<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:57:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g65030" ref_strand="+" ref_description="C2_At1g65030">
      <seq>cttctctctcactctctctctctctctctctctcatcgctgcgtaaagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttccgtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtcggggaggttggcattgactgttggaagagatgaatgcatggctatggttaatttggttaggggaaggcgaagtttttattgcaggttgggaaaagaagcttctttagtaaattttagtgatggtggtgaaaagttttttatggttatggatgataagatttctgtacatgaatctgaagatgcgaaaactattctagagcttgatagtaagaagagggtgctttgtgccacttctgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacattactagtggaaaaattgcatatagcattgaagatgcacattctacccgtgtgaaaggcattgttgtgctacacaaaaacagtgatggtgatgctgaagatcatcaacatacagtagcatcagcatcatcagatggggtcatacgtgtttgggatgttcgcatgactaacaaagatgagccaaatccactggctgaggtcaatacaaaatccaggctgacttgtctggctggatcatcaatcaaatctatgaaaagaccagaggttggaaatactacttcaaatggacagcagctcgatgcaggtgaagaatcctagtgctgttgtaatttgctaatgacaatcacacagtgtatctgccatatttttcctttaaatttccccccttgaagttgttggaatcatatcaattttgctagttaaaggtggatcactcgatatatctattttgtaacgcgtgtatgattttaatgagcatgaagagttatttcttgcagttagtatttattttggttcctacacggatgggatttcaattttagtatattgctatgtatatgaatgtgcaatatgtgctgtcgtttanctcaaaaaaaaagaagnaaaaactcgagggggggcccgtacccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52475" stop="56109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52786" g_stop="53458" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="695" r_length="673" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54989" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="993" r_length="298" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54990" i_stop="55583" i_length="594">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55584" g_stop="55933" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="994" r_stop="1326" r_length="333" r_score="0.797"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1336" polyA_stop="1347"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="C2_At1g65030" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>1321</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At1g65030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52786" e_stop="53458"/>
          <exon e_start="54692" e_stop="54989"/>
          <exon e_start="55584" e_stop="55933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAATGTGAGTCTTCCTTTGCTATTTGAATTTTCCCCTCTTGAAATGTTTGCCTAATTTTAAATGATTCAGATAGTCACTGCCTTGACTGGTAACTTTTTGATTGTTTTAATTTTGCCTATTCTGTTCTGTGGTGCTAAATCATTTCATTTAAGGTAAAATGAGAATATTAAAGCTAAAAATTGATAAATTTTGAAAAAGGGACATTCTTTTTGGGATAAACTATAAAGAAGAGTCTCACATCAATTGACTGACACTGGAGTAGGAAATACAAAAAATTGCCAATCATTTCTCTTGGTTGATAAGTATAATAGAATCTACAATCTTTTCATTGGCATTTTTTTTTCAAAATTAACTATCGGTGATCCATATTGAAAGAAGAGGGGAATGCCTTTGAGTCTAATGCCAAAGATAGAGGACTATTTTGGGCCTTCTCTCGAGAAACAGTTCACAGGAGCTAACCAGCATCTTATCAATTTAGATTGAAAAAGAGTCACAATTGTAAACATAGGCCGACAGCTATAAATTGCACGGAGTTTGCTACCTAAATAATATGAAACACTCGACTGATTTGTTGTCATTGTCATTGTCATCTTTCAGCTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGC---TGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGA-A-ATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTTATTTTGGTTCTCATATCTCCCTAGTTAAGGTCCCCTTCGTACACGGATGGGACTTCATTTTTTGGTATTTTACTATGGATATGAATGTGCCTCTCTTGGCTGAC</genome_strand>
        <mrna_strand>TCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCCGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGCATGGCTATGGTTAATTTGGTTAGGGGAAGGCGAAGTTTTTATTGCAGGTTGGGAAAAGAAGCTTCTTTAGTAAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCGAAAACTATTCTAGAGCTTGATAGTAAGAAGAGGGTGCTTTGTGCCACTTCTGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAAATTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACATACAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATGAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCAATCAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAAAGACCAGAGGTTGGAAATACTACTTCAAATGGACAGCAGCTCGATGCAGGTGAAGAATCCTAGTGCTGTTGTAATTTGCTAATGACAATCACACAGTGTATCTGCCATATTTTTCCTTTAAATT--TCC-CCCCTTGAAGTTGTTGGAATCATATCAATTTTGCTAGTTAAAGGTGGATCACTCGATATATCTATTTTGTAA--CGCGTGTATGA-TT--TTAATGAGCATGAAGAGTTATTTCTTGCAG-T-TAGTAT-T---TA-TTTTGG-----TTCCTACACGGATGGGATTTCA-ATTTTAGTATATTGCTATGTATATGAATGTG-CAATATGTGCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g21620" ref_strand="-" ref_description="C2_At4g21620">
