<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:05:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616003" ref_strand="+" ref_description="SGN-E616003 [65808]">
      <seq>ctcataccatcaaacacttacttttctcttaatataaaataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagcacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatctcagatcttcagtgaaggtggacttgactacttgggtaacccaancgcttggtcccatnngcacagnacgcatcttggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6971" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="491" g_stop="1" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E616003" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="491" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCATCACCCATCAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>CTCAT-ACCATCAAACACTTACTTTTCTCTTAATATAAAATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGCACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299022" ref_strand="+" ref_description="SGN-E299022 [cLET-42-B14]">
      <seq>acttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="771" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="471" g_stop="1" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E299022" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="471" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>ACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347170" ref_strand="+" ref_description="SGN-E347170 [cTOF-25-E8]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggcccgatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="770" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="470" g_stop="1" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347170" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="470" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCCGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725920" ref_strand="+" ref_description="SGN-E725920 [LA08DA04]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="770" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="470" g_stop="1" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="470" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284551" ref_strand="+" ref_description="SGN-E284551 [cLES-3-L23]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="769" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="469" g_stop="1" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284551" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="469" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335785" ref_strand="+" ref_description="SGN-E335785 [cTOE-6-G1]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="769" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="469" g_stop="1" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E335785" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="469" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268143" ref_strand="+" ref_description="SGN-E268143 [cLEI-15-I8]">
      <seq>taattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcacatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccacatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="768" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="468" g_stop="1" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E268143" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="468" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>TAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCACATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCACATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293416" ref_strand="+" ref_description="SGN-E293416 [cLET-15-B21]">
      <seq>taattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagatcggtgaggctgtgtggttcaaggccggatcccacatcttcagtgaaggtggacttgactacttgggcaacccatgcttggtccatgcacaaagcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="768" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="468" g_stop="1" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293416" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="468" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>TAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGATCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCACATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293417" ref_strand="+" ref_description="SGN-E293417 [cLET-15-B21](-)">
      <seq>agatgctttgtgcatggaccaagcatgggttgcccaagtagtcaagtccaccttcactgaagatgtgggatccggccttgaaccacacagcctcaccgatcttgacaccattacgggccaagagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagttcacggttcttggcaaaagtttcagggtctgctgaaagtccagcggtatcccacccgtaatcaccagggaattcaccggtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcggacttggcaacagcctttctcatagtgatccttccatttccagaaatttctgaggcagatggtgagagtttgactgcctgtccagcaaatgaaggggaagaaagagccattgtagcagctgccatttgtgtttattttaagagaagaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="468" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="498" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E293417" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCAAGTAGTCAAGTCCACCTTCACTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGAAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGAGAAGAATTA</genome_strand>
        <mrna_strand>TGCCCAAGTAGTCAAGTCCACCTTCACTGAAGATGTGGGATCCGGCCTTGAACCACACAGCCTCACCGATCTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGAGAAGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268010" ref_strand="+" ref_description="SGN-E268010 [cLEI-15-I12]">
      <seq>aattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="767" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="467" g_stop="1" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E268010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="467" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>AATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282673" ref_strand="+" ref_description="SGN-E282673 [cLER-15-B17]">
      <seq>tctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccaaatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="761" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="461" g_stop="1" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E282673" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="461" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>TCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAAATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279937" ref_strand="+" ref_description="SGN-E279937 [cLER-8-O12]">
      <seq>ttaaaataaacacaaatggcatctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="757" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="457" g_stop="1" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279937" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="457" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>TTAAAATAAACACAAATGGCATCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220154" ref_strand="+" ref_description="SGN-E220154 [cLEL-12-P24](-)">
      <seq>tgctttgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccttcactaaagatctgggatccggccttgaaccacacagcctcaccgaacttgacaccattacgggccaagagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagttcacggttcttggcaaaagtttcagggtctgctgaaagtccagcggtatcccacccgtaatcaccagggaattcaccggtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcggacttggcaacagcctttctcatagtgatccttccatttccagaaatttctgaggcagatggtgagagtttgactgcctgtccagcaaatgaacgggaagaaagagccattgtagcagctgaaaaatgtgtttatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="456" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="483" r_length="456" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E220154" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCAAGTAGTCAAGTCCACCTTCACTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGAAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTA</genome_strand>
        <mrna_strand>TGCCCAAGTAGTCAAGTCCACCTTCACTAAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAACGGGAAGAAAGAGCCATTGTAGCAGCTGAAAAATGTGTTTATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277388" ref_strand="+" ref_description="SGN-E277388 [cLER-3-K6]">
      <seq>acaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="746" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="446" g_stop="1" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277388" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="446" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>ACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288310" ref_strand="+" ref_description="SGN-E288310 [cLES-16-B14]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgcgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="769" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="469" g_stop="8" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288310" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="469" e_stop="8"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTAC</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGCGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287698" ref_strand="+" ref_description="SGN-E287698 [cLES-9-J19]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagacaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggcgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtgggtcaaggccggatcccagatcttcagtgaaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="769" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="469" g_stop="19" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E287698" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="469" e_stop="19"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTG</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGACAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGCGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGGTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328434" ref_strand="+" ref_description="SGN-E328434 [cTOC-21-B6]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggagctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtacagcgaggctgtgtggttaaggccggatcccagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="769" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="469" g_stop="31" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E328434" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="469" e_stop="31"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCT</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGAGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTACAGCGAGGCTGTGTGGTT-AAGGCCGGATCCCAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282412" ref_strand="+" ref_description="SGN-E282412 [cLER-18-N15]">
      <seq>cttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="758" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="458" g_stop="39" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E282412" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="458" e_stop="39"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATC</genome_strand>
        <mrna_strand>CTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296625" ref_strand="+" ref_description="SGN-E296625 [cLET-39-L18]">
      <seq>taattcttctcttaaaataaacacaaatggcagctgctacaatggctctttctttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="768" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="468" g_stop="49" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E296625" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="468" e_stop="49"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTC-TTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCA</genome_strand>
        <mrna_strand>TAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279431" ref_strand="+" ref_description="SGN-E279431 [cLER-11-D11]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="769" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="469" g_stop="55" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279431" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="469" e_stop="55"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGT</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282597" ref_strand="+" ref_description="SGN-E282597 [cLER-15-E7]">
      <seq>taaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaggccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccggaatggtgtcaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="756" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="456" g_stop="68" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E282597" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="456" e_stop="68"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTC</genome_strand>
        <mrna_strand>TAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGGCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGGAATGGTGTCAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277816" ref_strand="+" ref_description="SGN-E277816 [cLEL-5-A2](-)">
      <seq>cttgacaccattacgggccaagagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagttcacggttcttggcaaaagtttcagggtctgctgaaagtccagcggtatcccacccgtaatcaccagggaattcaccggtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcggacttggcaacagcctttctcatagtgatccttccatttccagaaatttctgaggcagatggtgagagtttgactgcctgtccagcaaatgaaggggaagactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71" g_stop="424" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E277816" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71" e_stop="424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGAAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGA-AAGAGC</genome_strand>
        <mrna_strand>CTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277902" ref_strand="+" ref_description="SGN-E277902 [cLEL-5-L1](-)">
      <seq>gccaagagctcagggaagacacaattccnaaagcaccaaagcatagcccatctgcagtggatcaccctcaagttcacggttcttggcaaaagtttcagggtctgctgaaagtccagcggtatcccacccgtaatcaccagggaattcaccggtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcggacttggcaacagcctttctcatagtgatccttccatttccagaaatttctgaggcagatggtgagagtttgactgcctgtccagcaaatgaaggggaagaaagagccattgtagcagctgccatttgtgtttattttaagagaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87" g_stop="471" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E277902" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87" e_stop="471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGAGCTCAGGGAAGACAC-A-TCCAAGAGCACC-AAGCATAGCCCATCTGCAGTGGATCA-CCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGAAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGAGAAGAATTAAGT</genome_strand>
        <mrna_strand>GCCAAGAGCTCAGGGAAGACACAATTCCNAAAGCACCAAAGCATAGCCCATCTGCAGTGGATCACCCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGAGAAG-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469048" ref_strand="+" ref_description="SGN-E469048 [cSTB-10-C8]">
      <seq>tttcaacatttcataccatcaaacacttacttttctcttaatataaaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccgttctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaatcgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="792" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="498" g_stop="90" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E469048" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="498" e_stop="90"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTCATCTTCATCACCCATCAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTT</genome_strand>
        <mrna_strand>TTTCAACAT-TTCAT-ACC-ATCAAACACTTACTT-TTCTCTTAATATAAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCGTTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAATCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467375" ref_strand="+" ref_description="SGN-E467375 [cSTB-48-H17]">
      <seq>caaacacttacttttctcttaatataaaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccgttctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaatcgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="776" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="476" g_stop="91" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E467375" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="476" e_stop="91"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</genome_strand>
        <mrna_strand>CAAACACTTACTT-TTCTCTTAATATAAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCGTTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAATCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296873" ref_strand="+" ref_description="SGN-E296873 [cLET-26-P16]">
      <seq>gcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="739" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="439" g_stop="93" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E296873" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="439" e_stop="93"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCT</genome_strand>
        <mrna_strand>GCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470810" ref_strand="+" ref_description="SGN-E470810 [cSTB-20-J19]">
      <seq>ttcaaacacttacttttctcttaatataaaatacacacaatggcagctgctacaatggctctttattccccttcttttgctggacaagcattgaaactctcaccatctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcaccaagtctgccccatctagcatcccatggtatggccctgaccatgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctgttgactacggctgggataccgctggactttcatcagaccctgaaacttttgccaataaccgtgaacttgaggtgatccactgtatatgggctatgcttggtgctcttggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4521" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="478" g_stop="107" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E470810" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="478" e_stop="107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACTTAATTCTTCTCTTAA-A-ATAA-ACACA-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGT</genome_strand>
        <mrna_strand>TTCAAACACTTACTT-TTCTCTTAATATAAAATACACACAATGGCAGCTGCTACAATGGCTCTTTATTCCCCTTCTTTTGCTGGACAAGCATTGAAACTCTCACCATCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCACCAAGTCTGCCCCATCTAGCATCCCATGGTATGGCCCTGACCATGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGTTGACTACGGCTGGGATACCGCTGGACTTTCATCAGACCCTGAAACTTTTGCCAATAACCGTGAACTTGAGGTGATCCACTGTATATGGGCTATGCTTGGTGCTCTTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297536" ref_strand="+" ref_description="SGN-E297536 [cLET-28-L12]">
      <seq>gcctgcaggacttaattcttctcttaaaataaacataaatttcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgcgttaagtacttgggcccattctctggtgagtccccaagctactagaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="780" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="480" g_stop="108" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E297536" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="480" e_stop="108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATG</genome_strand>
        <mrna_strand>GCCTGCAGGACTTAATTCTTCTCTTAAAATAAACATAAATTTCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGCGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTAGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279336" ref_strand="+" ref_description="SGN-E279336 [cLEL-4-D24](-)">
      <seq>catagcccatctgcagtggatcacccntcaagtcacggtttttggcaaaagtttcagggtctgctgaaagtccagcggtatcccacccgtaatcaccagggaattcaccggtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcggacttggcaacagcctttctcatagtgatccttccatttccagaaatttctgaggcagatggtgagagtttgactgcctgtccagcaaatgaaggggaagaaagagccattgtagcagctgccatttgtgtttattttaagagaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125" g_stop="471" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E279336" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125" e_stop="471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGCCCATCTGCAGTGGATCA-CC-TCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGAAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGAGAAGAATTAAGT</genome_strand>
        <mrna_strand>CATAGCCCATCTGCAGTGGATCACCCNTCAAG-TCACGGTTTTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGAGAAG-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472405" ref_strand="+" ref_description="SGN-E472405 [cSTB-28-J15]">
      <seq>atttcataccatcaaacacttacttttctcttaatataataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcaaaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggggaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="791" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="491" g_stop="139" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E472405" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="491" e_stop="139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCATCACCCATCAAACACTTAATTCTTCTCTTAAAATAA-ACACA-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACT</genome_strand>
        <mrna_strand>AT-TTCAT-A-CCATCAAACACTTACTT-TTCTCTTAATATAATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAAAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGGGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280889" ref_strand="+" ref_description="SGN-E280889 [cLEL-6-O8](-)">
      <seq>gttcttggcaaaagtttcagggtctggtgaaagtccagcggtatcccacccgtaatcaccagggaattcaccggtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcggacttggcaacagcctttctcatagtgatccttccatttccagaaatttctgaggcagatggtgagagtttgactgccggtccagcaaatgaaggggaagaacccgccattgtagcagctgccatttgtgattattttaagagaagaattaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161" g_stop="477" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E280889" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161" e_stop="477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGAAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGAGAAGAATTAAGTGTTTGA</genome_strand>
        <mrna_strand>GTTCTTGGCAAAAGTTTCAGGGTCTGGTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCGGTCCAGCAAATGAAGGGGAAGAACCCGCCATTGTAGCAGCTGCCATTTGTGATTATTTTAAGAGAAGAATTAAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277725" ref_strand="+" ref_description="SGN-E277725 [cLEL-5-E12](-)">
      <seq>caaaagtttcagggtctgctgaaagtccagcggtatcccacccgtaatcaccagggaattcaccggtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcggacttggcaacagcctttctcatagtgatccttccatttccagaaatttctgaggcagatggtgagagtttgactgcctgtccagcaaatgaaggggaagaaagagccattgtagcagctgccatttgtgtttattttaagactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="169" g_stop="466" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E277725" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="169" e_stop="466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGAAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGAGAAGAAT</genome_strand>
        <mrna_strand>CAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313024" ref_strand="+" ref_description="SGN-E313024 [cTOA-14-E5]">
