i_stop="122657" i_length="891">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122656" g_stop="122555" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="568" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122554" i_stop="121695" i_length="860">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121694" g_stop="121578" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="685" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="121577" i_stop="121275" i_length="303">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="121274" g_stop="121216" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="744" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="121215" i_stop="120188" i_length="1028">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="120187" g_stop="120050" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="882" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E708579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125435" e_stop="125363"/>
          <exon e_start="124487" e_stop="124368"/>
          <exon e_start="124247" e_stop="124113"/>
          <exon e_start="124032" e_stop="123971"/>
          <exon e_start="123623" e_stop="123548"/>
          <exon e_start="122656" e_stop="122555"/>
          <exon e_start="121694" e_stop="121578"/>
          <exon e_start="121274" e_stop="121216"/>
          <exon e_start="120187" e_stop="120050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTGCTAATTTTAAATTTACTGAGGATGAGATAGCTTTCATCAGGTCATCGTTGCCATCGTCATGTGAGGTAAAGTTGTTATTAACAAGCAAATATGGAGACATTATGTGGTGAAAATCAAGATAGCAAGATTGATATCAAGAATGGTCTCTTTTAATGAATCTTTCATGATACGTTGAGCCCTTTGTGGGTGATTGGAAACTTTCATATCCAAGATGGACCACAACCCCATTCTTGATATCAATCTTGCTATCTTGATTTGCACCACATATGTGTTGAACTTTTTGTGCTGATATATTGAATTCTGCTATCTGAATTAAGATATCATGTGGTCATTTGTTTATCCTTTACTCCTTTTCTATTATCCTCTGTTTTTGGATCTTTCTAAGGGTATTATTCAAATCGCCTGTAAAATTTGGGAACAAATGCTTTCTTGATGAGTTTATCTTCCATTGGCCAAAATATGATCATAAACAATTAATGCAACTGTACTTTTTCTTTGGGAATCCCTGCCTATTTCATAAACATGTCATCCCAGTATGTTTGGGATAATCAAGCTGTGACTGATGCTCCATCTGGTCATGCGTTATACTACTTCATCGTTCCATCTTGTTTATTCACTTCTGGTTTGGCACAATTTTAGAACAGAATATTAGTATGCGCTGTTCAATATTTGTTTAGGAGCATGTGGGCCCATAGTTTGACTTCTGTGTTGATGACAAATAGATTAAAAGATGAAATTCGATTGGAAATGTAAAAGTAAATCTTTAATGAAACTATTGTGGTATTTAAAATGTCTTCGCACTTTATACTTATTAAAATTGATTGGGAAATCTAAAAGGGAAAGTATGTGGGAGAATGGAGTGCTTCTTCAGGGAATATGTTTCTGTTTACTTTAAAGAATTTTTTGCTATGCTGAGAGCATATTTAAATGGATTATGTAGGATGGCTTCTTTGAATACCTTCGAAGACTTGACTGTTCAGATATTGAGATATATTCTATTTCTGAAGGATCAGTAGTTTTTCCCAAGGTACCGCTGATGAGGATTGAAGGACCAGTTGCTGTGAGTCACAATAACACTATCCTTTATTAGTGCTTTCTTTTGAAGCATCTCAACAGGGTTGTCTGTTGGATCTTCTCATGTACATCTCTAATAAGCTTAATGATTGCTTGTGTCTCAAAGGTGGTTCAACTACTGGAAACACCATTTGTAAACCTCATAAATTATGCATCACTAGTTACTACTAATGCTGCAAGACACCGTTTCGTTGCTGGAAGGTCCAAAATATTGCTTGAATTTGGGCTTAGGAGAGCACAGGTTGTTTATCTTTCCTATTATCATCTTTATATTTTATACATGTACAAACTGTGAACAAACTTTTGTACCTTCATGAGTAGGGTCCTGATGGTGGTATATCAGCATCCAAGTATTGCTACATGGGTGGATTTGATGCGACAAGGTGATTTCGTGTTTATTTCACTGTGTCTCTATGAAATGCATCATCTACTTATCTTTTTCCAATGATCTAACCAGAAAAATAATCATTCAAGAAAGAATTTGATCCGTAAGATGGATGGTTACAGTTGATAAAAAACTATGGTGTACTTTTACGTTTACATGCTGCATTATGGATTGCTGCAACCTAATGTTATATCTTTTGCTGGTTATGTTTATCATTTTGATAAGGAAATAAAATTTCTTTTTGTAAGTTAGAATGCTGAGACATTATTTTATTCCTGTTGGTGTTTTCTTTCTTTTTAATCATAGCCAAGACTGGAGGTTCACTGTTTCTTTGTGATTTGACAGCAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCCGTGGGACACATTCCCATGCCTTTGTTAGCTCATTTCTGGTAGGTGCAACCTTCAAAGATCTAGTTTATAGTCAAAGCATAGTAAGAAACATGTCTTAGGATAGTAAAGTGCTCCGTTCAAATTCCCATTTTAGTCCCTTATACGAATGTTAGTTTGTCTTCAGTTACTCATCTATTGTTATTATTATCATTTTTCATTATTACAGTCATTTTGAAGGTATAATTACCACATCTATTTGCTTGCTGGCCAACTTAATGTAGACATAATCATTTCATCTGTAACACATTTGATGACAATATTATGAATTTAATACTGAAAAGACGTTCTTGGCTGTTAAACAAATTACTTAAATTGTTTGATAGAGTCATTCACTATTGTAAGTGGAATGCAAGTGGTTTTTTTTGCTCTTATGGCTCCATATGTATTGATAGGGTACATAAATGCTTGTATATACTCAATTGGTTAAGTGACAATTGTAGTTTCTACCTCAATGTCATTGAGTGGCATCAGTTAAATATGTTAGTCAATGCATAATTGCACATAGCTCAATCACTAACTCATATGAAATTATGTGTATTGGAATGGCAAGCTTAGAGCTAATTATTGTTATACATATGATAAAATTATTTTCTGTCCTGACTTATCAAAAAATACATGATCGATTATCCAGGCTTCAGCTAGAATCCTTAGTAGATGTAATTATGAACTCATCATGTCATGTTCTCTGTGGATACTAATTTCAAGTTTTGTTACTATCAATTGTTTTGTCATGTGCACGTTATCTTGCTTATTGATGAATATAAAGACAAGTAAATTAAGTACTCAAATGTTCTGTAGATGCCTAGTATTTCTTTTTCTCTAGATTGTGCACTCAACATCTTCTACTTGCTTGAAGTTATCTGGTATTTAACTTAGTCCTTATGATGCAGAGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAGGTATTAATCATCTCATTCTTTTGATGCACTAGTTAGATCATCAAAAAAAAAAAAATTATTGAAGTCTTCCATTTGATTTTTTTTCTTGGAATCTGACCATTTCGGTTTATGCATTCTGATAAATCATATTGGTTCTCTATATTGGTATCACCTTTTTCATTTCAAATATCATTTAGCGTTGACTTCAATTTTCACCTTTTCATTTCAATATACTGAACTAAGCTCCTAGTCTTCCTTACCAAACCTGCTCAAAATCCACACCGTCAAGAGCATATGTGGTTTGAGTGACTGTCAGAGTGTCAATTCTTGTCAGTGTTTAATAAAGTAGGCCTAACATAGAAAACCTGAGGGAGTTTATGTTACAATTTGATTGCCAAAAGGGAGTATGATGTATAATTCCTTCATTTAATTCTGCTTAACCCCTATGGATAGCTGAACTCGTAGCCAGAATACTGGACATGTGCCTAATGTGTATGATTCCACTGAGATAAACTATTTCCTCTCGGACGATTTGTGTGCTTAGAGGTAACTATGATGCTAGGTTGTGCCCACCCGTCCTCCCCAAAAAGGAATAAATAATGCTACTCAGGGGTTGCATACCATTACAAAGAGAATCTGCATGTTTTTCATGATTGATAACAATGAAATATCTTTGTTGCCAAGTCTTCTCTTAGTACTCTAACAATGAGGCTGGAAATCTATTATGAATCTCATGTAGGCCTTCCCTTAATTTTGCATGAAGTTTAAAAATCCTTGTAGCATCATTAGGATATATCAATATAGAACATTACTCTGGAATCTGCTTCTCTTCCATTTTGAGCATGAATGTCATTGATGTGATAACTCTTTGATCTTTTCAGTGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGATGTAAGTACAACTTGTGGACATATTCTTTTCCTCTGTATTCTGTGATATTTGGCTTGGCCATCTAAAACTATACACATGGATTTTGTAGAGACAAAACTTAGTCAATAATCTTACTTTGAAAGAGAAAAGGGTACTCGTCATGATATTTATATATCAGGCTAGACATATAATCTTTTTGTATTGGAAGTTCGAAATAATATTCAGCTAGTAATGTTGTTTCGATTAAGTTGTACTTATGCTGCATCCCCCTTTGTTCTTCATTTACAATGTGCTCTTTGATAACGTTTGAACGTACTTTAACAGGTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGGGTAAGCTGTTTGCATGATGAATTCTATTTAGATTGTAAAATTGCCTTTCTTTTATGCATGTCTTGGCCTCATGTGATCCTTAATATTCCGGAAGGGGAATGGTATGCCAACTAGAATTCCTAATTTTTCAATTTTGTTAATATGATAGTTTTAAACTTGTGTTATTTTGTTTTGTTCATGAACGTGAAAGAATAACTAGTCTAGAATGAAATCCTTGGATTTTGAAACAGCTAAGTGTGAATCTGTCCCCCACATCCACCTTTTAATACAGCAAGAGGTGCAAACACGCAAAGTTGTCCAGGGTCATCAATGGTTCTAGGACCTATTGTCCATGAGATACTTCCATCCTAGTTTGAGAATCATGTGCCATTCCTCTTAGAGTTTTCATGATGATATGTAATTTCATTTATTTTAATTATATATGTGTGGACCTAGCAAGGGAGGGTTAACCTAGTGGAAAGGAAAGGACTCTCCACATCAACCTTGAGGTTGGAGTTCAAGTTACCTATGGAACAAAGTAGGAACCGGTGATTATCGAGGCCTGGGCAAAAGGGGTTCCTGGTGGGGAGGGAGGAAGATAGTTGTCCATAGCTAAAAGAAGGTTTATATATGTGGACCTCGTTGATTAGATGAACCACACATGTACTTAAACATATACTTTCTTCAGACAATCTTGGTGTGTTATTAATGAAAGGTATTTACTTATCAAAAAAACGGAACGCACCTCTTATTTACAATTGATGGTGCAGAACCTTTCTATTTCATAATCACACAAGATATATACATTTTCTTAACGAAGAGCAATATAGATATCTCCCCTCCTTGTCCTAAACAATAAATTCATTTTTGAGCAAATTTGTGGGATTACACTGGGTATGTTGTTGTATTTCTTTAAGCTTGAATTATTACTATGTTTAAACTAGTCTTTTTCTACTTTCTAATGGTAATTTTCTAGTGTATTTTCTCTCTTTTGCACTCGCCCTGTATTTTGTTTTCAGCCTATTTAGTCTTTACATACTATTATGCAGGTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGA</genome_strand>
        <mrna_strand>GTTTATTGCTAATTTTAAATTTACTGAGGATGAGATAGCTTTCATCAGGTCATCGTTGCCATCGTCATGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCTTCTTTGAATACCTTCGAAGACTTGACTGTTCAGATATTGAGATATATTCTATTTCTGAAGGATCAGTAGTTTTTCCCAAGGTACCGCTGATGAGGATTGAAGGACCAGTTGCT........................................................................................................................GTGGTTCAACTACTGGAAACACCATTTGTAAACCTCATAAATTATGCATCACTAGTTACTACTAATGCTGCAAGACACCGTTTCGTTGCTGGAAGGTCCAAAATATTGCTTGAATTTGGGCTTAGGAGAGCACAG................................................................................GGTCCTGATGGTGGTATATCAGCATCCAAGTATTGCTACATGGGTGGATTTGATGCGACAAG...........................................................................................................................................................................................................................................................................................................................................................CAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCCGTGGGACACATTCCCATGCCTTTGTTAGCTCATTTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT...............................................................................................................................................................................................................................................................................................................GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E582160" ref_strand="+" ref_description="SGN-E582160 [7793]">
      <seq>acgaggcaagcaatgtggcagctggaaagctgtttggaatcccactccggtgggacacattcccatgcctttgttagctcatttatgagcccagatgagaccatagagaaatcacttaaacatcataatggttctaggtgtttgtgaggatttagttagtctgggtacagacatgggcttgacaaattaaagtggtcacacttattaggtggaattgtcagtgagacaaaccaaagtgagttagcagctttcgcctcatatgcactatgcatttcctgggaagttggtttggcccttgtagacatcttatgatgtcatgagaagtggtcttccaaatttcttgtgcagttgctcttgcacttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="123928" stop="120923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123623" g_stop="123548" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="87" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123547" i_stop="122657" i_length="891">
            <donor d_prob="0.956" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122656" g_stop="122555" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="192" r_length="105" r_score="0.902"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122554" i_stop="121695" i_length="860">
            <donor d_prob="0.947" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121694" g_stop="121578" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="313" r_length="121" r_score="0.872"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121577" i_stop="121275" i_length="303">
            <donor d_prob="0.994" d_score="0.80"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121274" g_stop="121223" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="366" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E582160" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123623" e_stop="123548"/>
          <exon e_start="122656" e_stop="122555"/>
          <exon e_start="121694" e_stop="121578"/>
          <exon e_start="121274" e_stop="121223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCC-GTGGGACACATTCCCATGCCTTTGTTAGCTCATTTCTGGTAGGTGCAACCTTCAAAGATCTAGTTTATAGTCAAAGCATAGTAAGAAACATGTCTTAGGATAGTAAAGTGCTCCGTTCAAATTCCCATTTTAGTCCCTTATACGAATGTTAGTTTGTCTTCAGTTACTCATCTATTGTTATTATTATCATTTTTCATTATTACAGTCATTTTGAAGGTATAATTACCACATCTATTTGCTTGCTGGCCAACTTAATGTAGACATAATCATTTCATCTGTAACACATTTGATGACAATATTATGAATTTAATACTGAAAAGACGTTCTTGGCTGTTAAACAAATTACTTAAATTGTTTGATAGAGTCATTCACTATTGTAAGTGGAATGCAAGTGGTTTTTTTTGCTCTTATGGCTCCATATGTATTGATAGGGTACATAAATGCTTGTATATACTCAATTGGTTAAGTGACAATTGTAGTTTCTACCTCAATGTCATTGAGTGGCATCAGTTAAATATGTTAGTCAATGCATAATTGCACATAGCTCAATCACTAACTCATATGAAATTATGTGTATTGGAATGGCAAGCTTAGAGCTAATTATTGTTATACATATGATAAAATTATTTTCTGTCCTGACTTATCAAAAAATACATGATCGATTATCCAGGCTTCAGCTAGAATCCTTAGTAGATGTAATTATGAACTCATCATGTCATGTTCTCTGTGGATACTAATTTCAAGTTTTGTTACTATCAATTGTTTTGTCATGTGCACGTTATCTTGCTTATTGATGAATATAAAGACAAGTAAATTAAGTACTCAAATGTTCTGTAGATGCCTAGTATTTCTTTTTCTCTAGATTGTGCACTCAACATCTTCTACTTGCTTGAAGTTATCTGGTATTTAACTTAGTCCTTATGATGCAGAGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTA-GTGTTTGTGAGGATTTTGTTAGTCT-GGTACAGACAT-GGCTTGATAAATTAAAGGTATTAATCATCTCATTCTTTTGATGCACTAGTTAGATCATCAAAAAAAAAAAAATTATTGAAGTCTTCCATTTGATTTTTTTTCTTGGAATCTGACCATTTCGGTTTATGCATTCTGATAAATCATATTGGTTCTCTATATTGGTATCACCTTTTTCATTTCAAATATCATTTAGCGTTGACTTCAATTTTCACCTTTTCATTTCAATATACTGAACTAAGCTCCTAGTCTTCCTTACCAAACCTGCTCAAAATCCACACCGTCAAGAGCATATGTGGTTTGAGTGACTGTCAGAGTGTCAATTCTTGTCAGTGTTTAATAAAGTAGGCCTAACATAGAAAACCTGAGGGAGTTTATGTTACAATTTGATTGCCAAAAGGGAGTATGATGTATAATTCCTTCATTTAATTCTGCTTAACCCCTATGGATAGCTGAACTCGTAGCCAGAATACTGGACATGTGCCTAATGTGTATGATTCCACTGAGATAAACTATTTCCTCTCGGACGATTTGTGTGCTTAGAGGTAACTATGATGCTAGGTTGTGCCCACCCGTCCTCCCCAAAAAGGAATAAATAATGCTACTCAGGGGTTGCATACCATTACAAAGAGAATCTGCATGTTTTTCATGATTGATAACAATGAAATATCTTTGTTGCCAAGTCTTCTCTTAGTACTCTAACAATGAGGCTGGAAATCTATTATGAATCTCATGTAGGCCTTCCCTTAATTTTGCATGAAGTTTAAAAATCCTTGTAGCATCATTAGGATATATCAATATAGAACATTACTCTGGAATCTGCTTCTCTTCCATTTTGAGCATGAATGTCATTGATGTGATAACTCTTTGATCTTTTCAGTGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACT-TGCATTTCCT-GGAAGTT-TTTTGGCCCTTGTAGACA-CTTATGATGTAAGTACAACTTGTGGACATATTCTTTTCCTCTGTATTCTGTGATATTTGGCTTGGCCATCTAAAACTATACACATGGATTTTGTAGAGACAAAACTTAGTCAATAATCTTACTTTGAAAGAGAAAAGGGTACTCGTCATGATATTTATATATCAGGCTAGACATATAATCTTTTTGTATTGGAAGTTCGAAATAATATTCAGCTAGTAATGTTGTTTCGATTAAGTTGTACTTATGCTGCATCCCCCTTTGTTCTTCATTTACAATGTGCTCTTTGATAACGTTTGAACGTACTTTAACAGGTCATGAGAAGTGGTCTTCCAAATTT-TTGTGCAGTTGCTCTTGCACTTAATG</genome_strand>
        <mrna_strand>CAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCCGGTGGGACACATTCCCATGCCTTTGTTAGCTCATTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGATGAGACCATAGAGAAATCACTTAAACATCATAATGGTTCTAGGTGTTTGTGAGGATTTAGTTAGTCTGGGTACAGACATGGGCTTGACAAATTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACACTTATTAGGTGGAATTGTCAGTGAGACAAACCAAAGTGAGTTAGCAGCTTTCGCCTCATATGCACTATGCATTTCCTGGGAAGTTGGTTTGGCCCTTGTAGACATCTTATGAT...............................................................................................................................................................................................................................................................................................................GTCATGAGAAGTGGTCTTCCAAATTTCTTGTGCAGTTGCTCTTGCACTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390441" ref_strand="+" ref_description="SGN-E390441 [TUS-39-H24](-)">
      <seq>catcaaaaagtaggtttgtgcgaggggaatgcattcacaaatgccaaagtggctgggaatctacaagttaaccaagacgcctcgttaaatgctattttcaacccaactgaaaattgtacagaaactaaggtaacaccaccgataactatgtcaaatataaaccggtcagacagtgcgtttgagcttgagtcatcgatgaatattcaccttgatccctttcagctctcaagatctaccagcaaggaaatttggagggaggatgacttacctttatatggtatgaatgagctaacgaccaaaactgcatcaactggatcaaatctggcattctcagttcccctagatacggatgcatctaacctgaagagaagcactcgggaggcctgcttgcttcgatatcagtttggtgctgtgaatgaaaccaatctggattgtgaccaacttctttcccaacaactgtatagcaacttctgaattttggcctgcatcgccttgctggattttgttgaagtaatgagacatgcattttgctgcttaggacgtttaatgttgttaacttttgggctcactagccactgtaatgaatgaatggaatataaatgaaaagattggactagtttctatcttgttatgaaatacgaaaattactactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="128699" stop="127129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128399" g_stop="128157" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128156" i_stop="128046" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128045" g_stop="127976" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="313" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127975" i_stop="127886" i_length="90">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127885" g_stop="127735" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="464" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127734" i_stop="127618" i_length="117">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127617" g_stop="127418" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="664" r_length="200" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E390441" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128399" e_stop="128157"/>
          <exon e_start="128045" e_stop="127976"/>
          <exon e_start="127885" e_stop="127735"/>
          <exon e_start="127617" e_stop="127418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAAAAGTAGGTTTGTGCGAGGGGAATGCATTCACAAATGCCAAAGTGGCTGGGAATCTACAAGTTAACCAAGACGCCTCGTTAAATGCTATTTTCAACCCAACTGAAAATTGTACAGAAACTAAGGTAACACCACCGATAACTATGTCAAATATAAACCGGTCAGACAGTGCGTTTGAGCTTGAGTCATCGATGAATATTCACCTTGATCCCTTTCAGCTCTCAAGATCTACCAGCAAGGTATGTTGGATACAAAACCTATTGGAATGCCATTTTTTATGAGGATGCAGAATTGCAGATTAAGGAATCAATTTATTTAACCATTTGACATTCACATTCTGTTTTGCGAAGGAAATTTGGAGGGAGGATGACTTACCTTTATATGGTATGAATGAGCTAACGACCAAAACTGCATCAACTGGTAGATTATTTGCTTGATATCCTTGCCTAGTTGACAACTTTTGCCTTGTATCCAGGTCTCTTTACCATTTTATATTTCATTGTATTATAGGATCAAATCTGGCATTCTCAGTTCCCCTAGATACGGATGCATCTAACCTGAAGAGAAGCACTCGGGAGGCCTGCTTGCTTCGATATCAGTTTGGTGCTGTGAATGAAACCAATCTGGATTGTGACCAACTTCTTTCCCAACAACTGTATAGGTAAGTGAACTCACATTATACCCGTGCTCTTACATAGCAATGATTTTTTTTAGTCCTTGTTCTATTGTTAGTCACTTTGGAAGTACTTATGTTGACATTATCTTAAGGTGAATGCAGCAACTTCTGAATTTTGGCCTGCATCGCCTTGCTGGATTTTGTTGAAGTAATGAGACATGCATTTTGCTGCTTAGGACGTTTAATGTTGTTAACTTTTGGGCTCACTAGCCACTGTAATGAATGAATGGAATATAAATGAAAAGATTGGACTAGTTTCTATCTTGTTATGAAATACGAAAATTACTACTAGGCATAGGATA</genome_strand>
        <mrna_strand>CATCAAAAAGTAGGTTTGTGCGAGGGGAATGCATTCACAAATGCCAAAGTGGCTGGGAATCTACAAGTTAACCAAGACGCCTCGTTAAATGCTATTTTCAACCCAACTGAAAATTGTACAGAAACTAAGGTAACACCACCGATAACTATGTCAAATATAAACCGGTCAGACAGTGCGTTTGAGCTTGAGTCATCGATGAATATTCACCTTGATCCCTTTCAGCTCTCAAGATCTACCAGCAAG...............................................................................................................GAAATTTGGAGGGAGGATGACTTACCTTTATATGGTATGAATGAGCTAACGACCAAAACTGCATCAACTG..........................................................................................GATCAAATCTGGCATTCTCAGTTCCCCTAGATACGGATGCATCTAACCTGAAGAGAAGCACTCGGGAGGCCTGCTTGCTTCGATATCAGTTTGGTGCTGTGAATGAAACCAATCTGGATTGTGACCAACTTCTTTCCCAACAACTGTATAG.....................................................................................................................CAACTTCTGAATTTTGGCCTGCATCGCCTTGCTGGATTTTGTTGAAGTAATGAGACATGCATTTTGCTGCTTAGGACGTTTAATGTTGTTAACTTTTGGGCTCACTAGCCACTGTAATGAATGAATGGAATATAAATGAAAAGATTGGACTAGTTTCTATCTTGTTATGAAATACGAAAATTACTACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396789" ref_strand="+" ref_description="SGN-E396789 [TUS-43-J8]">
      <seq>ctggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataaaactgacaaggcttcaatgcttgatgaagccattgagtatcttaagcagcttcagctccaagtacagatgttgacaatgagaaacgggttaaacatgtatcctcttggcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="129990" stop="128129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129690" g_stop="129327" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129326" i_stop="129193" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129192" g_stop="129091" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="466" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129090" i_stop="129008" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129007" g_stop="128942" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="532" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128941" i_stop="128818" i_length="124">
            <donor d_prob="0.802" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128817" g_stop="128752" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="598" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128751" i_stop="128475" i_length="277">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128474" g_stop="128429" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="644" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E396789" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129690" e_stop="129327"/>
          <exon e_start="129192" e_stop="129091"/>
          <exon e_start="129007" e_stop="128942"/>
          <exon e_start="128817" e_stop="128752"/>
          <exon e_start="128474" e_stop="128429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAGGTTTGCTGCTTCTGTTTAAATTTGCTGCATGTAATTTGTTTGGTATGATGGGGAGATAAAGATATTTTTTTAGAGGATAATATAATGTAATATTGTGTTGATTGGCCCAACTTTAGTGAAATTTAAAGTTCAGATAGTTGCAAAGAACATGTAGTGTTATTTGACTCAATTCAGTATATTTCCTAGATTGGTTCTAGCTGGTTATCTGTTCATTTAACACTAGTTGATTCGATCAAGTTATATGATTTATAGCATAAGAATGTACTTTGATCTGTAGATGTTGACAATGAGAAACGGGTTAAACATGTATCCTCTTGGCCTGC</genome_strand>
        <mrna_strand>CTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAA............................................................................................................................ACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAG.....................................................................................................................................................................................................................................................................................ATGTTGACAATGAGAAACGGGTTAAACATGTATCCTCTTGGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265834" ref_strand="+" ref_description="SGN-E265834 [cLEI-11-G2]">
      <seq>aaaattaacttgatctgctcaacactgaacttgattttgctggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataagactgacaaggcttcaatgcttgatgaagccattgagtatcttaagcagcttcagctccaagtacagatgttgacaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="130029" stop="128447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129729" g_stop="129327" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129326" i_stop="129193" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129192" g_stop="129091" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="505" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129090" i_stop="129008" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129007" g_stop="128942" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="571" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128941" i_stop="128818" i_length="124">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128817" g_stop="128752" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="637" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128751" i_stop="128475" i_length="277">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128474" g_stop="128461" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="651" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E265834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129729" e_stop="129327"/>
          <exon e_start="129192" e_stop="129091"/>
          <exon e_start="129007" e_stop="128942"/>
          <exon e_start="128817" e_stop="128752"/>
          <exon e_start="128474" e_stop="128461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAGGTTTGCTGCTTCTGTTTAAATTTGCTGCATGTAATTTGTTTGGTATGATGGGGAGATAAAGATATTTTTTTAGAGGATAATATAATGTAATATTGTGTTGATTGGCCCAACTTTAGTGAAATTTAAAGTTCAGATAGTTGCAAAGAACATGTAGTGTTATTTGACTCAATTCAGTATATTTCCTAGATTGGTTCTAGCTGGTTATCTGTTCATTTAACACTAGTTGATTCGATCAAGTTATATGATTTATAGCATAAGAATGTACTTTGATCTGTAGATGTTGACAATGAG</genome_strand>
        <mrna_strand>AAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAG.....................................................................................................................................................................................................................................................................................ATGTTGACAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227089" ref_strand="+" ref_description="SGN-E227089 [cLED-1-H9]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataagactgacaaggcttcaatgcttgatgaacccattgagtatcttaagcagcttcagctccaagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="129989" stop="128454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129689" g_stop="129327" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129326" i_stop="129193" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129192" g_stop="129091" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="465" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129090" i_stop="129008" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129007" g_stop="128942" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="531" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128941" i_stop="128818" i_length="124">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128817" g_stop="128754" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="595" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E227089" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129689" e_stop="129327"/>
          <exon e_start="129192" e_stop="129091"/>
          <exon e_start="129007" e_stop="128942"/>
          <exon e_start="128817" e_stop="128754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTAC</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGCTTCAATGCTTGATGAACCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238321" ref_strand="+" ref_description="SGN-E238321 [cLED-17-M11]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataagactgacaaggcttcaatgcttgatgaagccattgagtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="129989" stop="128477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129689" g_stop="129327" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129326" i_stop="129193" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129192" g_stop="129091" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="465" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129090" i_stop="129008" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129007" g_stop="128942" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="531" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128941" i_stop="128818" i_length="124">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128817" g_stop="128777" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="572" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E238321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129689" e_stop="129327"/>
          <exon e_start="129192" e_stop="129091"/>
          <exon e_start="129007" e_stop="128942"/>
          <exon e_start="128817" e_stop="128777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCT</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390218" ref_strand="+" ref_description="SGN-E390218 [TUS-39-H24]">
      <seq>caaaattaacttgatctgctcaacactgaacttgattttgctggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcnaaaacttattccaaattcaaataagactgacaaggcttcaatgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="130030" stop="128495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129730" g_stop="129327" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129326" i_stop="129193" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129192" g_stop="129091" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="506" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129090" i_stop="129008" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129007" g_stop="128942" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="572" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128941" i_stop="128818" i_length="124">
            <donor d_prob="0.802" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128817" g_stop="128795" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="595" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E390218" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129730" e_stop="129327"/>
          <exon e_start="129192" e_stop="129091"/>
          <exon e_start="129007" e_stop="128942"/>
          <exon e_start="128817" e_stop="128795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGCTTCAATGCTTGA</genome_strand>
        <mrna_strand>CAAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCNAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGCTTCAATGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243638" ref_strand="+" ref_description="SGN-E243638 [cLED-34-J7]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggagaagaagcaggattaatgagaagatgaaagcattgcaaaaacttattccaaattcaaataagactgacaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="129989" stop="128642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129689" g_stop="129327" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129326" i_stop="129193" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129192" g_stop="129091" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="465" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129090" i_stop="129008" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129007" g_stop="128942" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="531" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128941" i_stop="128818" i_length="124">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128817" g_stop="128807" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="542" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E243638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129689" e_stop="129327"/>
          <exon e_start="129192" e_stop="129091"/>
          <exon e_start="129007" e_stop="128942"/>
          <exon e_start="128817" e_stop="128807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAGGTGAGGAGTTGCATGTCTAGCAATTTTGAATCGAGTCTTGAAATAAGTAAATAACATAAACTTTTAGCAATATAAAGCTTAAAAGATTTTTGATTTTATTATTTTCTGATGGATTTCTGGACAGACTGACAAGGC</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG............................................................................................................................ACTGACAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367884" ref_strand="+" ref_description="SGN-E367884 [TUS-22-E5]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcagttcaaccgccatctcgtaacacttccaagagaagcagagcagctgaagtgcacaatttgtctgaaaagaggataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="129989" stop="128791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129689" g_stop="129327" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129326" i_stop="129193" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129192" g_stop="129091" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="465" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129090" i_stop="129008" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129007" g_stop="128999" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="474" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E367884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129689" e_stop="129327"/>
          <exon e_start="129192" e_stop="129091"/>
          <exon e_start="129007" e_stop="128999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAGGTTTGTTTATTTTTTTGTTAATTAAGTTCATTATTGTCTGAATCGATGATTCCACGGGTTTAAATCTTGAATATGATTTACAGAGGAGAAGA</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG...................................................................................AGGATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238607" ref_strand="+" ref_description="SGN-E238607 [cLED-17-J22]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttgggggcggaagcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="129989" stop="128859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129689" g_stop="129327" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129326" i_stop="129193" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129192" g_stop="129159" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="397" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E238607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129689" e_stop="129327"/>
          <exon e_start="129192" e_stop="129159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGGCGGAAGCTTCAG</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237759" ref_strand="+" ref_description="SGN-E237759 [cLED-19-N24]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggatggtacagaggatttggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="129989" stop="128871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129689" g_stop="129327" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129326" i_stop="129193" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129192" g_stop="129171" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="385" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E237759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129689" e_stop="129327"/>
          <exon e_start="129192" e_stop="129171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAGGTATTTCTACATTTTCTACTTAATTCGTTTTGATTAATTAGTGTATTTAAGTTTTTATTTCCGAATTTGACTTTTTTACTTAATCCTGGTATATATATATATATATATTTTGTGATGATTTTTTTAATATGTAGGATGGTACAGAGGATTTGGGGG</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG......................................................................................................................................GATGGTACAGAGGATTTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233578" ref_strand="+" ref_description="SGN-E233578 [cLED-9-B12]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtttcttcctcatctgttgggaccatagattacgatccggatgagtatgaatgtgaaagtgaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="129989" stop="129024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129689" g_stop="129327" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E233578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129689" e_stop="129327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237792" ref_strand="+" ref_description="SGN-E237792 [cLED-18-K7]">
      <seq>tggactataatggccaacaacaatgtttattatcacaatgctaatttttctttgactgatcctgatcctgaaccagatgatatttctgtgtttcttcgtcatattctacttccttcttcgtcttcgtcttcatcttcatctaattttatggccctgaagagtaatgaaatgcaatattcctcatcattacctcatcttatgcctaataataatcaacagggtaatttgtcatccatgatgaattcatcagcttgcggcattttctcgtcttcctatggggtttgtaatggtgcaactactgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0064B17-kMlY4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0064B17.3" temp_strand="-" temp_description="C02HBa0064B17.3  AC215373.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0064B17 sequenced_by:kribb upload_account_name:korea">
        <position start="129989" stop="129087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129689" g_stop="129387" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0064B17.3" gen_strand="-" ref_id="SGN-E237792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0064B17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129689" e_stop="129387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTT</genome_strand>
        <mrna_strand>TGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>162</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3748" PGL_stop="191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3725" e_stop="3460"/>
            <exon e_start="3193" e_stop="3044"/>
            <exon e_start="2559" e_stop="2371"/>
            <exon e_start="2276" e_stop="2160"/>
            <exon e_start="1775" e_stop="1615"/>
            <exon e_start="878" e_stop="354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.668" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.752" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3725" e_stop="3460" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3193" e_stop="3044" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.871">
            <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2559" e_stop="2371" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.668" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2276" e_stop="2160" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.752" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2159" i_stop="1776" i_length="384"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1775" e_stop="1615" e_length="161"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="878" e_stop="354" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3725" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3723" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3713" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3697" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3653" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3632" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3526" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3180" stop="3044"/>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2538" stop="2371"/>
              <exon start="2276" stop="2160"/>
              <exon start="1775" stop="1615"/>
              <exon start="878" stop="821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2506" stop="2371"/>
              <exon start="2276" stop="2160"/>
              <exon start="1775" stop="1714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1751" stop="1615"/>
              <exon start="878" stop="497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1751" stop="1615"/>
              <exon start="878" stop="519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1640" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1638" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377851" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1638" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378127" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1637" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238253" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="804" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235301" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTAACAGTAGCTAACGATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG : GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG : ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG : GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAG : GTACATAGTACAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAG : GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</gDNA_template>