      <seq>gtgggttttggtggaaaatttgggcctggtggagggtttaatattcctgggcttggtggtggagtatttggtggtggatttggaggcccaaaaggtggatatggaaaaggtggagtcataaggtctagtgttgtgtgtaaagtaaaaggcccatgttttggtatgaaattaatatgtccagcaaaatgttataaatcatattctagtgctggaaaaggttatggttttggtggtggatctggtggatgtactatggattgcaagaagaaatgtcttgcttattgttaacccccaccccacccaaaaaaaaaataaaatatacctaagtaagttatttgttatatttatattacttataatatgtgttgtttggttgtatttgttttgtcatgtggaacaatatattatgttagctaagttctacatttttatgatacaagtaatagaattcatggtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="65365" stop="64305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65065" g_stop="64606" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="475"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="C2_At4g21620" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At4g21620" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65065" e_stop="64606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGTTTTGGTGGGATATTTGGGCCTGGTGGAGGGTTTAATATTCCTGGGCTTGGTGGTGGAGTATTTGGTGGTGGATTTGGAGGCCCAAAAGGTGGATATGGAAAAGGTGGAGTCATAAGGTCTAGTGTTGTGTGTAAAGTAAAAGGCCCATGTTTTGGTATGAAATTAATATGTCCAGCAAAATGTTATAAATCATATTCTAGTGCTGGAAAAGGTTATGGTTTTGGTGGTGGATCTGGTGGATGTACTATGGATTGCAAGAAGAAATGTCTTGCTTATTGTTAA-CCCCACCCCACCCAAAAAAAAAATAAAATATACCTAAGTAAGTTATTTGTTATATTTATATTACTTATAATATGTGTTGTTTGGTTGTATTTGTTTTGTCATGTGGAACAATATATTATGTTAGCTAAGTTCTACATTTTTATGATACAAGTAATAGAATTCATGGTGAAAA</genome_strand>
        <mrna_strand>GTGGGTTTTGGTGGAAAATTTGGGCCTGGTGGAGGGTTTAATATTCCTGGGCTTGGTGGTGGAGTATTTGGTGGTGGATTTGGAGGCCCAAAAGGTGGATATGGAAAAGGTGGAGTCATAAGGTCTAGTGTTGTGTGTAAAGTAAAAGGCCCATGTTTTGGTATGAAATTAATATGTCCAGCAAAATGTTATAAATCATATTCTAGTGCTGGAAAAGGTTATGGTTTTGGTGGTGGATCTGGTGGATGTACTATGGATTGCAAGAAGAAATGTCTTGCTTATTGTTAACCCCCACCCCACCCAAAAAAAAAATAAAATATACCTAAGTAAGTTATTTGTTATATTTATATTACTTATAATATGTGTTGTTTGGTTGTATTTGTTTTGTCATGTGGAACAATATATTATGTTAGCTAAGTTCTACATTTTTATGATACAAGTAATAGAATTCATGGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR407" ref_strand="+" ref_description="SSR407">
      <seq>caccatgaattctattacttgtatcataaaaatgtagaacttagctaacataatatattgttccacatgacaaaacaaatacaaccaaacaacacatattataagtaatataaatataacaaataacttacttaggtatattttattttttttttgggtgggggtggggttaacaataagcaagacatttcttcttgcaatccatagtacatccaccagatccaccaccaaaaccataaccttttccagcactagaatatgatttataacattttgctggacatattaatttcataccaaaacatgggccttttactttacacacaacactagaccttatgactccaccttttccatatccaccttttgggcctccaaatccaccaccaaatactccaccaccaagcccaggaatattaaaccctccaccaggcccaaattttccaccaaaacccacattgccaccgttattatttctgacttcgccactgcctttctttgtttttccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="64310" stop="65419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64610" g_stop="65119" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SSR407" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SSR407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64610" e_stop="65119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATGAATTCTATTACTTGTATCATAAAAATGTAGAACTTAGCTAACATAATATATTGTTCCACATGACAAAACAAATACAACCAAACAACACATATTATAAGTAATATAAATATAACAAATAACTTACTTAGGTATATTTTATTTTTTTTTTGGGT-GGGGTGGGGTTAACAATAAGCAAGACATTTCTTCTTGCAATCCATAGTACATCCACCAGATCCACCACCAAAACCATAACCTTTTCCAGCACTAGAATATGATTTATAACATTTTGCTGGACATATTAATTTCATACCAAAACATGGGCCTTTTACTTTACACACAACACTAGACCTTATGACTCCACCTTTTCCATATCCACCTTTTGGGCCTCCAAATCCACCACCAAATACTCCACCACCAAGCCCAGGAATATTAAACCCTCCACCAGGCCCAAATATCCCACCAAAACCCACATCGCCACCGTTATTATTTCTGACTTCGCCACTGCCTTTCTTTGTTTTTCCAAC</genome_strand>
        <mrna_strand>CACCATGAATTCTATTACTTGTATCATAAAAATGTAGAACTTAGCTAACATAATATATTGTTCCACATGACAAAACAAATACAACCAAACAACACATATTATAAGTAATATAAATATAACAAATAACTTACTTAGGTATATTTTATTTTTTTTTTGGGTGGGGGTGGGGTTAACAATAAGCAAGACATTTCTTCTTGCAATCCATAGTACATCCACCAGATCCACCACCAAAACCATAACCTTTTCCAGCACTAGAATATGATTTATAACATTTTGCTGGACATATTAATTTCATACCAAAACATGGGCCTTTTACTTTACACACAACACTAGACCTTATGACTCCACCTTTTCCATATCCACCTTTTGGGCCTCCAAATCCACCACCAAATACTCCACCACCAAGCCCAGGAATATTAAACCCTCCACCAGGCCCAAATTTTCCACCAAAACCCACATTGCCACCGTTATTATTTCTGACTTCGCCACTGCCTTTCTTTGTTTTTCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1532" ref_strand="+" ref_description="T1532">
      <seq>aactaacacctcaaaaattattataattctgggatcttgaaccaccaaaacaacccctagctactggttgagtaatttgattagaaaagatgggtgggtttgagctcaaatggtttgtaggagtagctgttgttctgatgatggttcaaaatattcttggttgggggaaagagggacactatattatctgcaaaattgctgaggaatatctaacagaagatgctttggctgcagtcaaagcattactcccagatcaagccggaggtgatcttgcagctgtctgctcctggcctgatgaggttcggcgccactaccactaccgctggagttctccgttacattatgtagatacacctgattttttgtgtaattacaaatattgccgagactgccatgacgggcatgggctcaaggacaggtgtgttacgggagcaatatacaactactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106502" stop="103916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106208" g_stop="106143" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="203" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="384" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104216" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="449" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="T1532" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="T1532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106208" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCA</genome_strand>
        <mrna_strand>AACTAACACCTCAAAAATTATTATAATTCTGGGATCTTGAACCACCAAAACAACCCCTAGCTACTG........................................................................................GTTGAGTAATTTGATTAGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACAGAAGATGCTTTGGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGGAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGTTCTCCGTTACATTATGTAGATACACCTGATTTTTTGTGTAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g21580" ref_strand="+" ref_description="C2_At4g21580">
