<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:49:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1857" ref_strand="+" ref_description="T1857">
      <seq>ttcttgcaaataaaaaaatggtgaacttggttgaagcacaaaaaccattgttacatggcctaatgaaattagctggaatcagacctcatagtatagagatagaaccaggcacaattatgaatttttgggttccttctgaaaccataattcaaaaaacgaagaaaaacaaaaaaatcacaaccactactcctctctccaacaaccaatatgctatttcccctgattccaccaccgaacccgacccgaacaaacccgtggtcgtactaatccacggctttgccggcgaaggaatagtgacgtggcaatttcaaatcggtgcattaactaaaaaatactctgtttatgtaccggacctacttttcttcggcggatcagttacggatagctccgatagatcgccgggttttcaagcagagtgtttgggtaaagggctgaggaaattaggcgtggaaaaatgcgtagtggttggatttagttatggaggaatggtggcgtttaagatggcggaaatgtttccagatttagttgaggcgttggtggtgtctggatcgatattagcgatgactgattccattagcactaccacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="30491" stop="29303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30191" g_stop="29603" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="T1857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="T1857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30191" e_stop="29603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCT</genome_strand>
        <mrna_strand>TTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g63810" ref_strand="+" ref_description="C2_At1g63810">
      <seq>aaaaactgcatttcttcttagaattgctgagagtctgcagaacaattgggggatgatgtttacagctacagaagatgatgtagatgttctaatgtctggctatgcattccgccttaaaatttctcatgaaagggctcttggtctggtgactgggcaaagtaataacagtcgacatcaatggagcctctctgctgacagaaaacttcttctgcaacaccaacatgcgagcaagatcaatgctttaaggggtcgttatcctatatatggaccaatagttcggctagctaaaagatgggtctctgcacatctattatccacggtgctgacagaggaggcagttgaactattggtttcaaatcttttcttgagacctttgccatttgaacctcctttctcccgaataacaggatttttgaggttcttacgattattatcggaatatgattgggccttttctcccttaatcgttgattttgatggtgacttttcaactgaggagaaaaataaaattaatgagaatttcatgagaagtagagaagagcatgaaaaggacacacagaaatcaagtcctgcaatgtttttagctactaaatatgacgttgcatctgaagcttggacaagatcctcaccaactacagcagagctaagacgactggtggctttttcaactagcagtgcgaatttgttgaccaaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="68928" stop="63985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68628" g_stop="68596" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68595" i_stop="68512" i_length="84">
            <donor d_prob="0.820" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68511" g_stop="68387" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="158" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68386" i_stop="68250" i_length="137">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68249" g_stop="68129" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="279" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68128" i_stop="68057" i_length="72">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68056" g_stop="67919" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="417" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67918" i_stop="66196" i_length="1723">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66195" g_stop="66099" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="514" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66098" i_stop="65986" i_length="113">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65985" g_stop="65860" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="640" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65859" i_stop="64344" i_length="1516">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64343" g_stop="64285" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="699" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="C2_At1g63810" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At1g63810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68628" e_stop="68596"/>