            <first_frame> P  *  Q  *  L  T  I  R  S  I  D  S  N  F  C  S  N  T  Y  N  K  Q  Q  W  R  Q  *  S  S  T  S  L  T  L  E  L  D  C  L  E  T  L  A  M  F  I  L  G  T  L  Y  P  S  A  S  G  I  F  G  L  L  F  V  W  N  L  L  *  I  S  S  L  F  L  I  L  L  T  I  S  S  N  S  I  Q  F  L  T  W :   *  T  G  C  R  M  R  G  T  M  E  G  F  V  Y  L  W  Q  S  L  K  Y  F  T  T  I  A  K  R  A  T  S  P  Y  M  M  G  I  S  L  S  R  M  T  L  T  F  P  A  R :   Q  G  F  Q  V  L  V  Q  S  *  V  L  H  *  V  A  F  L  I  F  T  K  S  D  I  S  S  K  L  R  *  G  R  T  L  S  L  M  Q  R  R  N  L  E  L  L  Q  V  F  K  I  E  W  P  R  C  M  E  A  L  Y  I  W :   T  L  T  R  I  T  W  M  N  *  V  M  A  Y  I  H  P  W  M  L  I  F  S  H  L  F  I  *  S  M  Q  K  I  P  V  I  L  E  R :   Y  I  V  Q  F  D  K  D  G  *  M  V  I  N  L  *  D  Q  P  L  K  R  L  Q  I  *  L  W  R  D  G  K  L  F  L  R  R  T  T  I  S  *  Q  P  S  *  I  T  I  L  T  *  E   : G  V  C  L  E  I  M  P  L  E  L  *  I  *  R  W  L  K  S  L  E  R  *  V  L  L  P  S  S  Q  E  V  V  G  L  W  L  C  T  V  R  M  E  L  H  K  *  S  S  W  R  T  H  A  T  K  L  V  S  L  F  N  Q  L  K  L  C  L  R  F  *  T  K  L  I  F  K  L  *  N  Q  S  E  N  D  D  L  L  S  N  M  S  R  V  L  F  I  L  Y  F  F  H  L  S  L  A  Y  A  K  R  F  S  P  S  M  *  R  P  L  K  E  M  L  V  *  I  V  L  V  T  I  V  L  L  L  L  *  C  I  S  R  S  A  Y  F  T  V  L  A  *  T  V  I  R  F  T  Y  F  N  S  N  C  V  M  P  I  I  I  T  T  K  S  V  T  S  </first_frame>
            <second_frame>  R  N  S  S  *  R  L  D  L  *  I  P  I  S  A  V  T  P  T  I  S  N  N  G  G  S  D  R  A  Q  V  L  R  *  S  W  T  A  W  K  P  *  R  C  L  F  W  E  H  Y  I  L  Q  P  R  E  F  L  G  F  C  S  F  G  T  F  Y  R  S  R  H  C  S  S  S  F  S  R  S  R  P  I  Q  F  N  F  S  P   : G  E  Q  V  A  E  *  G  V  L  W  R  G  S  F  T  Y  G  N  R  *  N  I  S  Q  L  L  Q  R  E  Q  H  H  L  T  *  W  E  F  H  S  L  V  *  H  *  H  S  P  P   : D  R  A  F  R  F  *  C  N  R  K  C  C  T  E  L  P  S  *  F  L  Q  S  Q  T  S  H  Q  S  *  G  K  A  E  P  C  P  *  C  R  E  G  T  W  N  C  C  R  S  S  R  *  S  G  P  G  V  W  R  R  C  I  Y   : G  L  *  Q  E  S  H  G  *  I  R  S  W  H  I  Y  T  H  G  C  *  S  S  P  T  S  L  S  D  L  C  R  K  S  Q  *  F  W  K   : G  T  *  Y  S  S  T  K  M  V  R  W  *  *  I  Y  K  I  N  H  *  R  G  C  K  Y  S  C  G  G  T  E  S  S  S  *  E  G  L  Q  *  V  S  S  P  H  E  S  Q  F  *  L  E  K  :  A  Y  V  W  R  *  C  P  W  S  Y  E  Y  R  D  G  *  N  R  S  K  G  R  C  C  F  Q  V  H  R  K  W  W  G  C  G  C  V  L  S  G  W  N  F  T  S  E  A  A  G  G  R  M  P  Q  S  W  F  H  F  S  T  N  *  S  Y  A  F  V  S  K  R  N  *  S  S  N  S  E  I  K  V  K  M  M  I  C  F  Q  I  C  R  E  S  S  L  F  F  I  S  F  T  F  H  W  H  M  L  S  A  F  H  Q  V  C  S  D  H  *  K  K  C  *  Y  R  *  F  *  L  Q  L  F  C  C  Y  C  N  A  F  R  E  A  L  T  L  Q  F  *  R  K  P  S  L  D  S  H  I  L  T  P  I  V  *  C  Q  L  *  L  L  L  N  L  L  L  L </second_frame>
            <third_frame>   V  T  V  A  N  D  *  I  Y  R  F  Q  F  L  Q  *  H  L  Q  *  A  T  M  A  A  V  I  E  H  K  S  Y  A  R  V  G  L  L  G  N  P  S  D  V  Y  F  G  N  T  I  S  F  S  L  G  N  F  W  A  S  V  R  L  E  P  S  I  D  L  V  I  V  P  H  P  S  H  D  L  V  Q  F  N  S  I  S  H  L  :  V  N  R  L  Q  N  E  G  Y  Y  G  G  V  R  L  L  M  A  I  V  K  I  F  H  N  Y  C  K  E  S  N  I  T  L  H  D  G  N  F  T  L  S  Y  D  T  N  I  P  R  Q  :  T  G  L  S  G  S  S  A  I  V  S  A  A  L  S  C  L  L  D  F  Y  K  V  R  H  L  I  K  V  E  V  R  P  N  L  V  L  N  A  E  K  E  L  G  I  V  A  G  L  Q  D  R  V  A  Q  V  Y  G  G  V  V  Y  M  :  D  F  D  K  N  H  M  D  E  L  G  H  G  I  Y  T  P  M  D  V  D  L  L  P  P  L  Y  L  I  Y  A  E  N  P  S  D  S  G  K  :  V  H  S  T  V  R  Q  R  W  L  D  G  D  K  F  I  R  S  T  I  E  E  V  A  N  I  A  V  E  G  R  K  A  L  L  E  K  D  Y  N  K  L  A  A  L  M  N  H  N  F  D  L  R  R :   R  M  F  G  D  N  A  L  G  A  M  N  I  E  M  V  E  I  A  R  K  V  G  A  A  S  K  F  T  G  S  G  G  A  V  V  V  Y  C  P  D  G  T  S  Q  V  K  Q  L  E  D  A  C  H  K  A  G  F  T  F  Q  P  I  K  V  M  P  S  F  L  N  E  T  D  L  Q  T  L  K  S  K  *  K  *  *  S  A  F  K  Y  V  E  S  P  L  Y  S  L  F  L  S  P  F  I  G  I  C  *  A  L  F  T  K  Y  V  A  T  I  E  R  N  A  S  I  D  S  F  S  Y  N  C  F  A  A  I  V  M  H  F  E  K  R  L  L  Y  S  F  S  V  N  R  H  *  I  H  I  F  *  L  Q  L  C  D  A  N  Y  N  Y  Y  *  I  C  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3663" stop="3460"/>
                    <exon start="3193" stop="3044"/>
                    <exon start="2559" stop="2371"/>
                    <exon start="2276" stop="2160"/>
                    <exon start="1775" stop="1615"/>
                    <exon start="878" stop="632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATMAAVIEHKSYARVGLLGNPSDVYFGNTISFSLGNFWASVRLEPSIDLVIVPHPSHDLVQFNSISHLVNRLQNEGYYGGVRLLMAIVKIFHNYCKESNITLHDGNFTLSYDTNIPRQTGLSGSSAIVSAALSCLLDFYKVRHLIKVEVRPNLVLNAEKELGIVAGLQDRVAQVYGGVVYMDFDKNHMDELGHGIYTPMDVDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDKFIRSTIEEVANIAVEGRKALLEKDYNKLAALMNHNFDLRRRMFGDNALGAMNIEMVEIARKVGAASKFTGSGGAVVVYCPDGTSQVKQLEDACHKAGFTFQPIKVMPSFLNETDLQTLKSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3725" e_stop="3460"/>
            <exon e_start="3193" e_stop="3044"/>
            <exon e_start="2559" e_stop="2371"/>
            <exon e_start="2276" e_stop="2160"/>
            <exon e_start="1775" e_stop="1615"/>
            <exon e_start="878" e_stop="490"/>
            <exon e_start="204" e_stop="191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.668" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.752" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.215" e_score="1.000"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3725" e_stop="3460" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3193" e_stop="3044" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.871">
            <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2559" e_stop="2371" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.668" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2276" e_stop="2160" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.752" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2159" i_stop="1776" i_length="384"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1775" e_stop="1615" e_length="161"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="878" e_stop="490" e_length="389"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.215">
            <gDNA_intron_boundary i_start="489" i_stop="205" i_length="285"/>
          </intron>
          <exon e_serial="7" e_score="0.714">
            <gDNA_exon_boundary e_start="204" e_stop="191" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3725" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3723" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3713" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3697" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3653" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3632" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3526" stop="3460"/>
              <exon start="3193" stop="3044"/>
              <exon start="2559" stop="2444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3180" stop="3044"/>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2538" stop="2371"/>
              <exon start="2276" stop="2160"/>
              <exon start="1775" stop="1615"/>
              <exon start="878" stop="821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2506" stop="2371"/>
              <exon start="2276" stop="2160"/>
              <exon start="1775" stop="1714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1751" stop="1615"/>
              <exon start="878" stop="497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1751" stop="1615"/>
              <exon start="878" stop="519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="785" stop="490"/>
              <exon start="204" stop="191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTAACAGTAGCTAACGATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG : GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG : ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG : GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAG : GTACATAGTACAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAG : GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACA : ACAAAATAGAACAA</gDNA_template>
            <first_frame> P  *  Q  *  L  T  I  R  S  I  D  S  N  F  C  S  N  T  Y  N  K  Q  Q  W  R  Q  *  S  S  T  S  L  T  L  E  L  D  C  L  E  T  L  A  M  F  I  L  G  T  L  Y  P  S  A  S  G  I  F  G  L  L  F  V  W  N  L  L  *  I  S  S  L  F  L  I  L  L  T  I  S  S  N  S  I  Q  F  L  T  W :   *  T  G  C  R  M  R  G  T  M  E  G  F  V  Y  L  W  Q  S  L  K  Y  F  T  T  I  A  K  R  A  T  S  P  Y  M  M  G  I  S  L  S  R  M  T  L  T  F  P  A  R :   Q  G  F  Q  V  L  V  Q  S  *  V  L  H  *  V  A  F  L  I  F  T  K  S  D  I  S  S  K  L  R  *  G  R  T  L  S  L  M  Q  R  R  N  L  E  L  L  Q  V  F  K  I  E  W  P  R  C  M  E  A  L  Y  I  W :   T  L  T  R  I  T  W  M  N  *  V  M  A  Y  I  H  P  W  M  L  I  F  S  H  L  F  I  *  S  M  Q  K  I  P  V  I  L  E  R :   Y  I  V  Q  F  D  K  D  G  *  M  V  I  N  L  *  D  Q  P  L  K  R  L  Q  I  *  L  W  R  D  G  K  L  F  L  R  R  T  T  I  S  *  Q  P  S  *  I  T  I  L  T  *  E   : G  V  C  L  E  I  M  P  L  E  L  *  I  *  R  W  L  K  S  L  E  R  *  V  L  L  P  S  S  Q  E  V  V  G  L  W  L  C  T  V  R  M  E  L  H  K  *  S  S  W  R  T  H  A  T  K  L  V  S  L  F  N  Q  L  K  L  C  L  R  F  *  T  K  L  I  F  K  L  *  N  Q  S  E  N  D  D  L  L  S  N  M  S  R  V  L  F  I  L  Y  F  F  H  L  S  L  A  Y  A  K  R  F  S  P  S  M  *  R  P  L  K  E  M  L  V  *  I  V  L  V  T  :  T  K  *  N   </first_frame>
            <second_frame>  R  N  S  S  *  R  L  D  L  *  I  P  I  S  A  V  T  P  T  I  S  N  N  G  G  S  D  R  A  Q  V  L  R  *  S  W  T  A  W  K  P  *  R  C  L  F  W  E  H  Y  I  L  Q  P  R  E  F  L  G  F  C  S  F  G  T  F  Y  R  S  R  H  C  S  S  S  F  S  R  S  R  P  I  Q  F  N  F  S  P   : G  E  Q  V  A  E  *  G  V  L  W  R  G  S  F  T  Y  G  N  R  *  N  I  S  Q  L  L  Q  R  E  Q  H  H  L  T  *  W  E  F  H  S  L  V  *  H  *  H  S  P  P   : D  R  A  F  R  F  *  C  N  R  K  C  C  T  E  L  P  S  *  F  L  Q  S  Q  T  S  H  Q  S  *  G  K  A  E  P  C  P  *  C  R  E  G  T  W  N  C  C  R  S  S  R  *  S  G  P  G  V  W  R  R  C  I  Y   : G  L  *  Q  E  S  H  G  *  I  R  S  W  H  I  Y  T  H  G  C  *  S  S  P  T  S  L  S  D  L  C  R  K  S  Q  *  F  W  K   : G  T  *  Y  S  S  T  K  M  V  R  W  *  *  I  Y  K  I  N  H  *  R  G  C  K  Y  S  C  G  G  T  E  S  S  S  *  E  G  L  Q  *  V  S  S  P  H  E  S  Q  F  *  L  E  K  :  A  Y  V  W  R  *  C  P  W  S  Y  E  Y  R  D  G  *  N  R  S  K  G  R  C  C  F  Q  V  H  R  K  W  W  G  C  G  C  V  L  S  G  W  N  F  T  S  E  A  A  G  G  R  M  P  Q  S  W  F  H  F  S  T  N  *  S  Y  A  F  V  S  K  R  N  *  S  S  N  S  E  I  K  V  K  M  M  I  C  F  Q  I  C  R  E  S  S  L  F  F  I  S  F  T  F  H  W  H  M  L  S  A  F  H  Q  V  C  S  D  H  *  K  K  C  *  Y  R  *  F  *  L  Q :   Q  N  R  T  </second_frame>
            <third_frame>   V  T  V  A  N  D  *  I  Y  R  F  Q  F  L  Q  *  H  L  Q  *  A  T  M  A  A  V  I  E  H  K  S  Y  A  R  V  G  L  L  G  N  P  S  D  V  Y  F  G  N  T  I  S  F  S  L  G  N  F  W  A  S  V  R  L  E  P  S  I  D  L  V  I  V  P  H  P  S  H  D  L  V  Q  F  N  S  I  S  H  L  :  V  N  R  L  Q  N  E  G  Y  Y  G  G  V  R  L  L  M  A  I  V  K  I  F  H  N  Y  C  K  E  S  N  I  T  L  H  D  G  N  F  T  L  S  Y  D  T  N  I  P  R  Q  :  T  G  L  S  G  S  S  A  I  V  S  A  A  L  S  C  L  L  D  F  Y  K  V  R  H  L  I  K  V  E  V  R  P  N  L  V  L  N  A  E  K  E  L  G  I  V  A  G  L  Q  D  R  V  A  Q  V  Y  G  G  V  V  Y  M  :  D  F  D  K  N  H  M  D  E  L  G  H  G  I  Y  T  P  M  D  V  D  L  L  P  P  L  Y  L  I  Y  A  E  N  P  S  D  S  G  K  :  V  H  S  T  V  R  Q  R  W  L  D  G  D  K  F  I  R  S  T  I  E  E  V  A  N  I  A  V  E  G  R  K  A  L  L  E  K  D  Y  N  K  L  A  A  L  M  N  H  N  F  D  L  R  R :   R  M  F  G  D  N  A  L  G  A  M  N  I  E  M  V  E  I  A  R  K  V  G  A  A  S  K  F  T  G  S  G  G  A  V  V  V  Y  C  P  D  G  T  S  Q  V  K  Q  L  E  D  A  C  H  K  A  G  F  T  F  Q  P  I  K  V  M  P  S  F  L  N  E  T  D  L  Q  T  L  K  S  K  *  K  *  *  S  A  F  K  Y  V  E  S  P  L  Y  S  L  F  L  S  P  F  I  G  I  C  *  A  L  F  T  K  Y  V  A  T  I  E  R  N  A  S  I  D  S  F  S  Y   : N  K  I  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3663" stop="3460"/>
                    <exon start="3193" stop="3044"/>
                    <exon start="2559" stop="2371"/>
                    <exon start="2276" stop="2160"/>
                    <exon start="1775" stop="1615"/>
                    <exon start="878" stop="632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATMAAVIEHKSYARVGLLGNPSDVYFGNTISFSLGNFWASVRLEPSIDLVIVPHPSHDLVQFNSISHLVNRLQNEGYYGGVRLLMAIVKIFHNYCKESNITLHDGNFTLSYDTNIPRQTGLSGSSAIVSAALSCLLDFYKVRHLIKVEVRPNLVLNAEKELGIVAGLQDRVAQVYGGVVYMDFDKNHMDELGHGIYTPMDVDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDKFIRSTIEEVANIAVEGRKALLEKDYNKLAALMNHNFDLRRRMFGDNALGAMNIEMVEIARKVGAASKFTGSGGAVVVYCPDGTSQVKQLEDACHKAGFTFQPIKVMPSFLNETDLQTLKSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="3748" e_stop="3460"/>
            <exon e_start="3248" e_stop="3044"/>
            <exon e_start="2559" e_stop="2371"/>
            <exon e_start="2276" e_stop="2160"/>
            <exon e_start="1775" e_stop="1615"/>
            <exon e_start="878" e_stop="354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.976" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.668" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.752" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="3748" e_stop="3460" e_length="289"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3459" i_stop="3249" i_length="211"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3248" e_stop="3044" e_length="205"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.871">
            <gDNA_intron_boundary i_start="3043" i_stop="2560" i_length="484"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2559" e_stop="2371" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="0.668" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2276" e_stop="2160" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.752" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2159" i_stop="1776" i_length="384"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1775" e_stop="1615" e_length="161"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="878" e_stop="354" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3748" stop="3460"/>
              <exon start="3248" stop="3044"/>
              <exon start="2559" stop="2516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3708" stop="3460"/>
              <exon start="3248" stop="3044"/>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3180" stop="3044"/>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2538" stop="2371"/>
              <exon start="2276" stop="2160"/>
              <exon start="1775" stop="1615"/>
              <exon start="878" stop="821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2506" stop="2371"/>
              <exon start="2276" stop="2160"/>
              <exon start="1775" stop="1714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1751" stop="1615"/>
              <exon start="878" stop="497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1751" stop="1615"/>
              <exon start="878" stop="519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1640" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1638" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377851" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1638" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378127" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1637" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238253" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="804" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235301" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCGCTGTAGATTCCAATATCTGCCGTAACAGTAGCTAACGATTAGATCTATAGATTCCAATTTCTGCAGTAACACCTACAATAAGCAACAATGGCGGCAGTGATCGAGCACAAGTCTTACGCTAGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG : TTCTATGTGGATTCTCTTGCAGGTTGATTGAATTTGACTTAACACTTGGCTGTAGGTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAG : ACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG : GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAG : GTACATAGTACAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAG : GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</gDNA_template>
            <first_frame> T  A  V  D  S  N  I  C  R  N  S  S  *  R  L  D  L  *  I  P  I  S  A  V  T  P  T  I  S  N  N  G  G  S  D  R  A  Q  V  L  R  *  S  W  T  A  W  K  P  *  R  C  L  F  W  E  H  Y  I  L  Q  P  R  E  F  L  G  F  C  S  F  G  T  F  Y  R  S  R  H  C  S  S  S  F  S  R  S  R  P  I  Q  F  N  F  S  P   : V  L  C  G  F  S  C  R  L  I  E  F  D  L  T  L  G  C  R  *  T  G  C  R  M  R  G  T  M  E  G  F  V  Y  L  W  Q  S  L  K  Y  F  T  T  I  A  K  R  A  T  S  P  Y  M  M  G  I  S  L  S  R  M  T  L  T  F  P  A  R :   Q  G  F  Q  V  L  V  Q  S  *  V  L  H  *  V  A  F  L  I  F  T  K  S  D  I  S  S  K  L  R  *  G  R  T  L  S  L  M  Q  R  R  N  L  E  L  L  Q  V  F  K  I  E  W  P  R  C  M  E  A  L  Y  I  W :   T  L  T  R  I  T  W  M  N  *  V  M  A  Y  I  H  P  W  M  L  I  F  S  H  L  F  I  *  S  M  Q  K  I  P  V  I  L  E  R :   Y  I  V  Q  F  D  K  D  G  *  M  V  I  N  L  *  D  Q  P  L  K  R  L  Q  I  *  L  W  R  D  G  K  L  F  L  R  R  T  T  I  S  *  Q  P  S  *  I  T  I  L  T  *  E   : G  V  C  L  E  I  M  P  L  E  L  *  I  *  R  W  L  K  S  L  E  R  *  V  L  L  P  S  S  Q  E  V  V  G  L  W  L  C  T  V  R  M  E  L  H  K  *  S  S  W  R  T  H  A  T  K  L  V  S  L  F  N  Q  L  K  L  C  L  R  F  *  T  K  L  I  F  K  L  *  N  Q  S  E  N  D  D  L  L  S  N  M  S  R  V  L  F  I  L  Y  F  F  H  L  S  L  A  Y  A  K  R  F  S  P  S  M  *  R  P  L  K  E  M  L  V  *  I  V  L  V  T  I  V  L  L  L  L  *  C  I  S  R  S  A  Y  F  T  V  L  A  *  T  V  I  R  F  T  Y  F  N  S  N  C  V  M  P  I  I  I  T  T  K  S  V  T  S  </first_frame>
            <second_frame>  P  L  *  I  P  I  S  A  V  T  V  A  N  D  *  I  Y  R  F  Q  F  L  Q  *  H  L  Q  *  A  T  M  A  A  V  I  E  H  K  S  Y  A  R  V  G  L  L  G  N  P  S  D  V  Y  F  G  N  T  I  S  F  S  L  G  N  F  W  A  S  V  R  L  E  P  S  I  D  L  V  I  V  P  H  P  S  H  D  L  V  Q  F  N  S  I  S  H  L  :  F  Y  V  D  S  L  A  G  *  L  N  L  T  *  H  L  A  V  G  E  Q  V  A  E  *  G  V  L  W  R  G  S  F  T  Y  G  N  R  *  N  I  S  Q  L  L  Q  R  E  Q  H  H  L  T  *  W  E  F  H  S  L  V  *  H  *  H  S  P  P   : D  R  A  F  R  F  *  C  N  R  K  C  C  T  E  L  P  S  *  F  L  Q  S  Q  T  S  H  Q  S  *  G  K  A  E  P  C  P  *  C  R  E  G  T  W  N  C  C  R  S  S  R  *  S  G  P  G  V  W  R  R  C  I  Y   : G  L  *  Q  E  S  H  G  *  I  R  S  W  H  I  Y  T  H  G  C  *  S  S  P  T  S  L  S  D  L  C  R  K  S  Q  *  F  W  K   : G  T  *  Y  S  S  T  K  M  V  R  W  *  *  I  Y  K  I  N  H  *  R  G  C  K  Y  S  C  G  G  T  E  S  S  S  *  E  G  L  Q  *  V  S  S  P  H  E  S  Q  F  *  L  E  K  :  A  Y  V  W  R  *  C  P  W  S  Y  E  Y  R  D  G  *  N  R  S  K  G  R  C  C  F  Q  V  H  R  K  W  W  G  C  G  C  V  L  S  G  W  N  F  T  S  E  A  A  G  G  R  M  P  Q  S  W  F  H  F  S  T  N  *  S  Y  A  F  V  S  K  R  N  *  S  S  N  S  E  I  K  V  K  M  M  I  C  F  Q  I  C  R  E  S  S  L  F  F  I  S  F  T  F  H  W  H  M  L  S  A  F  H  Q  V  C  S  D  H  *  K  K  C  *  Y  R  *  F  *  L  Q  L  F  C  C  Y  C  N  A  F  R  E  A  L  T  L  Q  F  *  R  K  P  S  L  D  S  H  I  L  T  P  I  V  *  C  Q  L  *  L  L  L  N  L  L  L  L </second_frame>
            <third_frame>   R  C  R  F  Q  Y  L  P  *  Q  *  L  T  I  R  S  I  D  S  N  F  C  S  N  T  Y  N  K  Q  Q  W  R  Q  *  S  S  T  S  L  T  L  E  L  D  C  L  E  T  L  A  M  F  I  L  G  T  L  Y  P  S  A  S  G  I  F  G  L  L  F  V  W  N  L  L  *  I  S  S  L  F  L  I  L  L  T  I  S  S  N  S  I  Q  F  L  T  C :   S  M  W  I  L  L  Q  V  D  *  I  *  L  N  T  W  L  *  V  N  R  L  Q  N  E  G  Y  Y  G  G  V  R  L  L  M  A  I  V  K  I  F  H  N  Y  C  K  E  S  N  I  T  L  H  D  G  N  F  T  L  S  Y  D  T  N  I  P  R  Q  :  T  G  L  S  G  S  S  A  I  V  S  A  A  L  S  C  L  L  D  F  Y  K  V  R  H  L  I  K  V  E  V  R  P  N  L  V  L  N  A  E  K  E  L  G  I  V  A  G  L  Q  D  R  V  A  Q  V  Y  G  G  V  V  Y  M  :  D  F  D  K  N  H  M  D  E  L  G  H  G  I  Y  T  P  M  D  V  D  L  L  P  P  L  Y  L  I  Y  A  E  N  P  S  D  S  G  K  :  V  H  S  T  V  R  Q  R  W  L  D  G  D  K  F  I  R  S  T  I  E  E  V  A  N  I  A  V  E  G  R  K  A  L  L  E  K  D  Y  N  K  L  A  A  L  M  N  H  N  F  D  L  R  R :   R  M  F  G  D  N  A  L  G  A  M  N  I  E  M  V  E  I  A  R  K  V  G  A  A  S  K  F  T  G  S  G  G  A  V  V  V  Y  C  P  D  G  T  S  Q  V  K  Q  L  E  D  A  C  H  K  A  G  F  T  F  Q  P  I  K  V  M  P  S  F  L  N  E  T  D  L  Q  T  L  K  S  K  *  K  *  *  S  A  F  K  Y  V  E  S  P  L  Y  S  L  F  L  S  P  F  I  G  I  C  *  A  L  F  T  K  Y  V  A  T  I  E  R  N  A  S  I  D  S  F  S  Y  N  C  F  A  A  I  V  M  H  F  E  K  R  L  L  Y  S  F  S  V  N  R  H  *  I  H  I  F  *  L  Q  L  C  D  A  N  Y  N  Y  Y  *  I  C  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3193" stop="3044"/>
                    <exon start="2559" stop="2371"/>
                    <exon start="2276" stop="2160"/>
                    <exon start="1775" stop="1615"/>
                    <exon start="878" stop="632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNRLQNEGYYGGVRLLMAIVKIFHNYCKESNITLHDGNFTLSYDTNIPRQTGLSGSSAIVSAALSCLLDFYKVRHLIKVEVRPNLVLNAEKELGIVAGLQDRVAQVYGGVVYMDFDKNHMDELGHGIYTPMDVDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDKFIRSTIEEVANIAVEGRKALLEKDYNKLAALMNHNFDLRRRMFGDNALGAMNIEMVEIARKVGAASKFTGSGGAVVVYCPDGTSQVKQLEDACHKAGFTFQPIKVMPSFLNETDLQTLKSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3663" stop="3460"/>
                    <exon start="3248" stop="3222"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATMAAVIEHKSYARVGLLGNPSDVYFGNTISFSLGNFWASVRLEPSIDLVIVPHPSHDLVQFNSISHLFYVDSLAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="2562" e_stop="2371"/>
            <exon e_start="2276" e_stop="2160"/>
            <exon e_start="1775" e_stop="1615"/>
            <exon e_start="878" e_stop="354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.668" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.752" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2562" e_stop="2371" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.668" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2276" e_stop="2160" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.752" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2159" i_stop="1776" i_length="384"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1775" e_stop="1615" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="878" e_stop="354" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2562" stop="2371"/>
              <exon start="2276" stop="2176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2538" stop="2371"/>
              <exon start="2276" stop="2160"/>
              <exon start="1775" stop="1615"/>
              <exon start="878" stop="821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2506" stop="2371"/>
              <exon start="2276" stop="2160"/>
              <exon start="1775" stop="1714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1751" stop="1615"/>
              <exon start="878" stop="497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1751" stop="1615"/>
              <exon start="878" stop="519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1640" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1638" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377851" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1638" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378127" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1637" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238253" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="804" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235301" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG : GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAG : GTACATAGTACAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAG : GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</gDNA_template>
            <first_frame> Q  T  G  L  S  G  S  S  A  I  V  S  A  A  L  S  C  L  L  D  F  Y  K  V  R  H  L  I  K  V  E  V  R  P  N  L  V  L  N  A  E  K  E  L  G  I  V  A  G  L  Q  D  R  V  A  Q  V  Y  G  G  V  V  Y  M  :  D  F  D  K  N  H  M  D  E  L  G  H  G  I  Y  T  P  M  D  V  D  L  L  P  P  L  Y  L  I  Y  A  E  N  P  S  D  S  G  K  :  V  H  S  T  V  R  Q  R  W  L  D  G  D  K  F  I  R  S  T  I  E  E  V  A  N  I  A  V  E  G  R  K  A  L  L  E  K  D  Y  N  K  L  A  A  L  M  N  H  N  F  D  L  R  R :   R  M  F  G  D  N  A  L  G  A  M  N  I  E  M  V  E  I  A  R  K  V  G  A  A  S  K  F  T  G  S  G  G  A  V  V  V  Y  C  P  D  G  T  S  Q  V  K  Q  L  E  D  A  C  H  K  A  G  F  T  F  Q  P  I  K  V  M  P  S  F  L  N  E  T  D  L  Q  T  L  K  S  K  *  K  *  *  S  A  F  K  Y  V  E  S  P  L  Y  S  L  F  L  S  P  F  I  G  I  C  *  A  L  F  T  K  Y  V  A  T  I  E  R  N  A  S  I  D  S  F  S  Y  N  C  F  A  A  I  V  M  H  F  E  K  R  L  L  Y  S  F  S  V  N  R  H  *  I  H  I  F  *  L  Q  L  C  D  A  N  Y  N  Y  Y  *  I  C  Y  F   </first_frame>
            <second_frame>  R  Q  G  F  Q  V  L  V  Q  S  *  V  L  H  *  V  A  F  L  I  F  T  K  S  D  I  S  S  K  L  R  *  G  R  T  L  S  L  M  Q  R  R  N  L  E  L  L  Q  V  F  K  I  E  W  P  R  C  M  E  A  L  Y  I  W :   T  L  T  R  I  T  W  M  N  *  V  M  A  Y  I  H  P  W  M  L  I  F  S  H  L  F  I  *  S  M  Q  K  I  P  V  I  L  E  R :   Y  I  V  Q  F  D  K  D  G  *  M  V  I  N  L  *  D  Q  P  L  K  R  L  Q  I  *  L  W  R  D  G  K  L  F  L  R  R  T  T  I  S  *  Q  P  S  *  I  T  I  L  T  *  E   : G  V  C  L  E  I  M  P  L  E  L  *  I  *  R  W  L  K  S  L  E  R  *  V  L  L  P  S  S  Q  E  V  V  G  L  W  L  C  T  V  R  M  E  L  H  K  *  S  S  W  R  T  H  A  T  K  L  V  S  L  F  N  Q  L  K  L  C  L  R  F  *  T  K  L  I  F  K  L  *  N  Q  S  E  N  D  D  L  L  S  N  M  S  R  V  L  F  I  L  Y  F  F  H  L  S  L  A  Y  A  K  R  F  S  P  S  M  *  R  P  L  K  E  M  L  V  *  I  V  L  V  T  I  V  L  L  L  L  *  C  I  S  R  S  A  Y  F  T  V  L  A  *  T  V  I  R  F  T  Y  F  N  S  N  C  V  M  P  I  I  I  T  T  K  S  V  T  S  </second_frame>
            <third_frame>   D  R  A  F  R  F  *  C  N  R  K  C  C  T  E  L  P  S  *  F  L  Q  S  Q  T  S  H  Q  S  *  G  K  A  E  P  C  P  *  C  R  E  G  T  W  N  C  C  R  S  S  R  *  S  G  P  G  V  W  R  R  C  I  Y   : G  L  *  Q  E  S  H  G  *  I  R  S  W  H  I  Y  T  H  G  C  *  S  S  P  T  S  L  S  D  L  C  R  K  S  Q  *  F  W  K   : G  T  *  Y  S  S  T  K  M  V  R  W  *  *  I  Y  K  I  N  H  *  R  G  C  K  Y  S  C  G  G  T  E  S  S  S  *  E  G  L  Q  *  V  S  S  P  H  E  S  Q  F  *  L  E  K  :  A  Y  V  W  R  *  C  P  W  S  Y  E  Y  R  D  G  *  N  R  S  K  G  R  C  C  F  Q  V  H  R  K  W  W  G  C  G  C  V  L  S  G  W  N  F  T  S  E  A  A  G  G  R  M  P  Q  S  W  F  H  F  S  T  N  *  S  Y  A  F  V  S  K  R  N  *  S  S  N  S  E  I  K  V  K  M  M  I  C  F  Q  I  C  R  E  S  S  L  F  F  I  S  F  T  F  H  W  H  M  L  S  A  F  H  Q  V  C  S  D  H  *  K  K  C  *  Y  R  *  F  *  L  Q  L  F  C  C  Y  C  N  A  F  R  E  A  L  T  L  Q  F  *  R  K  P  S  L  D  S  H  I  L  T  P  I  V  *  C  Q  L  *  L  L  L  N  L  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2562" stop="2371"/>
                    <exon start="2276" stop="2160"/>
                    <exon start="1775" stop="1615"/>
                    <exon start="878" stop="632"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTGLSGSSAIVSAALSCLLDFYKVRHLIKVEVRPNLVLNAEKELGIVAGLQDRVAQVYGGVVYMDFDKNHMDELGHGIYTPMDVDLLPPLYLIYAENPSDSGKVHSTVRQRWLDGDKFIRSTIEEVANIAVEGRKALLEKDYNKLAALMNHNFDLRRRMFGDNALGAMNIEMVEIARKVGAASKFTGSGGAVVVYCPDGTSQVKQLEDACHKAGFTFQPIKVMPSFLNETDLQTLKSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="1800" e_stop="1615"/>
            <exon e_start="878" e_stop="354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="1800" e_stop="1615" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1614" i_stop="879" i_length="736"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="878" e_stop="354" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1800" stop="1615"/>
              <exon start="878" stop="789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1751" stop="1615"/>
              <exon start="878" stop="497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1751" stop="1615"/>
              <exon start="878" stop="519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1640" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377850" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1638" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377851" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1638" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378127" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1637" stop="1615"/>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378126" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="878" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238253" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="804" stop="354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235301" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATACTTTTTTTTCAAATGCAGGTACATAGTACAGTTCGACAAAGATGGTTAGATGGTGATAAATTTATAAGATCAACCATTGAAGAGGTTGCAAATATAGCTGTGGAGGGACGGAAAGCTCTTCTTGAGAAGGACTACAATAAGTTAGCAGCCCTCATGAATCACAATTTTGACTTGAGAAG : GCGTATGTTTGGAGATAATGCCCTTGGAGCTATGAATATAGAGATGGTTGAAATCGCTCGAAAGGTAGGTGCTGCTTCCAAGTTCACAGGAAGTGGTGGGGCTGTGGTTGTGTACTGTCCGGATGGAACTTCACAAGTGAAGCAGCTGGAGGACGCATGCCACAAAGCTGGTTTCACTTTTCAACCAATTAAAGTTATGCCTTCGTTTCTAAACGAAACTGATCTTCAAACTCTGAAATCAAAGTGAAAATGATGATCTGCTTTCAAATATGTCGAGAGTCCTCTTTATTCTTTATTTCTTTCACCTTTCATTGGCATATGCTAAGCGCTTTTCACCAAGTATGTAGCGACCATTGAAAGAAATGCTAGTATAGATAGTTTTAGTTACAATTGTTTTGCTGCTATTGTAATGCATTTCGAGAAGCGCTTACTTTACAGTTTTAGCGTAAACCGTCATTAGATTCACATATTTTAACTCCAATTGTGTGATGCCAATTATAATTACTACTAAATCTGTTACTTCTA</gDNA_template>
            <first_frame> D  D  T  F  F  S  N  A  G  T  *  Y  S  S  T  K  M  V  R  W  *  *  I  Y  K  I  N  H  *  R  G  C  K  Y  S  C  G  G  T  E  S  S  S  *  E  G  L  Q  *  V  S  S  P  H  E  S  Q  F  *  L  E  K  :  A  Y  V  W  R  *  C  P  W  S  Y  E  Y  R  D  G  *  N  R  S  K  G  R  C  C  F  Q  V  H  R  K  W  W  G  C  G  C  V  L  S  G  W  N  F  T  S  E  A  A  G  G  R  M  P  Q  S  W  F  H  F  S  T  N  *  S  Y  A  F  V  S  K  R  N  *  S  S  N  S  E  I  K  V  K  M  M  I  C  F  Q  I  C  R  E  S  S  L  F  F  I  S  F  T  F  H  W  H  M  L  S  A  F  H  Q  V  C  S  D  H  *  K  K  C  *  Y  R  *  F  *  L  Q  L  F  C  C  Y  C  N  A  F  R  E  A  L  T  L  Q  F  *  R  K  P  S  L  D  S  H  I  L  T  P  I  V  *  C  Q  L  *  L  L  L  N  L  L  L  L </first_frame>
            <second_frame>  M  I  L  F  F  Q  M  Q  V  H  S  T  V  R  Q  R  W  L  D  G  D  K  F  I  R  S  T  I  E  E  V  A  N  I  A  V  E  G  R  K  A  L  L  E  K  D  Y  N  K  L  A  A  L  M  N  H  N  F  D  L  R  R :   R  M  F  G  D  N  A  L  G  A  M  N  I  E  M  V  E  I  A  R  K  V  G  A  A  S  K  F  T  G  S  G  G  A  V  V  V  Y  C  P  D  G  T  S  Q  V  K  Q  L  E  D  A  C  H  K  A  G  F  T  F  Q  P  I  K  V  M  P  S  F  L  N  E  T  D  L  Q  T  L  K  S  K  *  K  *  *  S  A  F  K  Y  V  E  S  P  L  Y  S  L  F  L  S  P  F  I  G  I  C  *  A  L  F  T  K  Y  V  A  T  I  E  R  N  A  S  I  D  S  F  S  Y  N  C  F  A  A  I  V  M  H  F  E  K  R  L  L  Y  S  F  S  V  N  R  H  *  I  H  I  F  *  L  Q  L  C  D  A  N  Y  N  Y  Y  *  I  C  Y  F   </second_frame>
            <third_frame>   *  Y  F  F  F  K  C  R  Y  I  V  Q  F  D  K  D  G  *  M  V  I  N  L  *  D  Q  P  L  K  R  L  Q  I  *  L  W  R  D  G  K  L  F  L  R  R  T  T  I  S  *  Q  P  S  *  I  T  I  L  T  *  E   : G  V  C  L  E  I  M  P  L  E  L  *  I  *  R  W  L  K  S  L  E  R  *  V  L  L  P  S  S  Q  E  V  V  G  L  W  L  C  T  V  R  M  E  L  H  K  *  S  S  W  R  T  H  A  T  K  L  V  S  L  F  N  Q  L  K  L  C  L  R  F  *  T  K  L  I  F  K  L  *  N  Q  S  E  N  D  D  L  L  S  N  M  S  R  V  L  F  I  L  Y  F  F  H  L  S  L  A  Y  A  K  R  F  S  P  S  M  *  R  P  L  K  E  M  L  V  *  I  V  L  V  T  I  V  L  L  L  L  *  C  I  S  R  S  A  Y  F  T  V  L  A  *  T  V  I  R  F  T  Y  F  N  S  N  C  V  M  P  I  I  I  T  T  K  S  V  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1799" stop="1615"/>
                    <exon start="878" stop="632"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MILFFQMQVHSTVRQRWLDGDKFIRSTIEEVANIAVEGRKALLEKDYNKLAALMNHNFDLRRRMFGDNALGAMNIEMVEIARKVGAASKFTGSGGAVVVYCPDGTSQVKQLEDACHKAGFTFQPIKVMPSFLNETDLQTLKSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="2562" e_stop="2371"/>
            <exon e_start="2276" e_stop="2049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.668" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2562" e_stop="2371" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.668" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2370" i_stop="2277" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2276" e_stop="2049" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2562" stop="2371"/>
              <exon start="2276" stop="2176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2560" stop="2371"/>
              <exon start="2276" stop="2049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2560" stop="2371"/>
              <exon start="2276" stop="2125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2559" stop="2371"/>
              <exon start="2276" stop="2230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACAGGGCTTTCAGGTTCTAGTGCAATCGTAAGTGCTGCACTGAGTTGCCTTCTTGATTTTTACAAAGTCAGACATCTCATCAAAGTTGAGGTAAGGCCGAACCTTGTCCTTAATGCAGAGAAGGAACTTGGAATTGTTGCAGGTCTTCAAGATAGAGTGGCCCAGGTGTATGGAGGCGTTGTATATATG : GACTTTGACAAGAATCACATGGATGAATTAGGTCATGGCATATATACACCCATGGATGTTGATCTTCTCCCACCTCTTTATCTGATCTATGCAGAAAATCCCAGTGATTCTGGAAAGGTTTGAACTTAATGTGCAGAATATGAGTGAAAAATCTCTGTTGTCTGGCCAAAGATTCTATAGATGAGTGTTATTTGCTTAGCCATGCAATGGGTTAGAATATTACATTTT</gDNA_template>
            <first_frame> Q  T  G  L  S  G  S  S  A  I  V  S  A  A  L  S  C  L  L  D  F  Y  K  V  R  H  L  I  K  V  E  V  R  P  N  L  V  L  N  A  E  K  E  L  G  I  V  A  G  L  Q  D  R  V  A  Q  V  Y  G  G  V  V  Y  M  :  D  F  D  K  N  H  M  D  E  L  G  H  G  I  Y  T  P  M  D  V  D  L  L  P  P  L  Y  L  I  Y  A  E  N  P  S  D  S  G  K  V  *  T  *  C  A  E  Y  E  *  K  I  S  V  V  W  P  K  I  L  *  M  S  V  I  C  L  A  M  Q  W  V  R  I  L  H  F </first_frame>
            <second_frame>  R  Q  G  F  Q  V  L  V  Q  S  *  V  L  H  *  V  A  F  L  I  F  T  K  S  D  I  S  S  K  L  R  *  G  R  T  L  S  L  M  Q  R  R  N  L  E  L  L  Q  V  F  K  I  E  W  P  R  C  M  E  A  L  Y  I  W :   T  L  T  R  I  T  W  M  N  *  V  M  A  Y  I  H  P  W  M  L  I  F  S  H  L  F  I  *  S  M  Q  K  I  P  V  I  L  E  R  F  E  L  N  V  Q  N  M  S  E  K  S  L  L  S  G  Q  R  F  Y  R  *  V  L  F  A  *  P  C  N  G  L  E  Y  Y  I   </second_frame>
            <third_frame>   D  R  A  F  R  F  *  C  N  R  K  C  C  T  E  L  P  S  *  F  L  Q  S  Q  T  S  H  Q  S  *  G  K  A  E  P  C  P  *  C  R  E  G  T  W  N  C  C  R  S  S  R  *  S  G  P  G  V  W  R  R  C  I  Y   : G  L  *  Q  E  S  H  G  *  I  R  S  W  H  I  Y  T  H  G  C  *  S  S  P  T  S  L  S  D  L  C  R  K  S  Q  *  F  W  K  G  L  N  L  M  C  R  I  *  V  K  N  L  C  C  L  A  K  D  S  I  D  E  C  Y  L  L  S  H  A  M  G  *  N  I  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2562" stop="2371"/>
                    <exon start="2276" stop="2154"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTGLSGSSAIVSAALSCLLDFYKVRHLIKVEVRPNLVLNAEKELGIVAGLQDRVAQVYGGVVYMDFDKNHMDELGHGIYTPMDVDLLPPLYLIYAENPSDSGKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="3624" e_stop="3460"/>
            <exon e_start="3193" e_stop="2807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3624" e_stop="3460" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="3459" i_stop="3194" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="3193" e_stop="2807" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3624" stop="3460"/>
              <exon start="3193" stop="2807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTTGGACTGCTTGGAAACCCTAGCGATGTTTATTTTGGGAACACTATATCCTTCAGCCTCGGGAATTTTTGGGCTTCTGTTCGTTTGGAACCTTCTATAGATCTCGTCATTGTTCCTCATCCTTCTCACGATCTCGTCCAATTCAATTCAATTTCTCACCTG : GTGAACAGGTTGCAGAATGAGGGGTACTATGGAGGGGTTCGTTTACTTATGGCAATCGTTAAAATATTTCACAACTATTGCAAAGAGAGCAACATCACCTTACATGATGGGAATTTCACTCTCTCGTATGACACTAACATTCCCCGCCAGGTAGAACCTAACATTGCAAGATTTATCTGCCCTTCGATAGATAAGTTATGTGGATTGGAATCACGTTAGCTAATTGTTGTTAAACTCTTACTAAACGTTCTTTGACTTGAAACTGCTCAAATATAGAGTGAGCTTCTGTTTATATGGTCCTATTGTTTGGTTTTGGAAATGTCTTTTCGTAGGTTTACAATTTATCTAAAATGTCTTAGTCGAGTAAAATAATTCTTTAATTTCAAC</gDNA_template>
            <first_frame> R  V  G  L  L  G  N  P  S  D  V  Y  F  G  N  T  I  S  F  S  L  G  N  F  W  A  S  V  R  L  E  P  S  I  D  L  V  I  V  P  H  P  S  H  D  L  V  Q  F  N  S  I  S  H  L  :  V  N  R  L  Q  N  E  G  Y  Y  G  G  V  R  L  L  M  A  I  V  K  I  F  H  N  Y  C  K  E  S  N  I  T  L  H  D  G  N  F  T  L  S  Y  D  T  N  I  P  R  Q  V  E  P  N  I  A  R  F  I  C  P  S  I  D  K  L  C  G  L  E  S  R  *  L  I  V  V  K  L  L  L  N  V  L  *  L  E  T  A  Q  I  *  S  E  L  L  F  I  W  S  Y  C  L  V  L  E  M  S  F  R  R  F  T  I  Y  L  K  C  L  S  R  V  K  *  F  F  N  F  N </first_frame>
            <second_frame>  E  L  D  C  L  E  T  L  A  M  F  I  L  G  T  L  Y  P  S  A  S  G  I  F  G  L  L  F  V  W  N  L  L  *  I  S  S  L  F  L  I  L  L  T  I  S  S  N  S  I  Q  F  L  T  W :   *  T  G  C  R  M  R  G  T  M  E  G  F  V  Y  L  W  Q  S  L  K  Y  F  T  T  I  A  K  R  A  T  S  P  Y  M  M  G  I  S  L  S  R  M  T  L  T  F  P  A  R  *  N  L  T  L  Q  D  L  S  A  L  R  *  I  S  Y  V  D  W  N  H  V  S  *  L  L  L  N  S  Y  *  T  F  F  D  L  K  L  L  K  Y  R  V  S  F  C  L  Y  G  P  I  V  W  F  W  K  C  L  F  V  G  L  Q  F  I  *  N  V  L  V  E  *  N  N  S  L  I  S   </second_frame>