      <seq>ttcaagaactagaatggaaacaaaatacaagaaagtcgtgtaaacctctccaactctctttccaaaaccttgttaactcagtgagtaaaattgattgtgattaaggatgaaggctgttgtaatcacaagccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaggctgctggcttgcgtagtagaagcccaaaaaacaaagctcaaattgtgagagaagtggaaaaaaatgtttggcctgcaattgcagcagggaaggtgaaaccggtggtgtacaagtacttccccttagcagaagctgctgaggctcaccagttaatggaaagcagcaaccacattggaaagattctgctcactgtttgaatgttgtaaaagagagattttcttgttcttagtgttaaaatagcctgtacttacagccagtccctcccccccccccccctccaaacatctgctgcatgtacactttgcaatgtttccaataaagcaaaaccttttttatgatttctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="108974" stop="113890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109274" g_stop="109631" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="538" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="620" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="728" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="887" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113246" g_stop="113590" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="888" r_stop="1232" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113591" i_stop="113830" i_length="240">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113831" g_stop="113840" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1233" r_stop="1242" r_length="10" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="C2_At4g21580" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g21580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109274" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113590"/>
          <exon e_start="113831" e_stop="113840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGAACAAGAATGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCCCCCCTCCAAACATCTGCTGCATGTACACTTTGCAATGTTTCCAATAAAGCAAAACCTTTTTTATGATTTCTCACTTTCCATCTTCTGAGTGCTTTAAGTTTTCGACGATTTTTCGATGTATATGTTTGAAATTGAAAGTATTTTTTAGAAACAAATTTGAACTACGAATCTTTATCCCTACAATATTTTCATGTTTTTTTTTTCTTCAAATAATATCCACTTGACATAACTTTAATTGTGCATTAACATTTGATAATGTAAATCAATACTCTAATCTTTAACTTTATTTTTTGTTGTTATTATTTATTAAAAGAAACTATAGA</genome_strand>
        <mrna_strand>TTCAAGAACTAGAATGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCCCCCCTCCAAACATCTGCTGCATGTACACTTTGCAATGTTTCCAATAAAGCAAAACCTTTTTTATGATTTCTCA................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g10580" ref_strand="+" ref_description="C2_At1g10580">
      <seq>gtttttgacagctggatatgataagtacattaagtattgggatacagaaacaggacaagtaattcaaaccttcacgacaggtaagataccctatgtggtgaggcttaatcctgatgaggataagcagaatgtacttttggccggtatgagtgataagaagattgtgcagtgggatataaacagtggacagattacacaagagtacgatcaacatctgggggcagttaatacaattacctttgtggataataataggaggtttgtgacctctagtgatgataaatcactacgtgtttgggaatatggtattccggttgttatcaagtatataagtgaaccccatatgcattccatgccatctatttctccccatccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttatagtacgcgagagagatttcagctgaataaaaagaaaagatttgctggacacattgtcgctggttatgcctgccaggtcaatttctcacctgatggacggtttgtcttctcaggagatggtgaaggcagatgctggttttgggaatggaaatcgtgtaaggcttcagaactctcagtgtcatgacggggtctgtattggtgcagagtggcatcctctggaacaaagtaaagttgctacttgtggttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="135382" stop="134105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135082" g_stop="134405" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="C2_At1g10580" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At1g10580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135082" e_stop="134405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTCAAGTGTCATGATGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGGAACAAAGTAAAGTTGCTACTTGTGGCTGGGA</genome_strand>
        <mrna_strand>GTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACCTTCACGACAGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGTACTTTTGGCCGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCTCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTATAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGAATGGAAATCGTGTAAGG-CTTCAGAACTCTC-AGTGTCATGACGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGGAACAAAGTAAAGTTGCTACTTGTGGTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="52786" PGL_stop="55933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52786" e_stop="53458"/>
            <exon e_start="54692" e_stop="54989"/>
            <exon e_start="55584" e_stop="55933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.757" e_score="0.964"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="0.983"/>
          <exon-only e_score="0.797"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="52786" e_stop="53458" e_length="673"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.757">