      <seq>ttctctcaaagtatacacatatggcagctgctacaatggctctttcttccccttcatttgctggacaggctgccaaactctaaccatcagcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgacccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggagagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="762" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="462" g_stop="189" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E313024" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="462" e_stop="189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTC</genome_strand>
        <mrna_strand>TTCTCTCAAAGTATACACATATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCTGCCAAACTCTAACCATCAGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGACCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGAGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290013" ref_strand="+" ref_description="SGN-E290013 [cLET-5-E9]">
      <seq>tcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="709" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="409" g_stop="189" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290013" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="409" e_stop="189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTC</genome_strand>
        <mrna_strand>TCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336300" ref_strand="+" ref_description="SGN-E336300 [cTOE-10-O9]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatgggcctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="769" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="469" g_stop="191" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E336300" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="469" e_stop="191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTT</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGGCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345023" ref_strand="+" ref_description="SGN-E345023 [cTOF-22-N23]">
      <seq>aacacttaattcttctcttaaaataacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="774" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="474" g_stop="220" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345023" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="474" e_stop="220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTG</genome_strand>
        <mrna_strand>AACACTTAATTCTTCTCTTAAAAT-AACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220566" ref_strand="+" ref_description="SGN-E220566 [cLEL-12-P24](-)">
      <seq>cagggaattcaccggtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatgggacggtcttggcaacagcctttctcatagtgatccttccatttccagaaatttctgaggcagatggtgagagtttgactgcctgtccagcaaatgaaggggaagaaagagccattgtagcacctgccatttgtgtttattttaagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="220" g_stop="462" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E220566" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="220" e_stop="462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGAGAA</genome_strand>
        <mrna_strand>CAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGACGGTCTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCACCTGCCATTTGTGTTTATTTTAAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735613" ref_strand="-" ref_description="SGN-E735613 [LC02BC07]">
      <seq>ttttttttttttttttttttttcattggaatagaaaaatccattatattgtcaactcattcacaacaactttacatgaaaatttaaaaatcattttatggtattcactttccgggaacaaagtttgtggcgaaggcccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggaccttttccggtaacaatggcttgaacaaagaatccaaacatagagaacatagcaagtctaccgttcttgatctcctttaccttgagctcagcaaatgcctctgggtcttcagcaaggcctaatgggtcgaagcttccacctgggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtaaccttcaacagctcccatcaacacaacttggcaagcccaaatggccaagatgctttgtgcatgaaccaagcttgggttgcccaagtagtcaagtccaccctcgctgaagatctgggatccggccttgaaccacacagcctcaccaaactttacaccgttgcgggccaagagctcaggaaagacacatccaagagcaccaagcatagcccatctacagtggatcacctcgagttcacggttcttggcaaaggtctcagggtctgctgaaagtccagcagtgtcccatccatagtcaccagggaattcaccggtcaagtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1093" stop="4289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3165" g_stop="3187" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.609"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3310" i_length="123">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3311" g_stop="3989" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="702" r_length="679" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E735613" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735613" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3165" e_stop="3187"/>
          <exon e_start="3311" e_stop="3989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGTGGTTTTTTAATTACCATATCGTTGAAAGTGTTCGTTAGGGCTTTATTCTCTATTCTGTTTCTTTTGTTTTTGGAATGAAAGTTTTATTGTTTGATTCGTATTGTGGGTTTAGAAGATGAAAATTCAGGACTAAAAATCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTC...........................................................................................................................ATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234902" ref_strand="-" ref_description="SGN-E234902 [cLEL-6-F7](-)">
      <seq>ttttttttttttttttttttttcatgggaatagaaaaatccattatattgtcaactcattcacaacaactttacatgaaaatttgaaaatcattttatgatattcactttccgggaacaaagtttgtggcgaaggcccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggaccttttccggtaacaatggcttgaacaaagaatccaaacatagagaacatagcaggtctaccgttcttgatctcctttaccttgagctcagcaaatgcctcggggtcttcagcaaggcctaatgggtcgaagcttccaccgggggagagggggtcgacaacctcaccaagaggtccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1093" stop="3958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3165" g_stop="3187" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.609"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3310" i_length="123">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3311" g_stop="3658" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="371" r_length="348" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E234902" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234902" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3165" e_stop="3187"/>
          <exon e_start="3311" e_stop="3658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGTGGTTTTTTAATTACCATATCGTTGAAAGTGTTCGTTAGGGCTTTATTCTCTATTCTGTTTCTTTTGTTTTTGGAATGAAAGTTTTATTGTTTGATTCGTATTGTGGGTTTAGAAGATGAAAATTCAGGACTAAAAATCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTC...........................................................................................................................ATGGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTGAAAATCATTTTATGATATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAGGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGGAGAGGGGGTCGACAACCTCACCAAGAGGTCCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234806" ref_strand="-" ref_description="SGN-E234806 [cLEL-6-F7](-)">
      <seq>ttttttttttttttttttttttcatgggaatagaaaaatccattatattgtcaactcattcacaacaactttacatgaaaatttgaaaatcattttatgatattcactttccgggaacaaagtttgtggcgaaggcccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggaccttttccggtaacaatggcttgaacaaagaatccaaacatagagaacatagccggtctaccgttcttgatctcctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1093" stop="3858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3165" g_stop="3187" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.609"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3310" i_length="123">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3311" g_stop="3558" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="271" r_length="248" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E234806" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234806" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3165" e_stop="3187"/>
          <exon e_start="3311" e_stop="3558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGTGGTTTTTTAATTACCATATCGTTGAAAGTGTTCGTTAGGGCTTTATTCTCTATTCTGTTTCTTTTGTTTTTGGAATGAAAGTTTTATTGTTTGATTCGTATTGTGGGTTTAGAAGATGAAAATTCAGGACTAAAAATCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTC...........................................................................................................................ATGGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTGAAAATCATTTTATGATATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCCGGTCTACCGTTCTTGATCTCCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225388" ref_strand="-" ref_description="SGN-E225388 [cLEL-17-F20](-)">
      <seq>tttttttttttttttttttcattggaatagaaaaatccattatattgtcaactcattcacaacaactttacatgaaaatttgaaaatcattttatgatattcactttccgggaacaaagtttgtggcgaaggcccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggaccttttccggtaacaatggcttgaacaaagaatccaaacatagagaacatagcaggtctaccgttcttgatctcctttaccttgagctcagcaaatgcctcggggtcttcagcaaggcctaatgggtcgaagcttccaccggggtagagtgggtcgacaacctcaccatgaggtccaccagcaatacggtaaccttcaacagctcccatcaacacaacttggcaagcccaaatggccaagatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1093" stop="4023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3170" g_stop="3187" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.556"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3308" i_length="121">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3309" g_stop="3723" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="433" r_length="415" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E225388" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225388" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3170" e_stop="3187"/>
          <exon e_start="3309" e_stop="3723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGTTTTTTAATTACCATATCGTTGAAAGTGTTCGTTAGGGCTTTATTCTCTATTCTGTTTCTTTTGTTTTTGGAATGAAAGTTTTATTGTTTGATTCGTATTGTGGGTTTAGAAGATGAAAATTCAGGACTAAAAATCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTT.........................................................................................................................TCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTGAAAATCATTTTATGATATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAGGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCGACAACCTCACCATGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219886" ref_strand="-" ref_description="SGN-E219886 [cLEL-24-G2](-)">
      <seq>tttttttttttttttttcattggaatagaaaaatccattatattgtcaactcattcacaacaactttacatgaaaatttgaaaatcattttatgatattcactttccgggaacaaagtttgtggcgaaggcccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggaccttttccggtaacaatggcttgaacaaagaatccaaacatagagaacatagcaggtctaccgttcttgatctcctttaccttgagctcagcaaatgcctcggggtcttcagcaaggcctaatgggtcgaagcttccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtaaccttcaacagctcccatcaacacaacttggcaagcccaaatggccaagatgctttgtgcatgaaccaagcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1093" stop="4044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3172" g_stop="3187" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.562"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3308" i_length="121">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3309" g_stop="3744" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="452" r_length="436" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E219886" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219886" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3172" e_stop="3187"/>
          <exon e_start="3309" e_stop="3744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTTTAATTACCATATCGTTGAAAGTGTTCGTTAGGGCTTTATTCTCTATTCTGTTTCTTTTGTTTTTGGAATGAAAGTTTTATTGTTTGATTCGTATTGTGGGTTTAGAAGATGAAAATTCAGGACTAAAAATCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.........................................................................................................................TCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTGAAAATCATTTTATGATATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAGGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228806" ref_strand="-" ref_description="SGN-E228806 [cLEL-29-M24](-)">
      <seq>tttttttttttttttttcattggaatagaaaaatccattatattgtcaactcattcacaacaactttacatgaaaatttgaaaatcattttatgatattcactttccgggaacaaagtttgtggcgaaggcccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggaccttttccggtaacaatggcttgaacaaagaatccaaacatagagaacatagcaggtctaccgttcttgatctcctttaccttgagctcagcaaatgcctcgggggtcttcagcaaggcctaatggggtcgaagcttccaccggggtagagtggggtcgacaacctcaccaaggaggtccaccagcaatacggtaaccttcaacagctcccatcaacacaacttggcaagcccaaatggccaagatgctttgtgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1093" stop="4032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3172" g_stop="3187" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.562"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3308" i_length="121">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3309" g_stop="3732" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="444" r_length="428" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E228806" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228806" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3172" e_stop="3187"/>
          <exon e_start="3309" e_stop="3732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTTTAATTACCATATCGTTGAAAGTGTTCGTTAGGGCTTTATTCTCTATTCTGTTTCTTTTGTTTTTGGAATGAAAGTTTTATTGTTTGATTCGTATTGTGGGTTTAGAAGATGAAAATTCAGGACTAAAAATCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTC-TGGGTCTTCAGCAAGGCCTAAT-GGGTCGAAGCTTCCACCTGGGTAGAGT-GGGTCGACAACCTCACCAA-GAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.........................................................................................................................TCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTGAAAATCATTTTATGATATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAGGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGGTCTTCAGCAAGGCCTAATGGGGTCGAAGCTTCCACCGGGGTAGAGTGGGGTCGACAACCTCACCAAGGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225326" ref_strand="-" ref_description="SGN-E225326 [cLEL-17-A14](-)">
      <seq>tttttttttttttttttcattggaatagaaaaatccattatattgtcaactcattcacaacaactttacatgaaaatttgaaaatcattttatgatattcactttccgggaacaaagtttgtggcgaaggcccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggaccttttccggtaacaatggcttgaacaaagaatccaaacatagagaacatagcaagtctaccgttcttgatctcctttaccttgagctcagcaaatgccttggggtcttcagcaaggcctaatgggtcgaagcttccaccggggtagagttggggtcgacaacctcaccaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1093" stop="3950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3172" g_stop="3187" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.562"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3308" i_length="121">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3309" g_stop="3650" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="361" r_length="345" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E225326" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225326" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3172" e_stop="3187"/>
          <exon e_start="3309" e_stop="3650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTTTAATTACCATATCGTTGAAAGTGTTCGTTAGGGCTTTATTCTCTATTCTGTTTCTTTTGTTTTTGGAATGAAAGTTTTATTGTTTGATTCGTATTGTGGGTTTAGAAGATGAAAATTCAGGACTAAAAATCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAG-T-GGGTCGACAACCTCACC-AAGAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.........................................................................................................................TCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTGAAAATCATTTTATGATATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTTGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTTGGGGTCGACAACCTCACCAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219838" ref_strand="-" ref_description="SGN-E219838 [cLEL-24-G2](-)">
      <seq>tttttttttttttttttcattggaatagaaaaatccattatattgtcaactcattcacaacaactttacatgaaaatttgaaaatcattttatgatattcactttccgggaacaaagtttgtggcgaaggcccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggaccttttccggtaacaatggcttgaacaaagaatccaaacatagagaacatagcaggtctaccgttcttgatctcctttaccttgagctcagcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="1093" stop="3874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3172" g_stop="3187" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.562"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3308" i_length="121">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3309" g_stop="3574" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="282" r_length="266" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E219838" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219838" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3172" e_stop="3187"/>
          <exon e_start="3309" e_stop="3574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTTTAATTACCATATCGTTGAAAGTGTTCGTTAGGGCTTTATTCTCTATTCTGTTTCTTTTGTTTTTGGAATGAAAGTTTTATTGTTTGATTCGTATTGTGGGTTTAGAAGATGAAAATTCAGGACTAAAAATCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.........................................................................................................................TCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTGAAAATCATTTTATGATATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAGGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203136" ref_strand="+" ref_description="SGN-E203136 [cLEB-3-B6](-)">
      <seq>gcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgatttttagtcctgaattttcatcttctaaacccacaatacgaatcaaacaataaaactttcattccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4049" stop="2923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3749" g_stop="3222" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E203136" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3749" e_stop="3222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGAATTTTCATCTTCTAAACCCACAATACGAATCAAACAATAAAACTTTCATTCCAAAAACAAAAGAAACAGAATAG</genome_strand>
        <mrna_strand>GCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGAATTTTCATCTTCTAAACCCACAATACGAATCAAACAATAAAACTTTCATTCCAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282128" ref_strand="+" ref_description="SGN-E282128 [cLES-4-M21]">
      <seq>tggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcatacccagtaaacaacaacgcctgggccttttccacaaactttgtttccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgaccatataatggatttttctattccaatgatttttagtcctgaattttcattttttaaacccacaatacgaatcaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4066" stop="2959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3766" g_stop="3259" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E282128" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3766" e_stop="3259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGAATTTTCATCTTCTAAACCCACAATACGAATCAAACAA</genome_strand>
        <mrna_strand>TGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCATACCCAGTAAACAACAACGCCTGGGCCTTTTCCACAAACTTTGTTTCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACCATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGAATTTTCATTTTTTAAACCCACAATACGAATCAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733214" ref_strand="+" ref_description="SGN-E733214 [LB04BB06]">
      <seq>cgcattgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaataccataaaatgatttttaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgatttttagtcctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4249" stop="2995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3951" g_stop="3296" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="667"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733214" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3951" e_stop="3296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGA</genome_strand>
        <mrna_strand>CGCATTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230669" ref_strand="+" ref_description="SGN-E230669 [cLEL-35-E13](-)">
      <seq>agcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgatttttagtcctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4023" stop="2995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3723" g_stop="3296" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="444"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E230669" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3723" e_stop="3296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGA</genome_strand>
        <mrna_strand>AGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230599" ref_strand="+" ref_description="SGN-E230599 [cLEL-35-E13](-)">
      <seq>cttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgatttttagtcctgaaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4004" stop="2995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3704" g_stop="3296" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="425"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E230599" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3704" e_stop="3296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGA</genome_strand>
        <mrna_strand>CTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294105" ref_strand="+" ref_description="SGN-E294105 [cLET-13-M10]">
      <seq>tttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggcagacttgctatgttctctatgtatggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttctccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4116" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3816" g_stop="3302" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294105" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3816" e_stop="3302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAG</genome_strand>
        <mrna_strand>TTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTATGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCTCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296844" ref_strand="+" ref_description="SGN-E296844 [cLET-26-B18]">
      <seq>tttttcattggaatagaaaaatccattatattgtcaactcattcacaacaactttacatgaaaatttgaaaatcattttatgatattcactttccgggaacaaagtttgtggcgaaggcccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggaccttttccggtaacaatggcttgaacaaagaatccaaacatagagaacatagcaagtctaccgttcttgatctcctttaccttgagctcagcaaatgcctcggggtcttcagcaaggcctaatgggtcgaagcttccaccggggtagagtgggtcgacaacctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3009" stop="3944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3305" g_stop="3644" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E296844" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3305" e_stop="3644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCAC</genome_strand>