          <exon e_start="68511" e_stop="68387"/>
          <exon e_start="68249" e_stop="68129"/>
          <exon e_start="68056" e_stop="67919"/>
          <exon e_start="66195" e_stop="66099"/>
          <exon e_start="65985" e_stop="65860"/>
          <exon e_start="64343" e_stop="64285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTGCATTTCTTCTTAGAATTGCTGAGAGGTGGTCTTTCTTGAGTTTATTTTTTATGGAACAATACTTTGTGTAAGCCAACATTTAACTCATTTGAGTGCACCATTCTGGCAGTCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAAGTAAGACAGTTTGTGCCTGTATTCTTTACTCAAATAGAAAATTTCCCTATTGTTATGGAACTTTTTATCTAATATGTAAAAGACAGCCTGTAGTGACCTACTTCTGTGTATTGATTATGGATGATTTTTTTCCACAGGTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCAAGATCAATGCTTTAAGGGGTCGTTATCCTATATATGGACCAATAGTTCGGTAAGGACATGAGTTCATACTCCATGCCCGTTTTCATCCTCCTTATAGCTCATTTACGTCTTTGCTTTGCAGGCTAGCTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTCAAATCTTTTCTTGAGACCTTTGCCATTTGAACCTCCTTTCTCCCGAATAACAGGATTTTTGAGGTTTAATATCTGTCACTCAGCATTCAATTTTACTCAATTATATTACCGGTTACTTTCTCTTCCCCACTTCTTCACACTCAAATACTATTTGGTTAAAAGTTAACTATCAAGAACAAAAGAATTACAATTTGGTTGCTTGGAACACACATGTGCTCTTCCGAAAACCTAATAAGTTCCTGCAAAATTGTGGGCGACTGTCATGCGTGCATCAAATAGTGTTCACTTTCTGTTGTTGTTTCAAAATTATCTTTGCTCTTTCACATTTATGATGGACCTCTTTTTTATTTTCCCTTGTGTATGTTTGTATGTGTCACTTGCAACTTATACTTCTTTCACAACACAGTAGAATGTTGTGACCTTGAATGGAACAGCTAACTTTTTGTGCATTTGATGCTATCTGTTTGAGGGTAAGAATGTGGTGGGTCTTCAGGTAATGTAATTATGTGCATGATTTATAGGGAAGGAGGTGGAGGGCTAAAAAATGTGCATATGTGTAGAGCCATGGTTGGCTGTGGTGCTGATTGTTAGCAGATTTTCTTTTATGAAATAGGCAATGGCTCTTGGCAGTTAAATAGTAGTAGGCTCTAATTGCCACTAATATAGTAACTTCAATTGATCTTTAATTATGATTTTACATGGTCTTAGCATTAATATGTCCTAATCATATGATCAGTTGATGTATTTGGTCAAATTCCTGGTGTCATTGCAAGTTGTTTGAGCCCCATGGCATATTCGGTCGGCCAGCCGTGGCACTTATCTGGCTTATTATTGATGATTGTACTGTTTTGATCCCCATAATCATGGCCAATTGCTATTCATTTCTGTTTTATGTTGCCTATTGCCTCCTGTTCTTCACTATTACTTCTTTTATTACCAAGGTCACTTTCAAAGCTTCAAATATAACAGCTATGCCAATTCAAGTTTTACAGTAATGGTAGGAATACTATGAACCACTAACCCCCGAATTTTTTTCATTCCTAAAACTTCACTTCTTGCGATCTTTTTCATTTACAATCCCAAGTTTGATTGAAGAACACTGTGAGAGAATATTTATCATATTATTTATTGGGGTTGAGTGTGGTGCAAAAGCTACTTCTAAGTTCTAATTGCTTATGAATATATGACTCTACAATATGAGAAGCTTCAAGCCACTTCCGCTGTCCGTGAAACTTTAACTTGATGCAGACTGAGAAAGAATTGTTGAAGGTGCAGATCAGTTTTGTATTTAAAAGTTCCAATATGATATTGGGGCTTGAAGCTAATTATAAAAAGTAAAGGACTCAACTTAAATAAGAAGTTTGCTTGTACCTTTATAAATTTATCAGTTCTACATGACAGCTTGTGCATCTATATCAAAGAGCAGCAGATTCCTCAAAAGAACAGAAAATCTAGGGTGGAAGTGCAGTACTTCTCCCTGGTAGTTATACCCGTGTAGGCTAGAAGATCTACATAAGACAAAAGTTACTGACGTCTGTAATCACGTCAAAACATACTCGTGAGCAGTCAATTGATATAGTGTCCTGCAAACCAACGTTTGAGCTCTAATAGCTGTGTTCTTTTTTCATGCTTGTTTTTTCCCCTTTTAAATTCCCCCGTCCTTTTATGTTCTTTGTTGTTTTTGAGGTAAGAAATGGATGAAATCTGAAATGGTGCTTTCGGTTTCAAATTTAGTTATAAACTCTGTTAGTTGGTCACTTTTTCTTATATTCTGTATCTTAAACAGGTTCTTACGATTATTATCGGAATATGATTGGGCCTTTTCTCCCTTAATCGTTGATTTTGATGGTGACTTTTCAACTGAGGAGAAAAATAAAATTAATGTAAGTACCAAGCCAAATGATCCATCTTTGGAGGGTGTTCCATGCTCTTATCTTGTTTTTCCATGTATATTTTTTTATAATTCAGAATACTATTTGCATATGAAATTTGACAGGAGAATTTCATGAGAAGTAGAGAAGAGCATGAAAAGGACACACAGAAATCAAGTCCTGCAATGTTTTTAGCTACTAAATATGACGTTGCATCTGAAGCTTGGACAAGATCCTCACCAACTACAGCAGTAAGTGTTCCTCAATGATTGAACACTTGTATTAAATCTTCTCCTGTATTTTATGGAATCTTGTTCACCTAAGCATATTCTTATGCTTTTACAGAATTAAGGGGTTGTTTGGTAGAGAGTATAAAAATAATGCTCAATAGAGTGTATTAGTAATGCTAGCAATAGTTTTACTTGCATTGGTTATGCATAGATTATTTCTTATGCATTGTTTGGTTTGGTGTGTTAAAAGTGGTATGCATTGTATAAAAATCTATGTTTACAAGAGTATCCTTCACAATTATGATGGAAAAAATGTAAAAAGTGCTTTTTGAGGGGTAATTGAGTCATTATTAAATTTTTTGCATTGCTAATACCTAGAAATTCATGGTATTAGTAATACACTCCTCAATAGTCAATACACAATAGAGTGTGTAACTAATGCTTACATTAGTTATATATAGCATGAAAAAATGCTCAAACAAGGGCCTACTAATACACATTAGCTAATGCATGCATTATTTTTGCTATTACATTCTACCAAATGACCCCTAAGTGAAGAAACATAGTGTTTTGCTTCCTAATGTATATATATTGCACCCAAATAGTTAGCACATGTTTAGAAAACACTGTAGATTAGATGTCAACTTAAGACCATTGTCCCTAGAATGTATGACCAAGGTTTCATTTGTAGAAAAGTGGCCTCTGGAGAGGCTCATGTTAATCTTAGTTTCCATCTGCAGACTACTTTTTGCAGCTGCCTTACTACCATATACATACTCACAACAAAAGTAATTCTTAATTACTATATGCAAACCACATGCTTTGTCAATATTGTTTGTGGTTGAATCATTTAGGAGAAAGGAGAAGTATTTCATATGATGGTAACCATGATCTGTCCTGTACATATTTGGACCAGTGATGTTACAACTTCACACTTTGGCTAAACATGTGCATAGGATGCTTATCAAACATATATACAACACAAAATTACACCAGATCCACGTTTCCACTTCTTGTGCATCCTTTTCTCTTTTATATTCCTAGATTAAGAAAAGTAGCTAGAAGTAATTCTCTTAAGAATTTTTTTTTTTTATGGTAAACCTGTTGTCAAACCCACCAAGGAGCTCCATATTGATCCTATTCCTCCTTATCTCTCTTGTTGGCTCGATTCCTCAACCTTATGGTTGGAGGTGGAGGGTTCTTACCATTAGGTTATCCCTCGCATCTCAAAGTCTTCATAAAGTCAATCGGGGAAGTTTAGCTTGGGACATGACTACCGAAAAGGATAAATATTGTTGTCTTATGGATAATGAGATATCACAATATGAAGAAATCAAACAATAAGATAAAGCATTTAAACCTTCTATGGAACCAGGGCCTGTAGTGTAACACAATCTGTGCATGTATACTAGTTTTTAGGAAATATTGTCGTTCATGGTCTTGAGAACAAACTCCTCTCATGATTGTTTTGTTGATAAGTTTTCACGATTGTCATGGCTTTTTTTCTGGCATTAATGTGGGTACCGATGTGTACTAGGAGCTAAGACGACTGGTGGCTTATTCAACTAGCAGTGCGAATTTGTTGACCAAACTGAT</genome_strand>
        <mrna_strand>AAAAACTGCATTTCTTCTTAGAATTGCTGAGAG....................................................................................TCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAA.........................................................................................................................................GTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCAAGATCAATGCTTTAAGGGGTCGTTATCCTATATATGGACCAATAGTTCG........................................................................GCTAGCTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTCAAATCTTTTCTTGAGACCTTTGCCATTTGAACCTCCTTTCTCCCGAATAACAGGATTTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTACGATTATTATCGGAATATGATTGGGCCTTTTCTCCCTTAATCGTTGATTTTGATGGTGACTTTTCAACTGAGGAGAAAAATAAAATTAAT.................................................................................................................GAGAATTTCATGAGAAGTAGAGAAGAGCATGAAAAGGACACACAGAAATCAAGTCCTGCAATGTTTTTAGCTACTAAATATGACGTTGCATCTGAAGCTTGGACAAGATCCTCACCAACTACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAAGACGACTGGTGGCTTTTTCAACTAGCAGTGCGAATTTGTTGACCAAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At2g18400" ref_strand="+" ref_description="C2_At2g18400">
      <seq>cttctcttaggcccaacttttttaatttcttgtgttgacgaacagagccctcggaaagctccactgaccggtgaactgcggatctccggcggtttttaggtttgctgaggtagcgatacagagaaagcctgctgattgataaaagtcatccaatggaagctaaattcttccgctttctcaagattgttggagttggtttcaaggctagggcagaatcagaaggtcgtctcttgtaccttaagctgggttacagccatgaggttgaactgaccgtgcctcctgcagttcgtgtcttctgtttcaaacccaatgtggtttgctgcactgggattgacaagtatagggtacaccaatttgctgcctctgtaaggagctgtaaacctcctgaagtttacaagggcaaaggtattatgtacattgatgaagtgataaaaaagaagcagggaaagaaatcaaaatgagaacccattaatcatggttctttcttgggcttggtactttttatgatgctagacaattttcctttaattatctttcctatttgtaatttcctaatgtaattttgttttctgactgctttggtatttttaaaagttagaggagttgaagatcttttaccttggtcacggaagttgctaaacatctcaatgacagtttttgtatcaacttttttcatcctttcaaatgctacaaataagtgatggacggtgttgatgaatttgtggtctttatatccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0074A14-R0IXZ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0074A14.2" temp_strand="-" temp_description="C02HBa0074A14.2  AC215378.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0074A14 sequenced_by:kribb upload_account_name:korea">
        <position start="99572" stop="3586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99272" g_stop="99142" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99141" i_stop="96807" i_length="2335">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96806" g_stop="96197" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="741" r_length="610" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96196" i_stop="96121" i_length="76">