            <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="54692" e_stop="54989" e_length="298"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="54990" i_stop="55583" i_length="594"/>
          </intron>
          <exon e_serial="3" e_score="0.797">
            <gDNA_exon_boundary e_start="55584" e_stop="55933" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52786" stop="53458"/>
              <exon start="54692" stop="54989"/>
              <exon start="55584" stop="55933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g65030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATG : CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAAT : CTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTTATTTTGGTTCTCATATCTCCCTAGTTAAGGTCCCCTTCGTACACGGATGGGACTTCATTTTTTGGTATTTTACTATGGATATGAATGTGCCTCTCTTGGCTGAC</gDNA_template>
            <first_frame> S  L  S  L  I  A  A  *  S  Y  E  F  N  C  R  F  I  R  E  I  H  L  G  I  Q  V  E  I  P  Q  K  R  S  E  L  R  T  N  P  S  I  L  L  P  F  T  S  L  T  N  *  M  H  R  R  R  R  F  C  R  C  I  R  R  R  R  *  H  Y  Q  N  L  *  P  F  Y  L  L  R  N  W  V  T  T  P  L  R  H  R  Y  F  T  F  L  F  Y  P  F  F  I  L  L  P  S  *  P  Y  C  R  V  *  R  W  F  G  F  H  I  *  C  *  S  F  C  S  S  Q  D  G  *  S  A  S  *  G  S  E  F  Y  M  H  S  S  V  G  E  V  G  I  D  C  W  K  R  *  M  Y  G  Y  G  *  F  G  *  R  K  E  K  F  L  L  *  V  G  K  R  S  F  F  S  *  F  *  *  W  W  *  K  V  F  Y  G  Y  G  *  *  D  F  C  T  *  I  *  R  C  Q  S  Y  S  R  A  *  Q  *  E  E  G  A  L  C  H  L  W  D   : A  W  Y  F  V  Y  W  G  R  G  P  E  Y  *  S  L  G  H  Y  *  W  K  T  C  I  *  H  *  R  C  T  F  Y  P  C  E  R  H  C  C  A  T  Q  K  Q  *  W  *  C  *  R  S  S  T  H  S  S  I  S  I  I  R  W  G  H  T  C  L  G  C  S  H  D  *  Q  R  *  A  K  S  T  G  *  G  Q  Y  K  I  Q  A  D  L  S  G  W  I  I  H  Q  I :   Y  E  K  T  T  G  W  K  Y  Y  F  K  W  T  T  A  R  R  R  *  R  I  I  V  L  *  F  G  N  D  N  H  I  V  Y  L  P  Y  F  S  F  R  F  P  L  P  L  K  L  L  E  S  Y  Q  F  C  *  L  K  V  D  H  S  K  S  I  L  *  G  V  C  I  I  *  L  M  N  M  S  S  Y  L  F  W  F  S  Y  L  P  S  *  G  P  L  R  T  R  M  G  L  H  F  L  V  F  Y  Y  G  Y  E  C  A  S  L  G  *  </first_frame>
            <second_frame>  L  S  L  S  S  L  R  K  A  M  S  L  I  A  G  S  Y  E  R  F  I  W  G  F  K  L  R  S  L  K  N  D  Q  N  Y  E  L  T  P  L  F  S  F  P  S  H  L  S  P  I  K  C  T  A  V  A  G  S  A  A  V  S  G  G  A  D  D  T  I  K  I  Y  D  L  S  T  C  S  E  I  G  S  L  H  H  S  A  T  V  T  S  L  S  F  F  T  P  S  S  F  S  F  P  R  N  L  I  A  A  S  E  D  G  S  V  S  I  Y  D  A  D  P  F  V  H  L  K  T  V  K  V  H  R  K  A  V  N  S  I  C  I  H  P  S  G  R  L  A  L  T  V  G  R  D  E  C  M  A  M  V  N  L  V  R  G  R  R  S  F  Y  C  R  L  G  K  E  A  S  L  V  N  F  S  D  G  G  E  K  F  F  M  V  M  D  D  K  I  S  V  H  E  S  E  D  A  K  A  I  L  E  L  D  S  K  K  R  V  L  C  A  T  Y  G  M  :  H  G  I  L  F  T  G  G  E  D  R  S  I  K  A  W  D  I  T  S  G  K  L  A  Y  S  I  E  D  A  H  S  T  R  V  K  G  I  V  V  L  H  K  N  S  D  G  D  A  E  D  H  Q  H  I  V  A  S  A  S  S  D  G  V  I  R  V  W  D  V  R  M  T  N  K  D  K  P  N  P  L  A  E  V  N  T  K  S  R  L  T  C  L  A  G  S  S  I  K   : S  M  K  R  P  Q  V  G  N  T  T  S  N  G  Q  Q  L  D  A  G  E  E  S  *  C  C  N  L  V  M  T  I  T  *  C  I  C  H  I  F  P  L  D  S  P  S  P  *  S  C  W  N  H  I  N  F  V  S  *  K  L  I  T  R  N  L  F  C  K  A  C  V  L  F  N  *  *  I  *  A  V  I  Y  F  G  S  H  I  S  L  V  K  V  P  F  V  H  G  W  D  F  I  F  W  Y  F  T  M  D  M  N  V  P  L  L  A  D </second_frame>
            <third_frame>   S  L  S  H  R  C  V  K  L  *  V  *  L  Q  V  H  T  R  D  S  F  G  D  S  S  *  D  P  S  K  T  I  R  I  T  N  *  P  L  Y  S  P  S  L  H  I  S  H  Q  L  N  A  P  P  S  P  V  L  P  L  Y  P  A  A  P  M  T  L  S  K  S  M  T  F  L  L  A  Q  K  L  G  H  Y  T  T  P  P  P  L  L  H  F  P  F  L  P  L  L  H  S  P  S  L  V  T  L  L  P  R  L  K  M  V  R  F  P  Y  M  M  L  I  L  L  F  I  S  R  R  L  K  C  I  V  R  Q  *  I  L  Y  A  F  I  R  R  G  G  W  H  *  L  L  E  E  M  N  V  W  L  W  L  I  W  L  E  E  G  E  V  F  I  V  G  W  E  K  K  L  L  *  L  I  L  V  M  V  V  K  S  F  L  W  L  W  M  I  R  F  L  Y  M  N  L  K  M  P  K  L  F  *  S  L  T  V  R  R  G  C  F  V  P  L  M  G  C :   M  V  F  C  L  L  G  E  R  T  G  V  L  K  L  G  T  L  L  V  E  N  L  H  I  A  L  K  M  H  I  L  P  V  *  K  A  L  L  C  Y  T  K  T  V  M  V  M  L  K  I  I  N  T  *  *  H  Q  H  H  Q  M  G  S  Y  V  F  G  M  F  A  *  L  T  K  I  S  Q  I  H  W  L  R  S  I  Q  N  P  G  *  L  V  W  L  D  H  P  S  N  :  L  *  K  D  H  R  L  E  I  L  L  Q  M  D  N  S  S  T  Q  V  K  N  H  S  A  V  I  W  *  *  Q  S  H  S  V  S  A  I  F  F  L  *  I  P  P  P  P  E  V  V  G  I  I  S  I  L  L  V  K  S  *  S  L  E  I  Y  F  V  R  R  V  Y  Y  L  I  N  E  Y  E  Q  L  F  I  L  V  L  I  S  P  *  L  R  S  P  S  Y  T  D  G  T  S  F  F  G  I  L  L  W  I  *  M  C  L  S  W  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52787" stop="53458"/>