        <mrna_strand>TTTTTCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTGAAAATCATTTTATGATATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCGACAACCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728522" ref_strand="+" ref_description="SGN-E728522 [LA18AD07]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccgggaaaggtccattggagaaccttgctgatcaccttgcaaacccagtaaacaacaacgcctgggccttcgccacaactttgttcccggaaagtgaataccataaatgatttttaaatttcatgtaaagttgttgtgaatgaattgacaatataatggattttcctatccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3309" g_length="933"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="930" r_length="930" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728522" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGA</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGGAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAAACCCAGTAAACAACAACGCCTGGGCCTTCGCCAC-AACTTTGTTCCCGGAAAGTGAATACCAT-AAATGATTTTTAAA-TTTCATGTAAAGTTGTTGTGAATGAATTGACAATATAATGGATTTTCCTATCCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731339" ref_strand="+" ref_description="SGN-E731339 [LA26DD02]">
      <seq>tttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaataccataaaatgatttttaaattttcatgtaaaagtgttgtgaatgagttgacaatataatggatttttctattcccatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4508" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4208" g_stop="3310" g_length="899"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="899" r_length="899" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="900" polyA_stop="909"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731339" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4208" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>TTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAAGTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740494" ref_strand="+" ref_description="SGN-E740494 [LC21CF07]">
      <seq>gctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaataccataaaatgatttttaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgaaaaananaaaaaaaaaaaaaaaaaaaaaannnncccttgggggggggcccgggccccatttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4289" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3989" g_stop="3310" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="711"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E740494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3989" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>GCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285365" ref_strand="+" ref_description="SGN-E285365 [cLER-20-J15]">
      <seq>gagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4071" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3771" g_stop="3310" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="474"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285365" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3771" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>GAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390118" ref_strand="+" ref_description="SGN-E390118 [TUS-17-K1]">
      <seq>cttcgacccattaggccttgctgaagaccccgaggcatttgctgaactcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggaaaaccttgctgatcaccttgcagacccagtaaacaacaacgcctagggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3910" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3610" g_stop="3310" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="303" polyA_stop="312"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E390118" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3610" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCT-GGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAACTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAAAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTAGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390117" ref_strand="+" ref_description="SGN-E390117 [TUS-17-K1](-)">
      <seq>cttcgacccattaggccttgctgaagaccccgaggcatttgatgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctttatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttatattccaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3910" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3610" g_stop="3310" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="311"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E390117" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3610" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGATGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTTTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTATATTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390754" ref_strand="+" ref_description="SGN-E390754 [TUS-47-K1]">
      <seq>cttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3910" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3610" g_stop="3310" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="311"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E390754" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3610" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391266" ref_strand="+" ref_description="SGN-E391266 [TUS-47-K1](-)">
      <seq>cttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3910" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3610" g_stop="3310" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="311"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E391266" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3610" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396280" ref_strand="+" ref_description="SGN-E396280 [TUS-47-K2]">
      <seq>cttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3910" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3610" g_stop="3310" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="311"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E396280" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3610" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278224" ref_strand="+" ref_description="SGN-E278224 [cLER-9-I15]">
      <seq>ttcgactcattaagccttgcttaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3909" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3609" g_stop="3310" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="301" polyA_stop="310"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278224" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3609" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>TTCGACTCATTAAGCCTTGCTTAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289606" ref_strand="-" ref_description="SGN-E289606 [cLET-4-O13]">
      <seq>ccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatccccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattcccatggaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3903" stop="3010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3603" g_stop="3310" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="314"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289606" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289606" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3603" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>CCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCCCCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227978" ref_strand="+" ref_description="SGN-E227978 [cLEL-39-L21](-)">
      <seq>ccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacctgctatgttccctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattcccatggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3895" stop="3010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3595" g_stop="3310" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="288" polyA_stop="313"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E227978" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3595" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATG</genome_strand>
        <mrna_strand>CCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACCTGCTATGTTCCCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731731" ref_strand="+" ref_description="SGN-E731731 [LA28AB03]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaataccataaaatgatttttaaattttcatgtaaagttgttgtgaattgagttgacaatataatggatttttctattccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3772" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3771" i_stop="3722" i_length="50">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.73"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3721" g_stop="3313" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="887" r_length="416" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="888" polyA_stop="898"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731731" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3772"/>
          <exon e_start="3721" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCA-GCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAG------CATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAA-TGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCATGC..................................................ACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATTGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729793" ref_strand="+" ref_description="SGN-E729793 [LA22AE05]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggcccttcgccacaaactttgttccccgaaagtgaataccataaaatgattttttaattttcatgtaaagttgttgtgaatgagttgacaatataatggattttttctatcccaaaaaannaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3313" g_length="929"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="931" r_length="931" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="939" polyA_stop="952"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729793" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>929</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGG-CCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGA-TTTTTCTATTCCA</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCCTTCGCCACAAACTTTGTTCCCCGAAAGTGAATACCATAAAATGATTTTTTAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTTCTATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739206" ref_strand="+" ref_description="SGN-E739206 [LC16CB06]">
      <seq>cacacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttccggaaagtgaataccataaaatgatttttaaattttcatgtaaagttgttgtgaatgaattgacaatataatggatttttctattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3313" g_length="929"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="928" r_length="928" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E739206" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>929</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>CACACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTT-CCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAATTGACAATATAATGGATTTTTCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731574" ref_strand="+" ref_description="SGN-E731574 [LA27CC01]">
      <seq>aaagtttaacatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgccntgggccttcgccacaaactttgtttccggaaagtgaatacccataaatgatttttaaattttcatgtaaaagtgttggtgaatgaatttgacaataataatggatttttctattccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4532" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4232" g_stop="3313" g_length="920"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="924" r_length="924" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="925" polyA_stop="934"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731574" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4232" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCC-TGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTT-GTGAATG-AGTTGACAAT-ATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>AAAGTTTAACATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCNTGGGCCTTCGCCACAAACTTTGTTTCCGGAAAGTGAATACCCATAAATGATTTTTAAATTTTCATGTAAAAGTGTTGGTGAATGAATTTGACAATAATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731655" ref_strand="+" ref_description="SGN-E731655 [LA27DC01]">
      <seq>aaagtttaacatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtanaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttccccgaaaagtgaataccataaaatgatttttaaattttcatggtaagttgttgtgaatgagttgacaatataatggatttttctattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4532" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4232" g_stop="3313" g_length="920"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="921" r_length="921" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731655" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4232" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTT-CCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>AAAGTTTAACATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTANAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCCGAAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGGTAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730738" ref_strand="+" ref_description="SGN-E730738 [LA25AB08]">
      <seq>catctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtcccttggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaacctttgttcccggaaagtgaataccataaaatgatttttaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4358" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4058" g_stop="3313" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="747" polyA_stop="759"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730738" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4058" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>CATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCCTTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAACCTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540100" ref_strand="+" ref_description="SGN-E540100 [TUS-60-D7](-)">
      <seq>agcagcccatggtatggccttgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggattttctattccaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4353" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4053" g_stop="3313" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="741" polyA_stop="758"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E540100" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4053" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>AGCAGCCCATGGTATGGCCTTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGA-TTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339419" ref_strand="+" ref_description="SGN-E339419 [cTOF-4-M12]">
      <seq>tatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4174" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3874" g_stop="3313" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E339419" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3874" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>TATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288370" ref_strand="-" ref_description="SGN-E288370 [cLES-16-K3]">
      <seq>tgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4155" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3855" g_stop="3313" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="544" polyA_stop="567"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288370" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288370" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3855" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>TGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345379" ref_strand="+" ref_description="SGN-E345379 [cTOF-13-G4]">
      <seq>tgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaanaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4144" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3844" g_stop="3313" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345379" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3844" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>TGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733000" ref_strand="+" ref_description="SGN-E733000 [LB03CH01]">
      <seq>cgctgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaataccataaaatgatttttaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattcnaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4132" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3834" g_stop="3313" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="542"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733000" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3834" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>CGCTGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225227" ref_strand="+" ref_description="SGN-E225227 [cLEL-17-A14](-)">
      <seq>ggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattcccaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4089" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3789" g_stop="3313" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="497"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E225227" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3789" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>GGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280374" ref_strand="+" ref_description="SGN-E280374 [cLER-1-M16]">
      <seq>actacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4058" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3758" g_stop="3313" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="461"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280374" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3758" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>ACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227322" ref_strand="+" ref_description="SGN-E227322 [cLEL-30-F5](-)">
      <seq>cccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacctgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatccccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4045" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3745" g_stop="3313" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="467"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E227322" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3745" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>CCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACCTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCCCCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217216" ref_strand="+" ref_description="SGN-E217216 [cLEL-21-G3](-)">
      <seq>cccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4045" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3745" g_stop="3313" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="450"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E217216" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3745" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>CCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222712" ref_strand="+" ref_description="SGN-E222712 [cLEL-16-I11](-)">
      <seq>ggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacctgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataccgcctttttctattccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4036" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3736" g_stop="3313" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="452"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E222712" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3736" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>GGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACCTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATACCGCCTTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225182" ref_strand="+" ref_description="SGN-E225182 [cLEL-17-J1](-)">
      <seq>catgcacaaagcatctggccatttgggctgccaagttgtgttatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccacctctacccggtggaagcttcgacccattaggccttgctgaagaccccaaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4032" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3732" g_stop="3313" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="435"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E225182" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3732" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCA-CTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>CATGCACAAAGCATC-TGGCCATTTGGGC-TGCCAAGTTGTGTT-ATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACCTCTACCC-GGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCAAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221586" ref_strand="+" ref_description="SGN-E221586 [cLEL-10-C17](-)">
      <seq>catgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4032" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3732" g_stop="3313" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="436"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E221586" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3732" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>CATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225619" ref_strand="+" ref_description="SGN-E225619 [cLEL-17-J1](-)">
      <seq>aaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4025" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3725" g_stop="3313" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="431"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E225619" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3725" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>AAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227663" ref_strand="+" ref_description="SGN-E227663 [cLEL-30-B13](-)">
      <seq>aagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacctgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatccccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4024" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3724" g_stop="3313" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="446"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E227663" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3724" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>AAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACCTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCCCCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217494" ref_strand="+" ref_description="SGN-E217494 [cLEL-21-G3](-)">
      <seq>gggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacctgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4007" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3707" g_stop="3313" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="412"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E217494" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3707" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>GGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACCTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225458" ref_strand="+" ref_description="SGN-E225458 [cLEL-17-L17](-)">