            <third_frame>   S  W  T  A  W  K  P  *  R  C  L  F  W  E  H  Y  I  L  Q  P  R  E  F  L  G  F  C  S  F  G  T  F  Y  R  S  R  H  C  S  S  S  F  S  R  S  R  P  I  Q  F  N  F  S  P   : G  E  Q  V  A  E  *  G  V  L  W  R  G  S  F  T  Y  G  N  R  *  N  I  S  Q  L  L  Q  R  E  Q  H  H  L  T  *  W  E  F  H  S  L  V  *  H  *  H  S  P  P  G  R  T  *  H  C  K  I  Y  L  P  F  D  R  *  V  M  W  I  G  I  T  L  A  N  C  C  *  T  L  T  K  R  S  L  T  *  N  C  S  N  I  E  *  A  S  V  Y  M  V  L  L  F  G  F  G  N  V  F  S  *  V  Y  N  L  S  K  M  S  *  S  S  K  I  I  L  *  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3624" stop="3460"/>
                    <exon start="3193" stop="2975"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVGLLGNPSDVYFGNTISFSLGNFWASVRLEPSIDLVIVPHPSHDLVQFNSISHLVNRLQNEGYYGGVRLLMAIVKIFHNYCKESNITLHDGNFTLSYDTNIPRQVEPNIARFICPSIDKLCGLESR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6982" PGL_stop="7463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6982" e_stop="7168"/>
            <exon e_start="7201" e_stop="7463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.947"/>
          <exon-only e_score="0.882"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="6982" e_stop="7168" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7169" i_stop="7200" i_length="32"/>
          </intron>
          <exon e_serial="2" e_score="0.882">
            <gDNA_exon_boundary e_start="7201" e_stop="7463" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6982" stop="7168"/>
              <exon start="7201" stop="7338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6982" stop="7134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6983" stop="7168"/>
              <exon start="7201" stop="7463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTGCGCTGCAATATTT : GAAGTAAAATGATTGTAAATTGTATTATTAAGTGTATAGCACGAAGATATATATTTTTGCATGTGAATATACAATTTTCTCTCGCTTTATACAAAATAGAAACTCAATTTATACACTTCTGTGTATAAAGCGAGAGAGGCGAACAGAGGGAGAGTGGCGATCGAGATTTTTGGAAGAGAGGCGACTGACAAACTTTGGCTAACGTTTGCTATGGAATACAATTAAATCAAATCGTAGCTACTCTATTTATTTTAGATTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  G  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  L  R  C  N  I   : *  S  K  M  I  V  N  C  I  I  K  C  I  A  R  R  Y  I  F  L  H  V  N  I  Q  F  S  L  A  L  Y  K  I  E  T  Q  F  I  H  F  C  V  *  S  E  R  G  E  Q  R  E  S  G  D  R  D  F  W  K  R  G  D  *  Q  T  L  A  N  V  C  Y  G  I  Q  L  N  Q  I  V  A  T  L  F  I  L  D  Y  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  E  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  C  A  A  I  F  :  E  V  K  *  L  *  I  V  L  L  S  V  *  H  E  D  I  Y  F  C  M  *  I  Y  N  F  L  S  L  Y  T  K  *  K  L  N  L  Y  T  S  V  Y  K  A  R  E  A  N  R  G  R  V  A  I  E  I  F  G  R  E  A  T  D  K  L  W  L  T  F  A  M  E  Y  N  *  I  K  S  *  L  L  Y  L  F  *  I  I   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  R  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  P  F  A  L  Q  Y  L :   K  *  N  D  C  K  L  Y  Y  *  V  Y  S  T  K  I  Y  I  F  A  C  E  Y  T  I  F  S  R  F  I  Q  N  R  N  S  I  Y  T  L  L  C  I  K  R  E  R  R  T  E  G  E  W  R  S  R  F  L  E  E  R  R  L  T  N  F  G  *  R  L  L  W  N  T  I  K  S  N  R  S  Y  S  I  Y  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0064B17.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="17328" PGL_stop="19266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17328" e_stop="17671"/>
            <exon e_start="18159" e_stop="19266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="0.860"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.860">
            <gDNA_exon_boundary e_start="17328" e_stop="17671" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="17672" i_stop="18158" i_length="487"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18159" e_stop="19266" e_length="1108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17328" stop="17671"/>
              <exon start="18159" stop="18614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18321" stop="18798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18605" stop="19266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18605" stop="19244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18605" stop="19230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18645" stop="19153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTGTTTTTATATAGTCAAATTCAATCCACTAAGAAAAAAAAATTGTAAAATAACTTCCCCTCTCATTGATAATGGCAATTCCATTGCTGTAAATTTGAGAGGGAAGGGGGTTTCTTTTTTCTTCAGACAATCTCTCTTTTCATAATTCGTTTATTTTCTGAATTTTACAGAAGGTAACAAAAAATCTTGAAAAAGAGAGGAAAAAAATTGGAAGAAGCCAAAGTTTCATTGGCCATTTTTAGAGAAGGGGTTTGAAGAAATTATCTTGGTAGTGCTCATGGTGCCTGATATTTATTACCCTTCAAAGAAAAGCGACGATTTTTGTGAAGACGTTTGTGGCGAG : CAGTCTACCCCTGGAATAGTAAGCATGTCAAGATTAAGGTGTATGCTTCGAGGATTGGATTTAAAGGCTATTGTCTTCTTGGTTGTTTTTGTGCCATTATGTATAGTTGGTATATACTTGCATGGACAGAAGATTACCTACTTCCTCCGACCAATATGGCAATCTCCTCCAAAGCCCTTTATTGAACTTACCCATTATTATCATGAGAATGTCTCCATGGAGAATCTTTGCAAGCAACATGGATGGGGAATTCGTGAATATCCTAGGCGTGTCTATGATGCTGTTTTGTTTAGTAATGAAGTGGACATGCTTACTATCAGATGGAAGGAATTGTATCCTTACATCACACAGTTTGTTCTGCTCGAGTCAAACTCCACGTTTACTGGATTACCAAAACCATTTACTTTTGCTATTAACCGGGACCAATTTAAGTTTGTTGAGCCTCGATTGACTTATGGAACCATTGGAGGAAGATTCAGGAAAGGTGAAAATCCGTTTGTTGAAGAGGCATATCAGAGAGTAGCACTCGACCAGCTTTTGAGAATAGCTGGAATAGAGGATGATGATTTGCTGATAATGTCCGATGTTGATGAAATTCCTAGCAGGCACACCATCGATCTTTTAAGATGGTGTGATGACATTCCTCCAATTCTTCACCTTCATTTTAGGAATTACTTGTACTCTTTTGAATTTGAGCTTAAGCACAGAAGTTGGAGAGCTTCAGTCCACAGGTATCAGAGTGGCAAGACTCGATACGTACACTATCGTCAGACTGATTACCTTTTGGCAGATTCAGGTTGGCATTGTAGCTTTTGCTTCCGCCACATCTCTGACTTCATATTCAAAATGAAAGCTTACAGCCACACTGATAGAGTGAGGTTCTTGCATTATTTGAACCCTAGAAGAATACAAGATATCATTTGTGAAGGATCTGATTTATATGACATGCTTCCTGAGGAGTACACATTCAAGGATATCATTGGTAACATGGGACCTCTACCTCATTCTTACTCAGCCGTGCATCTTCCTGCGCATTTGCTGGATAATCCCGAGAAGTATAAGTATCTCTTGCCTGGGAACTGCAAAAGAGAAAGTGGCTAAGTTGTTA</gDNA_template>
            <first_frame> R  V  F  I  *  S  N  S  I  H  *  E  K  K  I  V  K  *  L  P  L  S  L  I  M  A  I  P  L  L  *  I  *  E  G  R  G  F  L  F  S  S  D  N  L  S  F  H  N  S  F  I  F  *  I  L  Q  K  V  T  K  N  L  E  K  E  R  K  K  I  G  R  S  Q  S  F  I  G  H  F  *  R  R  G  L  K  K  L  S  W  *  C  S  W  C  L  I  F  I  T  L  Q  R  K  A  T  I  F  V  K  T  F  V  A  S :   S  L  P  L  E  *  *  A  C  Q  D  *  G  V  C  F  E  D  W  I  *  R  L  L  S  S  W  L  F  L  C  H  Y  V  *  L  V  Y  T  C  M  D  R  R  L  P  T  S  S  D  Q  Y  G  N  L  L  Q  S  P  L  L  N  L  P  I  I  I  M  R  M  S  P  W  R  I  F  A  S  N  M  D  G  E  F  V  N  I  L  G  V  S  M  M  L  F  C  L  V  M  K  W  T  C  L  L  S  D  G  R  N  C  I  L  T  S  H  S  L  F  C  S  S  Q  T  P  R  L  L  D  Y  Q  N  H  L  L  L  L  L  T  G  T  N  L  S  L  L  S  L  D  *  L  M  E  P  L  E  E  D  S  G  K  V  K  I  R  L  L  K  R  H  I  R  E  *  H  S  T  S  F  *  E  *  L  E  *  R  M  M  I  C  *  *  C  P  M  L  M  K  F  L  A  G  T  P  S  I  F  *  D  G  V  M  T  F  L  Q  F  F  T  F  I  L  G  I  T  C  T  L  L  N  L  S  L  S  T  E  V  G  E  L  Q  S  T  G  I  R  V  A  R  L  D  T  Y  T  I  V  R  L  I  T  F  W  Q  I  Q  V  G  I  V  A  F  A  S  A  T  S  L  T  S  Y  S  K  *  K  L  T  A  T  L  I  E  *  G  S  C  I  I  *  T  L  E  E  Y  K  I  S  F  V  K  D  L  I  Y  M  T  C  F  L  R  S  T  H  S  R  I  S  L  V  T  W  D  L  Y  L  I  L  T  Q  P  C  I  F  L  R  I  C  W  I  I  P  R  S  I  S  I  S  C  L  G  T  A  K  E  K  V  A  K  L  L </first_frame>
            <second_frame>  V  F  L  Y  S  Q  I  Q  S  T  K  K  K  K  L  *  N  N  F  P  S  H  *  *  W  Q  F  H  C  C  K  F  E  R  E  G  G  F  F  F  L  Q  T  I  S  L  F  I  I  R  L  F  S  E  F  Y  R  R  *  Q  K  I  L  K  K  R  G  K  K  L  E  E  A  K  V  S  L  A  I  F  R  E  G  V  *  R  N  Y  L  G  S  A  H  G  A  *  Y  L  L  P  F  K  E  K  R  R  F  L  *  R  R  L  W  R   : A  V  Y  P  W  N  S  K  H  V  K  I  K  V  Y  A  S  R  I  G  F  K  G  Y  C  L  L  G  C  F  C  A  I  M  Y  S  W  Y  I  L  A  W  T  E  D  Y  L  L  P  P  T  N  M  A  I  S  S  K  A  L  Y  *  T  Y  P  L  L  S  *  E  C  L  H  G  E  S  L  Q  A  T  W  M  G  N  S  *  I  S  *  A  C  L  *  C  C  F  V  *  *  *  S  G  H  A  Y  Y  Q  M  E  G  I  V  S  L  H  H  T  V  C  S  A  R  V  K  L  H  V  Y  W  I  T  K  T  I  Y  F  C  Y  *  P  G  P  I  *  V  C  *  A  S  I  D  L  W  N  H  W  R  K  I  Q  E  R  *  K  S  V  C  *  R  G  I  S  E  S  S  T  R  P  A  F  E  N  S  W  N  R  G  *  *  F  A  D  N  V  R  C  *  *  N  S  *  Q  A  H  H  R  S  F  K  M  V  *  *  H  S  S  N  S  S  P  S  F  *  E  L  L  V  L  F  *  I  *  A  *  A  Q  K  L  E  S  F  S  P  Q  V  S  E  W  Q  D  S  I  R  T  L  S  S  D  *  L  P  F  G  R  F  R  L  A  L  *  L  L  L  P  P  H  L  *  L  H  I  Q  N  E  S  L  Q  P  H  *  *  S  E  V  L  A  L  F  E  P  *  K  N  T  R  Y  H  L  *  R  I  *  F  I  *  H  A  S  *  G  V  H  I  Q  G  Y  H  W  *  H  G  T  S  T  S  F  L  L  S  R  A  S  S  C  A  F  A  G  *  S  R  E  V  *  V  S  L  A  W  E  L  Q  K  R  K  W  L  S  C   </second_frame>
            <third_frame>   C  F  Y  I  V  K  F  N  P  L  R  K  K  N  C  K  I  T  S  P  L  I  D  N  G  N  S  I  A  V  N  L  R  G  K  G  V  S  F  F  F  R  Q  S  L  F  S  *  F  V  Y  F  L  N  F  T  E  G  N  K  K  S  *  K  R  E  E  K  N  W  K  K  P  K  F  H  W  P  F  L  E  K  G  F  E  E  I  I  L  V  V  L  M  V  P  D  I  Y  Y  P  S  K  K  S  D  D  F  C  E  D  V  C  G  E  :  Q  S  T  P  G  I  V  S  M  S  R  L  R  C  M  L  R  G  L  D  L  K  A  I  V  F  L  V  V  F  V  P  L  C  I  V  G  I  Y  L  H  G  Q  K  I  T  Y  F  L  R  P  I  W  Q  S  P  P  K  P  F  I  E  L  T  H  Y  Y  H  E  N  V  S  M  E  N  L  C  K  Q  H  G  W  G  I  R  E  Y  P  R  R  V  Y  D  A  V  L  F  S  N  E  V  D  M  L  T  I  R  W  K  E  L  Y  P  Y  I  T  Q  F  V  L  L  E  S  N  S  T  F  T  G  L  P  K  P  F  T  F  A  I  N  R  D  Q  F  K  F  V  E  P  R  L  T  Y  G  T  I  G  G  R  F  R  K  G  E  N  P  F  V  E  E  A  Y  Q  R  V  A  L  D  Q  L  L  R  I  A  G  I  E  D  D  D  L  L  I  M  S  D  V  D  E  I  P  S  R  H  T  I  D  L  L  R  W  C  D  D  I  P  P  I  L  H  L  H  F  R  N  Y  L  Y  S  F  E  F  E  L  K  H  R  S  W  R  A  S  V  H  R  Y  Q  S  G  K  T  R  Y  V  H  Y  R  Q  T  D  Y  L  L  A  D  S  G  W  H  C  S  F  C  F  R  H  I  S  D  F  I  F  K  M  K  A  Y  S  H  T  D  R  V  R  F  L  H  Y  L  N  P  R  R  I  Q  D  I  I  C  E  G  S  D  L  Y  D  M  L  P  E  E  Y  T  F  K  D  I  I  G  N  M  G  P  L  P  H  S  Y  S  A  V  H  L  P  A  H  L  L  D  N  P  E  K  Y  K  Y  L  L  P  G  N  C  K  R  E  S  G  *  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17519" stop="17671"/>
                    <exon start="18159" stop="19259"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KREEKNWKKPKFHWPFLEKGFEEIILVVLMVPDIYYPSKKSDDFCEDVCGEQSTPGIVSMSRLRCMLRGLDLKAIVFLVVFVPLCIVGIYLHGQKITYFLRPIWQSPPKPFIELTHYYHENVSMENLCKQHGWGIREYPRRVYDAVLFSNEVDMLTIRWKELYPYITQFVLLESNSTFTGLPKPFTFAINRDQFKFVEPRLTYGTIGGRFRKGENPFVEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSRHTIDLLRWCDDIPPILHLHFRNYLYSFEFELKHRSWRASVHRYQSGKTRYVHYRQTDYLLADSGWHCSFCFRHISDFIFKMKAYSHTDRVRFLHYLNPRRIQDIICEGSDLYDMLPEEYTFKDIIGNMGPLPHSYSAVHLPAHLLDNPEKYKYLLPGNCKRESG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23988" PGL_stop="20619"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23988" e_stop="23849"/>
            <exon e_start="23015" e_stop="22883"/>
            <exon e_start="22685" e_stop="22499"/>
            <exon e_start="22227" e_stop="21731"/>
            <exon e_start="21559" e_stop="21257"/>
            <exon e_start="21165" e_stop="20619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="0.936"/>
          <exon-intron don_prob="0.985" acc_prob="0.992" e_score="0.940"/>
          <exon-intron don_prob="0.991" acc_prob="0.958" e_score="0.963"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.953"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="23988" e_stop="23849" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23848" i_stop="23016" i_length="833"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="23015" e_stop="22883" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22882" i_stop="22686" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="22685" e_stop="22499" e_length="187"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.958">
            <gDNA_intron_boundary i_start="22498" i_stop="22228" i_length="271"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="22227" e_stop="21731" e_length="497"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21730" i_stop="21560" i_length="171"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21559" e_stop="21257" e_length="303"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="21256" i_stop="21166" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="21165" e_stop="20619" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23988" stop="23849"/>
              <exon start="23015" stop="22883"/>
              <exon start="22685" stop="22499"/>
              <exon start="22227" stop="21891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23988" stop="23849"/>
              <exon start="23015" stop="22883"/>
              <exon start="22685" stop="22499"/>
              <exon start="22227" stop="21922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23917" stop="23849"/>
              <exon start="23015" stop="22883"/>
              <exon start="22685" stop="22499"/>
              <exon start="22227" stop="21969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21956" stop="21731"/>
              <exon start="21559" stop="21257"/>
              <exon start="21165" stop="20901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21955" stop="21731"/>
              <exon start="21559" stop="21280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21447" stop="21257"/>
              <exon start="21165" stop="20619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21269" stop="21257"/>
              <exon start="21165" stop="20665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349697" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGAAAGGGGGCAAAATTCAGGCACCATAAAACCAGAGTTTTTTCTCTTCTTCGAATGTGTTAAATAGATACACTGAAACTCAGATTCACCGAATTTTCTTCAAAAATCTTGAAATTTTTTTCGATCCTTTATGGGAAG : GTCTTGGCTTATTAATGGCAGAGGGCTTGCAAGTAAAGTTAAAAATGCCAGTGCCCCTGCTGCTCATCAAATCAAAGATTGTGGGGCAAAGCGGCAATGCCCAAACTGCAACTACTCTATTGATAACAAAGAT : GTTTCTCATGAATGGCCTGGTCTACCTGTTGGTGTGAAATTTGATCCATCTGATGCTGAGCTCGTGGAGCATTTAGAAGCAAAGTGTGGGGTGGGAAATTCAGAACAACACAAATTCATTGATGAGTTCATCCCGACCCTTGAGGTTCACGAAGGAATTTGCTACACCCATCCTGAAAATCTTCCTG : GTTCAAAAAAGGATGGAAGTAGCATTCACTTCTTTTATCGCATTACTAATGCATATGCAACTGGTAAACGGAAGCGTAGAAAGATTCATGATGAAAATAATTTGATGAAAGAACATGTCCGCTGGCACAAGACTGGAAAGACCAAGGTTGTTATGGAGAATGGATTCCAAAAGGGATGCAAGAAGGTCATGGTTCTCTATCAAACTCTTAAGAAGGGGTCGAAGCAGGAAAAGACTAATTGGGTAATGCATCAGTACCACCTGGGCCCTGATGAAGATGAAAAAGAAGGTGAATATGTGGTTTCAAAAATCTTTTACCAACAGCAGAAGCAATCTGTCAAGGCCAATGATTGTTGTGACAATGAGGAAGCCAGTGTGGGAGCGAATCAAACTGGGCCTACAACTCCCAAGACGGTTACACCCAATCCCCCTCGAGATGGAGAAACCCCTTCCTATGATGATATTTTAGATGAATCTTTACCCTTCTCACCTGATCAG : GAAGTGGAAGTTGCCAAAGAACCAGGGCAGCCTTCTGATGCTAAAATTAAGTGTGAGATGGAGTACTCCACATGCTTGGCTGGAGAATCACAAGCAGCTGATGCAAATGATGTTCATAATTCTCTGTTGTGTGATGAACATAATGATTATTCACTTCTTGATAGTTTTGGACCCAATCTTGGCCCTTCTGTTGACTACACTCATAGCACTTGCCATTTACCAGAAGTGAATGGTAACACAACCTGTGGAATTTCAGAATTGGATAACTTGGAACTGGATAGTCCTCCAGACTTCCAACTTGCA : GATTTGCCGTTTGGTTCTCAAGAGAATATCTTTAGTTGGTTGGACCGGCTATAGAGATGATGGCAATGAGATAATGCTTTATGCATTCTCGGATGGAGAATATACTTCAACAAGATTGTGTTCTTGAACAGCTACAGGAATCTTTCTTCAATTTCAGTTTTCGTGGTTTCAACAAATCCTTATCAAAAAATGCTCATTTTCCCACCATTACTACAGCCCACAGAAGAAAAGAAAACAGAAATATTGCTATATCTAAAATGCTGGACGATATACAAGTTGAAGGAGTTGTTGCAAGAACCTACTACAATATACCAAGGATCAACGTTTGGGAGTTGGAACTGTTACACCTTAGCTTATTGAATTGGCTCAAACTTTGATTTAATGTTCTGATTTCTCTTGTCAAGACTCTCATATCCCTTCTGTTCTATTCAGCATGTTCTGTTCTGACCCCCAAATACTTCGGGAAGTTTCTCGTTTGTGCTAGTTTATATTTTACTTGAAGTGTGGACAGGATTCTATTGCTTTCTTATGCATCTTTCATTGTCTG</gDNA_template>
            <first_frame> G  E  R  G  Q  N  S  G  T  I  K  P  E  F  F  L  F  F  E  C  V  K  *  I  H  *  N  S  D  S  P  N  F  L  Q  K  S  *  N  F  F  R  S  F  M  G  R :   S  W  L  I  N  G  R  G  L  A  S  K  V  K  N  A  S  A  P  A  A  H  Q  I  K  D  C  G  A  K  R  Q  C  P  N  C  N  Y  S  I  D  N  K  D  :  V  S  H  E  W  P  G  L  P  V  G  V  K  F  D  P  S  D  A  E  L  V  E  H  L  E  A  K  C  G  V  G  N  S  E  Q  H  K  F  I  D  E  F  I  P  T  L  E  V  H  E  G  I  C  Y  T  H  P  E  N  L  P   : G  S  K  K  D  G  S  S  I  H  F  F  Y  R  I  T  N  A  Y  A  T  G  K  R  K  R  R  K  I  H  D  E  N  N  L  M  K  E  H  V  R  W  H  K  T  G  K  T  K  V  V  M  E  N  G  F  Q  K  G  C  K  K  V  M  V  L  Y  Q  T  L  K  K  G  S  K  Q  E  K  T  N  W  V  M  H  Q  Y  H  L  G  P  D  E  D  E  K  E  G  E  Y  V  V  S  K  I  F  Y  Q  Q  Q  K  Q  S  V  K  A  N  D  C  C  D  N  E  E  A  S  V  G  A  N  Q  T  G  P  T  T  P  K  T  V  T  P  N  P  P  R  D  G  E  T  P  S  Y  D  D  I  L  D  E  S  L  P  F  S  P  D  Q  :  E  V  E  V  A  K  E  P  G  Q  P  S  D  A  K  I  K  C  E  M  E  Y  S  T  C  L  A  G  E  S  Q  A  A  D  A  N  D  V  H  N  S  L  L  C  D  E  H  N  D  Y  S  L  L  D  S  F  G  P  N  L  G  P  S  V  D  Y  T  H  S  T  C  H  L  P  E  V  N  G  N  T  T  C  G  I  S  E  L  D  N  L  E  L  D  S  P  P  D  F  Q  L  A  :  D  L  P  F  G  S  Q  E  N  I  F  S  W  L  D  R  L  *  R  *  W  Q  *  D  N  A  L  C  I  L  G  W  R  I  Y  F  N  K  I  V  F  L  N  S  Y  R  N  L  S  S  I  S  V  F  V  V  S  T  N  P  Y  Q  K  M  L  I  F  P  P  L  L  Q  P  T  E  E  K  K  T  E  I  L  L  Y  L  K  C  W  T  I  Y  K  L  K  E  L  L  Q  E  P  T  T  I  Y  Q  G  S  T  F  G  S  W  N  C  Y  T  L  A  Y  *  I  G  S  N  F  D  L  M  F  *  F  L  L  S  R  L  S  Y  P  F  C  S  I  Q  H  V  L  F  *  P  P  N  T  S  G  S  F  S  F  V  L  V  Y  I  L  L  E  V  W  T  G  F  Y  C  F  L  M  H  L  S  L  S  </first_frame>
            <second_frame>  E  K  G  G  K  I  Q  A  P  *  N  Q  S  F  F  S  S  S  N  V  L  N  R  Y  T  E  T  Q  I  H  R  I  F  F  K  N  L  E  I  F  F  D  P  L  W  E   : G  L  G  L  L  M  A  E  G  L  Q  V  K  L  K  M  P  V  P  L  L  L  I  K  S  K  I  V  G  Q  S  G  N  A  Q  T  A  T  T  L  L  I  T  K  M :   F  L  M  N  G  L  V  Y  L  L  V  *  N  L  I  H  L  M  L  S  S  W  S  I  *  K  Q  S  V  G  W  E  I  Q  N  N  T  N  S  L  M  S  S  S  R  P  L  R  F  T  K  E  F  A  T  P  I  L  K  I  F  L  :  V  Q  K  R  M  E  V  A  F  T  S  F  I  A  L  L  M  H  M  Q  L  V  N  G  S  V  E  R  F  M  M  K  I  I  *  *  K  N  M  S  A  G  T  R  L  E  R  P  R  L  L  W  R  M  D  S  K  R  D  A  R  R  S  W  F  S  I  K  L  L  R  R  G  R  S  R  K  R  L  I  G  *  C  I  S  T  T  W  A  L  M  K  M  K  K  K  V  N  M  W  F  Q  K  S  F  T  N  S  R  S  N  L  S  R  P  M  I  V  V  T  M  R  K  P  V  W  E  R  I  K  L  G  L  Q  L  P  R  R  L  H  P  I  P  L  E  M  E  K  P  L  P  M  M  I  F  *  M  N  L  Y  P  S  H  L  I  R :   K  W  K  L  P  K  N  Q  G  S  L  L  M  L  K  L  S  V  R  W  S  T  P  H  A  W  L  E  N  H  K  Q  L  M  Q  M  M  F  I  I  L  C  C  V  M  N  I  M  I  I  H  F  L  I  V  L  D  P  I  L  A  L  L  L  T  T  L  I  A  L  A  I  Y  Q  K  *  M  V  T  Q  P  V  E  F  Q  N  W  I  T  W  N  W  I  V  L  Q  T  S  N  L  Q :   I  C  R  L  V  L  K  R  I  S  L  V  G  W  T  G  Y  R  D  D  G  N  E  I  M  L  Y  A  F  S  D  G  E  Y  T  S  T  R  L  C  S  *  T  A  T  G  I  F  L  Q  F  Q  F  S  W  F  Q  Q  I  L  I  K  K  C  S  F  S  H  H  Y  Y  S  P  Q  K  K  R  K  Q  K  Y  C  Y  I  *  N  A  G  R  Y  T  S  *  R  S  C  C  K  N  L  L  Q  Y  T  K  D  Q  R  L  G  V  G  T  V  T  P  *  L  I  E  L  A  Q  T  L  I  *  C  S  D  F  S  C  Q  D  S  H  I  P  S  V  L  F  S  M  F  C  S  D  P  Q  I  L  R  E  V  S  R  L  C  *  F  I  F  Y  L  K  C  G  Q  D  S  I  A  F  L  C  I  F  H  C  L </second_frame>
            <third_frame>   R  K  G  A  K  F  R  H  H  K  T  R  V  F  S  L  L  R  M  C  *  I  D  T  L  K  L  R  F  T  E  F  S  S  K  I  L  K  F  F  S  I  L  Y  G  K  :  V  L  A  Y  *  W  Q  R  A  C  K  *  S  *  K  C  Q  C  P  C  C  S  S  N  Q  R  L  W  G  K  A  A  M  P  K  L  Q  L  L  Y  *  *  Q  R   : C  F  S  *  M  A  W  S  T  C  W  C  E  I  *  S  I  *  C  *  A  R  G  A  F  R  S  K  V  W  G  G  K  F  R  T  T  Q  I  H  *  *  V  H  P  D  P  *  G  S  R  R  N  L  L  H  P  S  *  K  S  S  W :   F  K  K  G  W  K  *  H  S  L  L  L  S  H  Y  *  C  I  C  N  W  *  T  E  A  *  K  D  S  *  *  K  *  F  D  E  R  T  C  P  L  A  Q  D  W  K  D  Q  G  C  Y  G  E  W  I  P  K  G  M  Q  E  G  H  G  S  L  S  N  S  *  E  G  V  E  A  G  K  D  *  L  G  N  A  S  V  P  P  G  P  *  *  R  *  K  R  R  *  I  C  G  F  K  N  L  L  P  T  A  E  A  I  C  Q  G  Q  *  L  L  *  Q  *  G  S  Q  C  G  S  E  S  N  W  A  Y  N  S  Q  D  G  Y  T  Q  S  P  S  R  W  R  N  P  F  L  *  *  Y  F  R  *  I  F  T  L  L  T  *  S   : G  S  G  S  C  Q  R  T  R  A  A  F  *  C  *  N  *  V  *  D  G  V  L  H  M  L  G  W  R  I  T  S  S  *  C  K  *  C  S  *  F  S  V  V  *  *  T  *  *  L  F  T  S  *  *  F  W  T  Q  S  W  P  F  C  *  L  H  S  *  H  L  P  F  T  R  S  E  W  *  H  N  L  W  N  F  R  I  G  *  L  G  T  G  *  S  S  R  L  P  T  C   : R  F  A  V  W  F  S  R  E  Y  L  *  L  V  G  P  A  I  E  M  M  A  M  R  *  C  F  M  H  S  R  M  E  N  I  L  Q  Q  D  C  V  L  E  Q  L  Q  E  S  F  F  N  F  S  F  R  G  F  N  K  S  L  S  K  N  A  H  F  P  T  I  T  T  A  H  R  R  K  E  N  R  N  I  A  I  S  K  M  L  D  D  I  Q  V  E  G  V  V  A  R  T  Y  Y  N  I  P  R  I  N  V  W  E  L  E  L  L  H  L  S  L  L  N  W  L  K  L  *  F  N  V  L  I  S  L  V  K  T  L  I  S  L  L  F  Y  S  A  C  S  V  L  T  P  K  Y  F  G  K  F  L  V  C  A  S  L  Y  F  T  *  S  V  D  R  I  L  L  L  S  Y  A  S  F  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23874" stop="23849"/>
                    <exon start="23015" stop="22883"/>
                    <exon start="22685" stop="22499"/>
                    <exon start="22227" stop="21731"/>
                    <exon start="21559" stop="21257"/>
                    <exon start="21165" stop="21112"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1197</number_coding_nucleotides>
                  <number_encoded_amino_acids>399</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFRSFMGRSWLINGRGLASKVKNASAPAAHQIKDCGAKRQCPNCNYSIDNKDVSHEWPGLPVGVKFDPSDAELVEHLEAKCGVGNSEQHKFIDEFIPTLEVHEGICYTHPENLPGSKKDGSSIHFFYRITNAYATGKRKRRKIHDENNLMKEHVRWHKTGKTKVVMENGFQKGCKKVMVLYQTLKKGSKQEKTNWVMHQYHLGPDEDEKEGEYVVSKIFYQQQKQSVKANDCCDNEEASVGANQTGPTTPKTVTPNPPRDGETPSYDDILDESLPFSPDQEVEVAKEPGQPSDAKIKCEMEYSTCLAGESQAADANDVHNSLLCDEHNDYSLLDSFGPNLGPSVDYTHSTCHLPEVNGNTTCGISELDNLELDSPPDFQLADLPFGSQENIFSWLDRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21091" stop="20789"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFMHSRMENILQQDCVLEQLQESFFNFSFRGFNKSLSKNAHFPTITTAHRRKENRNIAISKMLDDIQVEGVVARTYYNIPRINVWELELLHLSLLNWLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33028" PGL_stop="28950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33028" e_stop="32481"/>
            <exon e_start="31966" e_stop="31834"/>
            <exon e_start="31718" e_stop="31523"/>
            <exon e_start="30467" e_stop="30343"/>
            <exon e_start="30241" e_stop="30083"/>
            <exon e_start="29580" e_stop="28950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.990"/>
          <exon-intron don_prob="0.905" acc_prob="0.993" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33028" e_stop="32481" e_length="548"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32480" i_stop="31967" i_length="514"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31966" e_stop="31834" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.760" acc_prob="0.993">
            <gDNA_intron_boundary i_start="31833" i_stop="31719" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="31718" e_stop="31523" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="31522" i_stop="30468" i_length="1055"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="30467" e_stop="30343" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.905" acc_prob="0.993">
            <gDNA_intron_boundary i_start="30342" i_stop="30242" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30241" e_stop="30083" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30082" i_stop="29581" i_length="502"/>
          </intron>
          <exon e_serial="6" e_score="0.948">
            <gDNA_exon_boundary e_start="29580" e_stop="28950" e_length="631"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33028" stop="32481"/>
              <exon start="31966" stop="31834"/>
              <exon start="31718" stop="31700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33009" stop="32481"/>
              <exon start="31966" stop="31834"/>
              <exon start="31718" stop="31633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33001" stop="32568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32998" stop="32604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32993" stop="32481"/>
              <exon start="31966" stop="31857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32988" stop="32481"/>
              <exon start="31966" stop="31863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32825" stop="32481"/>
              <exon start="31966" stop="31834"/>
              <exon start="31718" stop="31659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31861" stop="31834"/>
              <exon start="31718" stop="31523"/>
              <exon start="30467" stop="30343"/>
              <exon start="30241" stop="30083"/>
              <exon start="29580" stop="29263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30370" stop="30343"/>
              <exon start="30241" stop="30083"/>
              <exon start="29580" stop="29185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30225" stop="30083"/>
              <exon start="29580" stop="28950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTCATCTCTATCTTTCATTATCTTTCCTCTTATTCTACTCACTCTTCACCTTATTTATCTCTCTTTTTTCTTCTCCTCCTCCTGATAGCCTCAATTGATCCACCAACCAAACCAGCTGATCTACTTCTTCTGAACTTTTTATTTTTCAATTGAACCAGTAGGAATTTCTGGGGTTTCTTGTTTGTGGGGTTCATTTTTCTCTTGTTTTAAACACAAGGGCATGTTGTAGATTTGTTTCTGGTTTGTGGGTCTATGAGTTTTCTGGTTCTTGGTCATAAAGTCTTGAACTTTTTTTGCTGCTTCAAATGCTAGGTGAATTGTTATTAAGTGTTTCGAATTTGGTAGTTAAATAGATGTGCTACTAGTTCATTCTTGAAGTTATTATAGGGGGAGAGTATTTGGGGTCTGGAAAATGGGATCTGCTAATGGGTTTTACTCCGGAGAAGAAGAGTTCAATTTGGAGGCGAAATGGTTAATTGATCCGAAGCTTCTGTTCGTTGGTCCTAAGATTGGAGAGGGTGCTCATGCCAAAGTGTATGAGGGAAA : ATACAGAAACCAGAATGTAGCAATAAAGATTGTGCATAAAGGGGAGACACCTGAGGAGATTGCCAAGAGGGAATCTCGTTTTGGAAGGGAGGTTGCTATGTTATCCAGAGTTCAGCACAAGAACTTAGTGAAG : TTCATAGGAGCTTGCAAGGAGCCTGTCATGGTCATAGTAACTGAACTTCTTCTCGGGGGGACGCTGAGGAAATACTTGCTGAACCTGAGGCCAAGGTGCTTGGATACTGGTGTCGCTATTAGATTTGCCCTTGATATAGCCCGTGCAATGGAGTGCTTGCACTCTCATGGTATCATTCATCGCGACCTAAAACCTG : AGAACTTGCTTTTGACTGCGGACCACAAAACTGTCAAACTTGCGGATTTTGGTTTGGCAAGAGAAGAATCATTGACAGAGATGATGACTGCTGAAACTGGAACCTATCGCTGGATGGCTCCAGAG : CTCTACAGCACGGTCACTTTAAGACACGGCGAGAAGAAGCATTATAATCATAAAGTAGATGCCTACAGTTTTGCGATCGTTCTGTGGGAACTCGTACATAACAAATTACCATTTGAGGGCATGTCTAATTTACAGGCTGCTTATGCAGCTGCTTTTAAG : AATGTGAGACCAAGTGCAGATGATCTCCCCGAGGATTTGGCAGTAATTGTAACTTCGTGTTGGAAAGAGGATCCAAACACTCGTCCCAACTTCACTCAGATAATACAGATGCTTCTTCATTTTCTCTCTTCAGTTTCCCCTCCGGAACCAGTAATACCAGCTAGGATTTTCACTTCAGAGAATCATGTATTACCACCGGAGTCTCCAGGTACCAGCTCGTTAATGTCCAAGCGTGATGACTCGGTTGAGACCCCTAAAACACCCATGGAGAATCAGCCAAGAGGTTTCTTCTTCTGTTTTAACCAATGCTACTGATCCCCAAGGGAAAAGTTTGTTAATTCTCTAGAAAATACTCGGAGTTGAGCTATCTTATTATACAATAGTAAGCTCACAAAATGTTTAGCCCAGATATGTCACTAGATAACTTAGCTTTTGGTCTTTCTTCCACATAAGATAAAAAGGTACACTTTTGAGTTTTAGCCATGGTAATTCAAAGGTGAAGGACGTTGTTGCAGGAAGATGCATGATCTAGACTCGCGTTCTGACTTAATTGTGAGGAGTTGGGTTGCTGTGATGTATATTATAGTTGTAAAAAATAAGGTCCATCCAAAGACCTGTACTCCTATATTTT</gDNA_template>
            <first_frame> H  S  S  L  S  F  I  I  F  P  L  I  L  L  T  L  H  L  I  Y  L  S  F  F  F  S  S  S  *  *  P  Q  L  I  H  Q  P  N  Q  L  I  Y  F  F  *  T  F  Y  F  S  I  E  P  V  G  I  S  G  V  S  C  L  W  G  S  F  F  S  C  F  K  H  K  G  M  L  *  I  C  F  W  F  V  G  L  *  V  F  W  F  L  V  I  K  S  *  T  F  F  A  A  S  N  A  R  *  I  V  I  K  C  F  E  F  G  S  *  I  D  V  L  L  V  H  S  *  S  Y  Y  R  G  R  V  F  G  V  W  K  M  G  S  A  N  G  F  Y  S  G  E  E  E  F  N  L  E  A  K  W  L  I  D  P  K  L  L  F  V  G  P  K  I  G  E  G  A  H  A  K  V  Y  E  G  K :   Y  R  N  Q  N  V  A  I  K  I  V  H  K  G  E  T  P  E  E  I  A  K  R  E  S  R  F  G  R  E  V  A  M  L  S  R  V  Q  H  K  N  L  V  K  :  F  I  G  A  C  K  E  P  V  M  V  I  V  T  E  L  L  L  G  G  T  L  R  K  Y  L  L  N  L  R  P  R  C  L  D  T  G  V  A  I  R  F  A  L  D  I  A  R  A  M  E  C  L  H  S  H  G  I  I  H  R  D  L  K  P   : E  N  L  L  L  T  A  D  H  K  T  V  K  L  A  D  F  G  L  A  R  E  E  S  L  T  E  M  M  T  A  E  T  G  T  Y  R  W  M  A  P  E  :  L  Y  S  T  V  T  L  R  H  G  E  K  K  H  Y  N  H  K  V  D  A  Y  S  F  A  I  V  L  W  E  L  V  H  N  K  L  P  F  E  G  M  S  N  L  Q  A  A  Y  A  A  A  F  K  :  N  V  R  P  S  A  D  D  L  P  E  D  L  A  V  I  V  T  S  C  W  K  E  D  P  N  T  R  P  N  F  T  Q  I  I  Q  M  L  L  H  F  L  S  S  V  S  P  P  E  P  V  I  P  A  R  I  F  T  S  E  N  H  V  L  P  P  E  S  P  G  T  S  S  L  M  S  K  R  D  D  S  V  E  T  P  K  T  P  M  E  N  Q  P  R  G  F  F  F  C  F  N  Q  C  Y  *  S  P  R  E  K  F  V  N  S  L  E  N  T  R  S  *  A  I  L  L  Y  N  S  K  L  T  K  C  L  A  Q  I  C  H  *  I  T  *  L  L  V  F  L  P  H  K  I  K  R  Y  T  F  E  F  *  P  W  *  F  K  G  E  G  R  C  C  R  K  M  H  D  L  D  S  R  S  D  L  I  V  R  S  W  V  A  V  M  Y  I  I  V  V  K  N  K  V  H  P  K  T  C  T  P  I  F  </first_frame>
            <second_frame>  I  H  L  Y  L  S  L  S  F  L  L  F  Y  S  L  F  T  L  F  I  S  L  F  S  S  P  P  P  D  S  L  N  *  S  T  N  Q  T  S  *  S  T  S  S  E  L  F  I  F  Q  L  N  Q  *  E  F  L  G  F  L  V  C  G  V  H  F  S  L  V  L  N  T  R  A  C  C  R  F  V  S  G  L  W  V  Y  E  F  S  G  S  W  S  *  S  L  E  L  F  L  L  L  Q  M  L  G  E  L  L  L  S  V  S  N  L  V  V  K  *  M  C  Y  *  F  I  L  E  V  I  I  G  G  E  Y  L  G  S  G  K  W  D  L  L  M  G  F  T  P  E  K  K  S  S  I  W  R  R  N  G  *  L  I  R  S  F  C  S  L  V  L  R  L  E  R  V  L  M  P  K  C  M  R  E   : N  T  E  T  R  M  *  Q  *  R  L  C  I  K  G  R  H  L  R  R  L  P  R  G  N  L  V  L  E  G  R  L  L  C  Y  P  E  F  S  T  R  T  *  *  S :   S  *  E  L  A  R  S  L  S  W  S  *  *  L  N  F  F  S  G  G  R  *  G  N  T  C  *  T  *  G  Q  G  A  W  I  L  V  S  L  L  D  L  P  L  I  *  P  V  Q  W  S  A  C  T  L  M  V  S  F  I  A  T  *  N  L  :  R  T  C  F  *  L  R  T  T  K  L  S  N  L  R  I  L  V  W  Q  E  K  N  H  *  Q  R  *  *  L  L  K  L  E  P  I  A  G  W  L  Q  S :   S  T  A  R  S  L  *  D  T  A  R  R  S  I  I  I  I  K  *  M  P  T  V  L  R  S  F  C  G  N  S  Y  I  T  N  Y  H  L  R  A  C  L  I  Y  R  L  L  M  Q  L  L  L  R :   M  *  D  Q  V  Q  M  I  S  P  R  I  W  Q  *  L  *  L  R  V  G  K  R  I  Q  T  L  V  P  T  S  L  R  *  Y  R  C  F  F  I  F  S  L  Q  F  P  L  R  N  Q  *  Y  Q  L  G  F  S  L  Q  R  I  M  Y  Y  H  R  S  L  Q  V  P  A  R  *  C  P  S  V  M  T  R  L  R  P  L  K  H  P  W  R  I  S  Q  E  V  S  S  S  V  L  T  N  A  T  D  P  Q  G  K  S  L  L  I  L  *  K  I  L  G  V  E  L  S  Y  Y  T  I  V  S  S  Q  N  V  *  P  R  Y  V  T  R  *  L  S  F  W  S  F  F  H  I  R  *  K  G  T  L  L  S  F  S  H  G  N  S  K  V  K  D  V  V  A  G  R  C  M  I  *  T  R  V  L  T  *  L  *  G  V  G  L  L  *  C  I  L  *  L  *  K  I  R  S  I  Q  R  P  V  L  L  Y  F </second_frame>
            <third_frame>   F  I  S  I  F  H  Y  L  S  S  Y  S  T  H  S  S  P  Y  L  S  L  F  F  L  L  L  L  L  I  A  S  I  D  P  P  T  K  P  A  D  L  L  L  L  N  F  L  F  F  N  *  T  S  R  N  F  W  G  F  L  F  V  G  F  I  F  L  L  F  *  T  Q  G  H  V  V  D  L  F  L  V  C  G  S  M  S  F  L  V  L  G  H  K  V  L  N  F  F  C  C  F  K  C  *  V  N  C  Y  *  V  F  R  I  W  *  L  N  R  C  A  T  S  S  F  L  K  L  L  *  G  E  S  I  W  G  L  E  N  G  I  C  *  W  V  L  L  R  R  R  R  V  Q  F  G  G  E  M  V  N  *  S  E  A  S  V  R  W  S  *  D  W  R  G  C  S  C  Q  S  V  *  G  K  :  I  Q  K  P  E  C  S  N  K  D  C  A  *  R  G  D  T  *  G  D  C  Q  E  G  I  S  F  W  K  G  G  C  Y  V  I  Q  S  S  A  Q  E  L  S  E   : V  H  R  S  L  Q  G  A  C  H  G  H  S  N  *  T  S  S  R  G  D  A  E  E  I  L  A  E  P  E  A  K  V  L  G  Y  W  C  R  Y  *  I  C  P  *  Y  S  P  C  N  G  V  L  A  L  S  W  Y  H  S  S  R  P  K  T  * :   E  L  A  F  D  C  G  P  Q  N  C  Q  T  C  G  F  W  F  G  K  R  R  I  I  D  R  D  D  D  C  *  N  W  N  L  S  L  D  G  S  R   : A  L  Q  H  G  H  F  K  T  R  R  E  E  A  L  *  S  *  S  R  C  L  Q  F  C  D  R  S  V  G  T  R  T  *  Q  I  T  I  *  G  H  V  *  F  T  G  C  L  C  S  C  F  *   : E  C  E  T  K  C  R  *  S  P  R  G  F  G  S  N  C  N  F  V  L  E  R  G  S  K  H  S  S  Q  L  H  S  D  N  T  D  A  S  S  F  S  L  F  S  F  P  S  G  T  S  N  T  S  *  D  F  H  F  R  E  S  C  I  T  T  G  V  S  R  Y  Q  L  V  N  V  Q  A  *  *  L  G  *  D  P  *  N  T  H  G  E  S  A  K  R  F  L  L  L  F  *  P  M  L  L  I  P  K  G  K  V  C  *  F  S  R  K  Y  S  E  L  S  Y  L  I  I  Q  *  *  A  H  K  M  F  S  P  D  M  S  L  D  N  L  A  F  G  L  S  S  T  *  D  K  K  V  H  F  *  V  L  A  M  V  I  Q  R  *  R  T  L  L  Q  E  D  A  *  S  R  L  A  F  *  L  N  C  E  E  L  G  C  C  D  V  Y  Y  S  C  K  K  *  G  P  S  K  D  L  Y  S  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32650" stop="32481"/>
                    <exon start="31966" stop="31834"/>
                    <exon start="31718" stop="31523"/>
                    <exon start="30467" stop="30343"/>
                    <exon start="30241" stop="30083"/>
                    <exon start="29580" stop="29266"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYYRGRVFGVWKMGSANGFYSGEEEFNLEAKWLIDPKLLFVGPKIGEGAHAKVYEGKYRNQNVAIKIVHKGETPEEIAKRESRFGREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNLRPRCLDTGVAIRFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRHGEKKHYNHKVDAYSFAIVLWELVHNKLPFEGMSNLQAAYAAAFKNVRPSADDLPEDLAVIVTSCWKEDPNTRPNFTQIIQMLLHFLSSVSPPEPVIPARIFTSENHVLPPESPGTSSLMSKRDDSVETPKTPMENQPRGFFFCFNQCY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39905" PGL_stop="40917"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39905" e_stop="40029"/>
            <exon e_start="40302" e_stop="40366"/>
            <exon e_start="40452" e_stop="40518"/>
            <exon e_start="40632" e_stop="40677"/>
            <exon e_start="40755" e_stop="40917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.760" e_score="0.928"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.938"/>
          <exon-intron don_prob="0.941" acc_prob="0.782" e_score="0.985"/>
          <exon-intron don_prob="0.966" acc_prob="0.868" e_score="0.870"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="39905" e_stop="40029" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.760">
            <gDNA_intron_boundary i_start="40030" i_stop="40301" i_length="272"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="40302" e_stop="40366" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40367" i_stop="40451" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="40452" e_stop="40518" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="0.782">
            <gDNA_intron_boundary i_start="40519" i_stop="40631" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.870">
            <gDNA_exon_boundary e_start="40632" e_stop="40677" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.966" acc_prob="0.868">
            <gDNA_intron_boundary i_start="40678" i_stop="40754" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.939">
            <gDNA_exon_boundary e_start="40755" e_stop="40917" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39905" stop="40029"/>
              <exon start="40302" stop="40366"/>
              <exon start="40452" stop="40518"/>
              <exon start="40632" stop="40677"/>
              <exon start="40755" stop="40917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467952" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTACTGACATTATTAGAATTTATATGCTTGTGATTTTCTCTTGCATTGCACTTCATGGATTCATTTTCAGTCTGTGGACCTCAGCTGAAGGCCTGACTACAAGCCGAATAGCTATCCAACAG : TTGAAAATAATGACTCCTTGCGTAATTTTTGCTGGCCCTGTTGGGCTTGGATTTGGTTATATGAG : TGCAAAAGGAGAAAATGTCTTTCCGGCAATTAGCCCCACCTTGTCTAGCTTGCTCCTGATTGCCAGT : TGCCTCTTCTACTCCTATAGCAGACAGTCGGATACCTTTTGTTCTG : GTGGTATTCTTTTATCTTGCGGAGCTTCACTTGGTGTAGTCATTCAATGGATTATCCAGGTCGCCATTGCTCACCTCCGACTCTTTTATATTCAATTTTATTGTTTAGGGTTAAAAGACAACCTTTCCATGTTTTTCATATACTTGACATTTTATGTGCGAGT</gDNA_template>
            <first_frame> L  V  L  T  L  L  E  F  I  C  L  *  F  S  L  A  L  H  F  M  D  S  F  S  V  C  G  P  Q  L  K  A  *  L  Q  A  E  *  L  S  N  S :   *  K  *  *  L  L  A  *  F  L  L  A  L  L  G  L  D  L  V  I  *   : V  Q  K  E  K  M  S  F  R  Q  L  A  P  P  C  L  A  C  S  *  L  P  V :   A  S  S  T  P  I  A  D  S  R  I  P  F  V  L  :  V  V  F  F  Y  L  A  E  L  H  L  V  *  S  F  N  G  L  S  R  S  P  L  L  T  S  D  S  F  I  F  N  F  I  V  *  G  *  K  T  T  F  P  C  F  S  Y  T  *  H  F  M  C  E  </first_frame>
            <second_frame>  L  Y  *  H  Y  *  N  L  Y  A  C  D  F  L  L  H  C  T  S  W  I  H  F  Q  S  V  D  L  S  *  R  P  D  Y  K  P  N  S  Y  P  T   : V  E  N  N  D  S  L  R  N  F  C  W  P  C  W  A  W  I  W  L  Y  E  :  C  K  R  R  K  C  L  S  G  N  *  P  H  L  V  *  L  A  P  D  C  Q   : L  P  L  L  L  L  *  Q  T  V  G  Y  L  L  F  W :   W  Y  S  F  I  L  R  S  F  T  W  C  S  H  S  M  D  Y  P  G  R  H  C  S  P  P  T  L  L  Y  S  I  L  L  F  R  V  K  R  Q  P  F  H  V  F  H  I  L  D  I  L  C  A  S </second_frame>
            <third_frame>   C  T  D  I  I  R  I  Y  M  L  V  I  F  S  C  I  A  L  H  G  F  I  F  S  L  W  T  S  A  E  G  L  T  T  S  R  I  A  I  Q  Q  :  L  K  I  M  T  P  C  V  I  F  A  G  P  V  G  L  G  F  G  Y  M  S :   A  K  G  E  N  V  F  P  A  I  S  P  T  L  S  S  L  L  L  I  A  S  :  C  L  F  Y  S  Y  S  R  Q  S  D  T  F  C  S   : G  G  I  L  L  S  C  G  A  S  L  G  V  V  I  Q  W  I  I  Q  V  A  I  A  H  L  R  L  F  Y  I  Q  F  Y  C  L  G  L  K  D  N  L  S  M  F  F  I  Y  L  T  F  Y  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39907" stop="40029"/>
                    <exon start="40302" stop="40366"/>
                    <exon start="40452" stop="40518"/>
                    <exon start="40632" stop="40677"/>
                    <exon start="40755" stop="40915"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTDIIRIYMLVIFSCIALHGFIFSLWTSAEGLTTSRIAIQQLKIMTPCVIFAGPVGLGFGYMSAKGENVFPAISPTLSSLLLIASCLFYSYSRQSDTFCSGGILLSCGASLGVVIQWIIQVAIAHLRLFYIQFYCLGLKDNLSMFFIYLTFYVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="46701" PGL_stop="43846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46701" e_stop="46516"/>
            <exon e_start="46430" e_stop="46369"/>
            <exon e_start="46275" e_stop="46224"/>
            <exon e_start="45196" e_stop="45082"/>
            <exon e_start="44990" e_stop="44896"/>
            <exon e_start="44771" e_stop="44665"/>
            <exon e_start="44576" e_stop="44462"/>
            <exon e_start="44386" e_stop="44342"/>
            <exon e_start="44256" e_stop="43846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.972" e_score="0.914"/>
          <exon-intron don_prob="0.845" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.962"/>
          <exon-intron don_prob="0.388" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.692" acc_prob="0.958" e_score="0.968"/>
          <exon-intron don_prob="0.893" acc_prob="0.989" e_score="0.972"/>
          <exon-intron don_prob="0.867" acc_prob="0.821" e_score="0.948"/>
          <exon-intron don_prob="0.032" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="46701" e_stop="46516" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.972">
            <gDNA_intron_boundary i_start="46515" i_stop="46431" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46430" e_stop="46369" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.845" acc_prob="0.994">
            <gDNA_intron_boundary i_start="46368" i_stop="46276" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="46275" e_stop="46224" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46223" i_stop="45197" i_length="1027"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="45196" e_stop="45082" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.388" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45081" i_stop="44991" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="44990" e_stop="44896" e_length="95"/>
          </exon>
          <intron i_serial="5" don_prob="0.692" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44895" i_stop="44772" i_length="124"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="44771" e_stop="44665" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="0.893" acc_prob="0.989">
            <gDNA_intron_boundary i_start="44664" i_stop="44577" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="0.948">
            <gDNA_exon_boundary e_start="44576" e_stop="44462" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.867" acc_prob="0.821">
            <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44386" e_stop="44342" e_length="45"/>
          </exon>
          <intron i_serial="8" don_prob="0.032" acc_prob="0.990">
            <gDNA_intron_boundary i_start="44341" i_stop="44257" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44256" e_stop="43846" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46701" stop="46516"/>
              <exon start="46430" stop="46369"/>
              <exon start="46275" stop="46224"/>
              <exon start="45196" stop="45082"/>
              <exon start="44990" stop="44896"/>
              <exon start="44771" stop="44743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46699" stop="46516"/>
              <exon start="46430" stop="46369"/>
              <exon start="46275" stop="46224"/>
              <exon start="45196" stop="45082"/>
              <exon start="44990" stop="44977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46634" stop="46516"/>
              <exon start="46430" stop="46369"/>
              <exon start="46275" stop="46224"/>
              <exon start="45196" stop="45082"/>
              <exon start="44990" stop="44896"/>
              <exon start="44771" stop="44665"/>
              <exon start="44576" stop="44462"/>
              <exon start="44386" stop="44380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44525" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44516" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44516" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44515" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44515" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAATCATCAGAGAAGAAGATGAAAGAAGCAAAGCGTAGTCGTAAACGGAAGAGAGGAAAGGTTCATAAGAAATCTTCCACTCCGGCCGGAAACGATCCTTCTAAGGTCTCCGGCGTGAATCAGTCTATGGTTTCGAATACGGCGATCTCAAAGACTAAGAAACCTTCGTCTTTTCTCGATAAG : ATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTC : AGGAGATGAGGCGCTTAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTG : TATCATGCAGGGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCAGACTTTGGCTGCG : GAGATGCTCGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTCGCACATGATCCTTCAGTAATTGCTTGTGACATGTCAAAT : ACCCCTCTAGAGTCCTCGTCAGTTGATGTGGCCATCTTTTGCCTTTCATTGATGGGAACCGATTATCCAAGCTTTCTTCAGGAAGCGCGCAGAGTTCTTAAACCCAG : GGGGTGGCTTTTGATAGCAGAAGTTAAAAGCAGGCTTGATCCAACTACAGGGGGTGCAGACCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAG : GATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAG : GAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTGGATTTTTGAAATTGTAGTTATTTTAATTGTTTGAAAATTATAATAACTAAATTAATATGATACTGATGTATTTATTTGATGAGATTCA</gDNA_template>
            <first_frame> R  E  S  S  E  K  K  M  K  E  A  K  R  S  R  K  R  K  R  G  K  V  H  K  K  S  S  T  P  A  G  N  D  P  S  K  V  S  G  V  N  Q  S  M  V  S  N  T  A  I  S  K  T  K  K  P  S  S  F  L  D  K  :  M  K  A  R  L  S  G  G  H  F  R  M  L  N  E  K  L  Y  T  C  S :   G  D  E  A  L  N  Y  F  K  E  N  P  E  L  F  N  V  :  Y  H  A  G  Y  Q  E  Q  M  L  H  W  P  E  K  P  V  N  I  I  T  K  W  L  K  D  H  S  P  S  L  I  V  A  D  F  G  C   : G  D  A  R  L  A  R  S  V  K  N  K  V  W  S  L  D  L  V  A  H  D  P  S  V  I  A  C  D  M  S  N  :  T  P  L  E  S  S  S  V  D  V  A  I  F  C  L  S  L  M  G  T  D  Y  P  S  F  L  Q  E  A  R  R  V  L  K  P  R :   G  W  L  L  I  A  E  V  K  S  R  L  D  P  T  T  G  G  A  D  P  S  N  F  L  K  A  I  C  D  L  G  F  T  I  E  S  K  :  D  F  S  N  K  M  F  V  L  F  Y  L  K  K  K  :  E  K  Q  N  S  V  D  K  E  I  N  W  P  E  L  K  A  C  I  Y  K  R  R  *  A  W  P  *  Y  G  L  R  F  Y  Y  S  P  C  S  F  W  R  W  V  *  T  C  C  *  I  S  L  I  V  S  N  R  A  P  K  K  D  C  P  L  K  *  G  M  D  A  V  V  F  Q  R  M  R  F  T  M  I  L  G  E  K  *  S  I  L  *  I  S  S  L  R  S  R  I  S  I  G  I  I  V  V  Y  W  I  F  E  I  V  V  I  L  I  V  *  K  L  *  *  L  N  *  Y  D  T  D  V  F  I  *  *  D  S </first_frame>
            <second_frame>  E  N  H  Q  R  R  R  *  K  K  Q  S  V  V  V  N  G  R  E  E  R  F  I  R  N  L  P  L  R  P  E  T  I  L  L  R  S  P  A  *  I  S  L  W  F  R  I  R  R  S  Q  R  L  R  N  L  R  L  F  S  I  R :   *  R  R  D  Y  Q  E  D  T  S  V  C  L  M  K  N  S  T  L  A   : Q  E  M  R  R  L  I  I  S  R  K  I  R  N  F  L  M  C :   I  M  Q  G  I  R  S  K  C  Y  I  G  Q  K  N  L  L  I  *  S  Q  N  G  *  R  I  I  A  L  H  *  L  L  Q  T  L  A  A  :  E  M  L  G  W  Q  E  V  *  R  T  K  C  G  L  W  I  L  S  H  M  I  L  Q  *  L  L  V  T  C  Q  I :   P  L  *  S  P  R  Q  L  M  W  P  S  F  A  F  H  *  W  E  P  I  I  Q  A  F  F  R  K  R  A  E  F  L  N  P   : G  G  G  F  *  *  Q  K  L  K  A  G  L  I  Q  L  Q  G  V  Q  T  Q  A  I  F  *  K  L  F  V  I  L  G  L  L  L  S  Q  R :   I  S  L  T  K  C  L  C  C  S  T  *  R  K  R :   K  N  R  I  Q  *  T  K  R  L  I  G  L  S  S  R  H  V  F  I  N  G  A  E  L  G  H  N  M  V  *  D  F  T  I  V  P  V  H  S  G  D  G  F  K  L  V  A  R  S  H  S  L  F  Q  T  V  L  P  K  K  T  V  H  *  S  E  E  W  T  L  L  C  F  K  E  C  A  S  Q  *  F  *  E  K  S  S  L  F  F  E  S  H  L  *  E  V  G  L  V  S  A  L  L  *  Y  I  G  F  L  K  L  *  L  F  *  L  F  E  N  Y  N  N  *  I  N  M  I  L  M  Y  L  F  D  E  I   </second_frame>
            <third_frame>   R  I  I  R  E  E  D  E  R  S  K  A  *  S  *  T  E  E  R  K  G  S  *  E  I  F  H  S  G  R  K  R  S  F  *  G  L  R  R  E  S  V  Y  G  F  E  Y  G  D  L  K  D  *  E  T  F  V  F  S  R  *   : D  E  G  E  I  I  R  R  T  L  P  Y  A  *  *  K  T  L  H  L  L  :  R  R  *  G  A  *  L  F  Q  G  K  S  G  T  F  *  C   : V  S  C  R  V  S  G  A  N  V  T  L  A  R  K  T  C  *  Y  N  H  K  M  A  K  G  S  *  P  F  I  N  C  C  R  L  W  L  R :   R  C  S  A  G  K  K  C  E  E  Q  S  V  V  F  G  S  C  R  T  *  S  F  S  N  C  L  *  H  V  K   : Y  P  S  R  V  L  V  S  *  C  G  H  L  L  P  F  I  D  G  N  R  L  S  K  L  S  S  G  S  A  Q  S  S  *  T  Q  :  G  V  A  F  D  S  R  S  *  K  Q  A  *  S  N  Y  R  G  C  R  P  K  Q  F  F  E  S  Y  L  *  S  W  V  Y  Y  *  V  K   : G  F  L  *  Q  N  V  C  V  V  L  L  K  E  K   : G  K  T  E  F  S  R  Q  R  D  *  L  A  *  A  Q  G  M  Y  L  *  T  A  L  S  L  A  I  I  W  S  K  I  L  L  *  S  L  F  I  L  E  M  G  L  N  L  L  L  D  L  T  H  C  F  K  P  C  S  Q  K  R  L  S  T  E  V  R  N  G  R  C  C  V  S  K  N  A  L  H  N  D  S  R  R  K  V  V  Y  S  L  N  L  I  F  E  K  *  D  *  Y  R  H  Y  C  S  I  L  D  F  *  N  C  S  Y  F  N  C  L  K  I  I  I  T  K  L  I  *  Y  *  C  I  Y  L  M  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46701" stop="46516"/>
                    <exon start="46430" stop="46369"/>
                    <exon start="46275" stop="46224"/>
                    <exon start="45196" stop="45082"/>
                    <exon start="44990" stop="44896"/>
                    <exon start="44771" stop="44665"/>
                    <exon start="44576" stop="44462"/>
                    <exon start="44386" stop="44342"/>
                    <exon start="44256" stop="44185"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RESSEKKMKEAKRSRKRKRGKVHKKSSTPAGNDPSKVSGVNQSMVSNTAISKTKKPSSFLDKMKARLSGGHFRMLNEKLYTCSGDEALNYFKENPELFNVYHAGYQEQMLHWPEKPVNIITKWLKDHSPSLIVADFGCGDARLARSVKNKVWSLDLVAHDPSVIACDMSNTPLESSSVDVAIFCLSLMGTDYPSFLQEARRVLKPRGWLLIAEVKSRLDPTTGGADPSNFLKAICDLGFTIESKDFSNKMFVLFYLKKKEKQNSVDKEINWPELKACIYKRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46434" e_stop="46369"/>
            <exon e_start="46275" e_stop="46224"/>
            <exon e_start="45186" e_stop="45082"/>
            <exon e_start="44990" e_stop="44896"/>
            <exon e_start="44771" e_stop="44665"/>
            <exon e_start="44576" e_stop="44462"/>
            <exon e_start="44386" e_stop="44342"/>
            <exon e_start="44256" e_stop="43846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.845" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.896" e_score="0.962"/>
          <exon-intron don_prob="0.388" acc_prob="1.000" e_score="0.981"/>
          <exon-intron don_prob="0.692" acc_prob="0.958" e_score="0.968"/>
          <exon-intron don_prob="0.893" acc_prob="0.989" e_score="0.972"/>
          <exon-intron don_prob="0.867" acc_prob="0.821" e_score="0.939"/>
          <exon-intron don_prob="0.032" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46434" e_stop="46369" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.845" acc_prob="0.994">
            <gDNA_intron_boundary i_start="46368" i_stop="46276" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="46275" e_stop="46224" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.896">
            <gDNA_intron_boundary i_start="46223" i_stop="45187" i_length="1037"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="45186" e_stop="45082" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.388" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45081" i_stop="44991" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.968">
            <gDNA_exon_boundary e_start="44990" e_stop="44896" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.692" acc_prob="0.958">
            <gDNA_intron_boundary i_start="44895" i_stop="44772" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="44771" e_stop="44665" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.893" acc_prob="0.989">
            <gDNA_intron_boundary i_start="44664" i_stop="44577" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="0.939">
            <gDNA_exon_boundary e_start="44576" e_stop="44462" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.867" acc_prob="0.821">
            <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44386" e_stop="44342" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.032" acc_prob="0.990">
            <gDNA_intron_boundary i_start="44341" i_stop="44257" i_length="85"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44256" e_stop="43846" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46434" stop="46369"/>
              <exon start="46275" stop="46224"/>
              <exon start="45186" stop="45082"/>
              <exon start="44990" stop="44896"/>
              <exon start="44771" stop="44665"/>
              <exon start="44576" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="44217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44525" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44516" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44516" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44515" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44515" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTC : AGGAGATGAGGCGCTTAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTG : GGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCAGACTTTGGCTGCG : GAGATGCTCGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTCGCACATGATCCTTCAGTAATTGCTTGTGACATGTCAAAT : ACCCCTCTAGAGTCCTCGTCAGTTGATGTGGCCATCTTTTGCCTTTCATTGATGGGAACCGATTATCCAAGCTTTCTTCAGGAAGCGCGCAGAGTTCTTAAACCCAG : GGGGTGGCTTTTGATAGCAGAAGTTAAAAGCAGGCTTGATCCAACTACAGGGGGTGCAGACCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAG : GATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAG : GAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTGGATTTTTGAAATTGTAGTTATTTTAATTGTTTGAAAATTATAATAACTAAATTAATATGATACTGATGTATTTATTTGATGAGATTCA</gDNA_template>
            <first_frame> A  D  E  G  E  I  I  R  R  T  L  P  Y  A  *  *  K  T  L  H  L  L  :  R  R  *  G  A  *  L  F  Q  G  K  S  G  T  F  *  C   : G  Y  Q  E  Q  M  L  H  W  P  E  K  P  V  N  I  I  T  K  W  L  K  D  H  S  P  S  L  I  V  A  D  F  G  C   : G  D  A  R  L  A  R  S  V  K  N  K  V  W  S  L  D  L  V  A  H  D  P  S  V  I  A  C  D  M  S  N  :  T  P  L  E  S  S  S  V  D  V  A  I  F  C  L  S  L  M  G  T  D  Y  P  S  F  L  Q  E  A  R  R  V  L  K  P  R :   G  W  L  L  I  A  E  V  K  S  R  L  D  P  T  T  G  G  A  D  P  S  N  F  L  K  A  I  C  D  L  G  F  T  I  E  S  K  :  D  F  S  N  K  M  F  V  L  F  Y  L  K  K  K  :  E  K  Q  N  S  V  D  K  E  I  N  W  P  E  L  K  A  C  I  Y  K  R  R  *  A  W  P  *  Y  G  L  R  F  Y  Y  S  P  C  S  F  W  R  W  V  *  T  C  C  *  I  S  L  I  V  S  N  R  A  P  K  K  D  C  P  L  K  *  G  M  D  A  V  V  F  Q  R  M  R  F  T  M  I  L  G  E  K  *  S  I  L  *  I  S  S  L  R  S  R  I  S  I  G  I  I  V  V  Y  W  I  F  E  I  V  V  I  L  I  V  *  K  L  *  *  L  N  *  Y  D  T  D  V  F  I  *  *  D  S </first_frame>
            <second_frame>  Q  M  K  A  R  L  S  G  G  H  F  R  M  L  N  E  K  L  Y  T  C  S :   G  D  E  A  L  N  Y  F  K  E  N  P  E  L  F  N  V  :  G  I  R  S  K  C  Y  I  G  Q  K  N  L  L  I  *  S  Q  N  G  *  R  I  I  A  L  H  *  L  L  Q  T  L  A  A  :  E  M  L  G  W  Q  E  V  *  R  T  K  C  G  L  W  I  L  S  H  M  I  L  Q  *  L  L  V  T  C  Q  I :   P  L  *  S  P  R  Q  L  M  W  P  S  F  A  F  H  *  W  E  P  I  I  Q  A  F  F  R  K  R  A  E  F  L  N  P   : G  G  G  F  *  *  Q  K  L  K  A  G  L  I  Q  L  Q  G  V  Q  T  Q  A  I  F  *  K  L  F  V  I  L  G  L  L  L  S  Q  R :   I  S  L  T  K  C  L  C  C  S  T  *  R  K  R :   K  N  R  I  Q  *  T  K  R  L  I  G  L  S  S  R  H  V  F  I  N  G  A  E  L  G  H  N  M  V  *  D  F  T  I  V  P  V  H  S  G  D  G  F  K  L  V  A  R  S  H  S  L  F  Q  T  V  L  P  K  K  T  V  H  *  S  E  E  W  T  L  L  C  F  K  E  C  A  S  Q  *  F  *  E  K  S  S  L  F  F  E  S  H  L  *  E  V  G  L  V  S  A  L  L  *  Y  I  G  F  L  K  L  *  L  F  *  L  F  E  N  Y  N  N  *  I  N  M  I  L  M  Y  L  F  D  E  I   </second_frame>
            <third_frame>   R  *  R  R  D  Y  Q  E  D  T  S  V  C  L  M  K  N  S  T  L  A   : Q  E  M  R  R  L  I  I  S  R  K  I  R  N  F  L  M  W :   V  S  G  A  N  V  T  L  A  R  K  T  C  *  Y  N  H  K  M  A  K  G  S  *  P  F  I  N  C  C  R  L  W  L  R :   R  C  S  A  G  K  K  C  E  E  Q  S  V  V  F  G  S  C  R  T  *  S  F  S  N  C  L  *  H  V  K   : Y  P  S  R  V  L  V  S  *  C  G  H  L  L  P  F  I  D  G  N  R  L  S  K  L  S  S  G  S  A  Q  S  S  *  T  Q  :  G  V  A  F  D  S  R  S  *  K  Q  A  *  S  N  Y  R  G  C  R  P  K  Q  F  F  E  S  Y  L  *  S  W  V  Y  Y  *  V  K   : G  F  L  *  Q  N  V  C  V  V  L  L  K  E  K   : G  K  T  E  F  S  R  Q  R  D  *  L  A  *  A  Q  G  M  Y  L  *  T  A  L  S  L  A  I  I  W  S  K  I  L  L  *  S  L  F  I  L  E  M  G  L  N  L  L  L  D  L  T  H  C  F  K  P  C  S  Q  K  R  L  S  T  E  V  R  N  G  R  C  C  V  S  K  N  A  L  H  N  D  S  R  R  K  V  V  Y  S  L  N  L  I  F  E  K  *  D  *  Y  R  H  Y  C  S  I  L  D  F  *  N  C  S  Y  F  N  C  L  K  I  I  I  T  K  L  I  *  Y  *  C  I  Y  L  M  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46227" stop="46224"/>
                    <exon start="45186" stop="45082"/>
                    <exon start="44990" stop="44896"/>
                    <exon start="44771" stop="44665"/>
                    <exon start="44576" stop="44462"/>
                    <exon start="44386" stop="44342"/>
                    <exon start="44256" stop="44185"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGYQEQMLHWPEKPVNIITKWLKDHSPSLIVADFGCGDARLARSVKNKVWSLDLVAHDPSVIACDMSNTPLESSSVDVAIFCLSLMGTDYPSFLQEARRVLKPRGWLLIAEVKSRLDPTTGGADPSNFLKAICDLGFTIESKDFSNKMFVLFYLKKKEKQNSVDKEINWPELKACIYKRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="46654" e_stop="46516"/>
            <exon e_start="46430" e_stop="46369"/>
            <exon e_start="46275" e_stop="46224"/>
            <exon e_start="45186" e_stop="45082"/>
            <exon e_start="44990" e_stop="44896"/>
            <exon e_start="44761" e_stop="44661"/>
            <exon e_start="44545" e_stop="44462"/>
            <exon e_start="44386" e_stop="44342"/>
            <exon e_start="44256" e_stop="43846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.972" e_score="0.928"/>
          <exon-intron don_prob="0.845" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.896" e_score="0.962"/>
          <exon-intron don_prob="0.388" acc_prob="1.000" e_score="0.981"/>
          <exon-intron don_prob="0.692" acc_prob="0.000" e_score="0.968"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.941"/>
          <exon-intron don_prob="0.867" acc_prob="0.821" e_score="1.000"/>
          <exon-intron don_prob="0.032" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="46654" e_stop="46516" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.972">
            <gDNA_intron_boundary i_start="46515" i_stop="46431" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46430" e_stop="46369" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.845" acc_prob="0.994">
            <gDNA_intron_boundary i_start="46368" i_stop="46276" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="46275" e_stop="46224" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.896">
            <gDNA_intron_boundary i_start="46223" i_stop="45187" i_length="1037"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="45186" e_stop="45082" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.388" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45081" i_stop="44991" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="44990" e_stop="44896" e_length="95"/>
          </exon>
          <intron i_serial="5" don_prob="0.692" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44895" i_stop="44762" i_length="134"/>
          </intron>
          <exon e_serial="6" e_score="0.941">
            <gDNA_exon_boundary e_start="44761" e_stop="44661" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44660" i_stop="44546" i_length="115"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44545" e_stop="44462" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.867" acc_prob="0.821">
            <gDNA_intron_boundary i_start="44461" i_stop="44387" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44386" e_stop="44342" e_length="45"/>
          </exon>
          <intron i_serial="8" don_prob="0.032" acc_prob="0.990">
            <gDNA_intron_boundary i_start="44341" i_stop="44257" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44256" e_stop="43846" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46654" stop="46516"/>
              <exon start="46430" stop="46369"/>
              <exon start="46275" stop="46224"/>
              <exon start="45186" stop="45082"/>
              <exon start="44990" stop="44896"/>
              <exon start="44761" stop="44661"/>
              <exon start="44545" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="44163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44525" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44516" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44516" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44515" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44515" stop="44462"/>
              <exon start="44386" stop="44342"/>
              <exon start="44256" stop="43848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGAAGAGAGGAAAGGTTCATAAGAAATCTTCCACTCCGGCCGGAAACGATCCTTCTAAGGTCTCCGGCGTGAATCAGTCTATGGTTTCGAATACGGCGATCTCAAAGACTAAGAAACCTTCGTCTTTTCTCGATAAG : ATGAAGGCGAGATTATCAGGAGGACACTTCCGTATGCTTAATGAAAAACTCTACACTTGCTC : AGGAGATGAGGCGCTTAATTATTTCAAGGAAAATCCGGAACTTTTTAATGTG : GGTATCAGGAGCAAATGTTACATTGGCCAGAAAAACCTGTTAATATAATCACAAAATGGCTAAAGGATCATAGCCCTTCATTAATTGTTGCAGACTTTGGCTGCG : GAGATGCTCGGCTGGCAAGAAGTGTGAAGAACAAAGTGTGGTCTTTGGATCTTGTCGCACATGATCCTTCAGTAATTGCTTGTGACATGTCAAAT : AGTCCTCGTCAGTTGATGTGGCCATCTTTTGCCTTTCATTGATGGGAACCGATTATCCAAGCTTTCTTCAGGAAGCGCGCAGAGTTCTTAAACCCAGGTTG : AGGCTTGATCCAACTACAGGGGGTGCAGACCCAAGCAATTTTTTGAAAGCTATTTGTGATCTTGGGTTTACTATTGAGTCAAAG : GATTTCTCTAACAAAATGTTTGTGTTGTTCTACTTAAAGAAAAAG : GAAAAACAGAATTCAGTAGACAAAGAGATTAATTGGCCTGAGCTCAAGGCATGTATTTATAAACGGCGCTGAGCTTGGCCATAATATGGTCTAAGATTTTACTATAGTCCCTGTTCATTCTGGAGATGGGTTTAAACTTGTTGCTAGATCTCACTCATTGTTTCAAACCGTGCTCCCAAAAAAGACTGTCCACTGAAGTGAGGAATGGACGCTGTTGTGTTTCAAAGAATGCGCTTCACAATGATTCTAGGAGAAAAGTAGTCTATTCTTTGAATCTCATCTTTGAGAAGTAGGATTAGTATCGGCATTATTGTAGTATATTGGATTTTTGAAATTGTAGTTATTTTAATTGTTTGAAAATTATAATAACTAAATTAATATGATACTGATGTATTTATTTGATGAGATTCA</gDNA_template>
            <first_frame> T  E  E  R  K  G  S  *  E  I  F  H  S  G  R  K  R  S  F  *  G  L  R  R  E  S  V  Y  G  F  E  Y  G  D  L  K  D  *  E  T  F  V  F  S  R  *   : D  E  G  E  I  I  R  R  T  L  P  Y  A  *  *  K  T  L  H  L  L  :  R  R  *  G  A  *  L  F  Q  G  K  S  G  T  F  *  C   : G  Y  Q  E  Q  M  L  H  W  P  E  K  P  V  N  I  I  T  K  W  L  K  D  H  S  P  S  L  I  V  A  D  F  G  C   : G  D  A  R  L  A  R  S  V  K  N  K  V  W  S  L  D  L  V  A  H  D  P  S  V  I  A  C  D  M  S  N  :  S  P  R  Q  L  M  W  P  S  F  A  F  H  *  W  E  P  I  I  Q  A  F  F  R  K  R  A  E  F  L  N  P  G  * :   G  L  I  Q  L  Q  G  V  Q  T  Q  A  I  F  *  K  L  F  V  I  L  G  L  L  L  S  Q  R :   I  S  L  T  K  C  L  C  C  S  T  *  R  K  R :   K  N  R  I  Q  *  T  K  R  L  I  G  L  S  S  R  H  V  F  I  N  G  A  E  L  G  H  N  M  V  *  D  F  T  I  V  P  V  H  S  G  D  G  F  K  L  V  A  R  S  H  S  L  F  Q  T  V  L  P  K  K  T  V  H  *  S  E  E  W  T  L  L  C  F  K  E  C  A  S  Q  *  F  *  E  K  S  S  L  F  F  E  S  H  L  *  E  V  G  L  V  S  A  L  L  *  Y  I  G  F  L  K  L  *  L  F  *  L  F  E  N  Y  N  N  *  I  N  M  I  L  M  Y  L  F  D  E  I   </first_frame>
            <second_frame>  R  K  R  G  K  V  H  K  K  S  S  T  P  A  G  N  D  P  S  K  V  S  G  V  N  Q  S  M  V  S  N  T  A  I  S  K  T  K  K  P  S  S  F  L  D  K  :  M  K  A  R  L  S  G  G  H  F  R  M  L  N  E  K  L  Y  T  C  S :   G  D  E  A  L  N  Y  F  K  E  N  P  E  L  F  N  V  :  G  I  R  S  K  C  Y  I  G  Q  K  N  L  L  I  *  S  Q  N  G  *  R  I  I  A  L  H  *  L  L  Q  T  L  A  A  :  E  M  L  G  W  Q  E  V  *  R  T  K  C  G  L  W  I  L  S  H  M  I  L  Q  *  L  L  V  T  C  Q  I :   V  L  V  S  *  C  G  H  L  L  P  F  I  D  G  N  R  L  S  K  L  S  S  G  S  A  Q  S  S  *  T  Q  V   : E  A  *  S  N  Y  R  G  C  R  P  K  Q  F  F  E  S  Y  L  *  S  W  V  Y  Y  *  V  K   : G  F  L  *  Q  N  V  C  V  V  L  L  K  E  K   : G  K  T  E  F  S  R  Q  R  D  *  L  A  *  A  Q  G  M  Y  L  *  T  A  L  S  L  A  I  I  W  S  K  I  L  L  *  S  L  F  I  L  E  M  G  L  N  L  L  L  D  L  T  H  C  F  K  P  C  S  Q  K  R  L  S  T  E  V  R  N  G  R  C  C  V  S  K  N  A  L  H  N  D  S  R  R  K  V  V  Y  S  L  N  L  I  F  E  K  *  D  *  Y  R  H  Y  C  S  I  L  D  F  *  N  C  S  Y  F  N  C  L  K  I  I  I  T  K  L  I  *  Y  *  C  I  Y  L  M  R  F  </second_frame>
            <third_frame>   G  R  E  E  R  F  I  R  N  L  P  L  R  P  E  T  I  L  L  R  S  P  A  *  I  S  L  W  F  R  I  R  R  S  Q  R  L  R  N  L  R  L  F  S  I  R :   *  R  R  D  Y  Q  E  D  T  S  V  C  L  M  K  N  S  T  L  A   : Q  E  M  R  R  L  I  I  S  R  K  I  R  N  F  L  M  W :   V  S  G  A  N  V  T  L  A  R  K  T  C  *  Y  N  H  K  M  A  K  G  S  *  P  F  I  N  C  C  R  L  W  L  R :   R  C  S  A  G  K  K  C  E  E  Q  S  V  V  F  G  S  C  R  T  *  S  F  S  N  C  L  *  H  V  K   : *  S  S  S  V  D  V  A  I  F  C  L  S  L  M  G  T  D  Y  P  S  F  L  Q  E  A  R  R  V  L  K  P  R  L  :  R  L  D  P  T  T  G  G  A  D  P  S  N  F  L  K  A  I  C  D  L  G  F  T  I  E  S  K  :  D  F  S  N  K  M  F  V  L  F  Y  L  K  K  K  :  E  K  Q  N  S  V  D  K  E  I  N  W  P  E  L  K  A  C  I  Y  K  R  R  *  A  W  P  *  Y  G  L  R  F  Y  Y  S  P  C  S  F  W  R  W  V  *  T  C  C  *  I  S  L  I  V  S  N  R  A  P  K  K  D  C  P  L  K  *  G  M  D  A  V  V  F  Q  R  M  R  F  T  M  I  L  G  E  K  *  S  I  L  *  I  S  S  L  R  S  R  I  S  I  G  I  I  V  V  Y  W  I  F  E  I  V  V  I  L  I  V  *  K  L  *  *  L  N  *  Y  D  T  D  V  F  I  *  *  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46653" stop="46516"/>
                    <exon start="46430" stop="46369"/>
                    <exon start="46275" stop="46224"/>
                    <exon start="45186" stop="45139"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKRGKVHKKSSTPAGNDPSKVSGVNQSMVSNTAISKTKKPSSFLDKMKARLSGGHFRMLNEKLYTCSGDEALNYFKENPELFNVGIRSKCYIGQKNLLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44759" stop="44661"/>
                    <exon start="44545" stop="44462"/>
                    <exon start="44386" stop="44342"/>
                    <exon start="44256" stop="44185"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSVDVAIFCLSLMGTDYPSFLQEARRVLKPRLRLDPTTGGADPSNFLKAICDLGFTIESKDFSNKMFVLFYLKKKEKQNSVDKEINWPELKACIYKRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46227" stop="46224"/>
                    <exon start="45186" stop="45082"/>
                    <exon start="44990" stop="44896"/>
                    <exon start="44761" stop="44720"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGYQEQMLHWPEKPVNIITKWLKDHSPSLIVADFGCGDARLARSVKNKVWSLDLVAHDPSVIACDMSNSPRQLMWPSFAFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="48295" PGL_stop="47936"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48295" e_stop="47936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="48295" e_stop="47936" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48295" stop="47936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548779" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAATAGACCGAAGTACAACATGACTCACCCTTTGAGTCTTTCAAAATAATCAAAATAACATTCAAACTCATGCTATTAAAATTTTACACTTCTTCAATTTAAGAAGTTTTATATAGCATGTCATATTCAACCAATAATAGTATATGTCTTCGGTTCGTGATAATTGTTAGTGACTGAATACTATTTTTATTCTAAATCATAAAAATATTCTAGAAAATACATACCTGATTTTATGCATATAATAATACCTTGATTCTCATAACAAGATCAACCAAAACATGAGTTAAAGAAAAACTAAAACTCAATCTTAATTGGCTAGAGACTCGTGCTGATAACGTGTTATAAAATCAAGCTCATG</gDNA_template>
            <first_frame> Y  N  R  P  K  Y  N  M  T  H  P  L  S  L  S  K  *  S  K  *  H  S  N  S  C  Y  *  N  F  T  L  L  Q  F  K  K  F  Y  I  A  C  H  I  Q  P  I  I  V  Y  V  F  G  S  *  *  L  L  V  T  E  Y  Y  F  Y  S  K  S  *  K  Y  S  R  K  Y  I  P  D  F  M  H  I  I  I  P  *  F  S  *  Q  D  Q  P  K  H  E  L  K  K  N  *  N  S  I  L  I  G  *  R  L  V  L  I  T  C  Y  K  I  K  L  M </first_frame>
            <second_frame>  I  I  D  R  S  T  T  *  L  T  L  *  V  F  Q  N  N  Q  N  N  I  Q  T  H  A  I  K  I  L  H  F  F  N  L  R  S  F  I  *  H  V  I  F  N  Q  *  *  Y  M  S  S  V  R  D  N  C  *  *  L  N  T  I  F  I  L  N  H  K  N  I  L  E  N  T  Y  L  I  L  C  I  *  *  Y  L  D  S  H  N  K  I  N  Q  N  M  S  *  R  K  T  K  T  Q  S  *  L  A  R  D  S  C  *  *  R  V  I  K  S  S  S   </second_frame>
            <third_frame>   *  *  T  E  V  Q  H  D  S  P  F  E  S  F  K  I  I  K  I  T  F  K  L  M  L  L  K  F  Y  T  S  S  I  *  E  V  L  Y  S  M  S  Y  S  T  N  N  S  I  C  L  R  F  V  I  I  V  S  D  *  I  L  F  L  F  *  I  I  K  I  F  *  K  I  H  T  *  F  Y  A  Y  N  N  T  L  I  L  I  T  R  S  T  K  T  *  V  K  E  K  L  K  L  N  L  N  W  L  E  T  R  A  D  N  V  L  *  N  Q  A  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0064B17.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="47947" PGL_stop="48335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47947" e_stop="48335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="47947" e_stop="48335" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47947" stop="48335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAGTTTTTCTTTAACTCATGTTTTGGTTGATCTTGTTATGAGAATCAAGGTATTATTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAAATAGTATTCAGTCACTAACAATTATCACGAACCGAAGACATATACTATTATTGGTTGAATATGACATGCTATATAAAACTTCTTAAATTGAAGAAGTGTAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTATTTTGAAAGACTCAAAGGGTGAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGACGATGGATTCAAGTTTCATCG</gDNA_template>
            <first_frame> F  Y  N  T  L  S  A  R  V  S  S  Q  L  R  L  S  F  S  F  S  L  T  H  V  L  V  D  L  V  M  R  I  K  V  L  L  Y  A  *  N  Q  V  C  I  F  *  N  I  F  M  I  *  N  K  N  S  I  Q  S  L  T  I  I  T  N  R  R  H  I  L  L  L  V  E  Y  D  M  L  Y  K  T  S  *  I  E  E  V  *  N  F  N  S  M  S  L  N  V  I  L  I  I  L  K  D  S  K  G  E  S  C  C  T  S  V  Y  Y  T  V  G  *  G  *  D  D  G  F  K  F  H   </first_frame>
            <second_frame>  F  I  T  R  Y  Q  H  E  S  L  A  N  *  D  *  V  L  V  F  L  *  L  M  F  W  L  I  L  L  *  E  S  R  Y  Y  Y  M  H  K  I  R  Y  V  F  S  R  I  F  L  *  F  R  I  K  I  V  F  S  H  *  Q  L  S  R  T  E  D  I  Y  Y  Y  W  L  N  M  T  C  Y  I  K  L  L  K  L  K  K  C  K  I  L  I  A  *  V  *  M  L  F  *  L  F  *  K  T  Q  R  V  S  H  V  V  L  R  S  I  I  P  L  V  K  G  K  T  M  D  S  S  F  I  </second_frame>
            <third_frame>   L  *  H  V  I  S  T  S  L  *  P  I  K  I  E  F  *  F  F  F  N  S  C  F  G  *  S  C  Y  E  N  Q  G  I  I  I  C  I  K  S  G  M  Y  F  L  E  Y  F  Y  D  L  E  *  K  *  Y  S  V  T  N  N  Y  H  E  P  K  T  Y  T  I  I  G  *  I  *  H  A  I  *  N  F  L  N  *  R  S  V  K  F  *  *  H  E  F  E  C  Y  F  D  Y  F  E  R  L  K  G  *  V  M  L  Y  F  G  L  L  Y  R  W  L  R  V  R  R  W  I  Q  V  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0064B17.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="48571" PGL_stop="49213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48571" e_stop="49213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="48571" e_stop="49213" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48571" stop="49213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48843" stop="49196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204533" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATGAAAAGTCTTGAAATCCGTCCTATTGAATTTGCTCCTTCCTTGAAAAAAATGTGGTAACAACATATGATAATTTTGAAATCGCATGTTCACTTGCTCCATTCTATCGTATGAATGTGGTAAACTAAATAGTTAGTCTGAAAGATGACAAATGATTAACGATATGAAAAAAGGCATGAAGGGACAGAATTATAATAGTCATCATTGTGGTAATTATAAAAGGAAGAACACTATGGGTTCTCCAAATAGTCCTTCGAAATGTGAAGGCAGTTTTCATTATCAAAATGCTATGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAATTTATAAATCTTCTATCATGATACAAGAAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATGTGTTTATAATGCAAATTTATAAAGTACATATAAATAATTAGTTCAATCCTTGAAGAGAATGTGACTTGTAATAAGTATCGTGAATGCTCGGCCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATACGTCACAACTCACCTCTATAGAAGGTTTGAGAAATGATACA</gDNA_template>
            <first_frame> F  D  E  K  S  *  N  P  S  Y  *  I  C  S  F  L  E  K  N  V  V  T  T  Y  D  N  F  E  I  A  C  S  L  A  P  F  Y  R  M  N  V  V  N  *  I  V  S  L  K  D  D  K  *  L  T  I  *  K  K  A  *  R  D  R  I  I  I  V  I  I  V  V  I  I  K  G  R  T  L  W  V  L  Q  I  V  L  R  N  V  K  A  V  F  I  I  K  M  L  *  K  V  I  R  L  V  N  V  V  N  P  I  I  *  Q  I  Y  K  S  S  I  M  I  Q  E  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  C  Y  G  N  M  M  N  F  K  A  M  T  M  C  L  *  C  K  F  I  K  Y  I  *  I  I  S  S  I  L  E  E  N  V  T  C  N  K  Y  R  E  C  S  A  I  L  *  E  N  G  S  R  C  D  K  I  I  M  G  W  I  Y  V  T  T  H  L  Y  R  R  F  E  K  *  Y  </first_frame>
            <second_frame>  L  M  K  S  L  E  I  R  P  I  E  F  A  P  S  L  K  K  M  W  *  Q  H  M  I  I  L  K  S  H  V  H  L  L  H  S  I  V  *  M  W  *  T  K  *  L  V  *  K  M  T  N  D  *  R  Y  E  K  R  H  E  G  T  E  L  *  *  S  S  L  W  *  L  *  K  E  E  H  Y  G  F  S  K  *  S  F  E  M  *  R  Q  F  S  L  S  K  C  Y  E  R  S  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  L  L  S  *  Y  K  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  V  M  E  I  *  *  I  L  K  P  *  Q  C  V  Y  N  A  N  L  *  S  T  Y  K  *  L  V  Q  S  L  K  R  M  *  L  V  I  S  I  V  N  A  R  P  F  Y  K  R  M  G  P  D  V  I  K  S  L  W  V  G  Y  T  S  Q  L  T  S  I  E  G  L  R  N  D  T </second_frame>
            <third_frame>   *  *  K  V  L  K  S  V  L  L  N  L  L  L  P  *  K  K  C  G  N  N  I  *  *  F  *  N  R  M  F  T  C  S  I  L  S  Y  E  C  G  K  L  N  S  *  S  E  R  *  Q  M  I  N  D  M  K  K  G  M  K  G  Q  N  Y  N  S  H  H  C  G  N  Y  K  R  K  N  T  M  G  S  P  N  S  P  S  K  C  E  G  S  F  H  Y  Q  N  A  M  K  G  H  *  T  C  E  C  C  Q  P  N  N  L  T  N  L  *  I  F  Y  H  D  T  R  R  *  S  D  G  T  L  N  L  S  K  *  C  *  G  V  L  W  K  Y  D  E  F  *  S  H  D  N  V  F  I  M  Q  I  Y  K  V  H  I  N  N  *  F  N  P  *  R  E  C  D  L  *  *  V  S  *  M  L  G  H  S  I  R  E  W  V  Q  M  *  *  N  H  Y  G  L  D  I  R  H  N  S  P  L  *  K  V  *  E  M  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0064B17.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="51316" PGL_stop="50641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51316" e_stop="50641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="51316" e_stop="50641" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51316" stop="50641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51316" stop="50914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTCTCTAGCTAGACATTACAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATATCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATTTTACGGTTATATTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTCTTCACACTATATGACAAATTTGAATTCAAGATCCTCATCATAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGGCGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGAACATATTGATCATTTGCTCTTTCCTTCTTCAAGGAATTTTATATTTGGAATCAATTTGTCTATTACGCTTCCGGCGTATCATAGGCTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  D  F  H  I  T  F  I  L  *  L  D  I  T  I  I  H  Y  M  H  S  S  F  S  Y  V  A  R  S  K  Q  T  S  F  H  P  P  K  E  K  T  S  P  L  I  S  G  F  L  R  *  T  F  M  P  Q  G  T  N  R  I  *  Y  F  T  V  I  L  S  H  N  N  L  F  V  P  H  *  H  Y  T  L  I  Y  G  L  P  V  Q  N  V  T  F  L  S  E  T  K  Y  T  *  I  V  H  F  T  W  P  T  I  Y  L  F  T  L  Y  D  K  F  E  F  K  I  L  I  I  I  Y  I  I  E  R  Y  L  I  S  K  I  P  S  A  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  D  F  M  K  C  Y  V  N  V  L  L  Y  S  T  C  L  I  I  M  N  I  L  I  I  C  S  F  L  L  Q  G  I  L  Y  L  E  S  I  C  L  L  R  F  R  R  I  I  G  S  </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  F  S  S  *  T  L  Q  L  F  I  T  C  I  Q  V  F  H  M  L  P  D  Q  N  K  P  H  F  I  H  Q  R  R  K  H  L  H  *  Y  Q  D  F  C  D  K  P  L  C  P  K  A  Q  T  V  F  D  I  L  R  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  P  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  L  E  L  C  I  L  L  G  Q  P  F  I  S  S  H  Y  M  T  N  L  N  S  R  S  S  S  *  F  I  S  L  S  A  T  S  Y  Q  R  Y  R  R  R  L  F  D  I  D  S  N  K  T  *  L  I  E  I  S  S  F  F  I  I  S  G  T  *  T  F  F  K  I  L  *  S  V  M  S  M  C  S  F  I  A  L  A  S  L  S  *  T  Y  *  S  F  A  L  S  F  F  K  E  F  Y  I  W  N  Q  F  V  Y  Y  A  S  G  V  S  *  A  L </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  L  H  S  L  A  R  H  Y  N  Y  S  L  H  A  F  K  F  F  I  C  C  Q  I  K  T  N  L  I  S  S  T  K  G  E  N  I  S  T  N  I  R  I  F  A  I  N  L  Y  A  P  R  H  K  P  Y  L  I  F  Y  G  Y  I  I  A  *  *  F  I  C  T  P  L  T  L  Y  L  D  L  W  T  T  S  P  K  C  H  F  S  K  *  N  K  I  Y  L  N  C  A  F  Y  L  A  N  H  L  S  L  H  T  I  *  Q  I  *  I  Q  D  P  H  H  N  L  Y  H  *  A  L  P  H  I  K  D  T  V  G  G  Y  L  I  S  I  P  T  R  H  N  L  S  R  S  L  H  F  S  L  F  Q  V  P  E  P  F  S  R  F  Y  E  V  L  C  Q  C  A  P  L  *  H  L  P  H  Y  H  E  H  I  D  H  L  L  F  P  S  S  R  N  F  I  F  G  I  N  L  S  I  T  L  P  A  Y  H  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51314" stop="51084"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPRLFQGFSYNLHSLARHYNYSLHAFKFFICCQIKTNLISSTKGENISTNIRIFAINLYAPRHKPYLIFYGYIIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50863" stop="50642"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFQQDITYRDLFIFHYFRYLNLFQDFMKCYVNVLLYSTCLIIMNILIICSFLLQGILYLESICLLRFRRIIGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="50922" PGL_stop="51885"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50922" e_stop="51885"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="50922" e_stop="51885" e_length="964"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50922" stop="51599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50923" stop="51477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50927" stop="51380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50971" stop="51553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51329" stop="51737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51405" stop="51885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAGGATCTTGAATTCAAATTTGTCATATAGTGTGAAGAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAATATAACCGTAAAATATCAAATACGGTTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGATATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGAGAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGCTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCAACAGATTGATAATTTGACAAATGAAATATTTGTTTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTAATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCAAAGGACCATAGTTATGGGTTTATTCTATTCCGAGGAATCCAACACAAAATTGATTGGTTACGCAAATGCAGAATATTTA</gDNA_template>