                    <exon start="54692" stop="54989"/>
                    <exon start="55584" stop="55654"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLSSLRKAMSLIAGSYERFIWGFKLRSLKNDQNYELTPLFSFPSHLSPIKCTAVAGSAAVSGGADDTIKIYDLSTCSEIGSLHHSATVTSLSFFTPSSFSFPRNLIAASEDGSVSIYDADPFVHLKTVKVHRKAVNSICIHPSGRLALTVGRDECMAMVNLVRGRRSFYCRLGKEASLVNFSDGGEKFFMVMDDKISVHESEDAKAILELDSKKRVLCATYGMHGILFTGGEDRSIKAWDITSGKLAYSIEDAHSTRVKGIVVLHKNSDGDAEDHQHIVASASSDGVIRVWDVRMTNKDKPNPLAEVNTKSRLTCLAGSSIKSMKRPQVGNTTSNGQQLDAGEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="65065" PGL_stop="64606"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65065" e_stop="64606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="65065" e_stop="64606" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65065" stop="64606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g21620" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGGTTTTGGTGGGATATTTGGGCCTGGTGGAGGGTTTAATATTCCTGGGCTTGGTGGTGGAGTATTTGGTGGTGGATTTGGAGGCCCAAAAGGTGGATATGGAAAAGGTGGAGTCATAAGGTCTAGTGTTGTGTGTAAAGTAAAAGGCCCATGTTTTGGTATGAAATTAATATGTCCAGCAAAATGTTATAAATCATATTCTAGTGCTGGAAAAGGTTATGGTTTTGGTGGTGGATCTGGTGGATGTACTATGGATTGCAAGAAGAAATGTCTTGCTTATTGTTAACCCCACCCCACCCAAAAAAAAAATAAAATATACCTAAGTAAGTTATTTGTTATATTTATATTACTTATAATATGTGTTGTTTGGTTGTATTTGTTTTGTCATGTGGAACAATATATTATGTTAGCTAAGTTCTACATTTTTATGATACAAGTAATAGAATTCATGGTGAAAA</gDNA_template>
            <first_frame> V  G  F  G  G  I  F  G  P  G  G  G  F  N  I  P  G  L  G  G  G  V  F  G  G  G  F  G  G  P  K  G  G  Y  G  K  G  G  V  I  R  S  S  V  V  C  K  V  K  G  P  C  F  G  M  K  L  I  C  P  A  K  C  Y  K  S  Y  S  S  A  G  K  G  Y  G  F  G  G  G  S  G  G  C  T  M  D  C  K  K  K  C  L  A  Y  C  *  P  H  P  T  Q  K  K  N  K  I  Y  L  S  K  L  F  V  I  F  I  L  L  I  I  C  V  V  W  L  Y  L  F  C  H  V  E  Q  Y  I  M  L  A  K  F  Y  I  F  M  I  Q  V  I  E  F  M  V  K  </first_frame>
            <second_frame>  W  V  L  V  G  Y  L  G  L  V  E  G  L  I  F  L  G  L  V  V  E  Y  L  V  V  D  L  E  A  Q  K  V  D  M  E  K  V  E  S  *  G  L  V  L  C  V  K  *  K  A  H  V  L  V  *  N  *  Y  V  Q  Q  N  V  I  N  H  I  L  V  L  E  K  V  M  V  L  V  V  D  L  V  D  V  L  W  I  A  R  R  N  V  L  L  I  V  N  P  T  P  P  K  K  K  I  K  Y  T  *  V  S  Y  L  L  Y  L  Y  Y  L  *  Y  V  L  F  G  C  I  C  F  V  M  W  N  N  I  L  C  *  L  S  S  T  F  L  *  Y  K  *  *  N  S  W  *  K </second_frame>
            <third_frame>   G  F  W  W  D  I  W  A  W  W  R  V  *  Y  S  W  A  W  W  W  S  I  W  W  W  I  W  R  P  K  R  W  I  W  K  R  W  S  H  K  V  *  C  C  V  *  S  K  R  P  M  F  W  Y  E  I  N  M  S  S  K  M  L  *  I  I  F  *  C  W  K  R  L  W  F  W  W  W  I  W  W  M  Y  Y  G  L  Q  E  E  M  S  C  L  L  L  T  P  P  H  P  K  K  K  *  N  I  P  K  *  V  I  C  Y  I  Y  I  T  Y  N  M  C  C  L  V  V  F  V  L  S  C  G  T  I  Y  Y  V  S  *  V  L  H  F  Y  D  T  S  N  R  I  H  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65065" stop="64778"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGFGGIFGPGGGFNIPGLGGGVFGGGFGGPKGGYGKGGVIRSSVVCKVKGPCFGMKLICPAKCYKSYSSAGKGYGFGGGSGGCTMDCKKKCLAYC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="64610" PGL_stop="65119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64610" e_stop="65119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="64610" e_stop="65119" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64610" stop="65119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCATGAATTCTATTACTTGTATCATAAAAATGTAGAACTTAGCTAACATAATATATTGTTCCACATGACAAAACAAATACAACCAAACAACACATATTATAAGTAATATAAATATAACAAATAACTTACTTAGGTATATTTTATTTTTTTTTTGGGTGGGGTGGGGTTAACAATAAGCAAGACATTTCTTCTTGCAATCCATAGTACATCCACCAGATCCACCACCAAAACCATAACCTTTTCCAGCACTAGAATATGATTTATAACATTTTGCTGGACATATTAATTTCATACCAAAACATGGGCCTTTTACTTTACACACAACACTAGACCTTATGACTCCACCTTTTCCATATCCACCTTTTGGGCCTCCAAATCCACCACCAAATACTCCACCACCAAGCCCAGGAATATTAAACCCTCCACCAGGCCCAAATATCCCACCAAAACCCACATCGCCACCGTTATTATTTCTGACTTCGCCACTGCCTTTCTTTGTTTTTCCAAC</gDNA_template>
            <first_frame> H  H  E  F  Y  Y  L  Y  H  K  N  V  E  L  S  *  H  N  I  L  F  H  M  T  K  Q  I  Q  P  N  N  T  Y  Y  K  *  Y  K  Y  N  K  *  L  T  *  V  Y  F  I  F  F  L  G  G  V  G  L  T  I  S  K  T  F  L  L  A  I  H  S  T  S  T  R  S  T  T  K  T  I  T  F  S  S  T  R  I  *  F  I  T  F  C  W  T  Y  *  F  H  T  K  T  W  A  F  Y  F  T  H  N  T  R  P  Y  D  S  T  F  S  I  S  T  F  W  A  S  K  S  T  T  K  Y  S  T  T  K  P  R  N  I  K  P  S  T  R  P  K  Y  P  T  K  T  H  I  A  T  V  I  I  S  D  F  A  T  A  F  L  C  F  S  N </first_frame>