            <donor d_prob="0.706" d_score="0.94"/>
            <acceptor a_prob="0.554" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96120" g_stop="96111" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="751" r_length="10" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0074A14.2" gen_strand="-" ref_id="C2_At2g18400" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0074A14.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At2g18400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99272" e_stop="99142"/>
          <exon e_start="96806" e_stop="96197"/>
          <exon e_start="96120" e_stop="96111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTTAGGCCCAACTTTTTTAATTTCTTGTGTTGACGAACAGAGCCCTCGGAAAGCTCCACTGACCGGTGAACTGCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTGGTATGCTGTTGTTCTCATTCTTATTAGTTTCTCCTCTTTCTCATCGAAATGAATTGCTCGTTATTTGCTTAGGTTTTGTCTTTAATTAATATCTGAAAATTGTCATGCATATGAGGTGTTCGATGAAATTCATTTTTAATGTGATGTTTCTGAAATGAGATTGTTATTTCCGCCAGAAAAGTCAATCTTCACTAGGCTTCTTTTCTAGTTTTGTGTGATTTTGTTGTTTTCAGTAGACAGTTACTGACTGTTTTGGTGAGTGATAATCATAGTTACGTCTCAGGCGATTGTCATGCCATCATGCCGCTAGAAGAAATCCCTTAATGAATTTATTTGAATATTACGCTTCTGAAGTGAGAGTATGGGATAACAATTTATTCGTAGTGGTCGAATAAGTCCCTGCTCCACTCATTGGCAAGTTAGCTGAACTCATGACTGCTCCTGGGGGTTTGGTAAATGTTATTTCTGCTGACTTAAACAAGTTTGCGAAACACAAAATGCTGATTTAGAATCGGCATAATCTGTAATACTTGAAGATCAACAACCAATTCCTCTTAGACTAGCTCTTAAACCGTTCTTTTTCTTTTTCGATTTTGGTTTTCATTTTCCTAATTAGCTATTCTTTGCATCTTGAGAAGGTTTAGGAATGGTTGTTGTTGCTCATCATTTGAGTTTTTTAATTGGTCATATATCTAATTGTAGGAGTTAATTTTACCCCTTTACCCTTCATTATATTACATATCCACATCAGAAGAAACCCCTGCTTGTTCCCAGTTCCCCTGAAGTGTGAACTACATAAAATCTACTGATCATAGATTGTAAATCAACCACCTGCTTGTGAAACTCAAAGAATGATGGAGAGTTATTGAGCAAGTTGACATGCTAATAGGTGAGAAATTAAGCATGATGCTATTCCATGGTAATAAAGAATAAAAACATGGTAATACTGAAGAATACACCATTACCATTTTCAAAAAAAAAAGAAGAATAAAAACATGGATACAATTTAACAGTTACTTATGTTAGAAAACAAACAAACATGGATACAGTTTCTATGGAGGACATGCTCCTGCTAGAGTACAACAAAGCATAACAATAGGTTGATTATATGCACATGCTTTAATTGTTAATCTTATTTTAAAATTAGTCATCAGCCAATTTTCAAAGATTATATCAGAGTCATTTTAAAAGTGGTCCAGTTCTTTTCATTTAGTAGTAGAACGAAAGATCTGCTTCACCTGTTGGTACTAATGAAATTTGAATTGATTTTCTTGCTAAAGACATTTAAAAAATTCTTAATGAACATATGTTGCCAGTGAAAGGAATAATGCAATATGCTCGGTTCGAGTCTAGGGTCTATCAGAAACAACCTGTCTACCTCCTAAGGTAGGTGTAATGGCATACACTCTCCCCTCCCCAGGCCAGATACCACTTGTGAATTACACTGCGTGAGTTGTTGTTCTTGTTGGCCAGTGCCTGTGGTTCTTCTTCCGCCATCTCTCCATCGGATAAGGAAAACTGAAATTAGTCCCTGGAGCTACTGAAAGCAAATTATGCTGAAGAAGAGTGTAAAAGTGCTTAGACAAACTATTCAGAAGTGAAAACAAACTGTCTGAATTGATTTTATGAGTTAATTATCTGTATTTGTCATTTATTTCTTGAAAACAAAATCTTCCCCCATTTTTGGATCAAAAAGGAAAATCACTTTGCACACCCAAGGGACAGCCTAGTTGTCAATGAAGTGGGTTGAGCACCACAAGGTCTTAGGTTCAAATACTAGCCCAGCAGAGACAAAAAACCTATGTGATTTATTCCCATATGTTTAGCCTTCGTGACATAGTTACTAGTACATGTTGCTGGTAGAAGGTAATATGTATCCCGTGGAATCAGTCGAGATGTACACAAGTTGGTCTGGACACCATGATTATCAAAAAGAAAAAAAAGAAGTAAAATCAATTTAGTTTTCTTCCCTTCCTTGAGCAGTTTTCCTTTGTGTAGCCAAGAGACTAGTCAGATTTTCAGTCACAAAGTGGCATTGCATTTCCTTCTCTACTGTTGTGGTTGTTTTTCCCGAGTATTAGTCACAAACCATTATATTAGATGTCCTAACTTTAGAATTAATACTTGGCAGGTTTGTCTCCGATAGTGGAAAAAGAATGTTGCTGTTGTATTATCTTTTGAAACTGATTTTTTTTTTTTGAAACTGAAATTTGCTGCTGTTATATTATTGTCTAGGTGTTTTTCTTATTTGGCATGTTACGGTTGTATTATTGTCAAGGTCTTTTTCTTGTTTGGCCTAGTAATGTAGCTTTTGTCATGTCATCTCCTATTTCAGCTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTTCCTATTTGTAATTTCCTAATGTAATTTTGTTTTCTGACTGCTTTGGTATTTTTAAAAGTTAGAGGAGTTGAAGATCTTTTACCTTGGTCACGGAAGTTGCTAAACATCTCAATGACAGTTTTTGTATCAACTTTTTTCATCCTTTCAAATGCTACAAATAAGTGATGGACGGTGTTGATGAATTTGTGGTCTTTATATCCAGATTGTACTATGCTTCTATAAATATTTTTTGTTAAATTTCATCAGTGTTTTTATAACGTAAAAAAAGTGTGTTAATGTAGTCAGAGAACG</genome_strand>