      <seq>ttgccaagttgtgttgatggaaactgttaaaggttaccgtattgctggtgaacctcttggtaaggttgtcgacccactctaccccggtgaaagcttcgacccattagaccttgctaaagaccccaaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaataagctcccaatataatggatttttctattccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4003" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3703" g_stop="3313" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="409"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E225458" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3703" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>TTGCCAAGTTGTGTTGATGGAAACTGTTAAAGGTTACCGTATTGCTGGTGAACCTCTTGGTAAGGTTGTCGACCCACTCTACCCCGGTGAAAGCTTCGACCCATTAGACCTTGCTAAAGACCCCAAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATAAGCTCCCAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280593" ref_strand="-" ref_description="SGN-E280593 [cLER-1-F5]">
      <seq>ttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4003" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3703" g_stop="3313" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="409"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280593" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280593" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3703" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>TTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215286" ref_strand="+" ref_description="SGN-E215286 [cLEL-20-E7](-)">
      <seq>aagttgtgttatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccatctctacccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3998" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3698" g_stop="3313" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="401"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E215286" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3698" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCA-CTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>AAGTTGTGTT-ATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCATCTCTACCC-GGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215382" ref_strand="+" ref_description="SGN-E215382 [cLEL-20-E7](-)">
      <seq>agttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3997" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3697" g_stop="3313" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="401"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E215382" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3697" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>AGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227537" ref_strand="+" ref_description="SGN-E227537 [cLEL-30-F5](-)">
      <seq>tgttaaaggttaccgtattgctggtggacctcttggggaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacctgctaagttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccctgctgatccccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaaaatcataaaatgattttccaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3979" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3679" g_stop="3313" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="401"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E227537" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3679" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>TGTTAAAGGTTACCGTATTGCTGGTGGACCTCTTGGGGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACCTGCTAAGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCCTGCTGATCCCCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAAAATCATAAAATGATTTTCCAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222287" ref_strand="+" ref_description="SGN-E222287 [cLEL-16-I11](-)">
      <seq>ggttaccgtattgctggtggacctcttggtgaggttgtcgacccacctctacccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacctgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3972" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3672" g_stop="3313" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="388"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E222287" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3672" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCA-CTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>GGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACCTCTACCC-GGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACCTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227155" ref_strand="+" ref_description="SGN-E227155 [cLEL-30-B13](-)">
      <seq>gtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacctgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatccccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgccaatataatggatttttctattcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3965" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3665" g_stop="3313" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="354" polyA_stop="387"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E227155" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3665" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>GTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACCTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCCCCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGCCAATATAATGGATTTTTCTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225432" ref_strand="+" ref_description="SGN-E225432 [cLEL-17-J13](-)">
      <seq>tggtaaggttgtcgacccactctccaccggtgaaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggatactttgttcaagccattgtaaccggaaaaggtccattggagaaccttactgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaataagttgccaatataatggatttttctattccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3946" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3646" g_stop="3313" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="335" polyA_stop="352"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E225432" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3646" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>TGGTAAGGTTGTCGACCCACTCTCCACCGGTGAAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATACTTTGTTCAAGCCATTGTAACCGGAAAAGGTCCATTGGAGAACCTTACTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATAAGTTGCCAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225833" ref_strand="+" ref_description="SGN-E225833 [cLEL-17-F20](-)">
      <seq>ggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacctgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3940" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3640" g_stop="3313" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="350"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E225833" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3640" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>GGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACCTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390869" ref_strand="+" ref_description="SGN-E390869 [TUS-47-K2](-)">
      <seq>cttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3910" stop="3009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3610" g_stop="3313" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="299" polyA_stop="311"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E390869" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3610" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>CTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284469" ref_strand="+" ref_description="SGN-E284469 [cLER-16-H4]">
      <seq>tgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3871" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3571" g_stop="3313" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="260" polyA_stop="280"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284469" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>259</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3571" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>TGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223570" ref_strand="+" ref_description="SGN-E223570 [cLEL-14-J5](-)">
      <seq>tataccggaaaaggtccattgaagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctattcccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3790" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3492" g_stop="3313" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="181" polyA_stop="198"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E223570" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3492" e_stop="3313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCA</genome_strand>
        <mrna_strand>TATACCGGAAAAGGTCCATTGAAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726945" ref_strand="+" ref_description="SGN-E726945 [LA13BB04]">
      <seq>cgcagcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaataccataaaatgattttttaaatttcatgtaaagttgttgtgaatgagttgacaataatatggatttttctattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4546" stop="3014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4246" g_stop="3314" g_length="933"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="933" r_length="933" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726945" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4246" e_stop="3314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCC</genome_strand>
        <mrna_strand>CGCAGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTTAAATTTCATGTAAAGTTGTTGTGAATGAGTTGACAATAATATGGATTTTTCTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292197" ref_strand="+" ref_description="SGN-E292197 [cLET-1-H13]">
      <seq>gaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4299" stop="3018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3999" g_stop="3318" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E292197" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3999" e_stop="3318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTA</genome_strand>
        <mrna_strand>GAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540104" ref_strand="+" ref_description="SGN-E540104 [TUS-60-D9](-)">
      <seq>tttggtgaggctgtgtggttcaaggcgggatcccagatattcagcgagggtggacttgactatttgggcaacccaagcttggttcaggcacaaagcatcttggccatttgggcttgccaagttgtgtcgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggaagcttcgacccattaggcctaggtgaagaccccgaggcatttgttgagctcaaggtaaaggagatcaagaacggcagactggctatgttctctatgtatggattctttgtccaagccattgttacgggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcgtgggcattcgccacaaaatttgttcccggaaagtgaatatcataaaatgattttcaaattttcatgtaaagttgttgtgaatgagttgacaatataatggatttttctatccaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4116" stop="3012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3816" g_stop="3318" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E540104" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3816" e_stop="3318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTA</genome_strand>
        <mrna_strand>TTTGGTGAGGCTGTGTGGTTCAAGGCGGGATCCCAGATATTCAGCGAGGGTGGACTTGACTATTTGGGCAACCCAAGCTTGGTTCAGGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTCGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGAAGCTTCGACCCATTAGGCCTAGGTGAAGACCCCGAGGCATTTGTTGAGCTCAAGGTAAAGGAGATCAAGAACGGCAGACTGGCTATGTTCTCTATGTATGGATTCTTTGTCCAAGCCATTGTTACGGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCGTGGGCATTCGCCACAAAATTTGTTCCCGGAAAGTGAATATCATAAAATGATTTTCAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726577" ref_strand="+" ref_description="SGN-E726577 [LA12AH10]">
      <seq>caaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccataaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaataccataaaatgattttttaaattttcatggtaaagttgtgtgaatgaactgacaatataatggatttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4520" stop="3019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4220" g_stop="3319" g_length="902"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="902" r_length="902" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726577" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4220" e_stop="3319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGA-TTTTTAAATTTTCAT-GTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCT</genome_strand>
        <mrna_strand>CAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCA-TAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTTAAATTTTCATGGTAAAGTTG-TGTGAATGAACTGACAATATAATGGATTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613342" ref_strand="+" ref_description="SGN-E613342 [63115]">
      <seq>caaggctggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgctcaaagcatcttggccatttgggcttgccaagttgtgttgatgggagccgttgagggataccgtattgcaggtggacctcttggtgaggttgtggacccactataccccggtggaagctttgacccattgggtcttgctgatgacccagaggcatttgctgagctcaaggtaaaggagatcaagaatggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggaccattggagaacctcgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaagatcataaaattatctcaaatttccatgtaaagttgttgtgaatgagttgacaatagactggattttccttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4096" stop="3019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3796" g_stop="3319" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="490"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E613342" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3796" e_stop="3319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCT</genome_strand>
        <mrna_strand>CAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCTCAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGTATTGCAGGTGGACCTCTTGGTGAGGTTGTGGACCCACTATACCCCGGTGGAAGCTTTGACCCATTGGGTCTTGCTGATGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAATGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGACCATTGGAGAACCTCGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAAGATCATAAAATTA-TCTCAAATTTCCATGTAAAGTTGTTGTGAATGAGTTGACAATAGACTGGATTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733321" ref_strand="+" ref_description="SGN-E733321 [LB04CC05]">
      <seq>ccttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaataccataaaatgatttttaaattttcatgtaaagttgttgtgaatgagttgacaatataataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4170" stop="3029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3871" g_stop="3331" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="542" polyA_stop="558"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733321" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3871" e_stop="3331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATA</genome_strand>
        <mrna_strand>CCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734701" ref_strand="+" ref_description="SGN-E734701 [LB13BE01]">
      <seq>cccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcgcggaaagtgaataacataaaatgatttttaaattttcctgtaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4348" stop="3053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4048" g_stop="3353" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734701" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4048" e_stop="3353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTG</genome_strand>
        <mrna_strand>CCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCGCGGAAAGTGAATAACATAAAATGATTTTTAAATTTTCCTGTAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731523" ref_strand="+" ref_description="SGN-E731523 [LA27BF02]">
      <seq>ccgtgagagagtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccggaaagtgaataccataaaatgatttttaaattttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4332" stop="3063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4029" g_stop="3354" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="685" r_length="676" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731523" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4029" e_stop="3354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTT</genome_strand>
        <mrna_strand>AGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727716" ref_strand="+" ref_description="SGN-E727716 [LA15CB06]">
      <seq>aacacttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgaacatataatgaaattttgtttgtgtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4518" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4218" g_stop="3370" g_length="849"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="849" r_length="849" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="925" polyA_stop="936"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727716" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4218" e_stop="3370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAA</genome_strand>
        <mrna_strand>AACACTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACG-TTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733707" ref_strand="+" ref_description="SGN-E733707 [LB10CH10]">
      <seq>cgcttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctgggtcgttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4516" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4216" g_stop="3370" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733707" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4216" e_stop="3370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAA</genome_strand>
        <mrna_strand>CGCTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACG-TTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733709" ref_strand="+" ref_description="SGN-E733709 [LB10CH12]">
      <seq>cgcttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4516" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4216" g_stop="3370" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733709" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4216" e_stop="3370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAA</genome_strand>
        <mrna_strand>CGCTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACG-TTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729994" ref_strand="+" ref_description="SGN-E729994 [LA22CH07]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagacccccgtaaacaacaatgcctgggctttcgccacaaactttgtcccccgaaaatgaatctcttaaaacgttctcaagtctctggccgtttgatgacagtgtaaagatgtatggtgctacctgacaatataatgaaattttggttgggtttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3370" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="923" polyA_stop="938"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729994" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGA-CCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCCGAAAATGAATCTCTTAAAACG-TTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704232" ref_strand="+" ref_description="SGN-E704232 [FA23CH04]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaaatttgtttgtggttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3370" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="846" r_length="846" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="922" polyA_stop="937"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E704232" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACG-TTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731583" ref_strand="+" ref_description="SGN-E731583 [LA27CC10]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacttgacaatataatgaaaatttgtttgtggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3370" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="846" r_length="846" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="920" polyA_stop="935"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731583" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACG-TTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735906" ref_strand="+" ref_description="SGN-E735906 [LC03CE06]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3370" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="846" r_length="846" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="922" polyA_stop="933"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E735906" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACG-TTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732192" ref_strand="+" ref_description="SGN-E732192 [LB01CB01]">
      <seq>cgcatatacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccaataaacaacaacgcctgggccttcgccaacaactttgttcccggaaaagtgataccataaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4520" stop="3077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4222" g_stop="3377" g_length="846"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="846" r_length="846" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732192" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4222" e_stop="3377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGA</genome_strand>
        <mrna_strand>CGCATATACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAATAAACAACAACGCCTGGGCCTTCGCCAACAACTTTGTTCCCGGAAAAGTGATACCATAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726609" ref_strand="+" ref_description="SGN-E726609 [LA12BC08]">
      <seq>gcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaaacaacacgcctgggccttcgccacaaacttttgtcccggaaagtgaagtttttaaaaaattagttgtttgctaattgtaaatttacagaacataataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4542" stop="3090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="3395" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726609" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGT-AAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAAACAAC-ACGCCTGGGCCTTCGCCACAAACTTTTGTCCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717623" ref_strand="+" ref_description="SGN-E717623 [FC02BA10]">
      <seq>gggcgattggcggccaatcggccgaattgatcacccatcaaacacttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4223" g_stop="3395" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="866" r_length="831" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E717623" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4223" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAACACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CATCAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711780" ref_strand="+" ref_description="SGN-E711780 [FB02DH06]">
      <seq>cccattaaatcttctcttaaaataaanacaaatggcagctgctcctatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggacatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4516" stop="3082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4218" g_stop="3395" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E711780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4218" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTACTTTTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CCCATTAAATCTTCTCTTAAAATAAANACAAATGGCAGCTGCTCCTATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGACATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733195" ref_strand="+" ref_description="SGN-E733195 [LB04AH09]">