            <second_frame>  T  M  N  S  I  T  C  I  I  K  M  *  N  L  A  N  I  I  Y  C  S  T  *  Q  N  K  Y  N  Q  T  T  H  I  I  S  N  I  N  I  T  N  N  L  L  R  Y  I  L  F  F  F  W  V  G  W  G  *  Q  *  A  R  H  F  F  L  Q  S  I  V  H  P  P  D  P  P  P  K  P  *  P  F  P  A  L  E  Y  D  L  *  H  F  A  G  H  I  N  F  I  P  K  H  G  P  F  T  L  H  T  T  L  D  L  M  T  P  P  F  P  Y  P  P  F  G  P  P  N  P  P  P  N  T  P  P  P  S  P  G  I  L  N  P  P  P  G  P  N  I  P  P  K  P  T  S  P  P  L  L  F  L  T  S  P  L  P  F  F  V  F  P   </second_frame>
            <third_frame>   P  *  I  L  L  L  V  S  *  K  C  R  T  *  L  T  *  Y  I  V  P  H  D  K  T  N  T  T  K  Q  H  I  L  *  V  I  *  I  *  Q  I  T  Y  L  G  I  F  Y  F  F  F  G  W  G  G  V  N  N  K  Q  D  I  S  S  C  N  P  *  Y  I  H  Q  I  H  H  Q  N  H  N  L  F  Q  H  *  N  M  I  Y  N  I  L  L  D  I  L  I  S  Y  Q  N  M  G  L  L  L  Y  T  Q  H  *  T  L  *  L  H  L  F  H  I  H  L  L  G  L  Q  I  H  H  Q  I  L  H  H  Q  A  Q  E  Y  *  T  L  H  Q  A  Q  I  S  H  Q  N  P  H  R  H  R  Y  Y  F  *  L  R  H  C  L  S  L  F  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64878" stop="65117"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFAGHINFIPKHGPFTLHTTLDLMTPPFPYPPFGPPNPPPNTPPPSPGILNPPPGPNIPPKPTSPPLLFLTSPLPFFVFP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64898" stop="65119"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHTKTWAFYFTHNTRPYDSTFSISTFWASKSTTKYSTTKPRNIKPSTRPKYPTKTHIATVIISDFATAFLCFSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="106208" PGL_stop="104216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106208" e_stop="106143"/>
            <exon e_start="106054" e_stop="105918"/>
            <exon e_start="104757" e_stop="104577"/>
            <exon e_start="104280" e_stop="104216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.879"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.311" acc_prob="0.995" e_score="0.967"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="106208" e_stop="106143" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="106054" e_stop="105918" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="104757" e_stop="104577" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.311" acc_prob="0.995">
            <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104280" e_stop="104216" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106208" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1532" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTG : GTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAG : GAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC : GAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCA</gDNA_template>
            <first_frame> L  F  H  L  K  N  Y  C  H  S  W  I  L  N  H  Q  N  N  P  *  L  L  :  V  E  *  F  D  W  K  R  W  V  G  L  S  S  N  G  L  *  E  *  L  L  F  *  *  W  F  K  I  F  L  V  G  G  K  R  D  T  I  L  S  A  K  L  L  R :   N  I  *  Q  K  M  L  *  L  Q  S  K  H  Y  S  Q  I  K  P  K  V  I  L  Q  L  S  A  P  G  L  M  R  F  G  A  T  T  T  T  A  G  A  L  H  Y  I  M  *  I  H  L  I  S  C  A  I  T  N  I  A  :  E  T  A  M  T  G  M  G  S  R  T  G  V  L  R  E  Q  Y  T  T  T   </first_frame>
            <second_frame>  Y  S  T  S  K  I  I  V  I  L  G  S  *  T  T  K  T  T  P  S  Y  W :   L  S  N  L  I  G  K  D  G  W  V  *  A  Q  M  V  C  R  S  S  C  C  S  D  D  G  S  K  Y  S  W  L  G  E  R  G  T  L  Y  Y  L  Q  N  C  *   : G  I  S  N  R  R  C  F  S  C  S  Q  S  I  T  P  R  S  S  R  R  *  S  C  S  C  L  L  L  A  *  *  G  S  A  P  L  P  L  P  L  E  L  S  I  T  L  C  R  Y  T  *  F  L  V  Q  L  Q  I  L  P :   R  L  P  *  R  A  W  A  Q  G  Q  V  C  Y  G  S  N  I  Q  L  L  </second_frame>
            <third_frame>   I  P  P  Q  K  L  L  S  F  L  D  L  E  P  P  K  Q  P  L  A  T   : G  *  V  I  *  L  E  K  M  G  G  F  E  L  K  W  F  V  G  V  A  V  V  L  M  M  V  Q  N  I  L  G  W  G  K  E  G  H  Y  I  I  C  K  I  A  E  :  E  Y  L  T  E  D  A  L  A  A  V  K  A  L  L  P  D  Q  A  E  G  D  L  A  A  V  C  S  W  P  D  E  V  R  R  H  Y  H  Y  R  W  S  S  P  L  H  Y  V  D  T  P  D  F  L  C  N  Y  K  Y  C   : R  D  C  H  D  G  H  G  L  K  D  R  C  V  T  G  A  I  Y  N  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106040" stop="105918"/>
                    <exon start="104757" stop="104577"/>
                    <exon start="104280" stop="104216"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEKMGGFELKWFVGVAVVLMMVQNILGWGKEGHYIICKIAEEYLTEDALAAVKALLPDQAEGDLAAVCSWPDEVRRHYHYRWSSPLHYVDTPDFLCNYKYCRDCHDGHGLKDRCVTGAIYNYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="109274" PGL_stop="113840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109274" e_stop="109631"/>
            <exon e_start="110776" e_stop="110955"/>
            <exon e_start="111163" e_stop="111244"/>
            <exon e_start="111317" e_stop="111424"/>
            <exon e_start="111673" e_stop="111831"/>
            <exon e_start="113246" e_stop="113590"/>
            <exon e_start="113831" e_stop="113840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="0.997"/>