        <mrna_strand>CTTCTCTTAGGCCCAACTTTTTTAATTTCTTGTGTTGACGAACAGAGCCCTCGGAAAGCTCCACTGACCGGTGAACTGCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTTCCTATTTGTAATTTCCTAATGTAATTTTGTTTTCTGACTGCTTTGGTATTTTTAAAAGTTAGAGGAGTTGAAGATCTTTTACCTTGGTCACGGAAGTTGCTAAACATCTCAATGACAGTTTTTGTATCAACTTTTTTCATCCTTTCAAATGCTACAAATAAGTGATGGACGGTGTTGATGAATTTGTGGTCTTTATATCCAAAAA............................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="30191" PGL_stop="29603"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30191" e_stop="29603"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30191" e_stop="29603" e_length="589"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30191" stop="29603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTGCAAATAAAAAAATGGTGAACTTGGTTGAAGCACAAAAACCATTGTTACATGGCCTAATGAAATTAGCTGGAATCAGACCTCATAGTATAGAGATAGAACCAGGCACAATTATGAATTTTTGGGTTCCTTCTGAAACCATAATTCAAAAAACGAAGAAAAACAAAAAAATCACAACCACTACTCCTCTCTCCAACAACCAATATGCTATTTCCCCTGATTCCACCACCGAACCCGACCCGAACAAACCCGTGGTCGTACTAATCCACGGCTTTGCCGGCGAAGGAATAGTGACGTGGCAATTTCAAATCGGTGCATTAACTAAAAAATACTCTGTTTATGTACCGGACCTACTTTTCTTCGGCGGATCAGTTACGGATAGCTCCGATAGATCGCCGGGTTTTCAAGCAGAGTGTTTGGGTAAAGGGCTGAGGAAATTAGGCGTGGAAAAATGCGTAGTGGTTGGATTTAGTTATGGAGGAATGGTGGCGTTTAAGATGGCGGAAATGTTTCCAGATTTAGTTGAGGCGTTGGTGGTGTCTGGATCGATATTAGCGATGACTGATTCCATTAGCACTACCACGCT</gDNA_template>
            <first_frame> F  L  Q  I  K  K  W  *  T  W  L  K  H  K  N  H  C  Y  M  A  *  *  N  *  L  E  S  D  L  I  V  *  R  *  N  Q  A  Q  L  *  I  F  G  F  L  L  K  P  *  F  K  K  R  R  K  T  K  K  S  Q  P  L  L  L  S  P  T  T  N  M  L  F  P  L  I  P  P  P  N  P  T  R  T  N  P  W  S  Y  *  S  T  A  L  P  A  K  E  *  *  R  G  N  F  K  S  V  H  *  L  K  N  T  L  F  M  Y  R  T  Y  F  S  S  A  D  Q  L  R  I  A  P  I  D  R  R  V  F  K  Q  S  V  W  V  K  G  *  G  N  *  A  W  K  N  A  *  W  L  D  L  V  M  E  E  W  W  R  L  R  W  R  K  C  F  Q  I  *  L  R  R  W  W  C  L  D  R  Y  *  R  *  L  I  P  L  A  L  P  R  </first_frame>
            <second_frame>  S  C  K  *  K  N  G  E  L  G  *  S  T  K  T  I  V  T  W  P  N  E  I  S  W  N  Q  T  S  *  Y  R  D  R  T  R  H  N  Y  E  F  L  G  S  F  *  N  H  N  S  K  N  E  E  K  Q  K  N  H  N  H  Y  S  S  L  Q  Q  P  I  C  Y  F  P  *  F  H  H  R  T  R  P  E  Q  T  R  G  R  T  N  P  R  L  C  R  R  R  N  S  D  V  A  I  S  N  R  C  I  N  *  K  I  L  C  L  C  T  G  P  T  F  L  R  R  I  S  Y  G  *  L  R  *  I  A  G  F  S  S  R  V  F  G  *  R  A  E  E  I  R  R  G  K  M  R  S  G  W  I  *  L  W  R  N  G  G  V  *  D  G  G  N  V  S  R  F  S  *  G  V  G  G  V  W  I  D  I  S  D  D  *  F  H  *  H  Y  H  A </second_frame>
            <third_frame>   L  A  N  K  K  M  V  N  L  V  E  A  Q  K  P  L  L  H  G  L  M  K  L  A  G  I  R  P  H  S  I  E  I  E  P  G  T  I  M  N  F  W  V  P  S  E  T  I  I  Q  K  T  K  K  N  K  K  I  T  T  T  T  P  L  S  N  N  Q  Y  A  I  S  P  D  S  T  T  E  P  D  P  N  K  P  V  V  V  L  I  H  G  F  A  G  E  G  I  V  T  W  Q  F  Q  I  G  A  L  T  K  K  Y  S  V  Y  V  P  D  L  L  F  F  G  G  S  V  T  D  S  S  D  R  S  P  G  F  Q  A  E  C  L  G  K  G  L  R  K  L  G  V  E  K  C  V  V  V  G  F  S  Y  G  G  M  V  A  F  K  M  A  E  M  F  P  D  L  V  E  A  L  V  V  S  G  S  I  L  A  M  T  D  S  I  S  T  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30189" stop="29605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LANKKMVNLVEAQKPLLHGLMKLAGIRPHSIEIEPGTIMNFWVPSETIIQKTKKNKKITTTTPLSNNQYAISPDSTTEPDPNKPVVVLIHGFAGEGIVTWQFQIGALTKKYSVYVPDLLFFGGSVTDSSDRSPGFQAECLGKGLRKLGVEKCVVVGFSYGGMVAFKMAEMFPDLVEALVVSGSILAMTDSISTTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="68628" PGL_stop="64285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68628" e_stop="68596"/>
            <exon e_start="68511" e_stop="68387"/>
            <exon e_start="68249" e_stop="68129"/>
            <exon e_start="68056" e_stop="67919"/>