      <seq>cctttattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctggggctttcgccacaaacttttgtccccggaaatgaatctcttaaaacggtctcaagtctctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4216" g_stop="3395" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="824" r_length="824" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733195" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4216" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTACTTTTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCT-GGGCCTTCGCCACAAAC-TTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CCTTTATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGGCTTTCGCCACAAACTTTTGTCCCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732978" ref_strand="+" ref_description="SGN-E732978 [LB03CF03]">
      <seq>cccttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgcaccaactttgtcccgggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4516" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4216" g_stop="3395" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732978" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4216" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CCCTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCG-CACCAACTTTGTCCCGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736014" ref_strand="+" ref_description="SGN-E736014 [LC04AB04]">
      <seq>cttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtcccccggaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3395" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="821" r_length="821" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E736014" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731753" ref_strand="+" ref_description="SGN-E731753 [LA28AD04]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtcccccgaaaatgaatctcttaaaacgttctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3395" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731753" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732698" ref_strand="+" ref_description="SGN-E732698 [LB02DE11]">
      <seq>cttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctggggcttccccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3395" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="821" r_length="821" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732698" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGGCTTCCCCACAAACTTTGTCCCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734867" ref_strand="+" ref_description="SGN-E734867 [LB13DC03]">
      <seq>cttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtcccccgaaaatgaatctcttaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3395" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="821" r_length="821" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734867" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726606" ref_strand="+" ref_description="SGN-E726606 [LA12BC05]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgtttctcagtctctggtcgtttgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3395" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726606" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729688" ref_strand="+" ref_description="SGN-E729688 [LA21DC01]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3395" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729688" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731663" ref_strand="+" ref_description="SGN-E731663 [LA27DC10]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3395" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731663" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345056" ref_strand="+" ref_description="SGN-E345056 [cTOF-22-L18]">
      <seq>tttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4466" stop="3097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4166" g_stop="3397" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345056" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4166" e_stop="3397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGA</genome_strand>
        <mrna_strand>TTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727428" ref_strand="+" ref_description="SGN-E727428 [LA14CF10]">
      <seq>gcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgccctgggccttcgccacaaactttgttcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4542" stop="3098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="3398" g_length="845"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="846" r_length="846" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727428" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="3398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACG-CCTGGGCCTTCGCCACAAACTTTGTTCCCGG</genome_strand>
        <mrna_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCCTGGGCCTTCGCCACAAACTTTGTTCCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727752" ref_strand="+" ref_description="SGN-E727752 [LA15CE11]">
      <seq>ctaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactttgttcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4534" stop="3099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3399" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="836" r_length="836" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727752" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCG</genome_strand>
        <mrna_strand>CTAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718246" ref_strand="+" ref_description="SGN-E718246 [FC04AE03]">
      <seq>gggcgattggcggccaatcggccgaattgatcacccatcaaacacttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcaaaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcaaaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcaaatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccaaatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4223" g_stop="3400" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="861" r_length="826" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E718246" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4223" e_stop="3400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAACACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCC</genome_strand>
        <mrna_strand>CATCAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAAAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAAACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAAATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAAATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345243" ref_strand="+" ref_description="SGN-E345243 [cTOF-13-K14]">
      <seq>ttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccgggaagggtccattggagaaccttgctgaccaccttgcnagaccccgtaacaacaatgcctgggctttcgccacaaactttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4507" stop="3102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4207" g_stop="3402" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345243" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4207" e_stop="3402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGC-AGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTC</genome_strand>
        <mrna_strand>TTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGGAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCNAGACCCCGT-AACAACAATGCCTGGGCTTTCGCCACAAACTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740766" ref_strand="+" ref_description="SGN-E740766 [LC22DB06]">
      <seq>cgtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctgggccttcgccacaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4529" stop="3107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4230" g_stop="3407" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="824" r_length="824" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E740766" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4230" e_stop="3407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTT</genome_strand>
        <mrna_strand>CGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731617" ref_strand="+" ref_description="SGN-E731617 [LA27CF09]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3419" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731617" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTT</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727268" ref_strand="+" ref_description="SGN-E727268 [LA14AH05]">
      <seq>cttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgccttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4507" stop="3120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4208" g_stop="3420" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727268" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4208" e_stop="3420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCT</genome_strand>
        <mrna_strand>CTTCTCTTAA-ATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGCCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722785" ref_strand="+" ref_description="SGN-E722785 [FC18BC10]">
      <seq>gggcgattggcggccaatcggccgaattgatcacccatcaaacacttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcaaaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcaaaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaaaaacaatgcctgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4223" g_stop="3421" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="840" r_length="805" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E722785" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4223" e_stop="3421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAACACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCC</genome_strand>
        <mrna_strand>CATCAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAAAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAAACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAAAAACAATGCCTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730902" ref_strand="+" ref_description="SGN-E730902 [LA25CC02]">
      <seq>ccattcagttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4520" stop="3131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4221" g_stop="3430" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730902" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4221" e_stop="3430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAAC</genome_strand>
        <mrna_strand>CCATTCAGTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704867" ref_strand="+" ref_description="SGN-E704867 [FA25CA04]">
      <seq>cttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtcgcagcttcgacccattaggccttgctgaacacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggcaagggtccattggagaaccttgctgaccaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3449" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E704867" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGC</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTCGCAGCTTCGACCCATTAGGCCTTGCTGAACACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGCAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341008" ref_strand="+" ref_description="SGN-E341008 [cTOF-5-P3]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggnaaagggtccattggagaaccttgctgaccaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3449" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E341008" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAA-GGTCCATTGGAGAACCTTGCTGATCACCTTGC</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGNAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296627" ref_strand="+" ref_description="SGN-E296627 [cLET-39-N14]">
      <seq>gtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattggagaaccttgctgatcaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4124" stop="3149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3824" g_stop="3449" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E296627" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3824" e_stop="3449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGC</genome_strand>
        <mrna_strand>GTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719935" ref_strand="+" ref_description="SGN-E719935 [FC09BB12]">
      <seq>gggcgattggcggccaatcggccgaattgaactcatcacagcaaccttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcaaaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtaaatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccaaatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccaaaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaaggtccattgaagaaccttgctgatcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4559" stop="3151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4256" g_stop="3451" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="832" r_length="806" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E719935" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4256" e_stop="3451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCATCACAGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTT</genome_strand>
        <mrna_strand>TTGAACTCATCACAGCAACCTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAAAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAAATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAAATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAAAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGAAGAACCTTGCTGATCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613604" ref_strand="+" ref_description="SGN-E613604 [63381]">
      <seq>gtggaagctttgacccattgggtcttgctgatgacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaaccttgcttgatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3917" stop="3154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3617" g_stop="3454" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E613604" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3617" e_stop="3454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGC-TGATCAC</genome_strand>
        <mrna_strand>GTGGAAGCTTTGACCCATTGGGTCTTGCTGATGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTTGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729891" ref_strand="+" ref_description="SGN-E729891 [LA22BF10]">
      <seq>cttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3457" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729891" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGAT</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346897" ref_strand="+" ref_description="SGN-E346897 [cTOF-32-O22]">
      <seq>ctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4478" stop="3158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4178" g_stop="3458" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346897" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4178" e_stop="3458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGA</genome_strand>
        <mrna_strand>CTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346941" ref_strand="+" ref_description="SGN-E346941 [cTOF-32-P21]">
      <seq>ttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggctngccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4507" stop="3159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4207" g_stop="3459" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346941" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4207" e_stop="3459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTG</genome_strand>
        <mrna_strand>TTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTNGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725382" ref_strand="+" ref_description="SGN-E725382 [FC26DG01]">
      <seq>gattggcggccaatcggccgaattgatcacccatcaaacccttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4223" g_stop="3473" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="784" r_length="753" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725382" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4223" e_stop="3473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAACACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATT</genome_strand>
        <mrna_strand>CATCAAACCCTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339068" ref_strand="+" ref_description="SGN-E339068 [cTOF-6-C3]">
      <seq>tgtatggttcaaagctggatctcaaattttcagcgagggcggacttgactacttgggaaaccctagtttggttcatgcacaaagcattttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgatccactttaccctggtggtagctttgacccattgggccttgctgaagacccagaggcttttgctgagctcaaggtgaaggagatcaagaatggtagacttgctatgttctccatgtttggattctttgttcaagctattgtcaccggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4105" stop="3182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3805" g_stop="3482" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E339068" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3805" e_stop="3482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAA</genome_strand>
        <mrna_strand>TGTATGGTTCAAAGCTGGATCTCAAATTTTCAGCGAGGGCGGACTTGACTACTTGGGAAACCCTAGTTTGGTTCATGCACAAAGCATTTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGATCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGAAGACCCAGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464619" ref_strand="+" ref_description="SGN-E464619 [cPRO-18-H5]">
      <seq>catgcttggagctcttggatgtgtcttccctgagcttttggcccgtaacggtgtcaagtttggcgaagctgtatggttcaaggctggatcccaaattttcagcgagggtggactcgactacttgggaaacccaagcttggtccatgcacaaagcatcttggctatttgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgacccactttaccctggtggtagctttgacccattgggccttgctgacgacccagaggcttttgctgagctcaaggttaaggaaatcaagaacggcagacttgctatgttctccatgtttggattctttgtccaagctatcgtcaccggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4173" stop="3183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3874" g_stop="3483" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E464619" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3874" e_stop="3483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAA</genome_strand>
        <mrna_strand>CATGCTTGGAGCTCTTGGATGTGTCTTCCCTGAGCTTTTGGCCCGTAACGGTGTCAAGTTTGGCGAAGCTGTATGGTTCAAGGCTGGATCCCAAATTTTCAGCGAGGGTGGACTCGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGACCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGACGACCCAGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAACGGCAGACTTGCTATGTTCTCCATGTTTGGATTCTTTGTCCAAGCTATCGTCACCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730461" ref_strand="+" ref_description="SGN-E730461 [LA24AG12]">
      <seq>aataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4497" stop="3185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4198" g_stop="3485" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730461" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4198" e_stop="3485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGG</genome_strand>
        <mrna_strand>AATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540103" ref_strand="+" ref_description="SGN-E540103 [TUS-60-D7]">
      <seq>caaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacgggagacttgctatgttctctatgtttggattctttgttcaagccattgttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4534" stop="3187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3487" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E540103" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACC</genome_strand>
        <mrna_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGGAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697405" ref_strand="+" ref_description="SGN-E697405 [FA02DB01]">
      <seq>cttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatccagaacggtaaacttgctatgttctctatgtttggattctttgttcaagctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3492" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E697405" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTG</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCCAGAACGGTAAACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346917" ref_strand="+" ref_description="SGN-E346917 [cTOF-32-H23]">
      <seq>acaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4491" stop="3192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4191" g_stop="3492" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346917" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4191" e_stop="3492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTG</genome_strand>
        <mrna_strand>ACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347576" ref_strand="+" ref_description="SGN-E347576 [cTOF-26-I22]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaagagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3497" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347576" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGC</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAA-GAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615735" ref_strand="+" ref_description="SGN-E615735 [65537]">
      <seq>aagcatcttggctatctgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgacccactttaccctggtggtagctttgacccattgggccttgctgatgacccagaggcttttgctgagctcaaggttaaggaaatcaagaatggcagacttgctatgttctctatgtttggattctttgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4024" stop="3201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3724" g_stop="3501" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E615735" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3724" e_stop="3501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTC</genome_strand>
        <mrna_strand>AAGCATCTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGACCCACTTTACCCTGGTGGTAGCTTTGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724304" ref_strand="+" ref_description="SGN-E724304 [FC23CG12]">
      <seq>cacccatcaaacacttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccaaatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4524" stop="3203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4227" g_stop="3503" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E724304" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4227" e_stop="3503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCATCAAACACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGT</genome_strand>
        <mrna_strand>CACCCATCAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAAATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344489" ref_strand="+" ref_description="SGN-E344489 [cTOF-14-H23]">