          <exon-intron don_prob="0.904" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.915" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="109274" e_stop="109631" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110776" e_stop="110955" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.943">
            <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111163" e_stop="111244" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.911">
            <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111317" e_stop="111424" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111673" e_stop="111831" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="113246" e_stop="113590" e_length="345"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.915">
            <gDNA_intron_boundary i_start="113591" i_stop="113830" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="0.600">
            <gDNA_exon_boundary e_start="113831" e_stop="113840" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109274" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113590"/>
              <exon start="113831" stop="113840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g21580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAAGAACAAGAATGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG : GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG : ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG : GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG : GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG : CTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCCCCCCTCCAAACATCTGCTGCATGTACACTTTGCAATGTTTCCAATAAAGCAAAACCTTTTTTATGATTTCTCA : AAACTATAGA</gDNA_template>
            <first_frame> F  K  N  K  N  G  N  K  I  Q  E  S  R  V  N  L  S  N  S  L  S  K  T  L  L  T  Q  *  V  K  L  I  V  I  K  D  E  G  C  C  N  H  K  P  W  W  S  R  S  V  E  A  S  R  S  G  R  P  T  N  *  R  *  *  N  L  D  *  D  S  S  Y  C  P  *  *  S  *  Y  P  S  T  P  R  *  I  P  T  P  *  R  R  Q  *  I  P  R  S  *  M  F  W  N  C  *  S  S  R  Q  G  S  Y  S  L  E  N  W  *  S   : G  M  C  S  H  W  W  R  W  L  C  G  E  S  S  C  T  Y  W  T  S  S  S  Y  S  I  R  C  V  F  T  R  C  G  *  L  S  *  S  G  V  H  C  L  V  D  H  F  H  D  E  Q  A  F  L  W  *  N  V  S   : D  T  W  R  L  *  W  N  W  Y  V  C  H  S  N  G  *  V  P  W  S  Q  S  F  H  H  S  R :   K  *  G  K  T  F  R  M  Q  R  T  R  G  *  C  L  H  Q  L  Q  D  *  R  L  C  Y  T  H  Q  G  R  N  R  R  E  R :   C  *  C  H  T  R  *  Y  R  R  F  I  L  P  T  E  P  *  Q  P  Q  C  *  W  *  A  L  H  Y  W  F  Y  G  R  N  S  D  T  S  K  S  W  L  F  V  S  K  T  P  Y  S  A  G :   C  W  L  A  *  *  K  P  K  K  Q  S  S  N  C  E  R  S  G  K  K  C  L  A  C  N  C  S  R  E  G  E  T  G  G  V  Q  V  L  P  L  S  R  S  C  *  G  S  P  V  N  G  K  Q  Q  P  H  W  K  D  S  A  H  C  L  N  V  V  K  E  R  F  S  C  S  *  C  *  N  S  L  Y  L  Q  P  V  P  P  P  P  P  P  P  N  I  C  C  M  Y  T  L  Q  C  F  Q  *  S  K  T  F  F  M  I  S  Q :   N  Y  R </first_frame>
            <second_frame>  S  R  T  R  M  E  T  K  Y  K  K  V  V  *  T  S  P  T  L  F  P  K  P  C  *  L  S  E  *  N  *  L  *  L  R  M  K  A  V  V  I  T  S  P  G  G  P  E  V  L  K  L  Q  E  V  E  D  P  Q  I  K  D  D  E  I  L  I  K  I  A  A  T  A  L  N  R  A  D  T  L  Q  R  Q  G  K  Y  P  P  P  K  G  D  S  E  Y  P  G  L  E  C  S  G  T  V  E  A  V  G  K  E  V  T  R  W  K  I  G  D  Q  :  V  C  A  L  I  G  G  G  G  Y  A  E  K  V  A  V  P  T  G  Q  V  L  P  I  P  S  G  V  S  L  Q  D  A  A  S  F  P  E  V  V  C  T  V  W  S  T  I  F  M  T  S  K  L  S  S  G  E  T  F  L  :  I  H  G  G  S  S  G  I  G  T  F  A  I  Q  M  A  K  C  L  G  V  K  V  F  I  T  A   : G  S  E  E  K  L  S  A  C  K  E  L  G  A  D  V  C  I  N  Y  K  T  E  D  F  V  T  R  I  K  E  E  T  G  G  K   : G  V  D  V  I  L  D  N  I  G  G  S  Y  F  Q  R  N  L  D  S  L  N  V  D  G  R  L  F  I  I  G  F  M  G  G  T  V  T  Q  V  N  L  G  C  L  L  A  R  R  L  T  V  Q   : A  A  G  L  R  S  R  S  P  K  N  K  A  Q  I  V  R  E  V  E  K  N  V  W  P  A  I  A  A  G  K  V  K  P  V  V  Y  K  Y  F  P  L  A  E  A  A  E  A  H  Q  L  M  E  S  S  N  H  I  G  K  I  L  L  T  V  *  M  L  *  K  R  D  F  L  V  L  S  V  K  I  A  C  T  Y  S  Q  S  L  P  P  P  P  L  Q  T  S  A  A  C  T  L  C  N  V  S  N  K  A  K  P  F  L  *  F  L   : K  T  I   </second_frame>