            <exon e_start="66195" e_stop="66099"/>
            <exon e_start="65985" e_stop="65860"/>
            <exon e_start="64343" e_stop="64285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.820" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.537" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.375" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.901" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68628" e_stop="68596" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.820" acc_prob="0.979">
            <gDNA_intron_boundary i_start="68595" i_stop="68512" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68511" e_stop="68387" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.921" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68386" i_stop="68250" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68249" e_stop="68129" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.537" acc_prob="0.985">
            <gDNA_intron_boundary i_start="68128" i_stop="68057" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68056" e_stop="67919" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.946">
            <gDNA_intron_boundary i_start="67918" i_stop="66196" i_length="1723"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66195" e_stop="66099" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.375" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66098" i_stop="65986" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65985" e_stop="65860" e_length="126"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.901">
            <gDNA_intron_boundary i_start="65859" i_stop="64344" i_length="1516"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="64343" e_stop="64285" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68628" stop="68596"/>
              <exon start="68511" stop="68387"/>
              <exon start="68249" stop="68129"/>
              <exon start="68056" stop="67919"/>
              <exon start="66195" stop="66099"/>
              <exon start="65985" stop="65860"/>
              <exon start="64343" stop="64285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g63810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACTGCATTTCTTCTTAGAATTGCTGAGAG : TCTGCAGAACAATTGGGGGATGATGTTTACAGCTACAGAAGATGATGTAGATGTTCTAATGTCTGGCTATGCATTCCGCCTTAAAATTTCTCATGAAAGGGCTCTTGGTCTGGTGACTGGGCAAA : GTAATAACAGTCGACATCAATGGAGCCTCTCTGCTGACAGAAAACTTCTTCTGCAACACCAACATGCGAGCAAGATCAATGCTTTAAGGGGTCGTTATCCTATATATGGACCAATAGTTCG : GCTAGCTAAAAGATGGGTCTCTGCACATCTATTATCCACGGTGCTGACAGAGGAGGCAGTTGAACTATTGGTTTCAAATCTTTTCTTGAGACCTTTGCCATTTGAACCTCCTTTCTCCCGAATAACAGGATTTTTGAG : GTTCTTACGATTATTATCGGAATATGATTGGGCCTTTTCTCCCTTAATCGTTGATTTTGATGGTGACTTTTCAACTGAGGAGAAAAATAAAATTAAT : GAGAATTTCATGAGAAGTAGAGAAGAGCATGAAAAGGACACACAGAAATCAAGTCCTGCAATGTTTTTAGCTACTAAATATGACGTTGCATCTGAAGCTTGGACAAGATCCTCACCAACTACAGCA : GAGCTAAGACGACTGGTGGCTTATTCAACTAGCAGTGCGAATTTGTTGACCAAACTGAT</gDNA_template>
            <first_frame> K  N  C  I  S  S  *  N  C  *  E  :  S  A  E  Q  L  G  D  D  V  Y  S  Y  R  R  *  C  R  C  S  N  V  W  L  C  I  P  P  *  N  F  S  *  K  G  S  W  S  G  D  W  A  K :   *  *  Q  S  T  S  M  E  P  L  C  *  Q  K  T  S  S  A  T  P  T  C  E  Q  D  Q  C  F  K  G  S  L  S  Y  I  W  T  N  S  S  :  A  S  *  K  M  G  L  C  T  S  I  I  H  G  A  D  R  G  G  S  *  T  I  G  F  K  S  F  L  E  T  F  A  I  *  T  S  F  L  P  N  N  R  I  F  E  :  V  L  T  I  I  I  G  I  *  L  G  L  F  S  L  N  R  *  F  *  W  *  L  F  N  *  G  E  K  *  N  *   : *  E  F  H  E  K  *  R  R  A  *  K  G  H  T  E  I  K  S  C  N  V  F  S  Y  *  I  *  R  C  I  *  S  L  D  K  I  L  T  N  Y  S   : R  A  K  T  T  G  G  L  F  N  *  Q  C  E  F  V  D  Q  T  D </first_frame>