            <first_frame> M  R  I  L  N  S  N  L  S  Y  S  V  K  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  V  *  C  Q  W  G  T  N  K  L  L  C  D  N  I  T  V  K  Y  Q  I  R  F  V  P  W  G  I  K  V  Y  R  K  N  P  D  I  S  G  D  V  F  S  F  G  G  *  N  E  V  C  F  D  L  A  T  Y  E  K  L  E  C  M  *  *  I  I  V  M  S  S  *  R  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  A  *  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  G  Q  G  R  K  R  V  Q  K  N  D  P  N  C  P  C  I  F  M  K  R  F  W  *  D  K  I  L  S  *  P  T  D  *  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  V  L  M  Q  F  N  M  D  K  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  E  E  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  Y  S  R  Y  L  F  C  S  K  F  T  G  K  I  Q  F  L  P  D  K  R  T  L  K  W  C  *  A  H  D  *  I  S  S  K  D  H  S  Y  G  F  I  L  F  R  G  I  Q  H  K  I  D  W  L  R  K  C  R  I  F  </first_frame>
            <second_frame>  *  G  S  *  I  Q  I  C  H  I  V  *  R  D  K  W  L  A  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  I  *  P  *  N  I  K  Y  G  L  C  L  G  A  *  R  F  I  A  K  I  L  I  L  V  E  M  F  S  P  L  V  D  E  M  R  F  V  L  I  W  Q  H  M  K  N  L  N  A  C  N  E  *  L  *  C  L  A  R  E  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  L  E  R  N  F  F  N  K  A  S  R  I  L  I  W  I  E  M  V  K  E  E  K  G  Y  K  R  M  T  L  I  V  L  V  F  L  *  K  G  F  G  K  T  K  F  C  L  D  Q  Q  I  D  N  L  T  N  E  I  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  L  I  W  I  N  H  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  Q  F  D  L  K  R  R  M  K  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  I  P  D  I  C  F  A  V  N  L  L  A  R  F  S  F  S  P  I  K  G  H  *  N  G  V  E  H  M  I  E  Y  P  Q  R  T  I  V  M  G  L  F  Y  S  E  E  S  N  T  K  L  I  G  Y  A  N  A  E  Y  L </second_frame>
            <third_frame>   E  D  L  E  F  K  F  V  I  *  C  E  E  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  V  C  A  L  G  H  K  G  L  S  Q  K  S  *  Y  *  W  R  C  F  L  L  W  W  M  K  *  G  L  F  *  S  G  N  I  *  K  T  *  M  H  V  M  N  N  C  N  V  *  L  E  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  S  I  K  L  Q  E  S  L  Y  G  L  K  W  S  R  K  K  K  G  T  K  E  *  P  *  L  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  V  L  T  N  R  L  I  I  *  Q  M  K  Y  L  F  N  S  A  H  T  L  K  S  F  D  A  I  *  Y  G  *  I  T  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  S  L  I  S  K  E  G  *  R  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  L  F  Q  I  F  V  L  Q  *  I  Y  W  Q  D  S  V  S  P  R  *  K  D  I  E  M  V  L  S  T  *  L  N  I  L  K  G  P  *  L  W  V  Y  S  I  P  R  N  P  T  Q  N  *  L  V  T  Q  M  Q  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0064B17.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="61738" PGL_stop="55475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61738" e_stop="61411"/>
            <exon e_start="61176" e_stop="61091"/>
            <exon e_start="60754" e_stop="60449"/>
            <exon e_start="59967" e_stop="59884"/>
            <exon e_start="56123" e_stop="55475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61738" e_stop="61411" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.969">
            <gDNA_intron_boundary i_start="61410" i_stop="61177" i_length="234"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61176" e_stop="61091" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.915" acc_prob="0.987">
            <gDNA_intron_boundary i_start="61090" i_stop="60755" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60754" e_stop="60449" e_length="306"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60448" i_stop="59968" i_length="481"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59967" e_stop="59884" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="59883" i_stop="56124" i_length="3760"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="56123" e_stop="55475" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61738" stop="61411"/>
              <exon start="61176" stop="61091"/>
              <exon start="60754" stop="60638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61738" stop="61423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61717" stop="61411"/>
              <exon start="61176" stop="61091"/>
              <exon start="60754" stop="60449"/>
              <exon start="59967" stop="59884"/>
              <exon start="56123" stop="55569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61717" stop="61411"/>
              <exon start="61176" stop="61091"/>
              <exon start="60754" stop="60627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61716" stop="61411"/>
              <exon start="61176" stop="61091"/>
              <exon start="60754" stop="60449"/>
              <exon start="59967" stop="59926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61581" stop="61411"/>
              <exon start="61176" stop="61091"/>
              <exon start="60754" stop="60612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61484" stop="61411"/>
              <exon start="61176" stop="61091"/>
              <exon start="60754" stop="60449"/>
              <exon start="59967" stop="59884"/>
              <exon start="56123" stop="55830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61429" stop="61411"/>
              <exon start="61176" stop="61091"/>
              <exon start="60754" stop="60449"/>
              <exon start="59967" stop="59884"/>
              <exon start="56123" stop="55872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60580" stop="60449"/>
              <exon start="59967" stop="59884"/>
              <exon start="56123" stop="55565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60510" stop="60449"/>
              <exon start="59967" stop="59884"/>
              <exon start="56123" stop="55553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462205" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59937" stop="59884"/>
              <exon start="56123" stop="55561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59937" stop="59884"/>
              <exon start="56123" stop="55561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59937" stop="59884"/>
              <exon start="56123" stop="55565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59937" stop="59884"/>
              <exon start="56123" stop="55626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55843" stop="55475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55806" stop="55475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTGCTTGCACTTCTCTCCAAAACCTTTCACTCGCTTTTCTGCACGAGCCCTAGTTAACGCCATGGCCGGAACACCGGAGAACTTCTCCACCGACGCTACTGCCGACGCTGCCAACGCCGACGAGGACGTCAAGTTTGGGTTTCAGCGTTCGGAGATGTACCAGAGTAAACTTGCAGGTACTACGACCTCCTATGATCGTCATCTGTTCCTCTGTTACAAGTCTCACGAGACTTGGCCTGCTCGCCTTGAAGCTTCTGACTCCGATCTGCTTCCAAAGTCACTCTCTGCTGCTCTTAAAGCTCGCAAGGATGACATCAAAATCAAG : ACTCTTTTGACAATATGCGAAGTACGTGATGACATGGAAGTATCAGAAGGAGATATTCTGATTTTTCCTGAAATGATCAAATACAG : GGATTTGAAGGAGTCAGATGTGGATGCATTTGTTGATGATGTGCTTGTCAATGGCAATACTTGGAGCTCTGGATTGCAGGAGTCGCTGAGTGGTTCTTATGTGTTTGTCTGTGCCCACAATCTTCGTGATCGAAGATGTGGTGTTTGTGGACCTATTCTAATTGAGGAATTTAGCAAGCTCATTGAGTCCAAGAGCTTGAAAGACAAAGTTCGTGTGACAGCTTGTTCTCATATTGGTGGCCACAAGTATGCTGGTAATGTTATAATCTTCAGCTCAGGAAAGGACGGGAATATTGTTGGCCACTG : GTATGGCTATGTTACGCCAAGTGATGTACCTGCTTTGCTTGATGAGCATATTGGAGAGGGAAAAGTCATTGAACGACTTTGGAG : GGGCCAAATGGGACAATATGAGAAGGTAACTGATAAAGTGGATGAACAGAAGGTTCCTGAAGTAACCAATGAAGAAAAGAAGTCTCTTGAAAATGGAAAAAGCCAGGAGAGTAGTGTAACTAGTTTCAGCTGTTGCCAAGGTGCTGCGGGAGTTTCTTGTTGTAGAGATGCAAGTGCTGAGCAGAAAGAGAACAAGAAAGGGCAGGGAACAGTTTCAAACTGGTTCGGCAAATGGGAGCAGCGTGAAATACTCGCAGCTGTAGGTGTGGTTGGAGCAGTGGCTGTTGTCGCTGTGGCTTATGGCTTTTACAAGAAGTCACGGTGAAGCATGTTAACTTGGGACAAACTTTGTGCTCAAGAGTTTTCGGGTATCTAGGTTTTGTAGAAAGGTAATAATGTTCGAGATAATCTCGGACACTGAAAATGCATACATATTTGGTATATTTAGAGAAAATTAAATGCAATGTGTAATTCGACTATGGAGAGCAGCTCCTTTGCTCGTTCCCAGTAAGAACTAGAAGGGGTGATAAATATAAAGTGCCAACTAAGTGCTACATGTAGAATGATAGTTTTTACTTCTCTTGCTTGGGATTGAGGGTGATTTTATGTGATGTGTTATGGGCAGATTTGCTTTTTTCTTCTTGTGAAA</gDNA_template>
            <first_frame> I  L  L  A  L  L  S  K  T  F  H  S  L  F  C  T  S  P  S  *  R  H  G  R  N  T  G  E  L  L  H  R  R  Y  C  R  R  C  Q  R  R  R  G  R  Q  V  W  V  S  A  F  G  D  V  P  E  *  T  C  R  Y  Y  D  L  L  *  S  S  S  V  P  L  L  Q  V  S  R  D  L  A  C  S  P  *  S  F  *  L  R  S  A  S  K  V  T  L  C  C  S  *  S  S  Q  G  *  H  Q  N  Q   : D  S  F  D  N  M  R  S  T  *  *  H  G  S  I  R  R  R  Y  S  D  F  S  *  N  D  Q  I  Q  :  G  F  E  G  V  R  C  G  C  I  C  *  *  C  A  C  Q  W  Q  Y  L  E  L  W  I  A  G  V  A  E  W  F  L  C  V  C  L  C  P  Q  S  S  *  S  K  M  W  C  L  W  T  Y  S  N  *  G  I  *  Q  A  H  *  V  Q  E  L  E  R  Q  S  S  C  D  S  L  F  S  Y  W  W  P  Q  V  C  W  *  C  Y  N  L  Q  L  R  K  G  R  E  Y  C  W  P  L  :  V  W  L  C  Y  A  K  *  C  T  C  F  A  *  *  A  Y  W  R  G  K  S  H  *  T  T  L  E  :  G  P  N  G  T  I  *  E  G  N  *  *  S  G  *  T  E  G  S  *  S  N  Q  *  R  K  E  V  S  *  K  W  K  K  P  G  E  *  C  N  *  F  Q  L  L  P  R  C  C  G  S  F  L  L  *  R  C  K  C  *  A  E  R  E  Q  E  R  A  G  N  S  F  K  L  V  R  Q  M  G  A  A  *  N  T  R  S  C  R  C  G  W  S  S  G  C  C  R  C  G  L  W  L  L  Q  E  V  T  V  K  H  V  N  L  G  Q  T  L  C  S  R  V  F  G  Y  L  G  F  V  E  R  *  *  C  S  R  *  S  R  T  L  K  M  H  T  Y  L  V  Y  L  E  K  I  K  C  N  V  *  F  D  Y  G  E  Q  L  L  C  S  F  P  V  R  T  R  R  G  D  K  Y  K  V  P  T  K  C  Y  M  *  N  D  S  F  Y  F  S  C  L  G  L  R  V  I  L  C  D  V  L  W  A  D  L  L  F  S  S  C  E  </first_frame>
            <second_frame>  F  C  L  H  F  S  P  K  P  F  T  R  F  S  A  R  A  L  V  N  A  M  A  G  T  P  E  N  F  S  T  D  A  T  A  D  A  A  N  A  D  E  D  V  K  F  G  F  Q  R  S  E  M  Y  Q  S  K  L  A  G  T  T  T  S  Y  D  R  H  L  F  L  C  Y  K  S  H  E  T  W  P  A  R  L  E  A  S  D  S  D  L  L  P  K  S  L  S  A  A  L  K  A  R  K  D  D  I  K  I  K  :  T  L  L  T  I  C  E  V  R  D  D  M  E  V  S  E  G  D  I  L  I  F  P  E  M  I  K  Y  R :   D  L  K  E  S  D  V  D  A  F  V  D  D  V  L  V  N  G  N  T  W  S  S  G  L  Q  E  S  L  S  G  S  Y  V  F  V  C  A  H  N  L  R  D  R  R  C  G  V  C  G  P  I  L  I  E  E  F  S  K  L  I  E  S  K  S  L  K  D  K  V  R  V  T  A  C  S  H  I  G  G  H  K  Y  A  G  N  V  I  I  F  S  S  G  K  D  G  N  I  V  G  H  W :   Y  G  Y  V  T  P  S  D  V  P  A  L  L  D  E  H  I  G  E  G  K  V  I  E  R  L  W  R :   G  Q  M  G  Q  Y  E  K  V  T  D  K  V  D  E  Q  K  V  P  E  V  T  N  E  E  K  K  S  L  E  N  G  K  S  Q  E  S  S  V  T  S  F  S  C  C  Q  G  A  A  G  V  S  C  C  R  D  A  S  A  E  Q  K  E  N  K  K  G  Q  G  T  V  S  N  W  F  G  K  W  E  Q  R  E  I  L  A  A  V  G  V  V  G  A  V  A  V  V  A  V  A  Y  G  F  Y  K  K  S  R  *  S  M  L  T  W  D  K  L  C  A  Q  E  F  S  G  I  *  V  L  *  K  G  N  N  V  R  D  N  L  G  H  *  K  C  I  H  I  W  Y  I  *  R  K  L  N  A  M  C  N  S  T  M  E  S  S  S  F  A  R  S  Q  *  E  L  E  G  V  I  N  I  K  C  Q  L  S  A  T  C  R  M  I  V  F  T  S  L  A  W  D  *  G  *  F  Y  V  M  C  Y  G  Q  I  C  F  F  L  L  V  K </second_frame>
            <third_frame>   F  A  C  T  S  L  Q  N  L  S  L  A  F  L  H  E  P  *  L  T  P  W  P  E  H  R  R  T  S  P  P  T  L  L  P  T  L  P  T  P  T  R  T  S  S  L  G  F  S  V  R  R  C  T  R  V  N  L  Q  V  L  R  P  P  M  I  V  I  C  S  S  V  T  S  L  T  R  L  G  L  L  A  L  K  L  L  T  P  I  C  F  Q  S  H  S  L  L  L  L  K  L  A  R  M  T  S  K  S  R :   L  F  *  Q  Y  A  K  Y  V  M  T  W  K  Y  Q  K  E  I  F  *  F  F  L  K  *  S  N  T   : G  I  *  R  S  Q  M  W  M  H  L  L  M  M  C  L  S  M  A  I  L  G  A  L  D  C  R  S  R  *  V  V  L  M  C  L  S  V  P  T  I  F  V  I  E  D  V  V  F  V  D  L  F  *  L  R  N  L  A  S  S  L  S  P  R  A  *  K  T  K  F  V  *  Q  L  V  L  I  L  V  A  T  S  M  L  V  M  L  *  S  S  A  Q  E  R  T  G  I  L  L  A  T   : G  M  A  M  L  R  Q  V  M  Y  L  L  C  L  M  S  I  L  E  R  E  K  S  L  N  D  F  G   : G  A  K  W  D  N  M  R  R  *  L  I  K  W  M  N  R  R  F  L  K  *  P  M  K  K  R  S  L  L  K  M  E  K  A  R  R  V  V  *  L  V  S  A  V  A  K  V  L  R  E  F  L  V  V  E  M  Q  V  L  S  R  K  R  T  R  K  G  R  E  Q  F  Q  T  G  S  A  N  G  S  S  V  K  Y  S  Q  L  *  V  W  L  E  Q  W  L  L  S  L  W  L  M  A  F  T  R  S  H  G  E  A  C  *  L  G  T  N  F  V  L  K  S  F  R  V  S  R  F  C  R  K  V  I  M  F  E  I  I  S  D  T  E  N  A  Y  I  F  G  I  F  R  E  N  *  M  Q  C  V  I  R  L  W  R  A  A  P  L  L  V  P  S  K  N  *  K  G  *  *  I  *  S  A  N  *  V  L  H  V  E  *  *  F  L  L  L  L  L  G  I  E  G  D  F  M  *  C  V  M  G  R  F  A  F  F  F  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61737" stop="61411"/>
                    <exon start="61176" stop="61091"/>
                    <exon start="60754" stop="60449"/>
                    <exon start="59967" stop="59884"/>
                    <exon start="56123" stop="55799"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCLHFSPKPFTRFSARALVNAMAGTPENFSTDATADAANADEDVKFGFQRSEMYQSKLAGTTTSYDRHLFLCYKSHETWPARLEASDSDLLPKSLSAALKARKDDIKIKTLLTICEVRDDMEVSEGDILIFPEMIKYRDLKESDVDAFVDDVLVNGNTWSSGLQESLSGSYVFVCAHNLRDRRCGVCGPILIEEFSKLIESKSLKDKVRVTACSHIGGHKYAGNVIIFSSGKDGNIVGHWYGYVTPSDVPALLDEHIGEGKVIERLWRGQMGQYEKVTDKVDEQKVPEVTNEEKKSLENGKSQESSVTSFSCCQGAAGVSCCRDASAEQKENKKGQGTVSNWFGKWEQREILAAVGVVGAVAVVAVAYGFYKKSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="66086" PGL_stop="62441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66086" e_stop="65782"/>
            <exon e_start="65355" e_stop="64319"/>
            <exon e_start="63602" e_stop="62441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.257" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="66086" e_stop="65782" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.257">
            <gDNA_intron_boundary i_start="65781" i_stop="65356" i_length="426"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65355" e_stop="64319" e_length="1037"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64318" i_stop="63603" i_length="716"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="63602" e_stop="62441" e_length="1162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66086" stop="65782"/>
              <exon start="65355" stop="64319"/>
              <exon start="63602" stop="62513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66011" stop="65782"/>
              <exon start="65355" stop="64950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65941" stop="65782"/>
              <exon start="65355" stop="65081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64381" stop="64319"/>
              <exon start="63602" stop="63140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63155" stop="62467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63038" stop="62441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGATGAAGGAGAAAACAGAGTAAAATATAGAAAGAGAAAGAGAGAGAAAATCTTATGTATCAATTTCTTGACTAAGCTCTATTCTATTTCATTTGTTTGTTGTGAGTTTTGTTTGATTGATTCATTTACTCTGTTTGTATCCAAATATAATAATTAGTCACTCACTCTTTTTATTGTTACGATCGGATCTGAAAAAGGGAGAGGACCCAGAAAGAAAAAGGTGCAAAGCTGTTACCCTTTTTAAGTGGAAAGGGTCTCAATAATCATGGCACATCATTCATTTTTCTCCATTTGATAATCAG : TGTTTATACCAAAAAATTACAATGGAGTCTCTTGTTGATGGAATCAGTTCCTTGCCGAACGTTCACAATTCATTCGCTGCGGTTGAGTGCAATACATCTTTGGCCTCCAAGATAAGTCATCCTCCTTTGATGAAACAATCCGAAAACAAAGAGGCATCTATCTCATATCCAATAGCGATGGACCTTGGTTCCACCGTAGCTCATACTCAAACTGGATCAGTGACTGGTTCAAAGCATTTTAAAGCAAATGAAGATACTGTAAATCAATCAGCAGAAGGTTGTTCAGGAGAACAGGTTTTGGCTTTGGAAACTGAATCATCTATCAAGGATTTACATCATGTTTCGAAAAATGGTACTTCAAACGATGATTTGAATGCGACTGCCAAAGACTCAGGAATCACCTACTGTCCTAGTCCTCAAAACAGTTTTTATTCTGCTACACAGTACACAGAAGCCAAACAAAGTTTTTCCAACACAGAAGTCAGTGAATGCGCTAGCAGCACTGTGGACAAGTCTGGTGAAAGTGGTGATGTTAGCAACTCTTGTGATCTTGTTGAGAGCAGAAAAACAAGCTTCTACAGAGGCAGCACAGGTAGTGACGTTAGTGATGAAAGCAGCTCTAGTAGTTTCAATAGCACAGTATATAAACCACATAAGGCAAATGATACAAGGTGGGATGCAATACAAGTTATTAGAGCCCGTGAGGGAACATTGGGTTTTAACCACTTTAGACTGTTGAAGAGATTGGGATGTGGTGATATAGGAAGTGTTTTTCTAGCAGAGTTGATTGGCACAAGATGTTTCTTTGCCATGAAAGTGATGGACAAGGCAGCTCTAGAAAGTCGCAAGAAACTCGTGAGAGCTCAAACGGAAAGAGAGATACTGCAGTCTCTGGATCATCCCTTTCTACCAACACTGTATTCGCACTTTGAAACAGATAAATTTTCGTGCTTGGTGATGGAATTCTGCCCTGGTGGAGATTTGCATGCACTTAGGCAAAAGCAGCCAGGAAAATTCTTCCCGGAGCATGCTGCCAG : GTTTTACGTGGCTGAAGTCCTTCTTGCTCTAGAGTACTTGCACATGCTTGGAATCATTTACAGAGACCTTAAACCAGAGAATGTTTTGGTTCGAGAAGATGGCCATATAATGCTTTCTGATTTTGACCTCTCCTTGAGGTGTGCCGTGAGCCCAACTCTAGTTAGATCTTCAAATTCAAGCTTAGAGTGCAAGAGCTCATCATACTGTGTCCAGCCTGCTTGTATTGAGCCATCTTGTGTCGTACAGCCTGCATGTATACAACCTTCATGTTTTACACCACGTTTTCTAAGCAAGAACAAGAAAGAAAAGAAGTCCAAACAAAAGACAGAAACATATAACCAAGTGAACCGGCCTCTTCCAGAACTCCTTGCTGAACCAACGAGTGCTCGATCAATGTCTTTTGTGGGAACACATGAGTACCTAGCTCCAGAAATTATAAAGGGTGAAGGACACGGCAGTGCTGTAGATTGGTGGACATTTGGGATCTTTCTCTATGAACTCTTGTTTGGACAAACTCCTTTCAAAGGTGCAGGCAACAGGGCAACATTGTTTAACGTTGTTGGACAGCCCTTGAAATTTCCTGAAACACCTAGTGTTAGTTTTGCAGCAAGGGACTTGATAAGAGGCCTACTTGTGAAGGAGCCACAACATCGCCTTGCATATAGGCGAGGGGCTACTGAAATAAAACAACATCCTTTCTTCCAGAATGTGAACTGGGCACTTATAAGATGTACCAGTCCTCCAGATGTACCAAAGCCGTCCTCCATGACATATGATATGCCCCGAACACCACCAGCAGGAAAGGCCCCCGGACTTGATGTGAAGCCTTCAGGTAATTATTTTGAGATTGATTTCTTCTGAAGAATTCTTTTCCTTGGCAGCAATGCCCCCATTGCCGTTCTACGAAGAGCTCAACGTTGAGGAAGACACAGTTTTTGTGTTCCTTTATGCTAATGTAAAGTGCATACTCTGTTGAAATGCAAGATGCATAGGAATTAGATGGTGAAGGCCATTTTTCTTTGTATAAGTATGTTGTTGATATTAATGAAGAAGGCCTTGATGTGGCTATAAAGCTAGGCATTGCTGGATGTGATGTTTTAAAATTTTCAATTGAAGAATCAAAAGTTGATGTGCCATAATCCAGTCATTTAAAAAGTTGAT</gDNA_template>
            <first_frame> *  R  *  R  R  K  Q  S  K  I  *  K  E  K  E  R  E  N  L  M  Y  Q  F  L  D  *  A  L  F  Y  F  I  C  L  L  *  V  L  F  D  *  F  I  Y  S  V  C  I  Q  I  *  *  L  V  T  H  S  F  Y  C  Y  D  R  I  *  K  R  E  R  T  Q  K  E  K  G  A  K  L  L  P  F  L  S  G  K  G  L  N  N  H  G  T  S  F  I  F  L  H  L  I  I  S :   V  Y  T  K  K  L  Q  W  S  L  L  L  M  E  S  V  P  C  R  T  F  T  I  H  S  L  R  L  S  A  I  H  L  W  P  P  R  *  V  I  L  L  *  *  N  N  P  K  T  K  R  H  L  S  H  I  Q  *  R  W  T  L  V  P  P  *  L  I  L  K  L  D  Q  *  L  V  Q  S  I  L  K  Q  M  K  I  L  *  I  N  Q  Q  K  V  V  Q  E  N  R  F  W  L  W  K  L  N  H  L  S  R  I  Y  I  M  F  R  K  M  V  L  Q  T  M  I  *  M  R  L  P  K  T  Q  E  S  P  T  V  L  V  L  K  T  V  F  I  L  L  H  S  T  Q  K  P  N  K  V  F  P  T  Q  K  S  V  N  A  L  A  A  L  W  T  S  L  V  K  V  V  M  L  A  T  L  V  I  L  L  R  A  E  K  Q  A  S  T  E  A  A  Q  V  V  T  L  V  M  K  A  A  L  V  V  S  I  A  Q  Y  I  N  H  I  R  Q  M  I  Q  G  G  M  Q  Y  K  L  L  E  P  V  R  E  H  W  V  L  T  T  L  D  C  *  R  D  W  D  V  V  I  *  E  V  F  F  *  Q  S  *  L  A  Q  D  V  S  L  P  *  K  *  W  T  R  Q  L  *  K  V  A  R  N  S  *  E  L  K  R  K  E  R  Y  C  S  L  W  I  I  P  F  Y  Q  H  C  I  R  T  L  K  Q  I  N  F  R  A  W  *  W  N  S  A  L  V  E  I  C  M  H  L  G  K  S  S  Q  E  N  S  S  R  S  M  L  P   : G  F  T  W  L  K  S  F  L  L  *  S  T  C  T  C  L  E  S  F  T  E  T  L  N  Q  R  M  F  W  F  E  K  M  A  I  *  C  F  L  I  L  T  S  P  *  G  V  P  *  A  Q  L  *  L  D  L  Q  I  Q  A  *  S  A  R  A  H  H  T  V  S  S  L  L  V  L  S  H  L  V  S  Y  S  L  H  V  Y  N  L  H  V  L  H  H  V  F  *  A  R  T  R  K  K  R  S  P  N  K  R  Q  K  H  I  T  K  *  T  G  L  F  Q  N  S  L  L  N  Q  R  V  L  D  Q  C  L  L  W  E  H  M  S  T  *  L  Q  K  L  *  R  V  K  D  T  A  V  L  *  I  G  G  H  L  G  S  F  S  M  N  S  C  L  D  K  L  L  S  K  V  Q  A  T  G  Q  H  C  L  T  L  L  D  S  P  *  N  F  L  K  H  L  V  L  V  L  Q  Q  G  T  *  *  E  A  Y  L  *  R  S  H  N  I  A  L  H  I  G  E  G  L  L  K  *  N  N  I  L  S  S  R  M  *  T  G  H  L  *  D  V  P  V  L  Q  M  Y  Q  S  R  P  P  *  H  M  I  C  P  E  H  H  Q  Q  E  R  P  P  D  L  M  *  S  L  Q  V  I  I  L  R  L  I  S  S  E  E  F  F  S  L  A  A  M  P  P  L  P  F  Y  E  E  L  N  V  E  E  D  T  V  F  V  F  L  Y  A  N  V  K  C  I  L  C  *  N  A  R  C  I  G  I  R  W  *  R  P  F  F  F  V  *  V  C  C  *  Y  *  *  R  R  P  *  C  G  Y  K  A  R  H  C  W  M  *  C  F  K  I  F  N  *  R  I  K  S  *  C  A  I  I  Q  S  F  K  K  L   </first_frame>
            <second_frame>  E  D  E  G  E  N  R  V  K  Y  R  K  R  K  R  E  K  I  L  C  I  N  F  L  T  K  L  Y  S  I  S  F  V  C  C  E  F  C  L  I  D  S  F  T  L  F  V  S  K  Y  N  N  *  S  L  T  L  F  I  V  T  I  G  S  E  K  G  R  G  P  R  K  K  K  V  Q  S  C  Y  P  F  *  V  E  R  V  S  I  I  M  A  H  H  S  F  F  S  I  *  *  S   : V  F  I  P  K  N  Y  N  G  V  S  C  *  W  N  Q  F  L  A  E  R  S  Q  F  I  R  C  G  *  V  Q  Y  I  F  G  L  Q  D  K  S  S  S  F  D  E  T  I  R  K  Q  R  G  I  Y  L  I  S  N  S  D  G  P  W  F  H  R  S  S  Y  S  N  W  I  S  D  W  F  K  A  F  *  S  K  *  R  Y  C  K  S  I  S  R  R  L  F  R  R  T  G  F  G  F  G  N  *  I  I  Y  Q  G  F  T  S  C  F  E  K  W  Y  F  K  R  *  F  E  C  D  C  Q  R  L  R  N  H  L  L  S  *  S  S  K  Q  F  L  F  C  Y  T  V  H  R  S  Q  T  K  F  F  Q  H  R  S  Q  *  M  R  *  Q  H  C  G  Q  V  W  *  K  W  *  C  *  Q  L  L  *  S  C  *  E  Q  K  N  K  L  L  Q  R  Q  H  R  *  *  R  *  *  *  K  Q  L  *  *  F  Q  *  H  S  I  *  T  T  *  G  K  *  Y  K  V  G  C  N  T  S  Y  *  S  P  *  G  N  I  G  F  *  P  L  *  T  V  E  E  I  G  M  W  *  Y  R  K  C  F  S  S  R  V  D  W  H  K  M  F  L  C  H  E  S  D  G  Q  G  S  S  R  K  S  Q  E  T  R  E  S  S  N  G  K  R  D  T  A  V  S  G  S  S  L  S  T  N  T  V  F  A  L  *  N  R  *  I  F  V  L  G  D  G  I  L  P  W  W  R  F  A  C  T  *  A  K  A  A  R  K  I  L  P  G  A  C  C  Q  :  V  L  R  G  *  S  P  S  C  S  R  V  L  A  H  A  W  N  H  L  Q  R  P  *  T  R  E  C  F  G  S  R  R  W  P  Y  N  A  F  *  F  *  P  L  L  E  V  C  R  E  P  N  S  S  *  I  F  K  F  K  L  R  V  Q  E  L  I  I  L  C  P  A  C  L  Y  *  A  I  L  C  R  T  A  C  M  Y  T  T  F  M  F  Y  T  T  F  S  K  Q  E  Q  E  R  K  E  V  Q  T  K  D  R  N  I  *  P  S  E  P  A  S  S  R  T  P  C  *  T  N  E  C  S  I  N  V  F  C  G  N  T  *  V  P  S  S  R  N  Y  K  G  *  R  T  R  Q  C  C  R  L  V  D  I  W  D  L  S  L  *  T  L  V  W  T  N  S  F  Q  R  C  R  Q  Q  G  N  I  V  *  R  C  W  T  A  L  E  I  S  *  N  T  *  C  *  F  C  S  K  G  L  D  K  R  P  T  C  E  G  A  T  T  S  P  C  I  *  A  R  G  Y  *  N  K  T  T  S  F  L  P  E  C  E  L  G  T  Y  K  M  Y  Q  S  S  R  C  T  K  A  V  L  H  D  I  *  Y  A  P  N  T  T  S  R  K  G  P  R  T  *  C  E  A  F  R  *  L  F  *  D  *  F  L  L  K  N  S  F  P  W  Q  Q  C  P  H  C  R  S  T  K  S  S  T  L  R  K  T  Q  F  L  C  S  F  M  L  M  *  S  A  Y  S  V  E  M  Q  D  A  *  E  L  D  G  E  G  H  F  S  L  Y  K  Y  V  V  D  I  N  E  E  G  L  D  V  A  I  K  L  G  I  A  G  C  D  V  L  K  F  S  I  E  E  S  K  V  D  V  P  *  S  S  H  L  K  S  *  </second_frame>
            <third_frame>   K  M  K  E  K  T  E  *  N  I  E  R  E  R  E  R  K  S  Y  V  S  I  S  *  L  S  S  I  L  F  H  L  F  V  V  S  F  V  *  L  I  H  L  L  C  L  Y  P  N  I  I  I  S  H  S  L  F  L  L  L  R  S  D  L  K  K  G  E  D  P  E  R  K  R  C  K  A  V  T  L  F  K  W  K  G  S  Q  *  S  W  H  I  I  H  F  S  P  F  D  N  Q  :  C  L  Y  Q  K  I  T  M  E  S  L  V  D  G  I  S  S  L  P  N  V  H  N  S  F  A  A  V  E  C  N  T  S  L  A  S  K  I  S  H  P  P  L  M  K  Q  S  E  N  K  E  A  S  I  S  Y  P  I  A  M  D  L  G  S  T  V  A  H  T  Q  T  G  S  V  T  G  S  K  H  F  K  A  N  E  D  T  V  N  Q  S  A  E  G  C  S  G  E  Q  V  L  A  L  E  T  E  S  S  I  K  D  L  H  H  V  S  K  N  G  T  S  N  D  D  L  N  A  T  A  K  D  S  G  I  T  Y  C  P  S  P  Q  N  S  F  Y  S  A  T  Q  Y  T  E  A  K  Q  S  F  S  N  T  E  V  S  E  C  A  S  S  T  V  D  K  S  G  E  S  G  D  V  S  N  S  C  D  L  V  E  S  R  K  T  S  F  Y  R  G  S  T  G  S  D  V  S  D  E  S  S  S  S  S  F  N  S  T  V  Y  K  P  H  K  A  N  D  T  R  W  D  A  I  Q  V  I  R  A  R  E  G  T  L  G  F  N  H  F  R  L  L  K  R  L  G  C  G  D  I  G  S  V  F  L  A  E  L  I  G  T  R  C  F  F  A  M  K  V  M  D  K  A  A  L  E  S  R  K  K  L  V  R  A  Q  T  E  R  E  I  L  Q  S  L  D  H  P  F  L  P  T  L  Y  S  H  F  E  T  D  K  F  S  C  L  V  M  E  F  C  P  G  G  D  L  H  A  L  R  Q  K  Q  P  G  K  F  F  P  E  H  A  A  R :   F  Y  V  A  E  V  L  L  A  L  E  Y  L  H  M  L  G  I  I  Y  R  D  L  K  P  E  N  V  L  V  R  E  D  G  H  I  M  L  S  D  F  D  L  S  L  R  C  A  V  S  P  T  L  V  R  S  S  N  S  S  L  E  C  K  S  S  S  Y  C  V  Q  P  A  C  I  E  P  S  C  V  V  Q  P  A  C  I  Q  P  S  C  F  T  P  R  F  L  S  K  N  K  K  E  K  K  S  K  Q  K  T  E  T  Y  N  Q  V  N  R  P  L  P  E  L  L  A  E  P  T  S  A  R  S  M  S  F  V  G  T  H  E  Y  L  A  P  E  I  I  K  G  E  G  H  G  S  A  V  D  W  W  T  F  G  I  F  L  Y  E  L  L  F  G  Q  T  P  F  K  G  A  G  N  R  A  T  L  F  N  V  V  G  Q  P  L  K  F  P  E  T  P  S  V  S  F  A  A  R  D  L  I  R  G  L  L  V  K  E  P  Q  H  R  L  A  Y  R  R  G  A  T  E  I  K  Q  H  P  F  F  Q  N  V  N  W  A  L  I  R  C  T  S  P  P  D  V  P  K  P  S  S  M  T  Y  D  M  P  R  T  P  P  A  G  K  A  P  G  L  D  V  K  P  S  G  N  Y  F  E  I  D  F  F  *  R  I  L  F  L  G  S  N  A  P  I  A  V  L  R  R  A  Q  R  *  G  R  H  S  F  C  V  P  L  C  *  C  K  V  H  T  L  L  K  C  K  M  H  R  N  *  M  V  K  A  I  F  L  C  I  S  M  L  L  I  L  M  K  K  A  L  M  W  L  *  S  *  A  L  L  D  V  M  F  *  N  F  Q  L  K  N  Q  K  L  M  C  H  N  P  V  I  *  K  V  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65820" stop="65782"/>
                    <exon start="65355" stop="64319"/>
                    <exon start="63602" stop="62741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1935</number_coding_nucleotides>
                  <number_encoded_amino_acids>645</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWHIIHFSPFDNQCLYQKITMESLVDGISSLPNVHNSFAAVECNTSLASKISHPPLMKQSENKEASISYPIAMDLGSTVAHTQTGSVTGSKHFKANEDTVNQSAEGCSGEQVLALETESSIKDLHHVSKNGTSNDDLNATAKDSGITYCPSPQNSFYSATQYTEAKQSFSNTEVSECASSTVDKSGESGDVSNSCDLVESRKTSFYRGSTGSDVSDESSSSSFNSTVYKPHKANDTRWDAIQVIRAREGTLGFNHFRLLKRLGCGDIGSVFLAELIGTRCFFAMKVMDKAALESRKKLVRAQTEREILQSLDHPFLPTLYSHFETDKFSCLVMEFCPGGDLHALRQKQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVRSSNSSLECKSSSYCVQPACIEPSCVVQPACIQPSCFTPRFLSKNKKEKKSKQKTETYNQVNRPLPELLAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGQTPFKGAGNRATLFNVVGQPLKFPETPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCTSPPDVPKPSSMTYDMPRTPPAGKAPGLDVKPSGNYFEIDFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="73454" PGL_stop="69160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73454" e_stop="73408"/>
            <exon e_start="73323" e_stop="73201"/>
            <exon e_start="69427" e_stop="69160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.936" e_score="0.915"/>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="73454" e_stop="73408" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.936">
            <gDNA_intron_boundary i_start="73407" i_stop="73324" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73323" e_stop="73201" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="73200" i_stop="69428" i_length="3773"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="69427" e_stop="69160" e_length="268"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73454" stop="73408"/>
              <exon start="73323" stop="73201"/>
              <exon start="69427" stop="69160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280111" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTAAGGAAATGGCTCTGGTTTCTAACACTAACTCATTCTTAAAG : TCACAGAGGCACCAAGTTTACTGCAGAAAGAAGGAGAAAGATAAGAGTCAAAATCCCCAACCCTATAAAGTCATTGAAATTTCACCCCCTCCCAAGAACCTTGGCATACGTTGCCTCCCCTCG : AACTTGCAGTGTGGAGAAAGTGTAACCATCGAAGGCCGAGCTTACACCATTTCAGCTGTAACTCATCGTTATCAGCTTCGTAAAGGGAAATACGAGCCTAGTGAGAAGAGGCTTGATGTGTTGTCTACTGGAAGATACATCTTAAATTTGTACTTAGAAAATTTGCTAGAACAATCTTGACTATGATGTAGATTACTCCACTTTTCCCTTCATCTTTATGTATACATTATGAAAATACAACTTCATTCAATTGCCTGTGTCAAATGAA</gDNA_template>
            <first_frame> E  L  R  K  W  L  W  F  L  T  L  T  H  S  *  S :   H  R  G  T  K  F  T  A  E  R  R  R  K  I  R  V  K  I  P  N  P  I  K  S  L  K  F  H  P  L  P  R  T  L  A  Y  V  A  S  P  R :   T  C  S  V  E  K  V  *  P  S  K  A  E  L  T  P  F  Q  L  *  L  I  V  I  S  F  V  K  G  N  T  S  L  V  R  R  G  L  M  C  C  L  L  E  D  T  S  *  I  C  T  *  K  I  C  *  N  N  L  D  Y  D  V  D  Y  S  T  F  P  F  I  F  M  Y  T  L  *  K  Y  N  F  I  Q  L  P  V  S  N  E </first_frame>
            <second_frame>  N  *  G  N  G  S  G  F  *  H  *  L  I  L  K   : V  T  E  A  P  S  L  L  Q  K  E  G  E  R  *  E  S  K  S  P  T  L  *  S  H  *  N  F  T  P  S  Q  E  P  W  H  T  L  P  P  L   : E  L  A  V  W  R  K  C  N  H  R  R  P  S  L  H  H  F  S  C  N  S  S  L  S  A  S  *  R  E  I  R  A  *  *  E  E  A  *  C  V  V  Y  W  K  I  H  L  K  F  V  L  R  K  F  A  R  T  I  L  T  M  M  *  I  T  P  L  F  P  S  S  L  C  I  H  Y  E  N  T  T  S  F  N  C  L  C  Q  M   </second_frame>
            <third_frame>   I  K  E  M  A  L  V  S  N  T  N  S  F  L  K  :  S  Q  R  H  Q  V  Y  C  R  K  K  E  K  D  K  S  Q  N  P  Q  P  Y  K  V  I  E  I  S  P  P  P  K  N  L  G  I  R  C  L  P  S  :  N  L  Q  C  G  E  S  V  T  I  E  G  R  A  Y  T  I  S  A  V  T  H  R  Y  Q  L  R  K  G  K  Y  E  P  S  E  K  R  L  D  V  L  S  T  G  R  Y  I  L  N  L  Y  L  E  N  L  L  E  Q  S  *  L  *  C  R  L  L  H  F  S  L  H  L  Y  V  Y  I  M  K  I  Q  L  H  S  I  A  C  V  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73452" stop="73408"/>
                    <exon start="73323" stop="73201"/>
                    <exon start="69427" stop="69248"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKEMALVSNTNSFLKSQRHQVYCRKKEKDKSQNPQPYKVIEISPPPKNLGIRCLPSNLQCGESVTIEGRAYTISAVTHRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="78674" PGL_stop="74961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78674" e_stop="78352"/>
            <exon e_start="77239" e_stop="77199"/>
            <exon e_start="77115" e_stop="76952"/>
            <exon e_start="76830" e_stop="76728"/>
            <exon e_start="76632" e_stop="76463"/>
            <exon e_start="75866" e_stop="74961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.997"/>
          <exon-intron don_prob="0.899" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="78674" e_stop="78352" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="78351" i_stop="77240" i_length="1112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77239" e_stop="77199" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.899" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77198" i_stop="77116" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77115" e_stop="76952" e_length="164"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="76951" i_stop="76831" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76830" e_stop="76728" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.731" acc_prob="0.915">
            <gDNA_intron_boundary i_start="76727" i_stop="76633" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76632" e_stop="76463" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76462" i_stop="75867" i_length="596"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75866" e_stop="74961" e_length="906"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78674" stop="78352"/>
              <exon start="77239" stop="77199"/>
              <exon start="77115" stop="76952"/>
              <exon start="76830" stop="76728"/>
              <exon start="76632" stop="76463"/>
              <exon start="75866" stop="74961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78638" stop="78352"/>
              <exon start="77239" stop="77199"/>
              <exon start="77115" stop="76952"/>
              <exon start="76830" stop="76807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78571" stop="78352"/>
              <exon start="77239" stop="77199"/>
              <exon start="77115" stop="76952"/>
              <exon start="76830" stop="76728"/>
              <exon start="76632" stop="76463"/>
              <exon start="75866" stop="75796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78571" stop="78352"/>
              <exon start="77239" stop="77199"/>
              <exon start="77115" stop="76952"/>
              <exon start="76830" stop="76728"/>
              <exon start="76632" stop="76528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75707" stop="75162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75707" stop="75162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75585" stop="75131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422422" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75585" stop="75131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75520" stop="75241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCCGAACATACTCTAATCGAACGTTCCCCTATCAAACTATCTAGGGTTTTGGTATATAAAAGCGCCGACAACGTCCTGTACTAGATCAGACCGCATATTTTCACGGTGAACCTCAGAGCTCCGGTTCCGATTCATTGAAAACTTCCTTGAAAAACACCGACAAACGTCTTCTTCTCGATGGAGGAACAAAATGGGACTGTAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGACGACCTTAGAACTACTCCCGACCATCAAAACGACGCCGGCGCTTCTCAGCCTCTTACCGGAGATGGTGCTAGTCCTGG : AAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAG : CTCAATTTGTCAAGCACTTCGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGTTTGGTTTTGTGACTTATGCTGACCCATCCGTGGTAGATAAAGTCATTGAGGACGACCATGTTATAAATGGAAAGCAA : GTGGAAATCAAGCGAACTATACCTAGAGGAGGAGGTTCCAGCTCAAAAGATTTCAAGACAAAGAAGATTTTTGTGGGCGGTATCCCAACAACAATTAGTGAAG : ATGAGTTCAGAGACTTCTTTTTAAAGTTTGGAGAGGTGAAAGAGCACCAGATCATGCGTGACCATTCTACTAGTCGTTCTCGTGGCTTTGGATTCATCACTTTTGACACAGAAAAATCTGTCGAGGATATCTTGGCTAATGGAAACAAGCTTGATTTTTCTGGAACCCAG : GTGGAAATCAAGAAGGCTGAGCCCAAGAGACCTAATGCGCCACAACCAGCCCCATTCAGGCGTCAAGGGAATCCAAGAGCTGCATTTGGTGGTGGATTTTCAGATGCTTATGGTGGATATGGAGACTCTGGTTATGGTGTTGTTGCTGGTCCTGGTCCTGGTCCTTACAGGTCTGGTGGCCCCTATGGTGGCAGATCCAGTGCATTTGGTGGATATAGTGGAGGAGGAATGGGTGGATATGGAGCATATGGTGGCGGTGGTGCCTACGGAGGAGGTTTCAGGGAGGAGGCTTCTTTTGGGTATTCTAGCCGTTATGGCAGTGGAGCCTTTGGTAGAGGCTACGATGTTGGTGGTGGATATGGAGGAGCAGGTGAAGGTTATGGAGGATATGGTGCTGGTGGCGGTGGATATGGCAGTGGATATGGTGCCGCTGGTCTTGGCAGTGGGTATGGAGGAGATAGTGCAGGAGGTTCAATGTATGGAAGCAGTAGAGGAAGCTATGGTGGTGCTGGTGCTGGTTCAGGCAGATACCACCCTTATGGAAGATAGAAAGTGAAATGTTGAAGGTGCAAAGCTGAATTGTTTCTGGCTTGGTGATTTTAAGCTTATGACCAGAGATGTATACTCATCAAGCACTTGTTGAGAGCTAAATCTTGTTTTTTTTTCTCTTATCGAATTTTAATTGAAAAAATATTAGTTCAGTTAATATACTGGTGTCTTTGATATCGATTGGTTTATCAAGGAACACGACTCATCCATCTGCAATCCTCAAGCAGCATTGTCAAATTGATGTTCAATTCTTTTATGTGCTAGAGGTTTGCATCTCTTTTTTCTTTTAATTAGTTTGGACTAAACCAGTAAATTTATGGATCCTAGAGACTGTCTAAATGAGCAAATGATGATTTT</gDNA_template>