            <third_frame>   Q  E  Q  E  W  K  Q  N  T  R  K  S  C  K  P  L  Q  L  S  F  Q  N  L  V  N  S  V  S  K  I  D  C  D  *  G  *  R  L  L  *  S  Q  A  L  V  V  Q  K  C  *  S  F  K  K  W  K  T  H  K  L  K  M  M  K  S  *  L  R  *  Q  L  L  P  L  I  E  L  I  P  F  N  A  K  V  N  T  H  P  L  K  A  T  V  N  T  Q  V  L  N  V  L  E  L  L  K  Q  S  A  R  K  L  L  A  G  K  L  V  I  R :   Y  V  L  S  L  V  E  V  V  M  R  R  K  *  L  Y  L  L  D  K  F  F  L  F  H  Q  V  C  L  Y  K  M  R  L  A  F  L  K  W  C  A  L  F  G  R  P  F  S  *  R  A  S  F  P  L  V  K  R  F  * :   Y  M  E  A  L  V  E  L  V  R  L  P  F  K  W  L  S  A  L  E  S  K  F  S  S  Q  Q  :  E  V  R  K  N  F  P  H  A  K  N  S  G  L  M  F  A  S  I  T  R  L  K  T  L  L  H  A  S  R  K  K  Q  E  G  K  :  V  L  M  S  Y  *  I  I  *  E  V  H  T  S  N  G  T  L  T  A  S  M  L  M  V  G  S  S  L  L  V  L  W  E  E  Q  *  H  K  *  I  L  A  V  C  *  Q  D  A  L  Q  C  R  :  L  L  A  C  V  V  E  A  Q  K  T  K  L  K  L  *  E  K  W  K  K  M  F  G  L  Q  L  Q  Q  G  R  *  N  R  W  C  T  S  T  S  P  *  Q  K  L  L  R  L  T  S  *  W  K  A  A  T  T  L  E  R  F  C  S  L  F  E  C  C  K  R  E  I  F  L  F  L  V  L  K  *  P  V  L  T  A  S  P  S  P  P  P  P  S  K  H  L  L  H  V  H  F  A  M  F  P  I  K  Q  N  L  F  Y  D  F  S  :  K  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109374" stop="109631"/>
                    <exon start="110776" stop="110955"/>
                    <exon start="111163" stop="111244"/>
                    <exon start="111317" stop="111424"/>
                    <exon start="111673" stop="111831"/>
                    <exon start="113246" stop="113442"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRMKAVVITSPGGPEVLKLQEVEDPQIKDDEILIKIAATALNRADTLQRQGKYPPPKGDSEYPGLECSGTVEAVGKEVTRWKIGDQVCALIGGGGYAEKVAVPTGQVLPIPSGVSLQDAASFPEVVCTVWSTIFMTSKLSSGETFLIHGGSSGIGTFAIQMAKCLGVKVFITAGSEEKLSACKELGADVCINYKTEDFVTRIKEETGGKGVDVILDNIGGSYFQRNLDSLNVDGRLFIIGFMGGTVTQVNLGCLLARRLTVQAAGLRSRSPKNKAQIVREVEKNVWPAIAAGKVKPVVYKYFPLAEAAEAHQLMESSNHIGKILLTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="135082" PGL_stop="134405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135082" e_stop="134405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="135082" e_stop="134405" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135082" stop="134405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g10580" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTCAAGTGTCATGATGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGGAACAAAGTAAAGTTGCTACTTGTGGCTGGGA</gDNA_template>
            <first_frame> V  F  D  S  W  I  *  *  V  H  *  V  L  G  Y  R  N  R  T  S  N  S  N  V  H  D  G  *  D  T  L  C  G  E  A  *  S  *  *  R  *  A  E  C  T  F  G  W  Y  E  *  *  E  D  C  A  V  G  Y  K  Q  W  T  D  Y  T  R  V  R  S  T  S  G  G  S  *  Y  N  Y  L  C  G  *  *  Q  K  V  C  D  L  *  *  *  *  I  T  T  C  L  G  I  W  Y  S  G  C  Y  Q  V  Y  K  *  T  P  Y  A  F  H  A  I  Y  F  A  P  S  K  W  E  L  D  C  S  T  K  F  G  *  P  D  S  Y  L  Q  Y  A  R  E  I  S  A  E  *  K  E  K  I  C  W  T  H  C  R  W  L  C  L  P  G  Q  F  L  T  *  W  T  V  C  L  L  R  R  W  *  R  Q  M  L  V  L  G  L  E  I  V  *  G  L  Q  N  S  Q  V  S  *  W  G  L  Y  W  C  R  V  A  S  S  G  T  K  *  S  C  Y  L  W  L  G </first_frame>
            <second_frame>  F  L  T  A  G  Y  D  K  Y  I  K  Y  W  D  T  E  T  G  Q  V  I  Q  T  F  T  T  G  K  I  P  Y  V  V  R  L  N  P  D  E  D  K  Q  N  V  L  L  A  G  M  S  D  K  K  I  V  Q  W  D  I  N  S  G  Q  I  T  Q  E  Y  D  Q  H  L  G  A  V  N  T  I  T  F  V  D  N  N  R  R  F  V  T  S  S  D  D  K  S  L  R  V  W  E  Y  G  I  P  V  V  I  K  Y  I  S  E  P  H  M  H  S  M  P  S  I  S  P  H  P  N  G  N  W  I  A  A  Q  S  L  D  N  Q  I  L  I  Y  S  T  R  E  R  F  Q  L  N  K  K  K  R  F  A  G  H  I  V  A  G  Y  A  C  Q  V  N  F  S  P  D  G  R  F  V  F  S  G  D  G  E  G  R  C  W  F  W  D  W  K  S  C  K  V  F  R  T  L  K  C  H  D  G  V  C  I  G  A  E  W  H  P  L  E  Q  S  K  V  A  T  C  G  W   </second_frame>
            <third_frame>   F  *  Q  L  D  M  I  S  T  L  S  I  G  I  Q  K  Q  D  K  *  F  K  R  S  R  R  V  R  Y  P  M  W  *  G  L  I  L  M  K  I  S  R  M  Y  F  W  L  V  *  V  I  R  R  L  C  S  G  I  *  T  V  D  R  L  H  K  S  T  I  N  I  W  G  Q  L  I  Q  L  P  L  W  I  I  T  E  G  L  *  P  L  V  M  I  N  H  Y  V  F  G  N  M  V  F  R  L  L  S  S  I  *  V  N  P  I  C  I  P  C  H  L  F  R  P  I  Q  M  G  I  G  L  Q  H  K  V  W  I  T  R  F  L  F  T  V  R  E  R  D  F  S  *  I  K  R  K  D  L  L  D  T  L  S  L  V  M  P  A  R  S  I  S  H  L  M  D  G  L  S  S  Q  E  M  V  K  A  D  A  G  F  G  I  G  N  R  V  R  S  S  E  L  S  S  V  M  M  G  S  V  L  V  Q  S  G  I  L  W  N  K  V  K  L  L  L  V  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135081" stop="134407"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLTAGYDKYIKYWDTETGQVIQTFTTGKIPYVVRLNPDEDKQNVLLAGMSDKKIVQWDINSGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISPHPNGNWIAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVFSGDGEGRCWFWDWKSCKVFRTLKCHDGVCIGAEWHPLEQSKVATCGW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 108 chains have been computed
$ 
$ memory statistics:
$ 11168 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 1861 bytes was the average size of a spliced alignment
$ 11760 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1960 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 109 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:57:18
-->