            <second_frame>  K  T  A  F  L  L  R  I  A  E  S :   L  Q  N  N  W  G  M  M  F  T  A  T  E  D  D  V  D  V  L  M  S  G  Y  A  F  R  L  K  I  S  H  E  R  A  L  G  L  V  T  G  Q   : S  N  N  S  R  H  Q  W  S  L  S  A  D  R  K  L  L  L  Q  H  Q  H  A  S  K  I  N  A  L  R  G  R  Y  P  I  Y  G  P  I  V  R :   L  A  K  R  W  V  S  A  H  L  L  S  T  V  L  T  E  E  A  V  E  L  L  V  S  N  L  F  L  R  P  L  P  F  E  P  P  F  S  R  I  T  G  F  L  R :   F  L  R  L  L  S  E  Y  D  W  A  F  S  P  L  I  V  D  F  D  G  D  F  S  T  E  E  K  N  K  I  N  :  E  N  F  M  R  S  R  E  E  H  E  K  D  T  Q  K  S  S  P  A  M  F  L  A  T  K  Y  D  V  A  S  E  A  W  T  R  S  S  P  T  T  A  :  E  L  R  R  L  V  A  Y  S  T  S  S  A  N  L  L  T  K  L   </second_frame>
            <third_frame>   K  L  H  F  F  L  E  L  L  R   : V  C  R  T  I  G  G  *  C  L  Q  L  Q  K  M  M  *  M  F  *  C  L  A  M  H  S  A  L  K  F  L  M  K  G  L  L  V  W  *  L  G  K  :  V  I  T  V  D  I  N  G  A  S  L  L  T  E  N  F  F  C  N  T  N  M  R  A  R  S  M  L  *  G  V  V  I  L  Y  M  D  Q  *  F   : G  *  L  K  D  G  S  L  H  I  Y  Y  P  R  C  *  Q  R  R  Q  L  N  Y  W  F  Q  I  F  S  *  D  L  C  H  L  N  L  L  S  P  E  *  Q  D  F  *   : G  S  Y  D  Y  Y  R  N  M  I  G  P  F  L  P  *  S  L  I  L  M  V  T  F  Q  L  R  R  K  I  K  L  M :   R  I  S  *  E  V  E  K  S  M  K  R  T  H  R  N  Q  V  L  Q  C  F  *  L  L  N  M  T  L  H  L  K  L  G  Q  D  P  H  Q  L  Q  Q :   S  *  D  D  W  W  L  I  Q  L  A  V  R  I  C  *  P  N  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68627" stop="68596"/>
                    <exon start="68511" stop="68387"/>
                    <exon start="68249" stop="68129"/>
                    <exon start="68056" stop="67919"/>
                    <exon start="66195" stop="66099"/>
                    <exon start="65985" stop="65860"/>
                    <exon start="64343" stop="64287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTAFLLRIAESLQNNWGMMFTATEDDVDVLMSGYAFRLKISHERALGLVTGQSNNSRHQWSLSADRKLLLQHQHASKINALRGRYPIYGPIVRLAKRWVSAHLLSTVLTEEAVELLVSNLFLRPLPFEPPFSRITGFLRFLRLLSEYDWAFSPLIVDFDGDFSTEEKNKINENFMRSREEHEKDTQKSSPAMFLATKYDVASEAWTRSSPTTAELRRLVAYSTSSANLLTKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="99272" PGL_stop="96111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99272" e_stop="99142"/>
            <exon e_start="96806" e_stop="96197"/>
            <exon e_start="96120" e_stop="96111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.726" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.554" e_score="0.995"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99272" e_stop="99142" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.726" acc_prob="0.967">
            <gDNA_intron_boundary i_start="99141" i_stop="96807" i_length="2335"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="96806" e_stop="96197" e_length="610"/>
          </exon>
          <intron i_serial="2" don_prob="0.706" acc_prob="0.554">
            <gDNA_intron_boundary i_start="96196" i_stop="96121" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.400">
            <gDNA_exon_boundary e_start="96120" e_stop="96111" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99272" stop="99142"/>
              <exon start="96806" stop="96197"/>