            <first_frame> *  S  E  H  T  L  I  E  R  S  P  I  K  L  S  R  V  L  V  Y  K  S  A  D  N  V  L  Y  *  I  R  P  H  I  F  T  V  N  L  R  A  P  V  P  I  H  *  K  L  P  *  K  T  P  T  N  V  F  F  S  M  E  E  Q  N  G  T  V  N  G  V  K  I  K  L  E  E  E  E  T  N  D  D  L  R  T  T  P  D  H  Q  N  D  A  G  A  S  Q  P  L  T  G  D  G  A  S  P  G :   K  I  F  I  G  G  L  A  R  E  T  T  S   : A  Q  F  V  K  H  F  G  K  Y  G  E  I  I  D  S  V  I  M  K  E  R  R  T  G  Q  P  R  G  F  G  F  V  T  Y  A  D  P  S  V  V  D  K  V  I  E  D  D  H  V  I  N  G  K  Q  :  V  E  I  K  R  T  I  P  R  G  G  G  S  S  S  K  D  F  K  T  K  K  I  F  V  G  G  I  P  T  T  I  S  E   : D  E  F  R  D  F  F  L  K  F  G  E  V  K  E  H  Q  I  M  R  D  H  S  T  S  R  S  R  G  F  G  F  I  T  F  D  T  E  K  S  V  E  D  I  L  A  N  G  N  K  L  D  F  S  G  T  Q  :  V  E  I  K  K  A  E  P  K  R  P  N  A  P  Q  P  A  P  F  R  R  Q  G  N  P  R  A  A  F  G  G  G  F  S  D  A  Y  G  G  Y  G  D  S  G  Y  G  V  V  A  G  P  G  P  G  P  Y  R  S  G  G  P  Y  G  G  R  S  S  A  F  G  G  Y  S  G  G  G  M  G  G  Y  G  A  Y  G  G  G  G  A  Y  G  G  G  F  R  E  E  A  S  F  G  Y  S  S  R  Y  G  S  G  A  F  G  R  G  Y  D  V  G  G  G  Y  G  G  A  G  E  G  Y  G  G  Y  G  A  G  G  G  G  Y  G  S  G  Y  G  A  A  G  L  G  S  G  Y  G  G  D  S  A  G  G  S  M  Y  G  S  S  R  G  S  Y  G  G  A  G  A  G  S  G  R  Y  H  P  Y  G  R  *  K  V  K  C  *  R  C  K  A  E  L  F  L  A  W  *  F  *  A  Y  D  Q  R  C  I  L  I  K  H  L  L  R  A  K  S  C  F  F  F  S  Y  R  I  L  I  E  K  I  L  V  Q  L  I  Y  W  C  L  *  Y  R  L  V  Y  Q  G  T  R  L  I  H  L  Q  S  S  S  S  I  V  K  L  M  F  N  S  F  M  C  *  R  F  A  S  L  F  S  F  N  *  F  G  L  N  Q  *  I  Y  G  S  *  R  L  S  K  *  A  N  D  D  F </first_frame>
            <second_frame>  N  P  N  I  L  *  S  N  V  P  L  S  N  Y  L  G  F  W  Y  I  K  A  P  T  T  S  C  T  R  S  D  R  I  F  S  R  *  T  S  E  L  R  F  R  F  I  E  N  F  L  E  K  H  R  Q  T  S  S  S  R  W  R  N  K  M  G  L  *  M  V  L  K  S  S  W  R  K  K  K  L  M  T  T  L  E  L  L  P  T  I  K  T  T  P  A  L  L  S  L  L  P  E  M  V  L  V  L   : E  R  F  L  L  G  A  W  L  E  R  Q  L  Q  :  L  N  L  S  S  T  S  V  N  M  V  K  L  L  I  P  *  L  *  R  K  G  G  Q  D  S  H  V  G  L  V  L  *  L  M  L  T  H  P  W  *  I  K  S  L  R  T  T  M  L  *  M  E  S  K :   W  K  S  S  E  L  Y  L  E  E  E  V  P  A  Q  K  I  S  R  Q  R  R  F  L  W  A  V  S  Q  Q  Q  L  V  K  :  M  S  S  E  T  S  F  *  S  L  E  R  *  K  S  T  R  S  C  V  T  I  L  L  V  V  L  V  A  L  D  S  S  L  L  T  Q  K  N  L  S  R  I  S  W  L  M  E  T  S  L  I  F  L  E  P  R :   W  K  S  R  R  L  S  P  R  D  L  M  R  H  N  Q  P  H  S  G  V  K  G  I  Q  E  L  H  L  V  V  D  F  Q  M  L  M  V  D  M  E  T  L  V  M  V  L  L  L  V  L  V  L  V  L  T  G  L  V  A  P  M  V  A  D  P  V  H  L  V  D  I  V  E  E  E  W  V  D  M  E  H  M  V  A  V  V  P  T  E  E  V  S  G  R  R  L  L  L  G  I  L  A  V  M  A  V  E  P  L  V  E  A  T  M  L  V  V  D  M  E  E  Q  V  K  V  M  E  D  M  V  L  V  A  V  D  M  A  V  D  M  V  P  L  V  L  A  V  G  M  E  E  I  V  Q  E  V  Q  C  M  E  A  V  E  E  A  M  V  V  L  V  L  V  Q  A  D  T  T  L  M  E  D  R  K  *  N  V  E  G  A  K  L  N  C  F  W  L  G  D  F  K  L  M  T  R  D  V  Y  S  S  S  T  C  *  E  L  N  L  V  F  F  S  L  I  E  F  *  L  K  K  Y  *  F  S  *  Y  T  G  V  F  D  I  D  W  F  I  K  E  H  D  S  S  I  C  N  P  Q  A  A  L  S  N  *  C  S  I  L  L  C  A  R  G  L  H  L  F  F  L  L  I  S  L  D  *  T  S  K  F  M  D  P  R  D  C  L  N  E  Q  M  M  I   </second_frame>
            <third_frame>   I  R  T  Y  S  N  R  T  F  P  Y  Q  T  I  *  G  F  G  I  *  K  R  R  Q  R  P  V  L  D  Q  T  A  Y  F  H  G  E  P  Q  S  S  G  S  D  S  L  K  T  S  L  K  N  T  D  K  R  L  L  L  D  G  G  T  K  W  D  C  K  W  C  *  N  Q  A  G  G  R  R  N  *  *  R  P  *  N  Y  S  R  P  S  K  R  R  R  R  F  S  A  S  Y  R  R  W  C  *  S  W  :  K  D  F  Y  W  G  L  G  *  R  D  N  F  S :   S  I  C  Q  A  L  R  *  I  W  *  N  Y  *  F  R  D  Y  E  G  K  A  D  R  T  A  T  W  V  W  F  C  D  L  C  *  P  I  R  G  R  *  S  H  *  G  R  P  C  Y  K  W  K  A   : S  G  N  Q  A  N  Y  T  *  R  R  R  F  Q  L  K  R  F  Q  D  K  E  D  F  C  G  R  Y  P  N  N  N  *  *  R :   *  V  Q  R  L  L  F  K  V  W  R  G  E  R  A  P  D  H  A  *  P  F  Y  *  S  F  S  W  L  W  I  H  H  F  *  H  R  K  I  C  R  G  Y  L  G  *  W  K  Q  A  *  F  F  W  N  P   : G  G  N  Q  E  G  *  A  Q  E  T  *  C  A  T  T  S  P  I  Q  A  S  R  E  S  K  S  C  I  W  W  W  I  F  R  C  L  W  W  I  W  R  L  W  L  W  C  C  C  W  S  W  S  W  S  L  Q  V  W  W  P  L  W  W  Q  I  Q  C  I  W  W  I  *  W  R  R  N  G  W  I  W  S  I  W  W  R  W  C  L  R  R  R  F  Q  G  G  G  F  F  W  V  F  *  P  L  W  Q  W  S  L  W  *  R  L  R  C  W  W  W  I  W  R  S  R  *  R  L  W  R  I  W  C  W  W  R  W  I  W  Q  W  I  W  C  R  W  S  W  Q  W  V  W  R  R  *  C  R  R  F  N  V  W  K  Q  *  R  K  L  W  W  C  W  C  W  F  R  Q  I  P  P  L  W  K  I  E  S  E  M  L  K  V  Q  S  *  I  V  S  G  L  V  I  L  S  L  *  P  E  M  Y  T  H  Q  A  L  V  E  S  *  I  L  F  F  F  L  L  S  N  F  N  *  K  N  I  S  S  V  N  I  L  V  S  L  I  S  I  G  L  S  R  N  T  T  H  P  S  A  I  L  K  Q  H  C  Q  I  D  V  Q  F  F  Y  V  L  E  V  C  I  S  F  F  F  *  L  V  W  T  K  P  V  N  L  W  I  L  E  T  V  *  M  S  K  *  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78521" stop="78352"/>
                    <exon start="77239" stop="77199"/>
                    <exon start="77115" stop="76952"/>
                    <exon start="76830" stop="76728"/>
                    <exon start="76632" stop="76463"/>
                    <exon start="75866" stop="75318"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTPTNVFFSMEEQNGTVNGVKIKLEEEETNDDLRTTPDHQNDAGASQPLTGDGASPGKIFIGGLARETTSAQFVKHFGKYGEIIDSVIMKERRTGQPRGFGFVTYADPSVVDKVIEDDHVINGKQVEIKRTIPRGGGSSSKDFKTKKIFVGGIPTTISEDEFRDFFLKFGEVKEHQIMRDHSTSRSRGFGFITFDTEKSVEDILANGNKLDFSGTQVEIKKAEPKRPNAPQPAPFRRQGNPRAAFGGGFSDAYGGYGDSGYGVVAGPGPGPYRSGGPYGGRSSAFGGYSGGGMGGYGAYGGGGAYGGGFREEASFGYSSRYGSGAFGRGYDVGGGYGGAGEGYGGYGAGGGGYGSGYGAAGLGSGYGGDSAGGSMYGSSRGSYGGAGAGSGRYHPYGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78566" e_stop="78352"/>
            <exon e_start="77239" e_stop="77029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.944"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="78566" e_stop="78352" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="78351" i_stop="77240" i_length="1112"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="77239" e_stop="77029" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78566" stop="78352"/>
              <exon start="77239" stop="77029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAACCTCAGAGCTCCGGTTCCGATTCATTGAAAACTTCCTTGAAAAACACCGACAAACGTCTTCTTCTCGATGGAGGAACAAAATGGGACTGTAAATGGTGTTAAAATCAAGCTGGAGGAAGAAGAAACTAATGACGACCTTAGAACTACTCCCGACCATCAAAACGACGCCGGCGCTTCTCAGCCTCTTACCGGAGATGGTGCTAGTCCTGG : AAAGATTTTTATTGGGGGCTTGGCTAGAGAGACAACTTCAGGTTTGTCGAATAACATCCGCTGCTTTGATCTTCTGCCAAATTGTTTTCTTTCTTGCCTCTAATGTTGCATTGTATATCTGCAGCTCAATTTGTCAAGCACTTCGGTAAATATGGTGAAATTATTGATTCCGTGATTATGAAGGAAAGGCGGACAGGACAGCCACGTGGGT</gDNA_template>
            <first_frame> V  N  L  R  A  P  V  P  I  H  *  K  L  P  *  K  T  P  T  N  V  F  F  S  M  E  E  Q  N  G  T  V  N  G  V  K  I  K  L  E  E  E  E  T  N  D  D  L  R  T  T  P  D  H  Q  N  D  A  G  A  S  Q  P  L  T  G  D  G  A  S  P  G :   K  I  F  I  G  G  L  A  R  E  T  T  S  G  L  S  N  N  I  R  C  F  D  L  L  P  N  C  F  L  S  C  L  *  C  C  I  V  Y  L  Q  L  N  L  S  S  T  S  V  N  M  V  K  L  L  I  P  *  L  *  R  K  G  G  Q  D  S  H  V  G </first_frame>
            <second_frame>  *  T  S  E  L  R  F  R  F  I  E  N  F  L  E  K  H  R  Q  T  S  S  S  R  W  R  N  K  M  G  L  *  M  V  L  K  S  S  W  R  K  K  K  L  M  T  T  L  E  L  L  P  T  I  K  T  T  P  A  L  L  S  L  L  P  E  M  V  L  V  L   : E  R  F  L  L  G  A  W  L  E  R  Q  L  Q  V  C  R  I  T  S  A  A  L  I  F  C  Q  I  V  F  F  L  A  S  N  V  A  L  Y  I  C  S  S  I  C  Q  A  L  R  *  I  W  *  N  Y  *  F  R  D  Y  E  G  K  A  D  R  T  A  T  W   </second_frame>
            <third_frame>   E  P  Q  S  S  G  S  D  S  L  K  T  S  L  K  N  T  D  K  R  L  L  L  D  G  G  T  K  W  D  C  K  W  C  *  N  Q  A  G  G  R  R  N  *  *  R  P  *  N  Y  S  R  P  S  K  R  R  R  R  F  S  A  S  Y  R  R  W  C  *  S  W  :  K  D  F  Y  W  G  L  G  *  R  D  N  F  R  F  V  E  *  H  P  L  L  *  S  S  A  K  L  F  S  F  L  P  L  M  L  H  C  I  S  A  A  Q  F  V  K  H  F  G  K  Y  G  E  I  I  D  S  V  I  M  K  E  R  R  T  G  Q  P  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78521" stop="78352"/>
                    <exon start="77239" stop="77137"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTPTNVFFSMEEQNGTVNGVKIKLEEEETNDDLRTTPDHQNDAGASQPLTGDGASPGKIFIGGLARETTSGLSNNIRCFDLLPNCFLSCL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78469" stop="78352"/>
                    <exon start="77239" stop="77091"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVLKSSWRKKKLMTTLELLPTIKTTPALLSLLPEMVLVLERFLLGAWLERQLQVCRITSAALIFCQIVFFLASNVALYICSSICQALR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="75130" PGL_stop="75847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75130" e_stop="75847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="75130" e_stop="75847" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75130" stop="75847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAACCAATCGATATCAAAGACACCAGTATATTAACTGAACTAATATTTTTTCAATTAAAATTCGATAAGAGAAAAAAAAACAAGATTTAGCTCTCAACAAGTGCTTGATGAGTATACATCTCTGGTCATAAGCTTAAAATCACCAAGCCAGAAACAATTCAGCTTTGCACCTTCAACATTTCACTTTCTATCTTCCATAAGGGTGGTATCTGCCTGAACCAGCACCAGCACCACCATAGCTTCCTCTACTGCTTCCATACATTGAACCTCCTGCACTATCTCCTCCATACCCACTGCCAAGACCAGCGGCACCATATCCACTGCCATATCCACCGCCACCAGCACCATATCCTCCATAACCTTCACCTGCTCCTCCATATCCACCACCAACATCGTAGCCTCTACCAAAGGCTCCACTGCCATAACGGCTAGAATACCCAAAAGAAGCCTCCTCCCTGAAACCTCCTCCGTAGGCACCACCGCCACCATATGCTCCATATCCACCCATTCCTCCTCCACTATATCCACCAAATGCACTGGATCTGCCACCATAGGGGCCACCAGACCTGTAAGGACCAGGACCAGGACCAGCAACAACACCATAACCAGAGTCTCCATATCCACCATAAGCATCTGAAAATCCACCACCAAATGCAGCTCTTGGATTCCCTTGACGCCTGAATGGGGCTGGTTGTGGCGCATTAGGTCTCTTGGGCT</gDNA_template>
            <first_frame> *  T  N  R  Y  Q  R  H  Q  Y  I  N  *  T  N  I  F  S  I  K  I  R  *  E  K  K  K  Q  D  L  A  L  N  K  C  L  M  S  I  H  L  W  S  *  A  *  N  H  Q  A  R  N  N  S  A  L  H  L  Q  H  F  T  F  Y  L  P  *  G  W  Y  L  P  E  P  A  P  A  P  P  *  L  P  L  L  L  P  Y  I  E  P  P  A  L  S  P  P  Y  P  L  P  R  P  A  A  P  Y  P  L  P  Y  P  P  P  P  A  P  Y  P  P  *  P  S  P  A  P  P  Y  P  P  P  T  S  *  P  L  P  K  A  P  L  P  *  R  L  E  Y  P  K  E  A  S  S  L  K  P  P  P  *  A  P  P  P  P  Y  A  P  Y  P  P  I  P  P  P  L  Y  P  P  N  A  L  D  L  P  P  *  G  P  P  D  L  *  G  P  G  P  G  P  A  T  T  P  *  P  E  S  P  Y  P  P  *  A  S  E  N  P  P  P  N  A  A  L  G  F  P  *  R  L  N  G  A  G  C  G  A  L  G  L  L  G  </first_frame>
            <second_frame>  K  P  I  D  I  K  D  T  S  I  L  T  E  L  I  F  F  Q  L  K  F  D  K  R  K  K  N  K  I  *  L  S  T  S  A  *  *  V  Y  I  S  G  H  K  L  K  I  T  K  P  E  T  I  Q  L  C  T  F  N  I  S  L  S  I  F  H  K  G  G  I  C  L  N  Q  H  Q  H  H  H  S  F  L  Y  C  F  H  T  L  N  L  L  H  Y  L  L  H  T  H  C  Q  D  Q  R  H  H  I  H  C  H  I  H  R  H  Q  H  H  I  L  H  N  L  H  L  L  L  H  I  H  H  Q  H  R  S  L  Y  Q  R  L  H  C  H  N  G  *  N  T  Q  K  K  P  P  P  *  N  L  L  R  R  H  H  R  H  H  M  L  H  I  H  P  F  L  L  H  Y  I  H  Q  M  H  W  I  C  H  H  R  G  H  Q  T  C  K  D  Q  D  Q  D  Q  Q  Q  H  H  N  Q  S  L  H  I  H  H  K  H  L  K  I  H  H  Q  M  Q  L  L  D  S  L  D  A  *  M  G  L  V  V  A  H  *  V  S  W  A </second_frame>
            <third_frame>   N  Q  S  I  S  K  T  P  V  Y  *  L  N  *  Y  F  F  N  *  N  S  I  R  E  K  K  T  R  F  S  S  Q  Q  V  L  D  E  Y  T  S  L  V  I  S  L  K  S  P  S  Q  K  Q  F  S  F  A  P  S  T  F  H  F  L  S  S  I  R  V  V  S  A  *  T  S  T  S  T  T  I  A  S  S  T  A  S  I  H  *  T  S  C  T  I  S  S  I  P  T  A  K  T  S  G  T  I  S  T  A  I  S  T  A  T  S  T  I  S  S  I  T  F  T  C  S  S  I  S  T  T  N  I  V  A  S  T  K  G  S  T  A  I  T  A  R  I  P  K  R  S  L  L  P  E  T  S  S  V  G  T  T  A  T  I  C  S  I  S  T  H  S  S  S  T  I  S  T  K  C  T  G  S  A  T  I  G  A  T  R  P  V  R  T  R  T  R  T  S  N  N  T  I  T  R  V  S  I  S  T  I  S  I  *  K  S  T  T  K  C  S  S  W  I  P  L  T  P  E  W  G  W  L  W  R  I  R  S  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75396" stop="75767"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSCTISSIPTAKTSGTISTAISTATSTISSITFTCSSISTTNIVASTKGSTAITARIPKRSLLPETSSVGTTATICSISTHSSSTISTKCTGSATIGATRPVRTRTRTSNNTITRVSISTISI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75242" stop="75562"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYISGHKLKITKPETIQLCTFNISLSIFHKGGICLNQHQHHHSFLYCFHTLNLLHYLLHTHCQDQRHHIHCHIHRHQHHILHNLHLLLHIHHQHRSLYQRLHCHNG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="85990" PGL_stop="85044"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85990" e_stop="85963"/>
            <exon e_start="85872" e_stop="85250"/>
            <exon e_start="85090" e_stop="85044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85990" e_stop="85963" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85962" i_stop="85873" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="85872" e_stop="85250" e_length="623"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85249" i_stop="85091" i_length="159"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85090" e_stop="85044" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85990" stop="85963"/>
              <exon start="85872" stop="85250"/>
              <exon start="85090" stop="85044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85990" stop="85963"/>
              <exon start="85872" stop="85373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAGGACTACCAGTTAGGTGATAAAG : GTCAGGAATGTGGTTCTTCATTTAGTGTTTCCACCGCACAGGGATTTGGTCTCATCAACAACACGAGGCCTTTCATATCACCAGCATTAAACCAATCAACTGTTGATCAACCTTTTTATTCCCATTTTCCAAGTACATTTACAGTGGAAAGAGCAGGGGTTGACTCTCTATCAAAAAATTCTACCTCATTAGCACAACAGGCCATTTCCCATATATTTCCCCCAAACCCGTCATTGTTGAACTCTTGTGGCACTAGAAATAGAGTGCAATCTACTGCCTCAGATGTTTCCTTTTCTCCGTGGAACAATTCAAATCAGTTTGCACCTTTTAAACCAGCTTCCAGTTCTTCCACTGCCTTCACTACTCCATTAAGGAACCCATTTTCTTTATCAACATCTGCCCCTCTATCTCCATGTTCGGTCTCACCTTCCACATATCCTTTGTTAACTAAGCCATCAGGCCATGATTTTTATCAGAAGAACTCTTTTTCTACCACTCCTGTTTTAACTACAGGAGGCGCTTCACAATCCACGTTATGCTTGAACTGCCTAAAGCAGTCACAGCCTACTCCACCAGGACTTTCTAATGTTTCAAGCACTCCACTTGCTGCGAATCAAAATACT : CCTCTGTTCATTGGTCCTCTGCAGCCAGAAATAACTCCTAAAGTTGG</gDNA_template>
            <first_frame> F  E  D  Y  Q  L  G  D  K   : G  Q  E  C  G  S  S  F  S  V  S  T  A  Q  G  F  G  L  I  N  N  T  R  P  F  I  S  P  A  L  N  Q  S  T  V  D  Q  P  F  Y  S  H  F  P  S  T  F  T  V  E  R  A  G  V  D  S  L  S  K  N  S  T  S  L  A  Q  Q  A  I  S  H  I  F  P  P  N  P  S  L  L  N  S  C  G  T  R  N  R  V  Q  S  T  A  S  D  V  S  F  S  P  W  N  N  S  N  Q  F  A  P  F  K  P  A  S  S  S  S  T  A  F  T  T  P  L  R  N  P  F  S  L  S  T  S  A  P  L  S  P  C  S  V  S  P  S  T  Y  P  L  L  T  K  P  S  G  H  D  F  Y  Q  K  N  S  F  S  T  T  P  V  L  T  T  G  G  A  S  Q  S  T  L  C  L  N  C  L  K  Q  S  Q  P  T  P  P  G  L  S  N  V  S  S  T  P  L  A  A  N  Q  N  T  :  P  L  F  I  G  P  L  Q  P  E  I  T  P  K  V   </first_frame>
            <second_frame>  L  R  T  T  S  *  V  I  K  :  V  R  N  V  V  L  H  L  V  F  P  P  H  R  D  L  V  S  S  T  T  R  G  L  S  Y  H  Q  H  *  T  N  Q  L  L  I  N  L  F  I  P  I  F  Q  V  H  L  Q  W  K  E  Q  G  L  T  L  Y  Q  K  I  L  P  H  *  H  N  R  P  F  P  I  Y  F  P  Q  T  R  H  C  *  T  L  V  A  L  E  I  E  C  N  L  L  P  Q  M  F  P  F  L  R  G  T  I  Q  I  S  L  H  L  L  N  Q  L  P  V  L  P  L  P  S  L  L  H  *  G  T  H  F  L  Y  Q  H  L  P  L  Y  L  H  V  R  S  H  L  P  H  I  L  C  *  L  S  H  Q  A  M  I  F  I  R  R  T  L  F  L  P  L  L  F  *  L  Q  E  A  L  H  N  P  R  Y  A  *  T  A  *  S  S  H  S  L  L  H  Q  D  F  L  M  F  Q  A  L  H  L  L  R  I  K  I  L :   L  C  S  L  V  L  C  S  Q  K  *  L  L  K  L  </second_frame>
            <third_frame>   *  G  L  P  V  R  *  *  R :   S  G  M  W  F  F  I  *  C  F  H  R  T  G  I  W  S  H  Q  Q  H  E  A  F  H  I  T  S  I  K  P  I  N  C  *  S  T  F  L  F  P  F  S  K  Y  I  Y  S  G  K  S  R  G  *  L  S  I  K  K  F  Y  L  I  S  T  T  G  H  F  P  Y  I  S  P  K  P  V  I  V  E  L  L  W  H  *  K  *  S  A  I  Y  C  L  R  C  F  L  F  S  V  E  Q  F  K  S  V  C  T  F  *  T  S  F  Q  F  F  H  C  L  H  Y  S  I  K  E  P  I  F  F  I  N  I  C  P  S  I  S  M  F  G  L  T  F  H  I  S  F  V  N  *  A  I  R  P  *  F  L  S  E  E  L  F  F  Y  H  S  C  F  N  Y  R  R  R  F  T  I  H  V  M  L  E  L  P  K  A  V  T  A  Y  S  T  R  T  F  *  C  F  K  H  S  T  C  C  E  S  K  Y   : S  S  V  H  W  S  S  A  A  R  N  N  S  *  S  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85990" stop="85963"/>
                    <exon start="85872" stop="85250"/>
                    <exon start="85090" stop="85046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEDYQLGDKGQECGSSFSVSTAQGFGLINNTRPFISPALNQSTVDQPFYSHFPSTFTVERAGVDSLSKNSTSLAQQAISHIFPPNPSLLNSCGTRNRVQSTASDVSFSPWNNSNQFAPFKPASSSSTAFTTPLRNPFSLSTSAPLSPCSVSPSTYPLLTKPSGHDFYQKNSFSTTPVLTTGGASQSTLCLNCLKQSQPTPPGLSNVSSTPLAANQNTPLFIGPLQPEITPKV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="94359" PGL_stop="95615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94359" e_stop="94757"/>
            <exon e_start="95110" e_stop="95149"/>
            <exon e_start="95346" e_stop="95615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.366" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.464" acc_prob="0.804" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94359" e_stop="94757" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.366" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94758" i_stop="95109" i_length="352"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95110" e_stop="95149" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.464" acc_prob="0.804">
            <gDNA_intron_boundary i_start="95150" i_stop="95345" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="95346" e_stop="95615" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94359" stop="94757"/>
              <exon start="95110" stop="95149"/>
              <exon start="95346" stop="95580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94359" stop="94757"/>
              <exon start="95110" stop="95149"/>
              <exon start="95346" stop="95442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94360" stop="94757"/>
              <exon start="95110" stop="95149"/>
              <exon start="95346" stop="95615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCATTTACACTCACCGGCAGTTCGGCTCTCAGCTCTCAACTCTCCGATGACAATGTCGATCAAAACCCTTTTAACTCTTCGATGACGATGTCAATCGAAACCACTTAATCGATTTTCCTGTCTTAGTACTTCGGCTCTCAACTCTCCGATGACGATGTCGATCAAAACCCTTTTAACTCTCCGATGACGATGTCCATCGGAATCCCTAAATCGATTTTCCCGGCGATCAATCTATTGGTGTTCTTTCCATTATCTACTAGAGTACTAGAGTAGAATTCTTGTATGCATTCTACCCTTCTTTTTTTACAAAAATCAAGAAGTTGGTATCAAAAGAAGAAACCCTAAACTAATTTTCCCGCGGTTCTTATCTGCTCAAGTAATAGTACTGGTCTTCCCAG : GGAGTCAAAAGATGTACATGCGATGGGGAGTCAAAAGAAG : AATTTGCACGAACGATATCTCAAAGTTTCTTCGTTTATGGGACAAAATGGAAGGACTGCAGTCCAGAGATTACAATTGAGTACCTTAGCTATATCTCAGATATTTTTGTGACTTGTTCTCTATTTTGTTAAGATGATGGAATTTTTTCTTCTCCAATATGAGTTGCAGAGCGGTACTGAACAGAGTATCTGAAGATTTAGGATTACTGTACTCAATGTAACTTTTGCGTCTTGCATATTTTTGGTGATTCATTGGTTCCTTATTCCACTG</gDNA_template>
            <first_frame> V  I  Y  T  H  R  Q  F  G  S  Q  L  S  T  L  R  *  Q  C  R  S  K  P  F  *  L  F  D  D  D  V  N  R  N  H  L  I  D  F  P  V  L  V  L  R  L  S  T  L  R  *  R  C  R  S  K  P  F  *  L  S  D  D  D  V  H  R  N  P  *  I  D  F  P  G  D  Q  S  I  G  V  L  S  I  I  Y  *  S  T  R  V  E  F  L  Y  A  F  Y  P  S  F  F  T  K  I  K  K  L  V  S  K  E  E  T  L  N  *  F  S  R  G  S  Y  L  L  K  *  *  Y  W  S  S  Q  :  G  V  K  R  C  T  C  D  G  E  S  K  E   : E  F  A  R  T  I  S  Q  S  F  F  V  Y  G  T  K  W  K  D  C  S  P  E  I  T  I  E  Y  L  S  Y  I  S  D  I  F  V  T  C  S  L  F  C  *  D  D  G  I  F  S  S  P  I  *  V  A  E  R  Y  *  T  E  Y  L  K  I  *  D  Y  C  T  Q  C  N  F  C  V  L  H  I  F  G  D  S  L  V  P  Y  S  T  </first_frame>
            <second_frame>  S  F  T  L  T  G  S  S  A  L  S  S  Q  L  S  D  D  N  V  D  Q  N  P  F  N  S  S  M  T  M  S  I  E  T  T  *  S  I  F  L  S  *  Y  F  G  S  Q  L  S  D  D  D  V  D  Q  N  P  F  N  S  P  M  T  M  S  I  G  I  P  K  S  I  F  P  A  I  N  L  L  V  F  F  P  L  S  T  R  V  L  E  *  N  S  C  M  H  S  T  L  L  F  L  Q  K  S  R  S  W  Y  Q  K  K  K  P  *  T  N  F  P  A  V  L  I  C  S  S  N  S  T  G  L  P  R :   E  S  K  D  V  H  A  M  G  S  Q  K  K  :  N  L  H  E  R  Y  L  K  V  S  S  F  M  G  Q  N  G  R  T  A  V  Q  R  L  Q  L  S  T  L  A  I  S  Q  I  F  L  *  L  V  L  Y  F  V  K  M  M  E  F  F  L  L  Q  Y  E  L  Q  S  G  T  E  Q  S  I  *  R  F  R  I  T  V  L  N  V  T  F  A  S  C  I  F  L  V  I  H  W  F  L  I  P  L </second_frame>
            <third_frame>   H  L  H  S  P  A  V  R  L  S  A  L  N  S  P  M  T  M  S  I  K  T  L  L  T  L  R  *  R  C  Q  S  K  P  L  N  R  F  S  C  L  S  T  S  A  L  N  S  P  M  T  M  S  I  K  T  L  L  T  L  R  *  R  C  P  S  E  S  L  N  R  F  S  R  R  S  I  Y  W  C  S  F  H  Y  L  L  E  Y  *  S  R  I  L  V  C  I  L  P  F  F  F  Y  K  N  Q  E  V  G  I  K  R  R  N  P  K  L  I  F  P  R  F  L  S  A  Q  V  I  V  L  V  F  P   : G  S  Q  K  M  Y  M  R  W  G  V  K  R  R :   I  C  T  N  D  I  S  K  F  L  R  L  W  D  K  M  E  G  L  Q  S  R  D  Y  N  *  V  P  *  L  Y  L  R  Y  F  C  D  L  F  S  I  L  L  R  *  W  N  F  F  F  S  N  M  S  C  R  A  V  L  N  R  V  S  E  D  L  G  L  L  Y  S  M  *  L  L  R  L  A  Y  F  W  *  F  I  G  S  L  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94628" stop="94757"/>
                    <exon start="95110" stop="95149"/>
                    <exon start="95346" stop="95424"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRILVCILPFFFYKNQEVGIKRRNPKLIFPRFLSAQVIVLVFPGSQKMYMRWGVKRRICTNDISKFLRLWDKMEGLQSRDYN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94705" stop="94757"/>
                    <exon start="95110" stop="95149"/>
                    <exon start="95346" stop="95456"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNFPAVLICSSNSTGLPRESKDVHAMGSQKKNLHERYLKVSSFMGQNGRTAVQRLQLSTLAISQIFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="95918" PGL_stop="97528"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95918" e_stop="95975"/>
            <exon e_start="96075" e_stop="96172"/>
            <exon e_start="96595" e_stop="96787"/>
            <exon e_start="96989" e_stop="97044"/>
            <exon e_start="97159" e_stop="97251"/>
            <exon e_start="97331" e_stop="97528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.714" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.438" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.759" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95918" e_stop="95975" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.714" acc_prob="0.993">
            <gDNA_intron_boundary i_start="95976" i_stop="96074" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96075" e_stop="96172" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.438">
            <gDNA_intron_boundary i_start="96173" i_stop="96594" i_length="422"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96595" e_stop="96787" e_length="193"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96788" i_stop="96988" i_length="201"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96989" e_stop="97044" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.964">
            <gDNA_intron_boundary i_start="97045" i_stop="97158" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97159" e_stop="97251" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.759">
            <gDNA_intron_boundary i_start="97252" i_stop="97330" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="97331" e_stop="97528" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95918" stop="95975"/>
              <exon start="96075" stop="96172"/>
              <exon start="96595" stop="96787"/>
              <exon start="96989" stop="97044"/>
              <exon start="97159" stop="97251"/>
              <exon start="97331" stop="97528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95918" stop="95975"/>
              <exon start="96075" stop="96172"/>
              <exon start="96595" stop="96787"/>
              <exon start="96989" stop="97025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGTATGATCAATCTTCCACCCCAAGTTGTGGGGACGGTGTATTTTTCTGTTGAAAG : GCCAAATGTGAAAAGGAAACTTGTTAACATCTGGAATAGCAAATTAGAAGCTCAAGGGGGGACATGCACAGGTCCACACGATGGGCAGTCAAAAGAAG : AGCGGTACTGGAAGAGGAACAGATAATCTTAAGAATCAGGATACTATACTGAGTGTCACTTCTGGCGTGTTGCATTTCATTGGTTCCTGATACCATTGATAAAAACTGCATTAAGGGTGCCAAAGTTCTCGAACAGGTTGATAAGAAGTTTATTCCCATTGTGGCAAGCACAACACCTGCTATAATTGATCAG : GATTTTTCTCTTTGCAGTCATTGTTGGTGATGTATTTTATAACGAACCAGTTCGAA : CCAAAAGAAGGTCTTGCATTCTCTGGAAGAGACTCTGCTGAGAATCACCCTTGTGCAATCCAGTGTCTCCTTCAAAATTGCTGATATTGAAAG : TGAGGATGACGTGCTTTGCACATGTACCTCTCATTCTCCATTGCCAAAATTGTCCAGTGGGTTTGGGATTCAACTGACCTCCCTTAACAAATTGAATGCAAGTGATGGTTCATTCAAGCTCTCAGGATACATTTCAGGTCCTGATTTTTACGCAATGAGCGTATAAAGGCCCAAATTGATGGATAAGAGATTTGATAG</gDNA_template>
            <first_frame> *  V  *  S  I  F  H  P  K  L  W  G  R  C  I  F  L  L  K   : G  Q  M  *  K  G  N  L  L  T  S  G  I  A  N  *  K  L  K  G  G  H  A  Q  V  H  T  M  G  S  Q  K  K  :  S  G  T  G  R  G  T  D  N  L  K  N  Q  D  T  I  L  S  V  T  S  G  V  L  H  F  I  G  S  *  Y  H  *  *  K  L  H  *  G  C  Q  S  S  R  T  G  *  *  E  V  Y  S  H  C  G  K  H  N  T  C  Y  N  *  S   : G  F  F  S  L  Q  S  L  L  V  M  Y  F  I  T  N  Q  F  E  :  P  K  E  G  L  A  F  S  G  R  D  S  A  E  N  H  P  C  A  I  Q  C  L  L  Q  N  C  *  Y  *  K  :  *  G  *  R  A  L  H  M  Y  L  S  F  S  I  A  K  I  V  Q  W  V  W  D  S  T  D  L  P  *  Q  I  E  C  K  *  W  F  I  Q  A  L  R  I  H  F  R  S  *  F  L  R  N  E  R  I  K  A  Q  I  D  G  *  E  I  *  * </first_frame>
            <second_frame>  K  Y  D  Q  S  S  T  P  S  C  G  D  G  V  F  F  C  *  K  :  A  K  C  E  K  E  T  C  *  H  L  E  *  Q  I  R  S  S  R  G  D  M  H  R  S  T  R  W  A  V  K  R  R :   A  V  L  E  E  E  Q  I  I  L  R  I  R  I  L  Y  *  V  S  L  L  A  C  C  I  S  L  V  P  D  T  I  D  K  N  C  I  K  G  A  K  V  L  E  Q  V  D  K  K  F  I  P  I  V  A  S  T  T  P  A  I  I  D  Q  :  D  F  S  L  C  S  H  C  W  *  C  I  L  *  R  T  S  S  N :   Q  K  K  V  L  H  S  L  E  E  T  L  L  R  I  T  L  V  Q  S  S  V  S  F  K  I  A  D  I  E  S :   E  D  D  V  L  C  T  C  T  S  H  S  P  L  P  K  L  S  S  G  F  G  I  Q  L  T  S  L  N  K  L  N  A  S  D  G  S  F  K  L  S  G  Y  I  S  G  P  D  F  Y  A  M  S  V  *  R  P  K  L  M  D  K  R  F  D   </second_frame>
            <third_frame>   S  M  I  N  L  P  P  Q  V  V  G  T  V  Y  F  S  V  E  R :   P  N  V  K  R  K  L  V  N  I  W  N  S  K  L  E  A  Q  G  G  T  C  T  G  P  H  D  G  Q  S  K  E   : E  R  Y  W  K  R  N  R  *  S  *  E  S  G  Y  Y  T  E  C  H  F  W  R  V  A  F  H  W  F  L  I  P  L  I  K  T  A  L  R  V  P  K  F  S  N  R  L  I  R  S  L  F  P  L  W  Q  A  Q  H  L  L  *  L  I  R :   I  F  L  F  A  V  I  V  G  D  V  F  Y  N  E  P  V  R   : T  K  R  R  S  C  I  L  W  K  R  L  C  *  E  S  P  L  C  N  P  V  S  P  S  K  L  L  I  L  K   : V  R  M  T  C  F  A  H  V  P  L  I  L  H  C  Q  N  C  P  V  G  L  G  F  N  *  P  P  L  T  N  *  M  Q  V  M  V  H  S  S  S  Q  D  T  F  Q  V  L  I  F  T  Q  *  A  Y  K  G  P  N  *  W  I  R  D  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97031" stop="97044"/>
                    <exon start="97159" stop="97251"/>
                    <exon start="97331" stop="97496"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTSSNQKKVLHSLEETLLRITLVQSSVSFKIADIESEDDVLCTCTSHSPLPKLSSGFGIQLTSLNKLNASDGSFKLSGYISGPDFYAMSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="98323" PGL_stop="99570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98323" e_stop="98407"/>
            <exon e_start="98498" e_stop="98551"/>
            <exon e_start="98905" e_stop="99545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.595" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98323" e_stop="98407" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.595" acc_prob="0.987">
            <gDNA_intron_boundary i_start="98408" i_stop="98497" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98498" e_stop="98551" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98552" i_stop="98904" i_length="353"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98905" e_stop="99545" e_length="641"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98323" stop="98407"/>
              <exon start="98498" stop="98551"/>
              <exon start="98905" stop="99437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98323" stop="98407"/>
              <exon start="98498" stop="98551"/>
              <exon start="98905" stop="99337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98323" stop="98407"/>
              <exon start="98498" stop="98551"/>
              <exon start="98905" stop="99292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98324" stop="98407"/>
              <exon start="98498" stop="98551"/>
              <exon start="98905" stop="99141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98330" stop="98407"/>
              <exon start="98498" stop="98551"/>
              <exon start="98905" stop="99209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98989" stop="99545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGGTTCATTTTTTTTCCATGTGAGATTTGCAATCAAATTGGCTGAAATGATGTGTAGCATTTTACTCTCTGTTGGCACCATTG : GATTGGCACCTCGTCCTTCTCTTTATTGAGGATCCTGTCACGAATCTCTGGACT : ATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTTTGTCAAGATATCCAGAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAGTAGTTGGAGTAGTTCATTCCGAATTTTTCATATTTATAATTTTGACAATACTCCGGTAAGTTTTTTAGTCTTATTCGATAACCATAGCATACTATAACAGGATTTCTACTTTGTAATTTTATTACTACGAATATTTATTTTGTGAAATAA</gDNA_template>
            <first_frame> T  G  S  F  F  F  H  V  R  F  A  I  K  L  A  E  M  M  C  S  I  L  L  S  V  G  T  I   : G  L  A  P  R  P  S  L  Y  *  G  S  C  H  E  S  L  D   : Y  I  L  E  I  S  E  G  R  Y  R  A  Q  S  C  K  A  T  L  E  L  L  S  P  L  P  K  K  L  T  G  E  C  S  V  R  E  I  F  N  L  L  L  I  F  C  G  E  V  L  W  V  Q  I  P  L  S  D  *  K  F  S  S  Q  S  I  M  D  L  L  L  I  A  Q  P  V  *  T  G  D  L  L  M  M  E  H  L  L  I  L  M  K  I  Y  *  V  *  K  S  D  *  S  T  K  Q  S  C  L  G  D  G  V  E  H  K  A  V  D  N  I  Y  Q  I  L  Y  Q  K  I  L  K  I  I  Q  V  Q  N  *  G  I  A  E  V  K  N  F  V  K  I  S  R  K  I  F  I  D  Q  G  H  L  M  D  H  K  *  *  L  E  *  F  I  P  N  F  S  Y  L  *  F  *  Q  Y  S  G  K  F  F  S  L  I  R  *  P  *  H  T  I  T  G  F  L  L  C  N  F  I  T  T  N  I  Y  F  V  K  * </first_frame>
            <second_frame>  L  V  H  F  F  S  M  *  D  L  Q  S  N  W  L  K  *  C  V  A  F  Y  S  L  L  A  P  L  :  D  W  H  L  V  L  L  F  I  E  D  P  V  T  N  L  W  T  :  I  F  L  R  S  V  K  A  G  I  E  L  R  V  A  K  L  H  L  N  F  F  P  H  C  Q  R  N  *  L  E  S  A  L  S  E  R  Y  S  I  F  F  *  Y  S  V  G  K  C  S  G  S  R  F  L  C  Q  I  E  S  F  Q  V  S  Q  S  W  I  S  C  S  L  H  S  R  C  K  L  E  I  C  *  *  W  N  I  F  *  Y  *  *  R  Y  I  K  F  E  K  V  T  R  V  L  N  K  V  A  L  E  M  V  L  N  I  K  Q  L  I  I  F  T  R  Y  Y  I  K  R  F  *  K  L  S  R  C  K  T  K  A  L  Q  K  S  K  I  L  S  R  Y  P  E  K  S  S  L  T  K  D  I  L  W  I  I  N  S  S  W  S  S  S  F  R  I  F  H  I  Y  N  F  D  N  T  P  V  S  F  L  V  L  F  D  N  H  S  I  L  *  Q  D  F  Y  F  V  I  L  L  L  R  I  F  I  L  *  N   </second_frame>
            <third_frame>   W  F  I  F  F  P  C  E  I  C  N  Q  I  G  *  N  D  V  *  H  F  T  L  C  W  H  H  W :   I  G  T  S  S  F  S  L  L  R  I  L  S  R  I  S  G  L :   Y  S  *  D  Q  *  R  Q  V  *  S  S  E  L  Q  S  Y  T  *  T  S  F  P  T  A  K  E  T  D  W  R  V  L  C  Q  R  D  I  Q  S  S  S  D  I  L  W  G  S  A  L  G  P  D  S  S  V  R  L  K  V  F  K  S  V  N  H  G  S  L  A  H  C  T  A  G  V  N  W  R  S  V  D  D  G  T  S  F  D  I  D  E  D  I  L  S  L  K  K  *  L  E  Y  *  T  K  L  P  W  R  W  C  *  T  *  S  S  *  *  Y  L  P  D  T  I  S  K  D  F  E  N  Y  P  G  A  K  L  R  H  C  R  S  Q  K  F  C  Q  D  I  Q  K  N  L  H  *  P  R  T  S  Y  G  S  *  I  V  V  G  V  V  H  S  E  F  F  I  F  I  I  L  T  I  L  R  *  V  F  *  S  Y  S  I  T  I  A  Y  Y  N  R  I  S  T  L  *  F  Y  Y  Y  E  Y  L  F  C  E  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98963" stop="99202"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSFPTAKETDWRVLCQRDIQSSSDILWGSALGPDSSVRLKVFKSVNHGSLAHCTAGVNWRSVDDGTSFDIDEDILSLKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98527" stop="98551"/>
                    <exon start="98905" stop="99080"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSCHESLDYILEISEGRYRAQSCKATLELLSPLPKKLTGECSVREIFNLLLIFCGEVLWVQIPLSD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99292" stop="99492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSRCKTKALQKSKILSRYPEKSSLTKDILWIINSSWSSSFRIFHIYNFDNTPVSFLVLFDNHSIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98890" e_stop="99545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="98890" e_stop="99545" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98890" stop="99529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98989" stop="99545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCTCCCCTTCCAGATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTTTGTCAAGATATCCAGAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAGTAGTTGGAGTAGTTCATTCCGAATTTTTCATATTTATAATTTTGACAATACTCCGGTAAGTTTTTTAGTCTTATTCGATAACCATAGCATACTATAACAGGATTTCTACTTTGTAATTTTATTACTACGAATATTTATTTTGTGAAATAA</gDNA_template>
            <first_frame> L  L  P  F  Q  I  F  L  R  S  V  K  A  G  I  E  L  R  V  A  K  L  H  L  N  F  F  P  H  C  Q  R  N  *  L  E  S  A  L  S  E  R  Y  S  I  F  F  *  Y  S  V  G  K  C  S  G  S  R  F  L  C  Q  I  E  S  F  Q  V  S  Q  S  W  I  S  C  S  L  H  S  R  C  K  L  E  I  C  *  *  W  N  I  F  *  Y  *  *  R  Y  I  K  F  E  K  V  T  R  V  L  N  K  V  A  L  E  M  V  L  N  I  K  Q  L  I  I  F  T  R  Y  Y  I  K  R  F  *  K  L  S  R  C  K  T  K  A  L  Q  K  S  K  I  L  S  R  Y  P  E  K  S  S  L  T  K  D  I  L  W  I  I  N  S  S  W  S  S  S  F  R  I  F  H  I  Y  N  F  D  N  T  P  V  S  F  L  V  L  F  D  N  H  S  I  L  *  Q  D  F  Y  F  V  I  L  L  L  R  I  F  I  L  *  N   </first_frame>
            <second_frame>  C  S  P  S  R  Y  S  *  D  Q  *  R  Q  V  *  S  S  E  L  Q  S  Y  T  *  T  S  F  P  T  A  K  E  T  D  W  R  V  L  C  Q  R  D  I  Q  S  S  S  D  I  L  W  G  S  A  L  G  P  D  S  S  V  R  L  K  V  F  K  S  V  N  H  G  S  L  A  H  C  T  A  G  V  N  W  R  S  V  D  D  G  T  S  F  D  I  D  E  D  I  L  S  L  K  K  *  L  E  Y  *  T  K  L  P  W  R  W  C  *  T  *  S  S  *  *  Y  L  P  D  T  I  S  K  D  F  E  N  Y  P  G  A  K  L  R  H  C  R  S  Q  K  F  C  Q  D  I  Q  K  N  L  H  *  P  R  T  S  Y  G  S  *  I  V  V  G  V  V  H  S  E  F  F  I  F  I  I  L  T  I  L  R  *  V  F  *  S  Y  S  I  T  I  A  Y  Y  N  R  I  S  T  L  *  F  Y  Y  Y  E  Y  L  F  C  E  I  </second_frame>
            <third_frame>   A  P  L  P  D  I  L  E  I  S  E  G  R  Y  R  A  Q  S  C  K  A  T  L  E  L  L  S  P  L  P  K  K  L  T  G  E  C  S  V  R  E  I  F  N  L  L  L  I  F  C  G  E  V  L  W  V  Q  I  P  L  S  D  *  K  F  S  S  Q  S  I  M  D  L  L  L  I  A  Q  P  V  *  T  G  D  L  L  M  M  E  H  L  L  I  L  M  K  I  Y  *  V  *  K  S  D  *  S  T  K  Q  S  C  L  G  D  G  V  E  H  K  A  V  D  N  I  Y  Q  I  L  Y  Q  K  I  L  K  I  I  Q  V  Q  N  *  G  I  A  E  V  K  N  F  V  K  I  S  R  K  I  F  I  D  Q  G  H  L  M  D  H  K  *  *  L  E  *  F  I  P  N  F  S  Y  L  *  F  *  Q  Y  S  G  K  F  F  S  L  I  R  *  P  *  H  T  I  T  G  F  L  L  C  N  F  I  T  T  N  I  Y  F  V  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98963" stop="99202"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSFPTAKETDWRVLCQRDIQSSSDILWGSALGPDSSVRLKVFKSVNHGSLAHCTAGVNWRSVDDGTSFDIDEDILSLKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99292" stop="99492"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSRCKTKALQKSKILSRYPEKSSLTKDILWIINSSWSSSFRIFHIYNFDNTPVSFLVLFDNHSIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="98528" e_stop="98561"/>
            <exon e_start="98905" e_stop="99570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98528" e_stop="98561" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98562" i_stop="98904" i_length="343"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98905" e_stop="99570" e_length="666"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98528" stop="98561"/>
              <exon start="98905" stop="99570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98989" stop="99545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCCTGTCACGAATCTCTGGACTGTAAGTACCG : ATATTCTTGAGATCAGTGAAGGCAGGTATAGAGCTCAGAGTTGCAAAGCTACACTTGAACTTCTTTCCCCACTGCCAAAGAAACTGACTGGAGAGTGCTCTGTCAGAGAGATATTCAATCTTCTTCTGATATTCTGTGGGGAAGTGCTCTGGGTCCAGATTCCTCTGTCAGATTGAAAGTTTTCAAGTCAGTCAATCATGGATCTCTTGCTCATTGCACAGCCGGTGTAAACTGGAGATCTGTTGATGATGGAACATCTTTTGATATTGATGAAGATATATTAAGTTTGAAAAAGTGACTAGAGTACTAAACAAAGTTGCCTTGGAGATGGTGTTGAACATAAAGCAGTTGATAATATTTACCAGATACTATATCAAAAGATTTTGAAAATTATCCAGGTGCAAAACTAAGGCATTGCAGAAGTCAAAAATTTTGTCAAGATATCCAGAAAAATCTTCATTGACCAAGGACATCTTATGGATCATAAATAGTAGTTGGAGTAGTTCATTCCGAATTTTTCATATTTATAATTTTGACAATACTCCGGTAAGTTTTTTAGTCTTATTCGATAACCATAGCATACTATAACAGGATTTCTACTTTGTAATTTTATTACTACGAATATTTATTTTGTGAAATAAGTTGTTTGGACCGATTTTTAAGCAA</gDNA_template>