      <seq>attcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattangccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4509" stop="3205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4211" g_stop="3505" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E344489" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4211" e_stop="3505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTT</genome_strand>
        <mrna_strand>ATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728219" ref_strand="+" ref_description="SGN-E728219 [LA17AD03]">
      <seq>agcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4543" stop="3208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4243" g_stop="3508" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4243" e_stop="3508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTC</genome_strand>
        <mrna_strand>AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733199" ref_strand="+" ref_description="SGN-E733199 [LB04BA01]">
      <seq>ccgcttagtttaccatcaaacacttacttttctcttgatatccctcaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagtgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4530" stop="3208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4237" g_stop="3508" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733199" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4237" e_stop="3508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTC</genome_strand>
        <mrna_strand>CCGC-TTAGTTTACCATCAAACACTTACTTTTCTCTTGATAT-CCCTCAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728235" ref_strand="+" ref_description="SGN-E728235 [LA17AE10]">
      <seq>gccattttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccagaagcatttgctgagctcnaggtaaaaggagatcaagaacggtagacttgctatgntctctatgtttggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4542" stop="3209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="3509" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728235" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="3509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGT-AAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATT</genome_strand>
        <mrna_strand>GCCATTTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAAGCATTTGCTGAGCTCNAGGTAAAAGGAGATCAAGAACGGTAGACTTGCTATGNTCTCTATGTTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348208" ref_strand="+" ref_description="SGN-E348208 [cTOF-27-E15]">
      <seq>aacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattangccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4494" stop="3210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4194" g_stop="3510" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E348208" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4194" e_stop="3510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGAT</genome_strand>
        <mrna_strand>AACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339981" ref_strand="+" ref_description="SGN-E339981 [cTOF-3-G11]">
      <seq>aacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattangccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4539" stop="3211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4239" g_stop="3511" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E339981" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4239" e_stop="3511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGA</genome_strand>
        <mrna_strand>AACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347048" ref_strand="+" ref_description="SGN-E347048 [cTOF-25-H11]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3520" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347048" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCT</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343775" ref_strand="+" ref_description="SGN-E343775 [cTOF-12-C21]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggaggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaggtaagggagatcaagaaccgtagacttgctatgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3521" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343775" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTC</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGAGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTC-AGGTAAGGGAGATCAAGAACCGTAGACTTGCTATGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338959" ref_strand="+" ref_description="SGN-E338959 [cTOF-6-C15]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaagtaaaaggagatcaagaacggtagacttgctatgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3522" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E338959" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTG-AGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCT</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGTAAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284084" ref_strand="+" ref_description="SGN-E284084 [cLER-13-M10]">
      <seq>tctggtagcccatggtatggtcctgaccgtgttaagtacttgggaccattctctggggaatccccaagctacttgaccggtgagtttcctggtgattacggatgggacactgctggactttcagctgaccctgaaacattcgctaagaaccgtgagttggaggttattcattgtagatgggccatgcttggtgctcttggatgtgtattccccgagcttttggcccgtaatggtgttaagttcggtgaagctgtatggttcaaggctggatcacaaattttcagcgagggtggacttgactacttgggaaacccaagcttggtccatgcacaaagcattttggctatctgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgacccactctaccctggtggtagctttgacccactgggccttgctgatgacccagaggcttttgctgagctcaaggtaaaagagatcaagaatggtagacttgctatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4356" stop="3223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4056" g_stop="3523" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284084" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4056" e_stop="3523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTC</genome_strand>
        <mrna_strand>TCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGGGAATCCCCAAGCTACTTGACCGGTGAGTTTCCTGGTGATTACGGATGGGACACTGCTGGACTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAGTTGGAGGTTATTCATTGTAGATGGGCCATGCTTGGTGCTCTTGGATGTGTATTCCCCGAGCTTTTGGCCCGTAATGGTGTTAAGTTCGGTGAAGCTGTATGGTTCAAGGCTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGACCCACTCTACCCTGGTGGTAGCTTTGACCCACTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGCTCAAGGTAAAAGAGATCAAGAATGGTAGACTTGCTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347864" ref_strand="+" ref_description="SGN-E347864 [cTOF-31-G19]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3526" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347864" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATG</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332724" ref_strand="+" ref_description="SGN-E332724 [cTOD-18-A22]">
      <seq>aaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaagttgtcgacccactctaccccggtggaagcttcgacccattangccttgctgaagaccccgagcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4540" stop="3227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4240" g_stop="3527" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E332724" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4240" e_stop="3527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTAT</genome_strand>
        <mrna_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGA-GCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729061" ref_strand="+" ref_description="SGN-E729061 [LA19DD09]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttcccctcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3537" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729061" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCC-TCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731148" ref_strand="+" ref_description="SGN-E731148 [LA26BB08]">
      <seq>cttaattcttctcataaagtaaacgcaaaaggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4181" g_stop="3552" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="665" r_length="630" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731148" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4181" e_stop="3552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGG</genome_strand>
        <mrna_strand>CTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373769" ref_strand="+" ref_description="SGN-E373769 [TUS-31-G18]">
      <seq>taaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4501" stop="3254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4201" g_stop="3554" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E373769" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4201" e_stop="3554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAA</genome_strand>
        <mrna_strand>TAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731223" ref_strand="+" ref_description="SGN-E731223 [LA26CA08]">
      <seq>cttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3555" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731223" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373541" ref_strand="+" ref_description="SGN-E373541 [TUS-31-L22]">
      <seq>taattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4512" stop="3256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3556" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E373541" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTTTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTA</genome_strand>
        <mrna_strand>TAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340849" ref_strand="+" ref_description="SGN-E340849 [cTOF-5-D6]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgcccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaaggttgtcgacccactcntaccccgtggaagcttcgacccattangccttgctgaagaccccgaggcatttgctgagctcaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3559" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340849" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTG-CCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTG-AGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAG</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGGTTGTCGACCCACTCNTACCCCGTGGAAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343541" ref_strand="+" ref_description="SGN-E343541 [cTOF-19-B17]">
      <seq>acttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagaccccagagcatttgctgagctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4515" stop="3259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4215" g_stop="3559" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343541" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4215" e_stop="3559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAG</genome_strand>
        <mrna_strand>ACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCAGAGCATTTGCTGAGCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346990" ref_strand="+" ref_description="SGN-E346990 [cTOF-25-O5]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgngcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaagggtaccgtattgctggtggacctcttggtgagggttgtcgacccactctaccccggtgggagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3560" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346990" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGG-TTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAA</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGNGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGGTACCGTATTGCTGGTGGACCTCTTGGTGAGGGTTGTCGACCCACTCTACCCCGGTGGGAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343994" ref_strand="+" ref_description="SGN-E343994 [cTOF-12-I24]">
      <seq>ttctcttaaaataaaacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctacccctgtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4507" stop="3260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4207" g_stop="3560" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343994" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4207" e_stop="3560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAA</genome_strand>
        <mrna_strand>TTCTCTTAAAATAAAACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCTGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728308" ref_strand="+" ref_description="SGN-E728308 [LA17BF01]">
      <seq>gtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctanccaggtggaagcttcgacccattaggccttgctgaagacccaaagcatttgctgagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4529" stop="3261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4229" g_stop="3561" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728308" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4229" e_stop="3561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCA</genome_strand>
        <mrna_strand>GTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTANCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCA-AAGCATTTGCTGAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341885" ref_strand="+" ref_description="SGN-E341885 [cTOF-9-N16]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaaaggtgtcgacccactctaccctggtggcagcttcgacccattangccttgctgaagacccagaggcatttgctgagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3561" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E341885" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTG-AGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAAAGGTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342872" ref_strand="+" ref_description="SGN-E342872 [cTOF-7-P4]">
      <seq>tcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaacctctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggtttgtcgacccactctacccctggtggcagcttcgacccattangccttgctgaagacccagaggcatttgctgagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4509" stop="3261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4209" g_stop="3561" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342872" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4209" e_stop="3561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAA-CTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGG-TTGTCGACCCACTCTA-CCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCA</genome_strand>
        <mrna_strand>TCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACCTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTTGTCGACCCACTCTACCCCTGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347747" ref_strand="+" ref_description="SGN-E347747 [cTOF-26-I10]">
      <seq>cttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctgntggcagcttcgacccattaggccttgctgaagacccagaggcattgctgagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4503" stop="3261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4203" g_stop="3561" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347747" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4203" e_stop="3561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCA</genome_strand>
        <mrna_strand>CTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGNTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCA-TTGCTGAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280116" ref_strand="+" ref_description="SGN-E280116 [cLEL-7-A15](-)">
      <seq>tgagttcagcaaatgcctcagggtcttcagcaaggcctaatgggtcgaagcttccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtaaccttcaacagctcccatcaacacaacttggcaagcccaaatggccaagatgctttgtgcatgaaccaagcttgggttgcccaagtagtcaagtccaccctcgctgaagatctgggatccggccttgaaccacacagcctcaccaaactttacaccgttgcgggccaagaggtcaggaaagacacatccaagagccccaagcatagcccatctgcagtggatcacctcgagttcacctcgtgccgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3261" stop="4205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3561" g_stop="3906" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E280116" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3561" e_stop="3906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACG</genome_strand>
        <mrna_strand>TGAGTTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGGTCAGGAAAGACACATCCAAGAGCCCCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342854" ref_strand="+" ref_description="SGN-E342854 [cTOF-7-H22]">
      <seq>agcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccccgtggaagcttcgacccattangccttgctgaagacccccgagcatttgctgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4543" stop="3281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4243" g_stop="3562" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342854" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4243" e_stop="3562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTC</genome_strand>
        <mrna_strand>AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCCGTGGAAGCTTCGACCCATTANGCCTTGCTGAAGACCCCCGAGCATTTGCTGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343063" ref_strand="+" ref_description="SGN-E343063 [cTOF-11-O10]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccccgtggaagcttcgacccattangccttgctgaaagaccccgagcatttgctgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3562" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343063" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTG-AAGACCCAGAGGCATTTGCTGAGCTC</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCCGTGGAAGCTTCGACCCATTANGCCTTGCTGAAAGACCCCGA-GCATTTGCTGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478762" ref_strand="+" ref_description="SGN-E478762 [cSTD-6-N4]">
      <seq>cttcaacaatatttcaattttcataccatcaaacaattactttgttctcttgatataagcaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatctctatgagaaaggccgtcgccaagtctacctcatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtccccaagttacttgaccggtgaattccctggtgactacgggtgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaggctgtgtggttcaaggctggatcccaaatcttcagcgagggtggacttgattacttaggaaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgatgatccagaggcatttgctgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4209" g_stop="3562" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="690" r_length="648" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E478762" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4209" e_stop="3562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTC</genome_strand>
        <mrna_strand>TGTTCTCTTGATATAAGCACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCTCTATGAGAAAGGCCGTCGCCAAGTCTACCTCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAAATCTTCAGCGAGGGTGGACTTGATTACTTAGGAAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGATGATCCAGAGGCATTTGCTGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567112" ref_strand="-" ref_description="SGN-E567112 [11186]">
      <seq>agctcagcaatgcctctggtcatcagcaagacccaatggtcaaagcttccaccggggtatagtgggtccacaacctcaccaagaggtccacctgcaatacggtatccctcaacggctcccatcaacacaacttggcaagcccaaatggccaagatgctttgagcatggaccaagcttgggttgcccaagtagtcaagtccaccctcgctgaagatctgggatccagccttgaaccacacagcctcaccaaacttgacaccgttgcgggccaagagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagctcacggttcttggcaaaggtttctggatctgctgaaagtccagcggtgtcccacccatagtcaccagggaactcaccggtcaagtagcttggggactcaccagagaatggacccaagtacttaacacggtctggaccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagatggtgaaagtttgactgcctgtccagcaaaagaaggggaagaaagagccattgtagcagctgccattgtgtttataaaagtaagtgtttgatggtatgaaaattgttgaagtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3263" stop="99742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3563" g_stop="4197" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4198" i_stop="6646" i_length="2449">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6647" g_stop="6688" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="673" r_length="41" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E567112" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3563" e_stop="4197"/>
          <exon e_start="6647" e_stop="6688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCTGTGATGAGTTGAAGTTACAAGGGAATTATTCAGCATATATAGGGATTAAGAGGGAAAGAGTCCTTATCTAGTGATATCTATATTTATGATCTCATTGGGTATCAAGATCCCATATACAGCAAGTAATGCTACTTGGCAATCTCTAGTCCAACAATTTTACAGGATGTTTACAGTGGGGACCCAACTAATGTTGTCCACCTTTAATTGGCTACAAGGCTTGAACTCTATTCTGTGATTTGTTGAACTTACAATATGATATCTCTTATCATTATCCATTGAAAATTTCTCCAGATTTTATCTAACAGCGCTATATGTCACTTAATGTAGGGTAAGGTCTGCCTAACACGTTACCCTCGCCAGACCTTAGTTATGAGATTATACTCGTTATATTGTTACTGGTGTTTATCACAACTTGTAATTACTTAAAAAGGAAAGACTAATCAAGATTTGAACTTTATGAGTTCTAGAATCTAGGACAATGACCTCAAGTATTAGTAAATTCTGTATACATATTTAATGAATATGTTAACACATATACATGGTTTAAGCCAAAGCTATTTGGTTCTGTCAAACTGATATGCTGAAGGCTACCTCTGCGAGCCACTGTAATAAGTGATATGATTGTGCAAGTATTTTTGACAATGTCAATACATAGAACTTAATTTTCTTTTCCATAGTGTCATGAATATCTTCTGCTTACTATGTGTCCTTTTGGCTGTAAATTCTGATCAAAATGTACCATGTTTGGAAGGATATCTGCCTCTGTTATATAAGCTGTCACACAGATGCTTTTACTCTAAAGACATATGTAAGGAAGGAAGATTATACAAGAAGTTTATGATTTTGTTCAAGTTAAAGATGCTAATTAAATTAACGACATATCAGTCTATTAATGATCTGGAAACTCGTCAATATCACTCACTCCGTTTTATTTTGTTTGTCTAATTTTGACTTGTTACGGAATTTAAGAAAGTAAAGAATATTTTTGAATCTTATGATCTTAAAACAAAGATATGTATAATGTACCAAAACGTTATTTAATCTTGTGGTCTTAAACATGTTAAGTGAAAAGTTGAAGCAAGGTATTGTAAAAAATGAAAGTAAGACGGATTAAATTGAAACAGAGAGAGTACTTGCTGATTCTGAAGACAAAACATATACATTAGTTTTCCCTTATCATTGAAATGTCACTGCGTACGTAGTAGTGAAATAAACGTATGTCCTCTTAATTCATCTCACTTCTCAACTTAAAAATAAAGGAATCATCATGCTACTGTCGGCACTAAGTTAAGAGTATTGCTTCTTGAGAACTGAATCATTCCATAAGTTCCTCTACTGGTCTCTATATTCAACTTTTAAGCTTTTACCACATACCAAATGTATAATTTTTTTTGAACAGTCACCTGTTTTTCCCCTTTGATATGAAACTTGCAGCATCTCATTCATGCCATTGGAAAATGAAATTCAAGACTATACCATAACAGGAATAAGATGTAAGAAAAATCAATTCTATTGTTCAAGTTAACTCACAAATTACAACTTTACATGGTCAACAAATGATCAGAAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAGGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCTACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGATCCAGCCTTGAACCAGACAGCCTCACCAAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCTGGATCTGCTGAAAGTCCAGCGGTGTCCCACCCGTAGTCACCAGGGAATTCACCATTCAAGTAGCTAGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTTGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCTGTGATTTCTGAGGCAGATGGTAAGAGTTTCACTGCTTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGGTATGAGATATTGTTGAAGTTGGC</genome_strand>
        <mrna_strand>AGCTCAGC-AATGCCTCT-GGTCATCAGCAAGACCCAAT-GGTCAAAGCTTCCACCGGGGTATAGTGGGTCCACAACCTCACCAAGAGGTCCACCTGCAATACGGTATCCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGAGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCAAACTTGACACCGTTGCGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGCTCACGGTTCTTGGCAAAGGTTTCTGGATCTGCTGAAAGTCCAGCGGTGTCCCACCCATAGTCACCAGGGAACTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCTGGACCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGATGGTGAAAGTTTGACTGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTAAGTGTTTGATGGTATGA-AAATTGTTGAAGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319976" ref_strand="+" ref_description="SGN-E319976 [cTOB-31-A9]">