              <exon start="96120" stop="96111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At2g18400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTCTTAGGCCCAACTTTTTTAATTTCTTGTGTTGACGAACAGAGCCCTCGGAAAGCTCCACTGACCGGTGAACTGCGGATCTCCGGCGGTTTTTAGGTTTGCTGAGGTAGCGATACAGAGAAAGCCTG : CTGATTGATAAAAGTCATCCAATGGAAGCTAAATTCTTCCGCTTTCTCAAGATTGTTGGAGTTGGTTTCAAGGCTAGGGCAGAATCAGAAGGTCGTCTCTTGTACCTTAAGCTGGGTTACAGCCATGAGGTTGAACTGACCGTGCCTCCTGCAGTTCGTGTCTTCTGTTTCAAACCCAATGTGGTTTGCTGCACTGGGATTGACAAGTATAGGGTACACCAATTTGCTGCCTCTGTAAGGAGCTGTAAACCTCCTGAAGTTTACAAGGGCAAAGGTATTATGTACATTGATGAAGTGATAAAAAAGAAGCAGGGAAAGAAATCAAAATGAGAACCCATTAATCATGGTTCTTTCTTGGGCTTGGTACTTTTTATGATGCTAGACAATTTTCCTTTAATTATCTTTCCTATTTGTAATTTCCTAATGTAATTTTGTTTTCTGACTGCTTTGGTATTTTTAAAAGTTAGAGGAGTTGAAGATCTTTTACCTTGGTCACGGAAGTTGCTAAACATCTCAATGACAGTTTTTGTATCAACTTTTTTCATCCTTTCAAATGCTACAAATAAGTGATGGACGGTGTTGATGAATTTGTGGTCTTTATATCCAGATT : TCAGAGAACG</gDNA_template>
            <first_frame> L  L  L  G  P  T  F  L  I  S  C  V  D  E  Q  S  P  R  K  A  P  L  T  G  E  L  R  I  S  G  G  F  *  V  C  *  G  S  D  T  E  K  A  C :   *  L  I  K  V  I  Q  W  K  L  N  S  S  A  F  S  R  L  L  E  L  V  S  R  L  G  Q  N  Q  K  V  V  S  C  T  L  S  W  V  T  A  M  R  L  N  *  P  C  L  L  Q  F  V  S  S  V  S  N  P  M  W  F  A  A  L  G  L  T  S  I  G  Y  T  N  L  L  P  L  *  G  A  V  N  L  L  K  F  T  R  A  K  V  L  C  T  L  M  K  *  *  K  R  S  R  E  R  N  Q  N  E  N  P  L  I  M  V  L  S  W  A  W  Y  F  L  *  C  *  T  I  F  L  *  L  S  F  L  F  V  I  S  *  C  N  F  V  F  *  L  L  W  Y  F  *  K  L  E  E  L  K  I  F  Y  L  G  H  G  S  C  *  T  S  Q  *  Q  F  L  Y  Q  L  F  S  S  F  Q  M  L  Q  I  S  D  G  R  C  *  *  I  C  G  L  Y  I  Q  I  :  S  E  N  </first_frame>
            <second_frame>  F  S  *  A  Q  L  F  *  F  L  V  L  T  N  R  A  L  G  K  L  H  *  P  V  N  C  G  S  P  A  V  F  R  F  A  E  V  A  I  Q  R  K  P   : A  D  *  *  K  S  S  N  G  S  *  I  L  P  L  S  Q  D  C  W  S  W  F  Q  G  *  G  R  I  R  R  S  S  L  V  P  *  A  G  L  Q  P  *  G  *  T  D  R  A  S  C  S  S  C  L  L  F  Q  T  Q  C  G  L  L  H  W  D  *  Q  V  *  G  T  P  I  C  C  L  C  K  E  L  *  T  S  *  S  L  Q  G  Q  R  Y  Y  V  H  *  *  S  D  K  K  E  A  G  K  E  I  K  M  R  T  H  *  S  W  F  F  L  G  L  G  T  F  Y  D  A  R  Q  F  S  F  N  Y  L  S  Y  L  *  F  P  N  V  I  L  F  S  D  C  F  G  I  F  K  S  *  R  S  *  R  S  F  T  L  V  T  E  V  A  K  H  L  N  D  S  F  C  I  N  F  F  H  P  F  K  C  Y  K  *  V  M  D  G  V  D  E  F  V  V  F  I  S  R  F :   Q  R  T </second_frame>
            <third_frame>   S  L  R  P  N  F  F  N  F  L  C  *  R  T  E  P  S  E  S  S  T  D  R  *  T  A  D  L  R  R  F  L  G  L  L  R  *  R  Y  R  E  S  L  :  L  I  D  K  S  H  P  M  E  A  K  F  F  R  F  L  K  I  V  G  V  G  F  K  A  R  A  E  S  E  G  R  L  L  Y  L  K  L  G  Y  S  H  E  V  E  L  T  V  P  P  A  V  R  V  F  C  F  K  P  N  V  V  C  C  T  G  I  D  K  Y  R  V  H  Q  F  A  A  S  V  R  S  C  K  P  P  E  V  Y  K  G  K  G  I  M  Y  I  D  E  V  I  K  K  K  Q  G  K  K  S  K  *  E  P  I  N  H  G  S  F  L  G  L  V  L  F  M  M  L  D  N  F  P  L  I  I  F  P  I  C  N  F  L  M  *  F  C  F  L  T  A  L  V  F  L  K  V  R  G  V  E  D  L  L  P  W  S  R  K  L  L  N  I  S  M  T  V  F  V  S  T  F  F  I  L  S  N  A  T  N  K  *  W  T  V  L  M  N  L  W  S  L  Y  P  D   : F  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0074A14.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99159" stop="99142"/>
                    <exon start="96806" stop="96477"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYRESLLIDKSHPMEAKFFRFLKIVGVGFKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKPNVVCCTGIDKYRVHQFAASVRSCKPPEVYKGKGIMYIDEVIKKKQGKKSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 98 chains have been computed
$ 
$ memory statistics:
$ 191176 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 63725 bytes was the average size of a spliced alignment
$ 8136 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2712 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 99 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:49:40
-->