            <first_frame> D  P  V  T  N  L  W  T  V  S  T   : D  I  L  E  I  S  E  G  R  Y  R  A  Q  S  C  K  A  T  L  E  L  L  S  P  L  P  K  K  L  T  G  E  C  S  V  R  E  I  F  N  L  L  L  I  F  C  G  E  V  L  W  V  Q  I  P  L  S  D  *  K  F  S  S  Q  S  I  M  D  L  L  L  I  A  Q  P  V  *  T  G  D  L  L  M  M  E  H  L  L  I  L  M  K  I  Y  *  V  *  K  S  D  *  S  T  K  Q  S  C  L  G  D  G  V  E  H  K  A  V  D  N  I  Y  Q  I  L  Y  Q  K  I  L  K  I  I  Q  V  Q  N  *  G  I  A  E  V  K  N  F  V  K  I  S  R  K  I  F  I  D  Q  G  H  L  M  D  H  K  *  *  L  E  *  F  I  P  N  F  S  Y  L  *  F  *  Q  Y  S  G  K  F  F  S  L  I  R  *  P  *  H  T  I  T  G  F  L  L  C  N  F  I  T  T  N  I  Y  F  V  K  *  V  V  W  T  D  F  *  A  </first_frame>
            <second_frame>  I  L  S  R  I  S  G  L  *  V  P  :  I  F  L  R  S  V  K  A  G  I  E  L  R  V  A  K  L  H  L  N  F  F  P  H  C  Q  R  N  *  L  E  S  A  L  S  E  R  Y  S  I  F  F  *  Y  S  V  G  K  C  S  G  S  R  F  L  C  Q  I  E  S  F  Q  V  S  Q  S  W  I  S  C  S  L  H  S  R  C  K  L  E  I  C  *  *  W  N  I  F  *  Y  *  *  R  Y  I  K  F  E  K  V  T  R  V  L  N  K  V  A  L  E  M  V  L  N  I  K  Q  L  I  I  F  T  R  Y  Y  I  K  R  F  *  K  L  S  R  C  K  T  K  A  L  Q  K  S  K  I  L  S  R  Y  P  E  K  S  S  L  T  K  D  I  L  W  I  I  N  S  S  W  S  S  S  F  R  I  F  H  I  Y  N  F  D  N  T  P  V  S  F  L  V  L  F  D  N  H  S  I  L  *  Q  D  F  Y  F  V  I  L  L  L  R  I  F  I  L  *  N  K  L  F  G  P  I  F  K  Q </second_frame>
            <third_frame>   S  C  H  E  S  L  D  C  K  Y  R :   Y  S  *  D  Q  *  R  Q  V  *  S  S  E  L  Q  S  Y  T  *  T  S  F  P  T  A  K  E  T  D  W  R  V  L  C  Q  R  D  I  Q  S  S  S  D  I  L  W  G  S  A  L  G  P  D  S  S  V  R  L  K  V  F  K  S  V  N  H  G  S  L  A  H  C  T  A  G  V  N  W  R  S  V  D  D  G  T  S  F  D  I  D  E  D  I  L  S  L  K  K  *  L  E  Y  *  T  K  L  P  W  R  W  C  *  T  *  S  S  *  *  Y  L  P  D  T  I  S  K  D  F  E  N  Y  P  G  A  K  L  R  H  C  R  S  Q  K  F  C  Q  D  I  Q  K  N  L  H  *  P  R  T  S  Y  G  S  *  I  V  V  G  V  V  H  S  E  F  F  I  F  I  I  L  T  I  L  R  *  V  F  *  S  Y  S  I  T  I  A  Y  Y  N  R  I  S  T  L  *  F  Y  Y  Y  E  Y  L  F  C  E  I  S  C  L  D  R  F  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98963" stop="99202"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSFPTAKETDWRVLCQRDIQSSSDILWGSALGPDSSVRLKVFKSVNHGSLAHCTAGVNWRSVDDGTSFDIDEDILSLKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98528" stop="98561"/>
                    <exon start="98905" stop="99080"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPVTNLWTVSTDILEISEGRYRAQSCKATLELLSPLPKKLTGECSVREIFNLLLIFCGEVLWVQIPLSD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99292" stop="99492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSRCKTKALQKSKILSRYPEKSSLTKDILWIINSSWSSSFRIFHIYNFDNTPVSFLVLFDNHSIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="100271" PGL_stop="102532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100277" e_stop="100302"/>
            <exon e_start="100407" e_stop="100487"/>
            <exon e_start="100597" e_stop="100716"/>
            <exon e_start="100817" e_stop="100954"/>
            <exon e_start="101569" e_stop="101667"/>
            <exon e_start="101776" e_stop="102079"/>
            <exon e_start="102446" e_stop="102532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.609" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.809" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100277" e_stop="100302" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100303" i_stop="100406" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100407" e_stop="100487" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.993">
            <gDNA_intron_boundary i_start="100488" i_stop="100596" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100597" e_stop="100716" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100717" i_stop="100816" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100817" e_stop="100954" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="100955" i_stop="101568" i_length="614"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101569" e_stop="101667" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.609" acc_prob="0.977">
            <gDNA_intron_boundary i_start="101668" i_stop="101775" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101776" e_stop="102079" e_length="304"/>
          </exon>
          <intron i_serial="6" don_prob="0.809" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102080" i_stop="102445" i_length="366"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102446" e_stop="102532" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100277" stop="100302"/>
              <exon start="100407" stop="100487"/>
              <exon start="100597" stop="100715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100618" stop="100716"/>
              <exon start="100817" stop="100954"/>
              <exon start="101569" stop="101667"/>
              <exon start="101776" stop="102079"/>
              <exon start="102446" stop="102532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100618" stop="100716"/>
              <exon start="100817" stop="100954"/>
              <exon start="101569" stop="101667"/>
              <exon start="101776" stop="101867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACCTCAGAGCCTACATGATGAAG : GAGATCATCCGTCTACCTATGAAGTTTCTTATTCTCTGTATCACCGTTTCTATCTTATTCCAACATTGTTCTTGCCTAAAG : ATTGGAGAAACTTGTACCGACAGTAATTGTGATGAAGGATTAGTATGCTCTACTTGTCCTGCTAATGGCAATACCCGACCCAGATGTACTCGCATTCAACCCACTATTCCTACCACCAAG : GTAAAAGGTTTGCCATTCAACAAGTATTCGTGGCTGACGACCCACAACTCCTTTGCAATTTCCGGGTCAACATCTGCAACTGGGTCTGATATTCTTGCTCCGACCAACCAGGAAGATTCCATTACTAATCAGCTCAAG : AATGGCGTTCGAGGACTTATGCTTGATATGTATGATTTCAACAATGACATCTGGCTTTGTCACTCATTTGGTGGGAAGTGTTACAATGTTACATCATTT : CAACCTGCAATCAATTCACTGAAAGAAATTCAAGGGTTCCTCGAAAAGAACCCATCAGAGGTCGTCACAATCTTCATTGAAGACTATGTCTCAACCCCAAAGGCCTTGAGCAAGGTTTTTAATGATTCTGGTCTTAATAAGTACTGGTTTCCAATTTCTCGTATGCCCAAAAAAGGAGAAGATTGGCCTACAGTGGATGACATGGTCAAGCAGAATCAACGTCTTGTAGTCTTCACCTCTAAATCATCAAAGGAGGCTTCTGATGGCATTGCTTATGAGTGGAGATACGTTGTAGAAAACCAAT : ATGGAAATGACGGGATGAAAGAAGGTTCTTGTCCAAGTCGTTCTGAATCATCTGCTTTGAGTACATCGGGAATCTCTTTGGTTCTGC</gDNA_template>
            <first_frame> R  T  S  E  P  T  *  *  R :   R  S  S  V  Y  L  *  S  F  L  F  S  V  S  P  F  L  S  Y  S  N  I  V  L  A  *  R :   L  E  K  L  V  P  T  V  I  V  M  K  D  *  Y  A  L  L  V  L  L  M  A  I  P  D  P  D  V  L  A  F  N  P  L  F  L  P  P  R :   *  K  V  C  H  S  T  S  I  R  G  *  R  P  T  T  P  L  Q  F  P  G  Q  H  L  Q  L  G  L  I  F  L  L  R  P  T  R  K  I  P  L  L  I  S  S  R :   M  A  F  E  D  L  C  L  I  C  M  I  S  T  M  T  S  G  F  V  T  H  L  V  G  S  V  T  M  L  H  H  F :   N  L  Q  S  I  H  *  K  K  F  K  G  S  S  K  R  T  H  Q  R  S  S  Q  S  S  L  K  T  M  S  Q  P  Q  R  P  *  A  R  F  L  M  I  L  V  L  I  S  T  G  F  Q  F  L  V  C  P  K  K  E  K  I  G  L  Q  W  M  T  W  S  S  R  I  N  V  L  *  S  S  P  L  N  H  Q  R  R  L  L  M  A  L  L  M  S  G  D  T  L  *  K  T  N  :  M  E  M  T  G  *  K  K  V  L  V  Q  V  V  L  N  H  L  L  *  V  H  R  E  S  L  W  F  C </first_frame>
            <second_frame>  E  P  Q  S  L  H  D  E   : G  D  H  P  S  T  Y  E  V  S  Y  S  L  Y  H  R  F  Y  L  I  P  T  L  F  L  P  K   : D  W  R  N  L  Y  R  Q  *  L  *  *  R  I  S  M  L  Y  L  S  C  *  W  Q  Y  P  T  Q  M  Y  S  H  S  T  H  Y  S  Y  H  Q   : G  K  R  F  A  I  Q  Q  V  F  V  A  D  D  P  Q  L  L  C  N  F  R  V  N  I  C  N  W  V  *  Y  S  C  S  D  Q  P  G  R  F  H  Y  *  S  A  Q   : E  W  R  S  R  T  Y  A  *  Y  V  *  F  Q  Q  *  H  L  A  L  S  L  I  W  W  E  V  L  Q  C  Y  I  I   : S  T  C  N  Q  F  T  E  R  N  S  R  V  P  R  K  E  P  I  R  G  R  H  N  L  H  *  R  L  C  L  N  P  K  G  L  E  Q  G  F  *  *  F  W  S  *  *  V  L  V  S  N  F  S  Y  A  Q  K  R  R  R  L  A  Y  S  G  *  H  G  Q  A  E  S  T  S  C  S  L  H  L  *  I  I  K  G  G  F  *  W  H  C  L  *  V  E  I  R  C  R  K  P  I :   W  K  *  R  D  E  R  R  F  L  S  K  S  F  *  I  I  C  F  E  Y  I  G  N  L  F  G  S   </second_frame>
            <third_frame>   N  L  R  A  Y  M  M  K  :  E  I  I  R  L  P  M  K  F  L  I  L  C  I  T  V  S  I  L  F  Q  H  C  S  C  L  K  :  I  G  E  T  C  T  D  S  N  C  D  E  G  L  V  C  S  T  C  P  A  N  G  N  T  R  P  R  C  T  R  I  Q  P  T  I  P  T  T  K  :  V  K  G  L  P  F  N  K  Y  S  W  L  T  T  H  N  S  F  A  I  S  G  S  T  S  A  T  G  S  D  I  L  A  P  T  N  Q  E  D  S  I  T  N  Q  L  K  :  N  G  V  R  G  L  M  L  D  M  Y  D  F  N  N  D  I  W  L  C  H  S  F  G  G  K  C  Y  N  V  T  S  F  :  Q  P  A  I  N  S  L  K  E  I  Q  G  F  L  E  K  N  P  S  E  V  V  T  I  F  I  E  D  Y  V  S  T  P  K  A  L  S  K  V  F  N  D  S  G  L  N  K  Y  W  F  P  I  S  R  M  P  K  K  G  E  D  W  P  T  V  D  D  M  V  K  Q  N  Q  R  L  V  V  F  T  S  K  S  S  K  E  A  S  D  G  I  A  Y  E  W  R  Y  V  V  E  N  Q   : Y  G  N  D  G  M  K  E  G  S  C  P  S  R  S  E  S  S  A  L  S  T  S  G  I  S  L  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100279" stop="100302"/>
                    <exon start="100407" stop="100487"/>
                    <exon start="100597" stop="100716"/>
                    <exon start="100817" stop="100954"/>
                    <exon start="101569" stop="101667"/>
                    <exon start="101776" stop="102079"/>
                    <exon start="102446" stop="102531"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLRAYMMKEIIRLPMKFLILCITVSILFQHCSCLKIGETCTDSNCDEGLVCSTCPANGNTRPRCTRIQPTIPTTKVKGLPFNKYSWLTTHNSFAISGSTSATGSDILAPTNQEDSITNQLKNGVRGLMLDMYDFNNDIWLCHSFGGKCYNVTSFQPAINSLKEIQGFLEKNPSEVVTIFIEDYVSTPKALSKVFNDSGLNKYWFPISRMPKKGEDWPTVDDMVKQNQRLVVFTSKSSKEASDGIAYEWRYVVENQYGNDGMKEGSCPSRSESSALSTSGISLVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100271" e_stop="100302"/>
            <exon e_start="100407" e_stop="100487"/>
            <exon e_start="100597" e_stop="100716"/>
            <exon e_start="100817" e_stop="101029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100271" e_stop="100302" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100303" i_stop="100406" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100407" e_stop="100487" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.993">
            <gDNA_intron_boundary i_start="100488" i_stop="100596" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100597" e_stop="100716" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100717" i_stop="100816" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.939">
            <gDNA_exon_boundary e_start="100817" e_stop="101029" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100271" stop="100302"/>
              <exon start="100407" stop="100487"/>
              <exon start="100597" stop="100716"/>
              <exon start="100817" stop="101029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100277" stop="100302"/>
              <exon start="100407" stop="100487"/>
              <exon start="100597" stop="100715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGAAGAACCTCAGAGCCTACATGATGAAG : GAGATCATCCGTCTACCTATGAAGTTTCTTATTCTCTGTATCACCGTTTCTATCTTATTCCAACATTGTTCTTGCCTAAAG : ATTGGAGAAACTTGTACCGACAGTAATTGTGATGAAGGATTAGTATGCTCTACTTGTCCTGCTAATGGCAATACCCGACCCAGATGTACTCGCATTCAACCCACTATTCCTACCACCAAG : GTAAAAGGTTTGCCATTCAACAAGTATTCGTGGCTGACGACCCACAACTCCTTTGCAATTTCCGGGTCAACATCTGCAACTGGGTCTGATATTCTTGCTCCGACCAACCAGGAAGATTCCATTACTAATCAGCTCAAGGTGATTTTCTCTTTCTCTAATTATGAATTGAATATTTGAGGAATTTTAGTAGTTCAATTGATTGACTAGCTAAAT</gDNA_template>
            <first_frame> E  R  R  T  S  E  P  T  *  *  R :   R  S  S  V  Y  L  *  S  F  L  F  S  V  S  P  F  L  S  Y  S  N  I  V  L  A  *  R :   L  E  K  L  V  P  T  V  I  V  M  K  D  *  Y  A  L  L  V  L  L  M  A  I  P  D  P  D  V  L  A  F  N  P  L  F  L  P  P  R :   *  K  V  C  H  S  T  S  I  R  G  *  R  P  T  T  P  L  Q  F  P  G  Q  H  L  Q  L  G  L  I  F  L  L  R  P  T  R  K  I  P  L  L  I  S  S  R  *  F  S  L  S  L  I  M  N  *  I  F  E  E  F  *  *  F  N  *  L  T  S  *   </first_frame>
            <second_frame>  R  E  E  P  Q  S  L  H  D  E   : G  D  H  P  S  T  Y  E  V  S  Y  S  L  Y  H  R  F  Y  L  I  P  T  L  F  L  P  K   : D  W  R  N  L  Y  R  Q  *  L  *  *  R  I  S  M  L  Y  L  S  C  *  W  Q  Y  P  T  Q  M  Y  S  H  S  T  H  Y  S  Y  H  Q   : G  K  R  F  A  I  Q  Q  V  F  V  A  D  D  P  Q  L  L  C  N  F  R  V  N  I  C  N  W  V  *  Y  S  C  S  D  Q  P  G  R  F  H  Y  *  S  A  Q  G  D  F  L  F  L  *  L  *  I  E  Y  L  R  N  F  S  S  S  I  D  *  L  A  K  </second_frame>
            <third_frame>   E  K  N  L  R  A  Y  M  M  K  :  E  I  I  R  L  P  M  K  F  L  I  L  C  I  T  V  S  I  L  F  Q  H  C  S  C  L  K  :  I  G  E  T  C  T  D  S  N  C  D  E  G  L  V  C  S  T  C  P  A  N  G  N  T  R  P  R  C  T  R  I  Q  P  T  I  P  T  T  K  :  V  K  G  L  P  F  N  K  Y  S  W  L  T  T  H  N  S  F  A  I  S  G  S  T  S  A  T  G  S  D  I  L  A  P  T  N  Q  E  D  S  I  T  N  Q  L  K  V  I  F  S  F  S  N  Y  E  L  N  I  *  G  I  L  V  V  Q  L  I  D  *  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100273" stop="100302"/>
                    <exon start="100407" stop="100487"/>
                    <exon start="100597" stop="100716"/>
                    <exon start="100817" stop="100993"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKNLRAYMMKEIIRLPMKFLILCITVSILFQHCSCLKIGETCTDSNCDEGLVCSTCPANGNTRPRCTRIQPTIPTTKVKGLPFNKYSWLTTHNSFAISGSTSATGSDILAPTNQEDSITNQLKVIFSFSNYELNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="103373" PGL_stop="103086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103373" e_stop="103086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="103373" e_stop="103086" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103373" stop="103086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTTTCCGTTTCATTTCATTGTGCCATTATGTGTCTATACACATTTTAATTGTAAAACAAATCAATCTCCGATAAGTGAAGAAACTCAACCAGTAAACACAAGATAAATAAAAAATAAATAAAAGATAAGGAGGATCGTGTCATTCTGCTCCCGTGTTATGAAGTGTGTGTCTGGTCTGAAAATTTGAGTAGAGACTTTGGAGAATGCAGAATTATACGTGGATAAGAAGAATCGCGGCAAAAATTGTGCAAATCAACCAATGAAGTGGTTTACTTCTGTTTGAA</gDNA_template>
            <first_frame> S  I  F  R  F  I  S  L  C  H  Y  V  S  I  H  I  L  I  V  K  Q  I  N  L  R  *  V  K  K  L  N  Q  *  T  Q  D  K  *  K  I  N  K  R  *  G  G  S  C  H  S  A  P  V  L  *  S  V  C  L  V  *  K  F  E  *  R  L  W  R  M  Q  N  Y  T  W  I  R  R  I  A  A  K  I  V  Q  I  N  Q  *  S  G  L  L  L  F  E </first_frame>
            <second_frame>  Q  F  S  V  S  F  H  C  A  I  M  C  L  Y  T  F  *  L  *  N  K  S  I  S  D  K  *  R  N  S  T  S  K  H  K  I  N  K  K  *  I  K  D  K  E  D  R  V  I  L  L  P  C  Y  E  V  C  V  W  S  E  N  L  S  R  D  F  G  E  C  R  I  I  R  G  *  E  E  S  R  Q  K  L  C  K  S  T  N  E  V  V  Y  F  C  L   </second_frame>
            <third_frame>   N  F  P  F  H  F  I  V  P  L  C  V  Y  T  H  F  N  C  K  T  N  Q  S  P  I  S  E  E  T  Q  P  V  N  T  R  *  I  K  N  K  *  K  I  R  R  I  V  S  F  C  S  R  V  M  K  C  V  S  G  L  K  I  *  V  E  T  L  E  N  A  E  L  Y  V  D  K  K  N  R  G  K  N  C  A  N  Q  P  M  K  W  F  T  S  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0064B17.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="114510" PGL_stop="117351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114510" e_stop="114532"/>
            <exon e_start="114625" e_stop="114670"/>
            <exon e_start="115177" e_stop="115290"/>
            <exon e_start="115373" e_stop="115456"/>
            <exon e_start="115554" e_stop="115667"/>
            <exon e_start="115778" e_stop="115867"/>
            <exon e_start="115952" e_stop="116028"/>
            <exon e_start="116336" e_stop="116552"/>
            <exon e_start="117100" e_stop="117153"/>
            <exon e_start="117238" e_stop="117351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.181" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.863" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114510" e_stop="114532" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="114533" i_stop="114624" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114625" e_stop="114670" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114671" i_stop="115176" i_length="506"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115177" e_stop="115290" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.951">
            <gDNA_intron_boundary i_start="115291" i_stop="115372" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115373" e_stop="115456" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="115457" i_stop="115553" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115554" e_stop="115667" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.864" acc_prob="0.181">
            <gDNA_intron_boundary i_start="115668" i_stop="115777" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="115778" e_stop="115867" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.947">
            <gDNA_intron_boundary i_start="115868" i_stop="115951" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="115952" e_stop="116028" e_length="77"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="116029" i_stop="116335" i_length="307"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="116336" e_stop="116552" e_length="217"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.829">
            <gDNA_intron_boundary i_start="116553" i_stop="117099" i_length="547"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="117100" e_stop="117153" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.863">
            <gDNA_intron_boundary i_start="117154" i_stop="117237" i_length="84"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="117238" e_stop="117351" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114510" stop="114532"/>
              <exon start="114625" stop="114670"/>
              <exon start="115177" stop="115290"/>
              <exon start="115373" stop="115456"/>
              <exon start="115554" stop="115667"/>
              <exon start="115778" stop="115867"/>
              <exon start="115952" stop="116028"/>
              <exon start="116336" stop="116550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115808" stop="115867"/>
              <exon start="115952" stop="116028"/>
              <exon start="116336" stop="116552"/>
              <exon start="117100" stop="117153"/>
              <exon start="117238" stop="117299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115848" stop="115867"/>
              <exon start="115952" stop="116028"/>
              <exon start="116336" stop="116552"/>
              <exon start="117100" stop="117153"/>
              <exon start="117238" stop="117351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGCCAAATACTGTCCGGCGG : GTCCTGTGAAGATGTCATTGAATCAATACATAATGCACTTATGAAG : GTACAAGAGCAAATGAGGACTGGCCAAATTGAGCTGGAAAAATACGTGATCACCAAATCATTGACTAAACCTCCTGAAGCCTATCCTGATGCTAAAAGTCAACCTCACGTTGAA : GTAGCACTCAGGTTGAAGAAAAGTGGCTATGTTACTGGTTGCTCTGCTGGTGATACAGTACCATATGTCATCTGTTGTGAACAG : GGTAATGGTTCAACTACCTCTGTGGGAATTGCTCAGCGGGCAAGACATCCTGATGAACTGAAAAGAGACAATGGAAACTGGATAGTAGACATTGATTATTACCTTGCCCAACAG : ATACATCCTGTAATATCCCGTCTATGTGCGTCAATTCAGGGTACTAGCCCAGCACGTCTGGCTGATTGCTTAGGACTAGATTCATCCAAG : TTCCAAAATAAATCAAGTGAAGCTGTCAATGATGATCCCTCAAATGCACTTTTATGTGTAGCTGATGATGAAGAGAG : ATTTCGGGGTTGTGAGCCTTTGACTTTGACATGCCCCAGCTGCTCCTGCTCTTTTGAGTGTGCACCTATATTTAGTTCCATATGTTCATCAATTAGGCAAAATCCAGCAGACTTGCAAGTAGGAGAGTCTGCCAGCAAAGTCTGGGAAAGATTTAGTTGTCCCAAATGCCCAGAGGAGAGTGAGGGGAATATATCTTCGGCATTGATAGCAAACCAG : GTTAAAAGGCAAGTAGAAGGCTTTATTTCAACATATTACAAAGGAGTTATGATG : TGCGATGATGAAACCTGCAACTACACCACTCGTAGCCTGAACCTGCGAGTAATTGGGGACTCAGAGAGAGGAACTGTTTGTCCAAATTATCCTCGTTGTAATGGACACTTACTA</gDNA_template>
            <first_frame> L  S  Q  I  L  S  G  G :   S  C  E  D  V  I  E  S  I  H  N  A  L  M  K  :  V  Q  E  Q  M  R  T  G  Q  I  E  L  E  K  Y  V  I  T  K  S  L  T  K  P  P  E  A  Y  P  D  A  K  S  Q  P  H  V  E  :  V  A  L  R  L  K  K  S  G  Y  V  T  G  C  S  A  G  D  T  V  P  Y  V  I  C  C  E  Q  :  G  N  G  S  T  T  S  V  G  I  A  Q  R  A  R  H  P  D  E  L  K  R  D  N  G  N  W  I  V  D  I  D  Y  Y  L  A  Q  Q  :  I  H  P  V  I  S  R  L  C  A  S  I  Q  G  T  S  P  A  R  L  A  D  C  L  G  L  D  S  S  K  :  F  Q  N  K  S  S  E  A  V  N  D  D  P  S  N  A  L  L  C  V  A  D  D  E  E  R :   F  R  G  C  E  P  L  T  L  T  C  P  S  C  S  C  S  F  E  C  A  P  I  F  S  S  I  C  S  S  I  R  Q  N  P  A  D  L  Q  V  G  E  S  A  S  K  V  W  E  R  F  S  C  P  K  C  P  E  E  S  E  G  N  I  S  S  A  L  I  A  N  Q  :  V  K  R  Q  V  E  G  F  I  S  T  Y  Y  K  G  V  M  M  :  C  D  D  E  T  C  N  Y  T  T  R  S  L  N  L  R  V  I  G  D  S  E  R  G  T  V  C  P  N  Y  P  R  C  N  G  H  L  L </first_frame>
            <second_frame>  L  A  K  Y  C  P  A   : G  P  V  K  M  S  L  N  Q  Y  I  M  H  L  *  R :   Y  K  S  K  *  G  L  A  K  L  S  W  K  N  T  *  S  P  N  H  *  L  N  L  L  K  P  I  L  M  L  K  V  N  L  T  L  K :   *  H  S  G  *  R  K  V  A  M  L  L  V  A  L  L  V  I  Q  Y  H  M  S  S  V  V  N  R :   V  M  V  Q  L  P  L  W  E  L  L  S  G  Q  D  I  L  M  N  *  K  E  T  M  E  T  G  *  *  T  L  I  I  T  L  P  N  R :   Y  I  L  *  Y  P  V  Y  V  R  Q  F  R  V  L  A  Q  H  V  W  L  I  A  *  D  *  I  H  P  S :   S  K  I  N  Q  V  K  L  S  M  M  I  P  Q  M  H  F  Y  V  *  L  M  M  K  R   : D  F  G  V  V  S  L  *  L  *  H  A  P  A  A  P  A  L  L  S  V  H  L  Y  L  V  P  Y  V  H  Q  L  G  K  I  Q  Q  T  C  K  *  E  S  L  P  A  K  S  G  K  D  L  V  V  P  N  A  Q  R  R  V  R  G  I  Y  L  R  H  *  *  Q  T  R :   L  K  G  K  *  K  A  L  F  Q  H  I  T  K  E  L  *  C :   A  M  M  K  P  A  T  T  P  L  V  A  *  T  C  E  *  L  G  T  Q  R  E  E  L  F  V  Q  I  I  L  V  V  M  D  T  Y   </second_frame>
            <third_frame>   *  P  N  T  V  R  R  :  V  L  *  R  C  H  *  I  N  T  *  C  T  Y  E   : G  T  R  A  N  E  D  W  P  N  *  A  G  K  I  R  D  H  Q  I  I  D  *  T  S  *  S  L  S  *  C  *  K  S  T  S  R  *   : S  S  T  Q  V  E  E  K  W  L  C  Y  W  L  L  C  W  *  Y  S  T  I  C  H  L  L  *  T   : G  *  W  F  N  Y  L  C  G  N  C  S  A  G  K  T  S  *  *  T  E  K  R  Q  W  K  L  D  S  R  H  *  L  L  P  C  P  T   : D  T  S  C  N  I  P  S  M  C  V  N  S  G  Y  *  P  S  T  S  G  *  L  L  R  T  R  F  I  Q   : V  P  K  *  I  K  *  S  C  Q  *  *  S  L  K  C  T  F  M  C  S  *  *  *  R  E  :  I  S  G  L  *  A  F  D  F  D  M  P  Q  L  L  L  L  F  *  V  C  T  Y  I  *  F  H  M  F  I  N  *  A  K  S  S  R  L  A  S  R  R  V  C  Q  Q  S  L  G  K  I  *  L  S  Q  M  P  R  G  E  *  G  E  Y  I  F  G  I  D  S  K  P   : G  *  K  A  S  R  R  L  Y  F  N  I  L  Q  R  S  Y  D   : V  R  *  *  N  L  Q  L  H  H  S  *  P  E  P  A  S  N  W  G  L  R  E  R  N  C  L  S  K  L  S  S  L  *  W  T  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114510" stop="114532"/>
                    <exon start="114625" stop="114670"/>
                    <exon start="115177" stop="115290"/>
                    <exon start="115373" stop="115456"/>
                    <exon start="115554" stop="115667"/>
                    <exon start="115778" stop="115867"/>
                    <exon start="115952" stop="116028"/>
                    <exon start="116336" stop="116552"/>
                    <exon start="117100" stop="117153"/>
                    <exon start="117238" stop="117351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSQILSGGSCEDVIESIHNALMKVQEQMRTGQIELEKYVITKSLTKPPEAYPDAKSQPHVEVALRLKKSGYVTGCSAGDTVPYVICCEQGNGSTTSVGIAQRARHPDELKRDNGNWIVDIDYYLAQQIHPVISRLCASIQGTSPARLADCLGLDSSKFQNKSSEAVNDDPSNALLCVADDEERFRGCEPLTLTCPSCSCSFECAPIFSSICSSIRQNPADLQVGESASKVWERFSCPKCPEESEGNISSALIANQVKRQVEGFISTYYKGVMMCDDETCNYTTRSLNLRVIGDSERGTVCPNYPRCNGHLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="125435" PGL_stop="117817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125435" e_stop="125363"/>
            <exon e_start="124487" e_stop="124368"/>
            <exon e_start="124247" e_stop="124113"/>
            <exon e_start="124032" e_stop="123971"/>
            <exon e_start="123623" e_stop="123548"/>
            <exon e_start="122656" e_stop="122555"/>
            <exon e_start="121694" e_stop="121578"/>
            <exon e_start="121274" e_stop="121216"/>
            <exon e_start="120187" e_stop="120013"/>
            <exon e_start="119423" e_stop="119289"/>
            <exon e_start="119217" e_stop="119119"/>
            <exon e_start="118974" e_stop="118866"/>
            <exon e_start="118636" e_stop="118524"/>
            <exon e_start="118289" e_stop="117817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.774" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125435" e_stop="125363" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.928">
            <gDNA_intron_boundary i_start="125362" i_stop="124488" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124487" e_stop="124368" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.774" acc_prob="0.879">
            <gDNA_intron_boundary i_start="124367" i_stop="124248" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124247" e_stop="124113" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="124112" i_stop="124033" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124032" e_stop="123971" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.992">
            <gDNA_intron_boundary i_start="123970" i_stop="123624" i_length="347"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123623" e_stop="123548" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.988">
            <gDNA_intron_boundary i_start="123547" i_stop="122657" i_length="891"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="122656" e_stop="122555" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.947" acc_prob="0.985">
            <gDNA_intron_boundary i_start="122554" i_stop="121695" i_length="860"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="121694" e_stop="121578" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121577" i_stop="121275" i_length="303"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="121274" e_stop="121216" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.996">
            <gDNA_intron_boundary i_start="121215" i_stop="120188" i_length="1028"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="120187" e_stop="120013" e_length="175"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.845">
            <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="119423" e_stop="119289" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.893" acc_prob="0.961">
            <gDNA_intron_boundary i_start="119288" i_stop="119218" i_length="71"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="119217" e_stop="119119" e_length="99"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="119118" i_stop="118975" i_length="144"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="118974" e_stop="118866" e_length="109"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.883">
            <gDNA_intron_boundary i_start="118865" i_stop="118637" i_length="229"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="118636" e_stop="118524" e_length="113"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118523" i_stop="118290" i_length="234"/>
          </intron>
          <exon e_serial="14" e_score="0.983">
            <gDNA_exon_boundary e_start="118289" e_stop="117817" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125435" stop="125363"/>
              <exon start="124487" stop="124368"/>
              <exon start="124247" stop="124113"/>
              <exon start="124032" stop="123971"/>
              <exon start="123623" stop="123548"/>
              <exon start="122656" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124014" stop="123971"/>
              <exon start="123623" stop="123548"/>
              <exon start="122656" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123623" stop="123548"/>
              <exon start="122656" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123618" stop="123548"/>
              <exon start="122656" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120013"/>
              <exon start="119423" stop="119365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122628" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120013"/>
              <exon start="119423" stop="119386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122628" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121252" stop="121216"/>
              <exon start="120187" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119119"/>
              <exon start="118974" stop="118866"/>
              <exon start="118636" stop="118524"/>
              <exon start="118289" stop="118093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120182" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119119"/>
              <exon start="118974" stop="118866"/>
              <exon start="118636" stop="118524"/>
              <exon start="118289" stop="118238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120164" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119119"/>
              <exon start="118974" stop="118866"/>
              <exon start="118636" stop="118524"/>
              <exon start="118289" stop="118235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120138" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119119"/>
              <exon start="118974" stop="118867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118288" stop="117817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118102" stop="117869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118101" stop="117868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118101" stop="117870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATTGCTAATTTTAAATTTACTGAGGATGAGATAGCTTTCATCAGGTCATCGTTGCCATCGTCATGTGAG : GATGGCTTCTTTGAATACCTTCGAAGACTTGACTGTTCAGATATTGAGATATATTCTATTTCTGAAGGATCAGTAGTTTTTCCCAAGGTACCGCTGATGAGGATTGAAGGACCAGTTGCT : GTGGTTCAACTACTGGAAACACCATTTGTAAACCTCATAAATTATGCATCACTAGTTACTACTAATGCTGCAAGACACCGTTTCGTTGCTGGAAGGTCCAAAATATTGCTTGAATTTGGGCTTAGGAGAGCACAG : GGTCCTGATGGTGGTATATCAGCATCCAAGTATTGCTACATGGGTGGATTTGATGCGACAAG : CAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCCGTGGGACACATTCCCATGCCTTTGTTAGCTCATTTCTG : AGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAG : TGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT : GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG : GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA : GGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAG : GTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAG : GTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAG : CTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAG : GTCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAGCACCTGTTGGAGAGTTGCAGTGAACCATGAATGAGAAGTTTGGGAGTCTTCTAGGTTTCTTGTGCATCTTTTTCATCATGTAAACTGAAATTTTACATAAAGTTATTAACCAAAGAGAAGTCCGTTCTTTACTTTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAATTGCTCTGCTAGTTGGTTCTCCTTGCCAACTACACATTTTTCAAACAATTTACACTGG</gDNA_template>
            <first_frame> V  Y  C  *  F  *  I  Y  *  G  *  D  S  F  H  Q  V  I  V  A  I  V  M  *   : G  W  L  L  *  I  P  S  K  T  *  L  F  R  Y  *  D  I  F  Y  F  *  R  I  S  S  F  S  Q  G  T  A  D  E  D  *  R  T  S  C   : C  G  S  T  T  G  N  T  I  C  K  P  H  K  L  C  I  T  S  Y  Y  *  C  C  K  T  P  F  R  C  W  K  V  Q  N  I  A  *  I  W  A  *  E  S  T   : G  S  *  W  W  Y  I  S  I  Q  V  L  L  H  G  W  I  *  C  D  K  :  Q  C  G  S  W  K  A  V  W  N  P  T  P  W  D  T  F  P  C  L  C  *  L  I  S   : E  P  R  *  D  H  R  E  I  T  S  T  S  *  W  F  *  C  L  *  G  F  C  *  S  G  T  D  M  A  *  *  I  K   : V  V  T  L  I  G  W  N  F  Q  R  D  K  S  K  *  V  S  R  F  R  L  V  C  T  C  I  S  W  K  F  F  G  P  C  R  H  L  *   : C  H  E  K  W  S  S  K  F  L  C  S  C  S  C  T  *  *  F  G  :  V  *  S  S  G  H  *  T  R  L  W  *  S  C  L  S  V  M  *  S  *  E  I  L  L  C  Y  *  E  R  I  W  I  A  W  F  C  K  D  E  Y  H  S  *  Q  *  S  *  *  R  N  S  G  C  T  K  *  T   : R  S  R  G  *  C  I  W  Y  W  Y  S  F  S  Y  L  L  C  S  S  C  S  W  C  C  F  Q  V  S  *  N  K  Q  S  A  *  N  Q  T  L  *  R  R  I  K   : G  L  Y  S  M  Q  K  A  V  L  Q  I  V  W  E  G  R  V  P  P  C  R  H  N  D  W  *  K  *  A  T  S  Q   : G  R  *  T  N  F  M  P  P  P  I  *  *  I  *  K  G  I  R  S  A  P  A  C  *  G  T  F  K  V  F  L  A  R  K  V  S :   *  N  K  R  R  P  S  S  S  E  G  D  Q  G  K  M  Y  C  T  T  G  P  N  A  T  R  S  H  E  K  A  E  P  N  T  I  Q   : G  Q  C  E  C  K  V  V  *  F  H  P  F  P  L  A  Q  *  S  T  C  W  R  V  A  V  N  H  E  *  E  V  W  E  S  S  R  F  L  V  H  L  F  H  H  V  N  *  N  F  T  *  S  Y  *  P  K  R  S  P  F  F  T  F  S  P  Q  *  C  S  E  A  I  V  *  A  S  L  E  V  C  K  G  Q  *  K  C  I  C  I  F  L  S  I  E  S  S  E  M  R  G  *  N  W  V  K  P  M  C  T  L  *  L  *  L  M  *  L  S  Q  I  I  V  T  R  K  G  F  S  N  D  Y  G  I  S  F  F  *  N  C  S  A  S  W  F  S  L  P  T  T  H  F  S  N  N  L  H  W </first_frame>
            <second_frame>  F  I  A  N  F  K  F  T  E  D  E  I  A  F  I  R  S  S  L  P  S  S  C  E  :  D  G  F  F  E  Y  L  R  R  L  D  C  S  D  I  E  I  Y  S  I  S  E  G  S  V  V  F  P  K  V  P  L  M  R  I  E  G  P  V  A  :  V  V  Q  L  L  E  T  P  F  V  N  L  I  N  Y  A  S  L  V  T  T  N  A  A  R  H  R  F  V  A  G  R  S  K  I  L  L  E  F  G  L  R  R  A  Q  :  G  P  D  G  G  I  S  A  S  K  Y  C  Y  M  G  G  F  D  A  T  S :   N  V  A  A  G  K  L  F  G  I  P  L  R  G  T  H  S  H  A  F  V  S  S  F  L  :  S  P  D  E  I  I  E  K  S  L  Q  H  H  N  G  S  S  V  C  E  D  F  V  S  L  V  Q  T  W  L  D  K  L  K  :  W  S  H  L  L  G  G  I  F  S  E  T  N  Q  S  E  L  A  A  F  A  S  Y  A  L  A  F  P  G  S  F  L  A  L  V  D  T  Y  D  :  V  M  R  S  G  L  P  N  F  C  A  V  A  L  A  L  N  D  L  G :   Y  K  A  V  G  I  R  L  D  S  G  D  L  A  Y  Q  S  C  E  A  R  K  F  F  C  A  I  E  K  E  F  G  L  P  G  F  A  K  T  S  I  T  A  S  N  D  L  N  E  E  T  L  D  A  L  N  K  Q  :  G  H  E  V  D  A  F  G  I  G  T  H  L  V  T  C  Y  A  Q  A  A  L  G  V  V  F  K  L  V  E  I  N  N  Q  P  R  I  K  L  S  E  D  V  S  K  :  V  S  I  P  C  K  K  R  C  Y  R  L  Y  G  K  E  G  Y  P  L  V  D  I  M  T  G  E  N  E  P  H  P  K  :  V  G  E  R  I  L  C  R  H  P  F  S  E  S  K  R  A  Y  V  V  P  Q  R  V  E  E  L  L  K  C  F  W  P  G  K  S   : A  K  T  R  E  D  L  P  P  L  K  E  I  R  E  R  C  I  A  Q  L  D  Q  M  R  P  D  H  M  R  R  L  N  P  T  P  Y  K  :  V  S  V  S  A  K  L  Y  D  F  I  H  F  L  W  L  N  E  A  P  V  G  E  L  Q  *  T  M  N  E  K  F  G  S  L  L  G  F  L  C  I  F  F  I  M  *  T  E  I  L  H  K  V  I  N  Q  R  E  V  R  S  L  L  F  P  P  S  D  V  P  R  Q  L  Y  K  L  P  W  K  F  V  K  V  N  K  S  A  F  V  F  S  S  Q  L  S  P  Q  K  C  V  D  K  T  G  *  N  P  C  A  P  Y  S  C  D  *  C  N  *  A  K  L  L  *  L  E  K  V  S  V  M  I  M  E  F  H  S  S  E  I  A  L  L  V  G  S  P  C  Q  L  H  I  F  Q  T  I  Y  T   </second_frame>
            <third_frame>   L  L  L  I  L  N  L  L  R  M  R  *  L  S  S  G  H  R  C  H  R  H  V  R :   M  A  S  L  N  T  F  E  D  L  T  V  Q  I  L  R  Y  I  L  F  L  K  D  Q  *  F  F  P  R  Y  R  *  *  G  L  K  D  Q  L  L :   W  F  N  Y  W  K  H  H  L  *  T  S  *  I  M  H  H  *  L  L  L  M  L  Q  D  T  V  S  L  L  E  G  P  K  Y  C  L  N  L  G  L  G  E  H  R :   V  L  M  V  V  Y  Q  H  P  S  I  A  T  W  V  D  L  M  R  Q   : A  M  W  Q  L  E  S  C  L  E  S  H  S  V  G  H  I  P  M  P  L  L  A  H  F  * :   A  Q  M  R  S  *  R  N  H  F  N  I  I  M  V  L  V  F  V  R  I  L  L  V  W  Y  R  H  G  L  I  N  *  S :   G  H  T  Y  W  V  E  F  S  A  R  Q  I  K  V  S  *  P  L  S  P  R  M  H  L  H  F  L  E  V  F  W  P  L  *  T  L  M  M :   S  *  E  V  V  F  Q  I  F  V  Q  L  L  L  H  L  M  I  W   : G  I  K  Q  W  A  L  D  *  T  L  V  I  L  L  I  S  H  V  K  L  G  N  S  F  V  L  L  R  K  N  L  D  C  L  V  L  Q  R  R  V  S  Q  L  A  M  I  L  M  K  K  L  W  M  H  *  I  N  K :   V  T  R  L  M  H  L  V  L  V  L  I  *  L  P  V  M  L  K  L  L  L  V  L  F  S  S  *  L  K  *  T  I  S  L  E  S  N  S  L  K  T  Y  Q  R :   S  L  F  H  A  K  S  G  V  T  D  C  M  G  R  K  G  T  P  L  *  T  *  *  L  V  K  M  S  H  I  P  R :   *  V  N  E  F  Y  A  A  T  H  L  V  N  L  K  G  H  T  *  C  P  S  V  L  R  N  F  *  S  V  F  G  P  E  S  Q  :  L  K  Q  E  K  T  F  L  L  *  R  R  S  G  K  D  V  L  H  N  W  T  K  C  D  Q  I  T  *  E  G  *  T  Q  H  H  T  R :   S  V  *  V  Q  S  C  M  I  S  S  I  S  S  G  S  M  K  H  L  L  E  S  C  S  E  P  *  M  R  S  L  G  V  F  *  V  S  C  A  S  F  S  S  C  K  L  K  F  Y  I  K  L  L  T  K  E  K  S  V  L  Y  F  F  P  P  V  M  F  R  G  N  C  I  S  F  L  G  S  L  *  R  S  I  K  V  H  L  Y  F  P  L  N  *  V  L  R  N  A  W  I  K  L  G  E  T  H  V  H  L  I  V  V  I  N  V  T  E  P  N  Y  C  D  *  K  R  F  Q  *  *  L  W  N  F  I  L  L  K  L  L  C  *  L  V  L  L  A  N  Y  T  F  F  K  Q  F  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125434" stop="125363"/>
                    <exon start="124487" stop="124368"/>
                    <exon start="124247" stop="124113"/>
                    <exon start="124032" stop="123971"/>
                    <exon start="123623" stop="123548"/>
                    <exon start="122656" stop="122555"/>
                    <exon start="121694" stop="121578"/>
                    <exon start="121274" stop="121216"/>
                    <exon start="120187" stop="120013"/>
                    <exon start="119423" stop="119289"/>
                    <exon start="119217" stop="119119"/>
                    <exon start="118974" stop="118866"/>
                    <exon start="118636" stop="118524"/>