      <seq>cttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccccgangcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4537" stop="3263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4237" g_stop="3563" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E319976" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4237" e_stop="3563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>CTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGANGCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328313" ref_strand="+" ref_description="SGN-E328313 [cTOC-21-C3]">
      <seq>tcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctctttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattangccttgctgaaagacccgaggcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4535" stop="3263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4235" g_stop="3563" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E328313" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4235" e_stop="3563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTC-TTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>TCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTANGCCTTGCTGAAAGACCCGAGGCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343193" ref_strand="+" ref_description="SGN-E343193 [cTOF-17-N9]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattangccttgctgaagaccccgaggcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3563" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343193" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347738" ref_strand="-" ref_description="SGN-E347738 [cTOF-26-E10]">
      <seq>agctcagcaaatgcctcggggtcttcagcaaggcntaatgggtcgaagcttccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtaaccttcaacagctcccatcaacacaacttggcaagcccaagtagtcaagtccaccctcgctgaagatctgggatccggccttgaaccacacagcctcaccaaactttacaccgttgcgggccaagagctcaggaaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcgagttcacggttcttggcaaaggtctcagggtctgctgaaagtccagcagtgtcccatccatagtcaccagggaattcaccggtcaagtaacttggggattcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagagggtgagagtttcaccgcctgtccagcaaaagaaggggaagaaagagccattgtagcagctgccattgtgtttatatcaagagaaaagtaagtgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3263" stop="4521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3563" g_stop="3704" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3705" i_stop="3754" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.73"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3755" g_stop="4221" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="615" r_length="473" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E347738" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347738" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3563" e_stop="3704"/>
          <exon e_start="3755" e_stop="4221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAG------TAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGA</genome_strand>
        <mrna_strand>AGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCNTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAG..................................................CCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAACTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343011" ref_strand="+" ref_description="SGN-E343011 [cTOF-11-G9]">
      <seq>aacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccccgtggaagcttcgacccattangccttgctgaagaccccgaggcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4518" stop="3263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4218" g_stop="3563" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343011" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4218" e_stop="3563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>AACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCCGTGGAAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348510" ref_strand="+" ref_description="SGN-E348510 [cTOF-30-F11]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaangttgtgttgatgggaagctgttgagggataccgtattgctggtggacctcttggtgaaggttgtcgacccactctanccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3563" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E348510" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAA-GTTGTGTTGATGGG-AGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGA-GGTTGTCGACCCACTCTA-CCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAANGTTGTGTTGATGGGAAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAAGGTTGTCGACCCACTCTANCCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340219" ref_strand="+" ref_description="SGN-E340219 [cTOF-2-F5]">
      <seq>tttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttggagcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaaggntgtcgacccactctaccccggtggaagcttcgacccattangccttgctgaagaccccgaggcatttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4528" stop="3266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4228" g_stop="3566" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340219" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4228" e_stop="3566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGG-GCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTG-AGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGA</genome_strand>
        <mrna_strand>TTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGAGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGGNTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGAGGCATTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348942" ref_strand="+" ref_description="SGN-E348942 [cTOF-29-G22]">
      <seq>acttaattcttctcttaaaataaaacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggctttgccaagttgtgttgatgggagctgttgagggataccgtatngctggtggacctcttggtgaggnntgtcgacccactctacccctggtggcagcttcgacccattangccttgctgaagacccagaggcatttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4515" stop="3266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4215" g_stop="3566" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E348942" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4215" e_stop="3566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACTT-TTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGC-TTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGG-TTGTCGACCCACTCTA-CCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGA</genome_strand>
        <mrna_strand>ACTTAATTCTTCTCTTAAAATAAAACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATNGCTGGTGGACCTCTTGGTGAGGNNTGTCGACCCACTCTACCCCTGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCAGAGGCATTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731152" ref_strand="+" ref_description="SGN-E731152 [LA26BC02]">
      <seq>cttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctancctggtggcagcttcgacccattangccttgctgaagacccagaagcatttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3566" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731152" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTANCCTGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCAGAAGCATTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460420" ref_strand="+" ref_description="SGN-E460420 [cPRO-31-A20]">
      <seq>caattttcataccatcaaacaattactttgttctcttgatataagcaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatctctatgagaaaggccgtcgccaagtctacctcatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagttacttgaccggtgaattccctggtgactacgggtgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaggctgtgtggttcaaggctggatcccaaatcttcagcgagggtggacttgattacttaggaaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattangccttgctgatgatccagaagcatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3567" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E460420" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGT-TTACCATCAAACACTTACTT--TTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTG</genome_strand>
        <mrna_strand>CAATTTTCATACCATCAAACAATTACTTTGTTCTCTTGATATAAGCACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCTCTATGAGAAAGGCCGTCGCCAAGTCTACCTCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAAATCTTCAGCGAGGGTGGACTTGATTACTTAGGAAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTANGCCTTGCTGATGATCCAGAAGCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315701" ref_strand="+" ref_description="SGN-E315701 [cTOA-26-G1]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttgggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagaccagnagcatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3567" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E315701" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTT-GGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTG</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGA-CCAGNAGCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390688" ref_strand="+" ref_description="SGN-E390688 [TUS-46-H20]">
      <seq>tcaaacacttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcacaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccattctaccctggtgggctcttcgaaccattaggccttgctgaagaacccgaaggcatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4521" stop="3268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4221" g_stop="3568" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E390688" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4221" e_stop="3568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACTTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAG-ACCCAGAGGCATTTGCT</genome_strand>
        <mrna_strand>TCAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCACAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCATTCTACCCTGGTGGGCTCTTCGAACCATTAGGCCTTGCTGAAGAACCCGAAGGCATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729345" ref_strand="+" ref_description="SGN-E729345 [LA20DB04]">
      <seq>agctaacttcaaaagtttaccancaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaagccttgctgaagaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4543" stop="3281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4243" g_stop="3581" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729345" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4243" e_stop="3581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCC</genome_strand>
        <mrna_strand>AGCTAACTTCAAAAGTTTACCANCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAAGCCTTGCTGAAGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572646" ref_strand="+" ref_description="SGN-E572646 [31832]">
      <seq>caacatttcataccatcaaacacttacttttttcttaatataaaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaatcgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggccggatctcagatcttcagtgaaggtggacttgattacttgggtaatccaagcttggtccatgcacagagcatcttggncatctgggcttgccaagttgtgttgatgggagccgttgagggataccgtattgccggtggacctcttggtgaggtcgtcgaaccactctaccctggtggaagctttgacccattaggtcttgctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3584" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E572646" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTT--TACCATCAAACACTTACTTTTCTCTTGATAT-AAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGA</genome_strand>
        <mrna_strand>CAACATTTCATACCATCAAACACTTACTTTTTTCTTAATATAAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAATCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCTCAGATCTTCAGTGAAGGTGGACTTGATTACTTGGGTAATCCAAGCTTGGTCCATGCACAGAGCATCTTGGNCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGTATTGCCGGTGGACCTCTTGGTGAGGTCGTCGAACCACTCTACCCTGGTGGAAGCTTTGACCCATTAGGTCTTGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347461" ref_strand="+" ref_description="SGN-E347461 [cTOF-33-L11]">
      <seq>agcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4543" stop="3287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4243" g_stop="3587" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347461" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4243" e_stop="3587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGA</genome_strand>
        <mrna_strand>AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728006" ref_strand="+" ref_description="SGN-E728006 [LA16BF07]">
      <seq>gaggaacacttaattcttctcttaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4518" stop="3287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4222" g_stop="3587" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728006" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4222" e_stop="3587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGA</genome_strand>
        <mrna_strand>GAGGAACACTTAATTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284941" ref_strand="+" ref_description="SGN-E284941 [cLER-19-N10]">
      <seq>tttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4452" stop="3287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4152" g_stop="3587" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284941" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4152" e_stop="3587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGA</genome_strand>
        <mrna_strand>TTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331910" ref_strand="+" ref_description="SGN-E331910 [cTOD-16-E9]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcaaaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcaaatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaagccttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3589" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E331910" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCT</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAAAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAAATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAAGCCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729309" ref_strand="+" ref_description="SGN-E729309 [LA20CF09]">
      <seq>gcaaacttcaaaagtttaccancaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaagtggaagcttcgacccattaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4542" stop="3295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="3595" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729309" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="3595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGC</genome_strand>
        <mrna_strand>GCAAACTTCAAAAGTTTACCANCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAAGTGGAAGCTTCGACCCATTAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291842" ref_strand="+" ref_description="SGN-E291842 [cLET-7-M16]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgtcaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggagctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3609" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E291842" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCT</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGAGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321131" ref_strand="+" ref_description="SGN-E321131 [cTOB-13-K16]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3616" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E321131" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGT</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462926" ref_strand="+" ref_description="SGN-E462926 [cPRO-13-I11]">
      <seq>caacaatatttcaattttcataccatcaaacaattactttgttctcttgatataagcaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatctctatgagaaaggccgtcgccaagtctacctcatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagttacttgaccggtgaattccctggtgactacgggtgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaggctgtgtggttcaaggctggatcccaaatcttcagcgagggtggacttgattacttaggaaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4209" g_stop="3619" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="630" r_length="591" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E462926" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4209" e_stop="3619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCA</genome_strand>
        <mrna_strand>TGTTCTCTTGATATAAGCACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCTCTATGAGAAAGGCCGTCGCCAAGTCTACCTCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAAATCTTCAGCGAGGGTGGACTTGATTACTTAGGAAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294123" ref_strand="+" ref_description="SGN-E294123 [cLET-13-F11]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3620" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294123" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCC</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460312" ref_strand="+" ref_description="SGN-E460312 [cPRO-30-L13]">
      <seq>ataccatcaaacacttacttttctcttaatataaaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccgttctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaatcgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggccggatctcagatcttcagtgaaggtggacttgattacttgggtaacccaagcttggtccatgcacagagtatcttggccatctgggcttgccaagttgtgttgatgggagccgttgaaggataccgtattgccggtggacctcttggtgaggtcgtcgacccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4227" g_stop="3626" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E460312" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4227" e_stop="3626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCATCAAACACTTACTTTTCTCTTGATAT-AAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACT</genome_strand>
        <mrna_strand>ATACCATCAAACACTTACTTTTCTCTTAATATAAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCGTTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAATCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCTCAGATCTTCAGTGAAGGTGGACTTGATTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGTATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAAGGATACCGTATTGCCGGTGGACCTCTTGGTGAGGTCGTCGACCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347491" ref_strand="+" ref_description="SGN-E347491 [cTOF-33-H8]">
      <seq>acacttaattcttctcttaaaaaaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4517" stop="3333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4217" g_stop="3633" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347491" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4217" e_stop="3633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTACTT-TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCG</genome_strand>
        <mrna_strand>ACACTTAATTCTTCTCTTAAAA-AAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280419" ref_strand="+" ref_description="SGN-E280419 [cLER-1-B20]">
      <seq>gagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctcttggtgaggttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4384" stop="3335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4084" g_stop="3635" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280419" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4084" e_stop="3635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGT</genome_strand>
        <mrna_strand>GAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730172" ref_strand="+" ref_description="SGN-E730172 [LA23BB09]">
      <seq>gctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggatctgttgaaggttaccgtattgctggtggacctcttggtgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4479" stop="3338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4179" g_stop="3638" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730172" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4179" e_stop="3638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGT</genome_strand>
        <mrna_strand>GCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGATCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322850" ref_strand="+" ref_description="SGN-E322850 [cTOB-30-P17]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgaaggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaagttaccgtattgctggtggacctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3645" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E322850" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTG</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAAGTTACCGTATTGCTGGTGGACCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726336" ref_strand="+" ref_description="SGN-E726336 [LA11CB05]">
      <seq>cggcaaacttctcaagtttaccatcatacacttacttttctcttgatataaacactatggcagctgctactgatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatctctatgagaaaggctgttgccaagtctgccccatctagcaacccatggtatggccctgaccgtgttaagtacttgggccccttctctggtgaatccccaagctacttgaccggtgaattccctggagactatggatgggacactgctggactttcagcaaaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttgatgctcttggatgtgtctttcctgaactcttggcccgctacggcgtaaagattggtgaggctgtgtggttcaaggccggatcccagatcttcagcaagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggacatttgggcttgcctagttgtgttgatgggagctgttgaaggttaccgtattgctggtggacctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4544" stop="3346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4244" g_stop="3646" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726336" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4244" e_stop="3646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTAC-AATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTT</genome_strand>
        <mrna_strand>CGGCAAACTTCTCAAGTTTACCATCATACACTTACTTTTCTCTTGATATAAACACTATGGCAGCTGCTACTGATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCTCTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAACCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCCTTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGAGACTATGGATGGGACACTGCTGGACTTTCAGCAAACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGATGCTCTTGGATGTGTCTTTCCTGAACTCTTGGCCCGCTACGGCGTAAAGATTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCAAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGACATTTGGGCTTGCCTAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291044" ref_strand="+" ref_description="SGN-E291044 [cLET-8-E3]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3647" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E291044" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCT</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465157" ref_strand="+" ref_description="SGN-E465157 [cPRO-20-C10]">
      <seq>ccaagaccaagcctgcctcctctggtagcccatggtatggtcctgaccgtgttaagtacttgggcccattctctggtgaagcaccaagctacttgactggtgagtttcctggtgactatggatgggacactgctggactttcagctgaccctgaaacattcgctaagaaccgtgaattggaggtgatccactgcagatgggccatgcttggagctcttggatgtgtcttccctgagcttttggcccgtaacggtgtcaagtttggcgaagctgtatggttcaaggctggatcccaaattttcagcgagggtggactcgactacttgggaaacccaagcttggtccatgcacaaagcatcttggctatttgggcttgccaagttgtgttgatgggagccgttgaaggttaccgtattgctggtgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4370" stop="3351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4076" g_stop="3651" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E465157" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4076" e_stop="3651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGAC</genome_strand>