                    <exon start="118289" stop="118212"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1449</number_coding_nucleotides>
                  <number_encoded_amino_acids>483</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIANFKFTEDEIAFIRSSLPSSCEDGFFEYLRRLDCSDIEIYSISEGSVVFPKVPLMRIEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGRSKILLEFGLRRAQGPDGGISASKYCYMGGFDATSNVAAGKLFGIPLRGTHSHAFVSSFLSPDEIIEKSLQHHNGSSVCEDFVSLVQTWLDKLKWSHLLGGIFSETNQSELAAFASYALAFPGSFLALVDTYDVMRSGLPNFCAVALALNDLGYKAVGIRLDSGDLAYQSCEARKFFCAIEKEFGLPGFAKTSITASNDLNEETLDALNKQGHEVDAFGIGTHLVTCYAQAALGVVFKLVEINNQPRIKLSEDVSKVSIPCKKRCYRLYGKEGYPLVDIMTGENEPHPKVGERILCRHPFSESKRAYVVPQRVEELLKCFWPGKSAKTREDLPPLKEIRERCIAQLDQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="125435" e_stop="125363"/>
            <exon e_start="124487" e_stop="124368"/>
            <exon e_start="124247" e_stop="124113"/>
            <exon e_start="124032" e_stop="123971"/>
            <exon e_start="123623" e_stop="123548"/>
            <exon e_start="122656" e_stop="122555"/>
            <exon e_start="121694" e_stop="121578"/>
            <exon e_start="121274" e_stop="121216"/>
            <exon e_start="120187" e_stop="120013"/>
            <exon e_start="119423" e_stop="119289"/>
            <exon e_start="119217" e_stop="119119"/>
            <exon e_start="118974" e_stop="118866"/>
            <exon e_start="118636" e_stop="118524"/>
            <exon e_start="118284" e_stop="117868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.774" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.502" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125435" e_stop="125363" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.928">
            <gDNA_intron_boundary i_start="125362" i_stop="124488" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124487" e_stop="124368" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.774" acc_prob="0.879">
            <gDNA_intron_boundary i_start="124367" i_stop="124248" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124247" e_stop="124113" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="124112" i_stop="124033" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124032" e_stop="123971" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.992">
            <gDNA_intron_boundary i_start="123970" i_stop="123624" i_length="347"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123623" e_stop="123548" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.988">
            <gDNA_intron_boundary i_start="123547" i_stop="122657" i_length="891"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="122656" e_stop="122555" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.947" acc_prob="0.985">
            <gDNA_intron_boundary i_start="122554" i_stop="121695" i_length="860"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="121694" e_stop="121578" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121577" i_stop="121275" i_length="303"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="121274" e_stop="121216" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.996">
            <gDNA_intron_boundary i_start="121215" i_stop="120188" i_length="1028"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="120187" e_stop="120013" e_length="175"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.845">
            <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="119423" e_stop="119289" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.893" acc_prob="0.961">
            <gDNA_intron_boundary i_start="119288" i_stop="119218" i_length="71"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="119217" e_stop="119119" e_length="99"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="119118" i_stop="118975" i_length="144"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="118974" e_stop="118866" e_length="109"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.883">
            <gDNA_intron_boundary i_start="118865" i_stop="118637" i_length="229"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="118636" e_stop="118524" e_length="113"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.502">
            <gDNA_intron_boundary i_start="118523" i_stop="118285" i_length="239"/>
          </intron>
          <exon e_serial="14" e_score="0.978">
            <gDNA_exon_boundary e_start="118284" e_stop="117868" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125435" stop="125363"/>
              <exon start="124487" stop="124368"/>
              <exon start="124247" stop="124113"/>
              <exon start="124032" stop="123971"/>
              <exon start="123623" stop="123548"/>
              <exon start="122656" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124014" stop="123971"/>
              <exon start="123623" stop="123548"/>
              <exon start="122656" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123623" stop="123548"/>
              <exon start="122656" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123618" stop="123548"/>
              <exon start="122656" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120013"/>
              <exon start="119423" stop="119365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122628" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120013"/>
              <exon start="119423" stop="119386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122628" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120138" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119119"/>
              <exon start="118974" stop="118867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119315" stop="119289"/>
              <exon start="119217" stop="119119"/>
              <exon start="118974" stop="118866"/>
              <exon start="118636" stop="118524"/>
              <exon start="118284" stop="118084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118102" stop="117869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118101" stop="117868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118101" stop="117870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATTGCTAATTTTAAATTTACTGAGGATGAGATAGCTTTCATCAGGTCATCGTTGCCATCGTCATGTGAG : GATGGCTTCTTTGAATACCTTCGAAGACTTGACTGTTCAGATATTGAGATATATTCTATTTCTGAAGGATCAGTAGTTTTTCCCAAGGTACCGCTGATGAGGATTGAAGGACCAGTTGCT : GTGGTTCAACTACTGGAAACACCATTTGTAAACCTCATAAATTATGCATCACTAGTTACTACTAATGCTGCAAGACACCGTTTCGTTGCTGGAAGGTCCAAAATATTGCTTGAATTTGGGCTTAGGAGAGCACAG : GGTCCTGATGGTGGTATATCAGCATCCAAGTATTGCTACATGGGTGGATTTGATGCGACAAG : CAATGTGGCAGCTGGAAAGCTGTTTGGAATCCCACTCCGTGGGACACATTCCCATGCCTTTGTTAGCTCATTTCTG : AGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAG : TGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT : GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG : GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA : GGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAG : GTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAG : GTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAG : CTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAG : TGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAGCACCTGTTGGAGAGTTGCAGTGAACCATGAATGAGAAGTTTGGGAGTCTTCTAGGTTTCTTGTGCATCTTTTTCATCATGTAAACTGAAATTTTACATAAAGTTATTAACCAAAGAGAAGTCCGTTCTTTACTTTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAATTGCTCT</gDNA_template>
            <first_frame> V  Y  C  *  F  *  I  Y  *  G  *  D  S  F  H  Q  V  I  V  A  I  V  M  *   : G  W  L  L  *  I  P  S  K  T  *  L  F  R  Y  *  D  I  F  Y  F  *  R  I  S  S  F  S  Q  G  T  A  D  E  D  *  R  T  S  C   : C  G  S  T  T  G  N  T  I  C  K  P  H  K  L  C  I  T  S  Y  Y  *  C  C  K  T  P  F  R  C  W  K  V  Q  N  I  A  *  I  W  A  *  E  S  T   : G  S  *  W  W  Y  I  S  I  Q  V  L  L  H  G  W  I  *  C  D  K  :  Q  C  G  S  W  K  A  V  W  N  P  T  P  W  D  T  F  P  C  L  C  *  L  I  S   : E  P  R  *  D  H  R  E  I  T  S  T  S  *  W  F  *  C  L  *  G  F  C  *  S  G  T  D  M  A  *  *  I  K   : V  V  T  L  I  G  W  N  F  Q  R  D  K  S  K  *  V  S  R  F  R  L  V  C  T  C  I  S  W  K  F  F  G  P  C  R  H  L  *   : C  H  E  K  W  S  S  K  F  L  C  S  C  S  C  T  *  *  F  G  :  V  *  S  S  G  H  *  T  R  L  W  *  S  C  L  S  V  M  *  S  *  E  I  L  L  C  Y  *  E  R  I  W  I  A  W  F  C  K  D  E  Y  H  S  *  Q  *  S  *  *  R  N  S  G  C  T  K  *  T   : R  S  R  G  *  C  I  W  Y  W  Y  S  F  S  Y  L  L  C  S  S  C  S  W  C  C  F  Q  V  S  *  N  K  Q  S  A  *  N  Q  T  L  *  R  R  I  K   : G  L  Y  S  M  Q  K  A  V  L  Q  I  V  W  E  G  R  V  P  P  C  R  H  N  D  W  *  K  *  A  T  S  Q   : G  R  *  T  N  F  M  P  P  P  I  *  *  I  *  K  G  I  R  S  A  P  A  C  *  G  T  F  K  V  F  L  A  R  K  V  S :   *  N  K  R  R  P  S  S  S  E  G  D  Q  G  K  M  Y  C  T  T  G  P  N  A  T  R  S  H  E  K  A  E  P  N  T  I  Q   : V  *  V  Q  S  C  M  I  S  S  I  S  S  G  S  M  K  H  L  L  E  S  C  S  E  P  *  M  R  S  L  G  V  F  *  V  S  C  A  S  F  S  S  C  K  L  K  F  Y  I  K  L  L  T  K  E  K  S  V  L  Y  F  F  P  P  V  M  F  R  G  N  C  I  S  F  L  G  S  L  *  R  S  I  K  V  H  L  Y  F  P  L  N  *  V  L  R  N  A  W  I  K  L  G  E  T  H  V  H  L  I  V  V  I  N  V  T  E  P  N  Y  C  D  *  K  R  F  Q  *  *  L  W  N  F  I  L  L  K  L  L  </first_frame>
            <second_frame>  F  I  A  N  F  K  F  T  E  D  E  I  A  F  I  R  S  S  L  P  S  S  C  E  :  D  G  F  F  E  Y  L  R  R  L  D  C  S  D  I  E  I  Y  S  I  S  E  G  S  V  V  F  P  K  V  P  L  M  R  I  E  G  P  V  A  :  V  V  Q  L  L  E  T  P  F  V  N  L  I  N  Y  A  S  L  V  T  T  N  A  A  R  H  R  F  V  A  G  R  S  K  I  L  L  E  F  G  L  R  R  A  Q  :  G  P  D  G  G  I  S  A  S  K  Y  C  Y  M  G  G  F  D  A  T  S :   N  V  A  A  G  K  L  F  G  I  P  L  R  G  T  H  S  H  A  F  V  S  S  F  L  :  S  P  D  E  I  I  E  K  S  L  Q  H  H  N  G  S  S  V  C  E  D  F  V  S  L  V  Q  T  W  L  D  K  L  K  :  W  S  H  L  L  G  G  I  F  S  E  T  N  Q  S  E  L  A  A  F  A  S  Y  A  L  A  F  P  G  S  F  L  A  L  V  D  T  Y  D  :  V  M  R  S  G  L  P  N  F  C  A  V  A  L  A  L  N  D  L  G :   Y  K  A  V  G  I  R  L  D  S  G  D  L  A  Y  Q  S  C  E  A  R  K  F  F  C  A  I  E  K  E  F  G  L  P  G  F  A  K  T  S  I  T  A  S  N  D  L  N  E  E  T  L  D  A  L  N  K  Q  :  G  H  E  V  D  A  F  G  I  G  T  H  L  V  T  C  Y  A  Q  A  A  L  G  V  V  F  K  L  V  E  I  N  N  Q  P  R  I  K  L  S  E  D  V  S  K  :  V  S  I  P  C  K  K  R  C  Y  R  L  Y  G  K  E  G  Y  P  L  V  D  I  M  T  G  E  N  E  P  H  P  K  :  V  G  E  R  I  L  C  R  H  P  F  S  E  S  K  R  A  Y  V  V  P  Q  R  V  E  E  L  L  K  C  F  W  P  G  K  S   : A  K  T  R  E  D  L  P  P  L  K  E  I  R  E  R  C  I  A  Q  L  D  Q  M  R  P  D  H  M  R  R  L  N  P  T  P  Y  K  :  C  E  C  K  V  V  *  F  H  P  F  P  L  A  Q  *  S  T  C  W  R  V  A  V  N  H  E  *  E  V  W  E  S  S  R  F  L  V  H  L  F  H  H  V  N  *  N  F  T  *  S  Y  *  P  K  R  S  P  F  F  T  F  S  P  Q  *  C  S  E  A  I  V  *  A  S  L  E  V  C  K  G  Q  *  K  C  I  C  I  F  L  S  I  E  S  S  E  M  R  G  *  N  W  V  K  P  M  C  T  L  *  L  *  L  M  *  L  S  Q  I  I  V  T  R  K  G  F  S  N  D  Y  G  I  S  F  F  *  N  C  S </second_frame>
            <third_frame>   L  L  L  I  L  N  L  L  R  M  R  *  L  S  S  G  H  R  C  H  R  H  V  R :   M  A  S  L  N  T  F  E  D  L  T  V  Q  I  L  R  Y  I  L  F  L  K  D  Q  *  F  F  P  R  Y  R  *  *  G  L  K  D  Q  L  L :   W  F  N  Y  W  K  H  H  L  *  T  S  *  I  M  H  H  *  L  L  L  M  L  Q  D  T  V  S  L  L  E  G  P  K  Y  C  L  N  L  G  L  G  E  H  R :   V  L  M  V  V  Y  Q  H  P  S  I  A  T  W  V  D  L  M  R  Q   : A  M  W  Q  L  E  S  C  L  E  S  H  S  V  G  H  I  P  M  P  L  L  A  H  F  * :   A  Q  M  R  S  *  R  N  H  F  N  I  I  M  V  L  V  F  V  R  I  L  L  V  W  Y  R  H  G  L  I  N  *  S :   G  H  T  Y  W  V  E  F  S  A  R  Q  I  K  V  S  *  P  L  S  P  R  M  H  L  H  F  L  E  V  F  W  P  L  *  T  L  M  M :   S  *  E  V  V  F  Q  I  F  V  Q  L  L  L  H  L  M  I  W   : G  I  K  Q  W  A  L  D  *  T  L  V  I  L  L  I  S  H  V  K  L  G  N  S  F  V  L  L  R  K  N  L  D  C  L  V  L  Q  R  R  V  S  Q  L  A  M  I  L  M  K  K  L  W  M  H  *  I  N  K :   V  T  R  L  M  H  L  V  L  V  L  I  *  L  P  V  M  L  K  L  L  L  V  L  F  S  S  *  L  K  *  T  I  S  L  E  S  N  S  L  K  T  Y  Q  R :   S  L  F  H  A  K  S  G  V  T  D  C  M  G  R  K  G  T  P  L  *  T  *  *  L  V  K  M  S  H  I  P  R :   *  V  N  E  F  Y  A  A  T  H  L  V  N  L  K  G  H  T  *  C  P  S  V  L  R  N  F  *  S  V  F  G  P  E  S  Q  :  L  K  Q  E  K  T  F  L  L  *  R  R  S  G  K  D  V  L  H  N  W  T  K  C  D  Q  I  T  *  E  G  *  T  Q  H  H  T  S :   V  S  A  K  L  Y  D  F  I  H  F  L  W  L  N  E  A  P  V  G  E  L  Q  *  T  M  N  E  K  F  G  S  L  L  G  F  L  C  I  F  F  I  M  *  T  E  I  L  H  K  V  I  N  Q  R  E  V  R  S  L  L  F  P  P  S  D  V  P  R  Q  L  Y  K  L  P  W  K  F  V  K  V  N  K  S  A  F  V  F  S  S  Q  L  S  P  Q  K  C  V  D  K  T  G  *  N  P  C  A  P  Y  S  C  D  *  C  N  *  A  K  L  L  *  L  E  K  V  S  V  M  I  M  E  F  H  S  S  E  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="25" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125434" stop="125363"/>
                    <exon start="124487" stop="124368"/>
                    <exon start="124247" stop="124113"/>
                    <exon start="124032" stop="123971"/>
                    <exon start="123623" stop="123548"/>
                    <exon start="122656" stop="122555"/>
                    <exon start="121694" stop="121578"/>
                    <exon start="121274" stop="121216"/>
                    <exon start="120187" stop="120013"/>
                    <exon start="119423" stop="119289"/>
                    <exon start="119217" stop="119119"/>
                    <exon start="118974" stop="118866"/>
                    <exon start="118636" stop="118524"/>
                    <exon start="118284" stop="118264"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIANFKFTEDEIAFIRSSLPSSCEDGFFEYLRRLDCSDIEIYSISEGSVVFPKVPLMRIEGPVAVVQLLETPFVNLINYASLVTTNAARHRFVAGRSKILLEFGLRRAQGPDGGISASKYCYMGGFDATSNVAAGKLFGIPLRGTHSHAFVSSFLSPDEIIEKSLQHHNGSSVCEDFVSLVQTWLDKLKWSHLLGGIFSETNQSELAAFASYALAFPGSFLALVDTYDVMRSGLPNFCAVALALNDLGYKAVGIRLDSGDLAYQSCEARKFFCAIEKEFGLPGFAKTSITASNDLNEETLDALNKQGHEVDAFGIGTHLVTCYAQAALGVVFKLVEINNQPRIKLSEDVSKVSIPCKKRCYRLYGKEGYPLVDIMTGENEPHPKVGERILCRHPFSESKRAYVVPQRVEELLKCFWPGKSAKTREDLPPLKEIRERCIAQLDQMRPDHMRRLNPTPYKCECKVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="122660" e_stop="122555"/>
            <exon e_start="121694" e_stop="121578"/>
            <exon e_start="121274" e_stop="121216"/>
            <exon e_start="120187" e_stop="120013"/>
            <exon e_start="119423" e_stop="119289"/>
            <exon e_start="119217" e_stop="119119"/>
            <exon e_start="118974" e_stop="118866"/>
            <exon e_start="118636" e_stop="118524"/>
            <exon e_start="118289" e_stop="117817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.985" e_score="0.953"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="122660" e_stop="122555" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.985">
            <gDNA_intron_boundary i_start="122554" i_stop="121695" i_length="860"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121694" e_stop="121578" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121577" i_stop="121275" i_length="303"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121274" e_stop="121216" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.996">
            <gDNA_intron_boundary i_start="121215" i_stop="120188" i_length="1028"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120187" e_stop="120013" e_length="175"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.845">
            <gDNA_intron_boundary i_start="120012" i_stop="119424" i_length="589"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="119423" e_stop="119289" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.893" acc_prob="0.961">
            <gDNA_intron_boundary i_start="119288" i_stop="119218" i_length="71"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119217" e_stop="119119" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="119118" i_stop="118975" i_length="144"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118974" e_stop="118866" e_length="109"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.883">
            <gDNA_intron_boundary i_start="118865" i_stop="118637" i_length="229"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118636" e_stop="118524" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="118523" i_stop="118290" i_length="234"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="118289" e_stop="117817" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122660" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120013"/>
              <exon start="119423" stop="119348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122628" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120013"/>
              <exon start="119423" stop="119386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122628" stop="122555"/>
              <exon start="121694" stop="121578"/>
              <exon start="121274" stop="121216"/>
              <exon start="120187" stop="120024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121252" stop="121216"/>
              <exon start="120187" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119119"/>
              <exon start="118974" stop="118866"/>
              <exon start="118636" stop="118524"/>
              <exon start="118289" stop="118093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120182" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119119"/>
              <exon start="118974" stop="118866"/>
              <exon start="118636" stop="118524"/>
              <exon start="118289" stop="118238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120164" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119119"/>
              <exon start="118974" stop="118866"/>
              <exon start="118636" stop="118524"/>
              <exon start="118289" stop="118235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120138" stop="120013"/>
              <exon start="119423" stop="119289"/>
              <exon start="119217" stop="119119"/>
              <exon start="118974" stop="118867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118288" stop="117817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118102" stop="117869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118101" stop="117868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118101" stop="117870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAGCCCAGATGAGATCATAGAGAAATCACTTCAACATCATAATGGTTCTAGTGTTTGTGAGGATTTTGTTAGTCTGGTACAGACATGGCTTGATAAATTAAAG : TGGTCACACTTATTGGGTGGAATTTTCAGCGAGACAAATCAAAGTGAGTTAGCCGCTTTCGCCTCGTATGCACTTGCATTTCCTGGAAGTTTTTTGGCCCTTGTAGACACTTATGAT : GTCATGAGAAGTGGTCTTCCAAATTTTTGTGCAGTTGCTCTTGCACTTAATGATTTGGG : GTATAAAGCAGTGGGCATTAGACTAGACTCTGGTGATCTTGCTTATCAGTCATGTGAAGCTAGGAAATTCTTTTGTGCTATTGAGAAAGAATTTGGATTGCCTGGTTTTGCAAAGACGAGTATCACAGCTAGCAATGATCTTAATGAAGAAACTCTGGATGCACTAAATAAACAA : GGTCACGAGGTTGATGCATTTGGTATTGGTACTCATTTAGTTACCTGTTATGCTCAAGCTGCTCTTGGTGTTGTTTTCAAGTTAGTTGAAATAAACAATCAGCCTAGAATCAAACTCTCTGAAGACGTATCAAAG : GTCTCTATTCCATGCAAAAAGCGGTGTTACAGATTGTATGGGAAGGAAGGGTACCCCCTTGTAGACATAATGACTGGTGAAAATGAGCCACATCCCAAG : GTAGGTGAACGAATTTTATGCCGCCACCCATTTAGTGAATCTAAAAGGGCATACGTAGTGCCCCAGCGTGTTGAGGAACTTTTAAAGTGTTTTTGGCCCGGAAAGTCAG : CTAAAACAAGAGAAGACCTTCCTCCTCTGAAGGAGATCAGGGAAAGATGTATTGCACAACTGGACCAAATGCGACCAGATCACATGAGAAGGCTGAACCCAACACCATACAAG : GTCAGTGTGAGTGCAAAGTTGTATGATTTCATCCATTTCCTCTGGCTCAATGAAGCACCTGTTGGAGAGTTGCAGTGAACCATGAATGAGAAGTTTGGGAGTCTTCTAGGTTTCTTGTGCATCTTTTTCATCATGTAAACTGAAATTTTACATAAAGTTATTAACCAAAGAGAAGTCCGTTCTTTACTTTTTCCCCCCAGTGATGTTCCGAGGCAATTGTATAAGCTTCCTTGGAAGTTTGTAAAGGTCAATAAAAGTGCATTTGTATTTTCCTCTCAATTGAGTCCTCAGAAATGCGTGGATAAAACTGGGTGAAACCCATGTGCACCTTATAGTTGTGATTAATGTAACTGAGCCAAATTATTGTGACTAGAAAAGGTTTCAGTAATGATTATGGAATTTCATTCTTCTGAAATTGCTCTGCTAGTTGGTTCTCCTTGCCAACTACACATTTTTCAAACAATTTACACTGG</gDNA_template>
            <first_frame> A  E  P  R  *  D  H  R  E  I  T  S  T  S  *  W  F  *  C  L  *  G  F  C  *  S  G  T  D  M  A  *  *  I  K   : V  V  T  L  I  G  W  N  F  Q  R  D  K  S  K  *  V  S  R  F  R  L  V  C  T  C  I  S  W  K  F  F  G  P  C  R  H  L  *   : C  H  E  K  W  S  S  K  F  L  C  S  C  S  C  T  *  *  F  G  :  V  *  S  S  G  H  *  T  R  L  W  *  S  C  L  S  V  M  *  S  *  E  I  L  L  C  Y  *  E  R  I  W  I  A  W  F  C  K  D  E  Y  H  S  *  Q  *  S  *  *  R  N  S  G  C  T  K  *  T   : R  S  R  G  *  C  I  W  Y  W  Y  S  F  S  Y  L  L  C  S  S  C  S  W  C  C  F  Q  V  S  *  N  K  Q  S  A  *  N  Q  T  L  *  R  R  I  K   : G  L  Y  S  M  Q  K  A  V  L  Q  I  V  W  E  G  R  V  P  P  C  R  H  N  D  W  *  K  *  A  T  S  Q   : G  R  *  T  N  F  M  P  P  P  I  *  *  I  *  K  G  I  R  S  A  P  A  C  *  G  T  F  K  V  F  L  A  R  K  V  S :   *  N  K  R  R  P  S  S  S  E  G  D  Q  G  K  M  Y  C  T  T  G  P  N  A  T  R  S  H  E  K  A  E  P  N  T  I  Q   : G  Q  C  E  C  K  V  V  *  F  H  P  F  P  L  A  Q  *  S  T  C  W  R  V  A  V  N  H  E  *  E  V  W  E  S  S  R  F  L  V  H  L  F  H  H  V  N  *  N  F  T  *  S  Y  *  P  K  R  S  P  F  F  T  F  S  P  Q  *  C  S  E  A  I  V  *  A  S  L  E  V  C  K  G  Q  *  K  C  I  C  I  F  L  S  I  E  S  S  E  M  R  G  *  N  W  V  K  P  M  C  T  L  *  L  *  L  M  *  L  S  Q  I  I  V  T  R  K  G  F  S  N  D  Y  G  I  S  F  F  *  N  C  S  A  S  W  F  S  L  P  T  T  H  F  S  N  N  L  H  W </first_frame>
            <second_frame>  Q  S  P  D  E  I  I  E  K  S  L  Q  H  H  N  G  S  S  V  C  E  D  F  V  S  L  V  Q  T  W  L  D  K  L  K  :  W  S  H  L  L  G  G  I  F  S  E  T  N  Q  S  E  L  A  A  F  A  S  Y  A  L  A  F  P  G  S  F  L  A  L  V  D  T  Y  D  :  V  M  R  S  G  L  P  N  F  C  A  V  A  L  A  L  N  D  L  G :   Y  K  A  V  G  I  R  L  D  S  G  D  L  A  Y  Q  S  C  E  A  R  K  F  F  C  A  I  E  K  E  F  G  L  P  G  F  A  K  T  S  I  T  A  S  N  D  L  N  E  E  T  L  D  A  L  N  K  Q  :  G  H  E  V  D  A  F  G  I  G  T  H  L  V  T  C  Y  A  Q  A  A  L  G  V  V  F  K  L  V  E  I  N  N  Q  P  R  I  K  L  S  E  D  V  S  K  :  V  S  I  P  C  K  K  R  C  Y  R  L  Y  G  K  E  G  Y  P  L  V  D  I  M  T  G  E  N  E  P  H  P  K  :  V  G  E  R  I  L  C  R  H  P  F  S  E  S  K  R  A  Y  V  V  P  Q  R  V  E  E  L  L  K  C  F  W  P  G  K  S   : A  K  T  R  E  D  L  P  P  L  K  E  I  R  E  R  C  I  A  Q  L  D  Q  M  R  P  D  H  M  R  R  L  N  P  T  P  Y  K  :  V  S  V  S  A  K  L  Y  D  F  I  H  F  L  W  L  N  E  A  P  V  G  E  L  Q  *  T  M  N  E  K  F  G  S  L  L  G  F  L  C  I  F  F  I  M  *  T  E  I  L  H  K  V  I  N  Q  R  E  V  R  S  L  L  F  P  P  S  D  V  P  R  Q  L  Y  K  L  P  W  K  F  V  K  V  N  K  S  A  F  V  F  S  S  Q  L  S  P  Q  K  C  V  D  K  T  G  *  N  P  C  A  P  Y  S  C  D  *  C  N  *  A  K  L  L  *  L  E  K  V  S  V  M  I  M  E  F  H  S  S  E  I  A  L  L  V  G  S  P  C  Q  L  H  I  F  Q  T  I  Y  T   </second_frame>
            <third_frame>   R  A  Q  M  R  S  *  R  N  H  F  N  I  I  M  V  L  V  F  V  R  I  L  L  V  W  Y  R  H  G  L  I  N  *  S :   G  H  T  Y  W  V  E  F  S  A  R  Q  I  K  V  S  *  P  L  S  P  R  M  H  L  H  F  L  E  V  F  W  P  L  *  T  L  M  M :   S  *  E  V  V  F  Q  I  F  V  Q  L  L  L  H  L  M  I  W   : G  I  K  Q  W  A  L  D  *  T  L  V  I  L  L  I  S  H  V  K  L  G  N  S  F  V  L  L  R  K  N  L  D  C  L  V  L  Q  R  R  V  S  Q  L  A  M  I  L  M  K  K  L  W  M  H  *  I  N  K :   V  T  R  L  M  H  L  V  L  V  L  I  *  L  P  V  M  L  K  L  L  L  V  L  F  S  S  *  L  K  *  T  I  S  L  E  S  N  S  L  K  T  Y  Q  R :   S  L  F  H  A  K  S  G  V  T  D  C  M  G  R  K  G  T  P  L  *  T  *  *  L  V  K  M  S  H  I  P  R :   *  V  N  E  F  Y  A  A  T  H  L  V  N  L  K  G  H  T  *  C  P  S  V  L  R  N  F  *  S  V  F  G  P  E  S  Q  :  L  K  Q  E  K  T  F  L  L  *  R  R  S  G  K  D  V  L  H  N  W  T  K  C  D  Q  I  T  *  E  G  *  T  Q  H  H  T  R :   S  V  *  V  Q  S  C  M  I  S  S  I  S  S  G  S  M  K  H  L  L  E  S  C  S  E  P  *  M  R  S  L  G  V  F  *  V  S  C  A  S  F  S  S  C  K  L  K  F  Y  I  K  L  L  T  K  E  K  S  V  L  Y  F  F  P  P  V  M  F  R  G  N  C  I  S  F  L  G  S  L  *  R  S  I  K  V  H  L  Y  F  P  L  N  *  V  L  R  N  A  W  I  K  L  G  E  T  H  V  H  L  I  V  V  I  N  V  T  E  P  N  Y  C  D  *  K  R  F  Q  *  *  L  W  N  F  I  L  L  K  L  L  C  *  L  V  L  L  A  N  Y  T  F  F  K  Q  F  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="25" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122659" stop="122555"/>
                    <exon start="121694" stop="121578"/>
                    <exon start="121274" stop="121216"/>
                    <exon start="120187" stop="120013"/>
                    <exon start="119423" stop="119289"/>
                    <exon start="119217" stop="119119"/>
                    <exon start="118974" stop="118866"/>
                    <exon start="118636" stop="118524"/>
                    <exon start="118289" stop="118212"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSPDEIIEKSLQHHNGSSVCEDFVSLVQTWLDKLKWSHLLGGIFSETNQSELAAFASYALAFPGSFLALVDTYDVMRSGLPNFCAVALALNDLGYKAVGIRLDSGDLAYQSCEARKFFCAIEKEFGLPGFAKTSITASNDLNEETLDALNKQGHEVDAFGIGTHLVTCYAQAALGVVFKLVEINNQPRIKLSEDVSKVSIPCKKRCYRLYGKEGYPLVDIMTGENEPHPKVGERILCRHPFSESKRAYVVPQRVEELLKCFWPGKSAKTREDLPPLKEIRERCIAQLDQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="128399" PGL_stop="127418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128399" e_stop="128157"/>
            <exon e_start="128045" e_stop="127976"/>
            <exon e_start="127885" e_stop="127735"/>
            <exon e_start="127617" e_stop="127418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.534" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128399" e_stop="128157" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.900">
            <gDNA_intron_boundary i_start="128156" i_stop="128046" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128045" e_stop="127976" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.837" acc_prob="0.997">
            <gDNA_intron_boundary i_start="127975" i_stop="127886" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127885" e_stop="127735" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.534">
            <gDNA_intron_boundary i_start="127734" i_stop="127618" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="127617" e_stop="127418" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128399" stop="128157"/>
              <exon start="128045" stop="127976"/>
              <exon start="127885" stop="127735"/>
              <exon start="127617" stop="127418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390441" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCAAAAAGTAGGTTTGTGCGAGGGGAATGCATTCACAAATGCCAAAGTGGCTGGGAATCTACAAGTTAACCAAGACGCCTCGTTAAATGCTATTTTCAACCCAACTGAAAATTGTACAGAAACTAAGGTAACACCACCGATAACTATGTCAAATATAAACCGGTCAGACAGTGCGTTTGAGCTTGAGTCATCGATGAATATTCACCTTGATCCCTTTCAGCTCTCAAGATCTACCAGCAAG : GAAATTTGGAGGGAGGATGACTTACCTTTATATGGTATGAATGAGCTAACGACCAAAACTGCATCAACTG : GATCAAATCTGGCATTCTCAGTTCCCCTAGATACGGATGCATCTAACCTGAAGAGAAGCACTCGGGAGGCCTGCTTGCTTCGATATCAGTTTGGTGCTGTGAATGAAACCAATCTGGATTGTGACCAACTTCTTTCCCAACAACTGTATAG : CAACTTCTGAATTTTGGCCTGCATCGCCTTGCTGGATTTTGTTGAAGTAATGAGACATGCATTTTGCTGCTTAGGACGTTTAATGTTGTTAACTTTTGGGCTCACTAGCCACTGTAATGAATGAATGGAATATAAATGAAAAGATTGGACTAGTTTCTATCTTGTTATGAAATACGAAAATTACTACTAGGCATAGGATA</gDNA_template>
            <first_frame> H  Q  K  V  G  L  C  E  G  N  A  F  T  N  A  K  V  A  G  N  L  Q  V  N  Q  D  A  S  L  N  A  I  F  N  P  T  E  N  C  T  E  T  K  V  T  P  P  I  T  M  S  N  I  N  R  S  D  S  A  F  E  L  E  S  S  M  N  I  H  L  D  P  F  Q  L  S  R  S  T  S  K  :  E  I  W  R  E  D  D  L  P  L  Y  G  M  N  E  L  T  T  K  T  A  S  T   : G  S  N  L  A  F  S  V  P  L  D  T  D  A  S  N  L  K  R  S  T  R  E  A  C  L  L  R  Y  Q  F  G  A  V  N  E  T  N  L  D  C  D  Q  L  L  S  Q  Q  L  Y  S :   N  F  *  I  L  A  C  I  A  L  L  D  F  V  E  V  M  R  H  A  F  C  C  L  G  R  L  M  L  L  T  F  G  L  T  S  H  C  N  E  *  M  E  Y  K  *  K  D  W  T  S  F  Y  L  V  M  K  Y  E  N  Y  Y  *  A  *  D  </first_frame>
            <second_frame>  I  K  K  *  V  C  A  R  G  M  H  S  Q  M  P  K  W  L  G  I  Y  K  L  T  K  T  P  R  *  M  L  F  S  T  Q  L  K  I  V  Q  K  L  R  *  H  H  R  *  L  C  Q  I  *  T  G  Q  T  V  R  L  S  L  S  H  R  *  I  F  T  L  I  P  F  S  S  Q  D  L  P  A  R :   K  F  G  G  R  M  T  Y  L  Y  M  V  *  M  S  *  R  P  K  L  H  Q  L  :  D  Q  I  W  H  S  Q  F  P  *  I  R  M  H  L  T  *  R  E  A  L  G  R  P  A  C  F  D  I  S  L  V  L  *  M  K  P  I  W  I  V  T  N  F  F  P  N  N  C  I   : A  T  S  E  F  W  P  A  S  P  C  W  I  L  L  K  *  *  D  M  H  F  A  A  *  D  V  *  C  C  *  L  L  G  S  L  A  T  V  M  N  E  W  N  I  N  E  K  I  G  L  V  S  I  L  L  *  N  T  K  I  T  T  R  H  R  I </second_frame>
            <third_frame>   S  K  S  R  F  V  R  G  E  C  I  H  K  C  Q  S  G  W  E  S  T  S  *  P  R  R  L  V  K  C  Y  F  Q  P  N  *  K  L  Y  R  N  *  G  N  T  T  D  N  Y  V  K  Y  K  P  V  R  Q  C  V  *  A  *  V  I  D  E  Y  S  P  *  S  L  S  A  L  K  I  Y  Q  Q   : G  N  L  E  G  G  *  L  T  F  I  W  Y  E  *  A  N  D  Q  N  C  I  N  W :   I  K  S  G  I  L  S  S  P  R  Y  G  C  I  *  P  E  E  K  H  S  G  G  L  L  A  S  I  S  V  W  C  C  E  *  N  Q  S  G  L  *  P  T  S  F  P  T  T  V  *  :  Q  L  L  N  F  G  L  H  R  L  A  G  F  C  *  S  N  E  T  C  I  L  L  L  R  T  F  N  V  V  N  F  W  A  H  *  P  L  *  *  M  N  G  I  *  M  K  R  L  D  *  F  L  S  C  Y  E  I  R  K  L  L  L  G  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128399" stop="128157"/>
                    <exon start="128045" stop="127976"/>
                    <exon start="127885" stop="127735"/>
                    <exon start="127617" stop="127608"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQKVGLCEGNAFTNAKVAGNLQVNQDASLNAIFNPTENCTETKVTPPITMSNINRSDSAFELESSMNIHLDPFQLSRSTSKEIWREDDLPLYGMNELTTKTASTGSNLAFSVPLDTDASNLKRSTREACLLRYQFGAVNETNLDCDQLLSQQLYSNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="-" PGL_start="129730" PGL_stop="128429"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129730" e_stop="129327"/>
            <exon e_start="129192" e_stop="129091"/>
            <exon e_start="129007" e_stop="128942"/>
            <exon e_start="128817" e_stop="128752"/>
            <exon e_start="128474" e_stop="128429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="129730" e_stop="129327" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="129326" i_stop="129193" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="129192" e_stop="129091" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.929">
            <gDNA_intron_boundary i_start="129090" i_stop="129008" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="129007" e_stop="128942" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.802" acc_prob="0.991">
            <gDNA_intron_boundary i_start="128941" i_stop="128818" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="128817" e_stop="128752" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.963">
            <gDNA_intron_boundary i_start="128751" i_stop="128475" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="128474" e_stop="128429" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129730" stop="129327"/>
              <exon start="129192" stop="129091"/>
              <exon start="129007" stop="128942"/>
              <exon start="128817" stop="128795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129729" stop="129327"/>
              <exon start="129192" stop="129091"/>
              <exon start="129007" stop="128942"/>
              <exon start="128817" stop="128752"/>
              <exon start="128474" stop="128461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129690" stop="129327"/>
              <exon start="129192" stop="129091"/>
              <exon start="129007" stop="128942"/>
              <exon start="128817" stop="128752"/>
              <exon start="128474" stop="128429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129689" stop="129327"/>
              <exon start="129192" stop="129091"/>
              <exon start="129007" stop="128942"/>
              <exon start="128817" stop="128754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129689" stop="129327"/>
              <exon start="129192" stop="129091"/>
              <exon start="129007" stop="128942"/>
              <exon start="128817" stop="128777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129689" stop="129327"/>
              <exon start="129192" stop="129091"/>
              <exon start="129007" stop="128942"/>
              <exon start="128817" stop="128807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129689" stop="129327"/>
              <exon start="129192" stop="129091"/>
              <exon start="129007" stop="128999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129689" stop="129327"/>
              <exon start="129192" stop="129159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129689" stop="129327"/>
              <exon start="129192" stop="129171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129689" stop="129327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129689" stop="129387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATTAACTTGATCTGCTCAACACTGAACTTGATTTTGCTGGACTATAATGGCCAACAACAATGTTTATTATCACAATGCTAATTTTTCTTTGACTGATCCTGATCCTGAACCAGATGATATTTCTGTGTTTCTTCGTCATATTCTACTTCCTTCTTCGTCTTCGTCTTCATCTTCATCTAATTTTATGGCCCTGAAGAGTAATGAAATGCAATATTCCTCATCATTACCTCATCTTATGCCTAATAATAATCAACAGGGTAATTTGTCATCCATGATGAATTCATCAGCTTGCGGCATTTTCTCGTCTTCCTATGGGGTTTGTAATGGTGCAACTACTGTTTCTTCCTCATCTGTTGGGACCATAGATTACGATCCGGATGAGTATGAATGTGAAAGTGAG : GATGGTACAGAGGATTTGGGGGCGGAAGCTTCAGTTCAACCGCCATCTCGTAACACTTCCAAGAGAAGCAGAGCAGCTGAAGTGCACAATTTGTCTGAAAAG : AGGAGAAGAAGCAGGATTAATGAGAAGATGAAAGCATTGCAAAAACTTATTCCAAATTCAAATAAG : ACTGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAGCAGCTTCAGCTCCAAGTACAG : ATGTTGACAATGAGAAACGGGTTAAACATGTATCCTCTTGGCCTGC</gDNA_template>
            <first_frame> Q  N  *  L  D  L  L  N  T  E  L  D  F  A  G  L  *  W  P  T  T  M  F  I  I  T  M  L  I  F  L  *  L  I  L  I  L  N  Q  M  I  F  L  C  F  F  V  I  F  Y  F  L  L  R  L  R  L  H  L  H  L  I  L  W  P  *  R  V  M  K  C  N  I  P  H  H  Y  L  I  L  C  L  I  I  I  N  R  V  I  C  H  P  *  *  I  H  Q  L  A  A  F  S  R  L  P  M  G  F  V  M  V  Q  L  L  F  L  P  H  L  L  G  P  *  I  T  I  R  M  S  M  N  V  K  V  R :   M  V  Q  R  I  W  G  R  K  L  Q  F  N  R  H  L  V  T  L  P  R  E  A  E  Q  L  K  C  T  I  C  L  K  R :   G  E  E  A  G  L  M  R  R  *  K  H  C  K  N  L  F  Q  I  Q  I  R :   L  T  R  L  Q  C  L  M  K  P  L  S  I  L  S  S  F  S  S  K  Y  R :   C  *  Q  *  E  T  G  *  T  C  I  L  L  A  C </first_frame>
            <second_frame>  K  I  N  L  I  C  S  T  L  N  L  I  L  L  D  Y  N  G  Q  Q  Q  C  L  L  S  Q  C  *  F  F  F  D  *  S  *  S  *  T  R  *  Y  F  C  V  S  S  S  Y  S  T  S  F  F  V  F  V  F  I  F  I  *  F  Y  G  P  E  E  *  *  N  A  I  F  L  I  I  T  S  S  Y  A  *  *  *  S  T  G  *  F  V  I  H  D  E  F  I  S  L  R  H  F  L  V  F  L  W  G  L  *  W  C  N  Y  C  F  F  L  I  C  W  D  H  R  L  R  S  G  *  V  *  M  *  K  *   : G  W  Y  R  G  F  G  G  G  S  F  S  S  T  A  I  S  *  H  F  Q  E  K  Q  S  S  *  S  A  Q  F  V  *  K   : E  E  K  K  Q  D  *  *  E  D  E  S  I  A  K  T  Y  S  K  F  K  *   : D  *  Q  G  F  N  A  *  *  S  H  *  V  S  *  A  A  S  A  P  S  T   : D  V  D  N  E  K  R  V  K  H  V  S  S  W  P   </second_frame>
            <third_frame>   K  L  T  *  S  A  Q  H  *  T  *  F  C  W  T  I  M  A  N  N  N  V  Y  Y  H  N  A  N  F  S  L  T  D  P  D  P  E  P  D  D  I  S  V  F  L  R  H  I  L  L  P  S  S  S  S  S  S  S  S  S  N  F  M  A  L  K  S  N  E  M  Q  Y  S  S  S  L  P  H  L  M  P  N  N  N  Q  Q  G  N  L  S  S  M  M  N  S  S  A  C  G  I  F  S  S  S  Y  G  V  C  N  G  A  T  T  V  S  S  S  S  V  G  T  I  D  Y  D  P  D  E  Y  E  C  E  S  E  :  D  G  T  E  D  L  G  A  E  A  S  V  Q  P  P  S  R  N  T  S  K  R  S  R  A  A  E  V  H  N  L  S  E  K  :  R  R  R  S  R  I  N  E  K  M  K  A  L  Q  K  L  I  P  N  S  N  K  :  T  D  K  A  S  M  L  D  E  A  I  E  Y  L  K  Q  L  Q  L  Q  V  Q  :  M  L  T  M  R  N  G  L  N  M  Y  P  L  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0064B17.3" strand="-"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129695" stop="129327"/>
                    <exon start="129192" stop="129091"/>
                    <exon start="129007" stop="128942"/>
                    <exon start="128817" stop="128752"/>
                    <exon start="128474" stop="128430"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCWTIMANNNVYYHNANFSLTDPDPEPDDISVFLRHILLPSSSSSSSSSNFMALKSNEMQYSSSLPHLMPNNNQQGNLSSMMNSSACGIFSSSYGVCNGATTVSSSSVGTIDYDPDEYECESEDGTEDLGAEASVQPPSRNTSKRSRAAEVHNLSEKRRRSRINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGLNMYPLGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 257 chains have been computed
$ 
$ memory statistics:
$ 737904 bytes spliced alignments in total
$ 162 spliced alignments have been stored
$ 4554 bytes was the average size of a spliced alignment
$ 42840 bytes predicted gene locations in total
$ 27 predicted gene locations have been stored
$ 1586 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 300 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:44:08
-->