        <mrna_strand>CCAAGACCAAGCCTGCCTCCTCTGGTAGCCCATGGTATGGTCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAAGCACCAAGCTACTTGACTGGTGAGTTTCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCTGACCCTGAAACATTCGCTAAGAACCGTGAATTGGAGGTGATCCACTGCAGATGGGCCATGCTTGGAGCTCTTGGATGTGTCTTCCCTGAGCTTTTGGCCCGTAACGGTGTCAAGTTTGGCGAAGCTGTATGGTTCAAGGCTGGATCCCAAATTTTCAGCGAGGGTGGACTCGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCTATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347707" ref_strand="+" ref_description="SGN-E347707 [cTOF-26-I21]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4514" stop="3355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3655" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347707" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGT</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329487" ref_strand="+" ref_description="SGN-E329487 [cTOD-11-J9]">
      <seq>ttaattcttcttttaaaataaactcaaatggcagctgctggaatggctctttgttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3655" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E329487" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGT</genome_strand>
        <mrna_strand>TTAATTCTTCTTTTAAAATAAACTCAAATGGCAGCTGCTGGAATGGCTCTTTGTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466504" ref_strand="+" ref_description="SGN-E466504 [cPRO-24-N13]">
      <seq>caattttcataccatcaaacaattactttgttctcttgatataagcaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatctctatgagaaaggccgtcgccaagtctacctcatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagttacttgaccggtgaattccctggtgactacgggtgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaggctgtgtggttcaaggctggatcccaaatcttcagcgagggtggacttgattacttangaaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3657" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E466504" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGT-TTACCATCAAACACTTACTT--TTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTG</genome_strand>
        <mrna_strand>CAATTTTCATACCATCAAACAATTACTTTGTTCTCTTGATATAAGCACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCTCTATGAGAAAGGCCGTCGCCAAGTCTACCTCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAAATCTTCAGCGAGGGTGGACTTGATTACTTANGAAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293910" ref_strand="+" ref_description="SGN-E293910 [cLET-13-C20]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttgaaggttaccgtattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3657" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293910" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTG</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725518" ref_strand="+" ref_description="SGN-E725518 [LA03DE12]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttgagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgnngcaccccagcttggtccatgcacaaagcatcttggccatcntggcttgccaagnntgtgtgatgggagctgttgagggataccgtattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14136" stop="3357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3657" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725518" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTT-TTCTCTTGATATAAACACA-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAG-TTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTG</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTGAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGNNGCACCCCAGCTTGGTCCATGCACAAAGCATCTTGGCCATCNTGGCTTGCCAAGNNTGTG-TGATGGGAGCTGTTGAGGGATACCGTATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322416" ref_strand="+" ref_description="SGN-E322416 [cTOB-24-N20]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgttggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgaaggataccgtattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3657" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E322416" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTG</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGTTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGATACCGTATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478371" ref_strand="+" ref_description="SGN-E478371 [cSTD-4-K12]">
      <seq>catcaaacacttacttttctcttaatataaaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccgttctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaatcgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggcccgatctcagatcttcagtgaaggtggacttgattacttgggtaacccaagcttggtccatgcacagagtatcttggccatctgggcttgccaagttgtgttgatgggagccgttgaaggataccgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4523" stop="3361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4223" g_stop="3661" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E478371" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4223" e_stop="3661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAACACTTACTTTTCTCTTGATAT-AAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATT</genome_strand>
        <mrna_strand>CATCAAACACTTACTTTTCTCTTAATATAAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCGTTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAATCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCCGATCTCAGATCTTCAGTGAAGGTGGACTTGATTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGTATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAAGGATACCGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468417" ref_strand="-" ref_description="SGN-E468417 [cSTB-3-J15]">
      <seq>tacggtatccctcaacggctcccatcaacacaacttggcaagcccaaatggccaagatgctttgagcatggaccaagcttgggttgcccaagtagtcaagtccaccctcgctgaagatctgggatccagccttgaaccacacagcctcaccaaacttgacaccgttgcgggccaagagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagctcacggttcttggcaaaggtttctggatctgctgaaagtccagcggtgtcccacccatagtcaccagggaactcaccggtcaagtagcttggggactcaccagagaatggacccaagtacttaacacggtctggaccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagatggtgaaagtttgactgcctgtccagcaaaagaaggggaagaaagagccattgtagcagctgccattgtgtttataaaagtaagtgtttgatggtatgaaaattgttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3363" stop="6983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3663" g_stop="4197" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4198" i_stop="6646" i_length="2449">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6647" g_stop="6683" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="571" r_length="36" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E468417" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468417" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3663" e_stop="4197"/>
          <exon e_start="6647" e_stop="6683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCTGTGATGAGTTGAAGTTACAAGGGAATTATTCAGCATATATAGGGATTAAGAGGGAAAGAGTCCTTATCTAGTGATATCTATATTTATGATCTCATTGGGTATCAAGATCCCATATACAGCAAGTAATGCTACTTGGCAATCTCTAGTCCAACAATTTTACAGGATGTTTACAGTGGGGACCCAACTAATGTTGTCCACCTTTAATTGGCTACAAGGCTTGAACTCTATTCTGTGATTTGTTGAACTTACAATATGATATCTCTTATCATTATCCATTGAAAATTTCTCCAGATTTTATCTAACAGCGCTATATGTCACTTAATGTAGGGTAAGGTCTGCCTAACACGTTACCCTCGCCAGACCTTAGTTATGAGATTATACTCGTTATATTGTTACTGGTGTTTATCACAACTTGTAATTACTTAAAAAGGAAAGACTAATCAAGATTTGAACTTTATGAGTTCTAGAATCTAGGACAATGACCTCAAGTATTAGTAAATTCTGTATACATATTTAATGAATATGTTAACACATATACATGGTTTAAGCCAAAGCTATTTGGTTCTGTCAAACTGATATGCTGAAGGCTACCTCTGCGAGCCACTGTAATAAGTGATATGATTGTGCAAGTATTTTTGACAATGTCAATACATAGAACTTAATTTTCTTTTCCATAGTGTCATGAATATCTTCTGCTTACTATGTGTCCTTTTGGCTGTAAATTCTGATCAAAATGTACCATGTTTGGAAGGATATCTGCCTCTGTTATATAAGCTGTCACACAGATGCTTTTACTCTAAAGACATATGTAAGGAAGGAAGATTATACAAGAAGTTTATGATTTTGTTCAAGTTAAAGATGCTAATTAAATTAACGACATATCAGTCTATTAATGATCTGGAAACTCGTCAATATCACTCACTCCGTTTTATTTTGTTTGTCTAATTTTGACTTGTTACGGAATTTAAGAAAGTAAAGAATATTTTTGAATCTTATGATCTTAAAACAAAGATATGTATAATGTACCAAAACGTTATTTAATCTTGTGGTCTTAAACATGTTAAGTGAAAAGTTGAAGCAAGGTATTGTAAAAAATGAAAGTAAGACGGATTAAATTGAAACAGAGAGAGTACTTGCTGATTCTGAAGACAAAACATATACATTAGTTTTCCCTTATCATTGAAATGTCACTGCGTACGTAGTAGTGAAATAAACGTATGTCCTCTTAATTCATCTCACTTCTCAACTTAAAAATAAAGGAATCATCATGCTACTGTCGGCACTAAGTTAAGAGTATTGCTTCTTGAGAACTGAATCATTCCATAAGTTCCTCTACTGGTCTCTATATTCAACTTTTAAGCTTTTACCACATACCAAATGTATAATTTTTTTTGAACAGTCACCTGTTTTTCCCCTTTGATATGAAACTTGCAGCATCTCATTCATGCCATTGGAAAATGAAATTCAAGACTATACCATAACAGGAATAAGATGTAAGAAAAATCAATTCTATTGTTCAAGTTAACTCACAAATTACAACTTTACATGGTCAACAAATGATCAGAAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAGGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCTACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGATCCAGCCTTGAACCAGACAGCCTCACCAAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCTGGATCTGCTGAAAGTCCAGCGGTGTCCCACCCGTAGTCACCAGGGAATTCACCATTCAAGTAGCTAGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTTGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCTGTGATTTCTGAGGCAGATGGTAAGAGTTTCACTGCTTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGGTATGAGATATTGTTGAAG</genome_strand>
        <mrna_strand>TACGGTATCCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGAGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCAAACTTGACACCGTTGCGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGCTCACGGTTCTTGGCAAAGGTTTCTGGATCTGCTGAAAGTCCAGCGGTGTCCCACCCATAGTCACCAGGGAACTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCTGGACCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGATGGTGAAAGTTTGACTGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTAAGTGTTTGATGGTATGA-AAATTGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292433" ref_strand="+" ref_description="SGN-E292433 [cLET-1-F14]">
      <seq>taattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4512" stop="3366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3666" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E292433" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTTTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACC</genome_strand>
        <mrna_strand>TAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203135" ref_strand="+" ref_description="SGN-E203135 [cLEB-3-B6]">
      <seq>gcacgagcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4546" stop="3375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4247" g_stop="3675" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E203135" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4247" e_stop="3675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAC-AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTG</genome_strand>
        <mrna_strand>GCACGAGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283364" ref_strand="+" ref_description="SGN-E283364 [cLER-12-M19]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3675" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283364" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTG</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331829" ref_strand="+" ref_description="SGN-E331829 [cTOD-7-O6]">
      <seq>tttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4528" stop="3375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4228" g_stop="3675" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E331829" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4228" e_stop="3675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTG</genome_strand>
        <mrna_strand>TTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324364" ref_strand="+" ref_description="SGN-E324364 [cTOC-6-O13]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3676" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E324364" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTT</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284211" ref_strand="+" ref_description="SGN-E284211 [cLER-16-C20]">
      <seq>taattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccaaatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4512" stop="3376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3676" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284211" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTTTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTT</genome_strand>
        <mrna_strand>TAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAAATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460357" ref_strand="+" ref_description="SGN-E460357 [cPRO-30-F6]">
      <seq>atttcataccatcaaacacttacttttctcttaatataataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatctcagatcttcagtgaaggtggacttgactacttgggcaaaccaagctggntccatgcacagagcatcttggccatttgggcttgccaagttgtgttaatgggagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4232" g_stop="3677" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E460357" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4232" e_stop="3677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTACCATCAAACACTTACTTTTCTCTTGATA---TAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGT</genome_strand>
        <mrna_strand>ATTTCATACCATCAAACACTTACTTTTCTCTTAATATAATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAAACCAAGCTGGNTCCATGCACAGAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTAATGGGAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298452" ref_strand="+" ref_description="SGN-E298452 [cLET-41-G3]">
      <seq>cttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4537" stop="3378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4237" g_stop="3678" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E298452" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4237" e_stop="3678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTG</genome_strand>
        <mrna_strand>CTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297473" ref_strand="+" ref_description="SGN-E297473 [cLET-28-A17]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataggcacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaaacatcttggccatttgggcttgccaagttgtgttgatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3679" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E297473" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAGGCACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAACATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324756" ref_strand="+" ref_description="SGN-E324756 [cTOC-8-C11]">
      <seq>aaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4540" stop="3379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4240" g_stop="3679" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E324756" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4240" e_stop="3679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</genome_strand>
        <mrna_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292441" ref_strand="+" ref_description="SGN-E292441 [cLET-1-J10]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaagtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3679" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E292441" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAAGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346098" ref_strand="+" ref_description="SGN-E346098 [cTOF-34-C5]">
      <seq>ccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4524" stop="3379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4224" g_stop="3679" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346098" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4224" e_stop="3679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</genome_strand>
        <mrna_strand>CCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331461" ref_strand="+" ref_description="SGN-E331461 [cTOD-9-P6]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3679" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E331461" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340415" ref_strand="+" ref_description="SGN-E340415 [cTOF-1-C17]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3679" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340415" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAA-TGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288715" ref_strand="+" ref_description="SGN-E288715 [cLES-8-J3]">
      <seq>acaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4491" stop="3379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4191" g_stop="3679" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288715" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4191" e_stop="3679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</genome_strand>
        <mrna_strand>ACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283319" ref_strand="+" ref_description="SGN-E283319 [cLER-12-F8]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3680" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283319" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGC</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279472" ref_strand="+" ref_description="SGN-E279472 [cLER-5-C21]">
      <seq>caaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4534" stop="3381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3681" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279472" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAG</genome_strand>
        <mrna_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283469" ref_strand="+" ref_description="SGN-E283469 [cLER-12-D16]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3681" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283469" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAG</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277326" ref_strand="+" ref_description="SGN-E277326 [cLER-3-A3]">
      <seq>ttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4527" stop="3381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4227" g_stop="3681" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277326" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4227" e_stop="3681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAG</genome_strand>
        <mrna_strand>TTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477453" ref_strand="+" ref_description="SGN-E477453 [cSTB-48-C2]">
      <seq>caaacttcaacaatttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtcaaactttcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggtccagaccgtgttaagtacttgggtccattctctggtgagtccccaagctacttgacaggtgaattccctggtgactatgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgcaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgctcaaagcatcttggccatttgggcttgccaagttgtgttgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3682" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E477453" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGA</genome_strand>
        <mrna_strand>CAAACTTCAACAATTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTCAAACTTTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGTCCAGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCAAGCTACTTGACAGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGCAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCTCAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343101" ref_strand="+" ref_description="SGN-E343101 [cTOF-11-N4]">
      <seq>ccatcaaacacttactttcctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcacaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggagactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgctcggtgctcttggatgtgtctttcctgagctcttggcccgcaacggcgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4524" stop="3382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4224" g_stop="3682" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343101" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4224" e_stop="3682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGA</genome_strand>
        <mrna_strand>CCATCAAACACTTACTTTCCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCACAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGAGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTCGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGCGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348730" ref_strand="+" ref_description="SGN-E348730 [cTOF-29-E9]">
      <seq>ttaattcttctcttaaaataacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4513" stop="3383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="3683" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E348730" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="3683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTT-TTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGG</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342331" ref_strand="+" ref_description="SGN-E342331 [cTOF-8-H13]">
      <seq>ttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4507" stop="3384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4207" g_stop="3684" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342331" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4207" e_stop="3684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTGATATAAACAC-AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGG</genome_strand>
        <mrna_strand>TTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298544" ref_strand="+" ref_description="SGN-E298544 [cLET-41-H23]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3685" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E298544" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATG</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472688" ref_strand="-" ref_description="SGN-E472688 [cSTB-29-H9]">
      <seq>atcaacacaacttggcaagcccaaatggccaagatgctttgagcatggaccaagcttgggttgcccaagtagtcaagtccaccctcgttgaagatctgggatccagccttgaaccacacagcctcaccaaacttgacaccgttgcgggccaagagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagctcacggttcttggcaaaggtttctggatctgctgaaagtccagcggtgtcccacccatagtcaccagggaactcaccggtcaagtagcttggggactcaccagagaatggacccaagtacttaacacggtctggaccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagatggtgaaagtttgactgcctgtccagcaaaagaaggggaagaaagagccattgtagcagctgccattgtgtttataaaagtaagtgtttgatggtatgaaaattgttgaagtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3386" stop="99742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3686" g_stop="4197" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4198" i_stop="6646" i_length="2449">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6647" g_stop="6688" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="553" r_length="41" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E472688" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472688" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3686" e_stop="4197"/>
          <exon e_start="6647" e_stop="6688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCTGTGATGAGTTGAAGTTACAAGGGAATTATTCAGCATATATAGGGATTAAGAGGGAAAGAGTCCTTATCTAGTGATATCTATATTTATGATCTCATTGGGTATCAAGATCCCATATACAGCAAGTAATGCTACTTGGCAATCTCTAGTCCAACAATTTTACAGGATGTTTACAGTGGGGACCCAACTAATGTTGTCCACCTTTAATTGGCTACAAGGCTTGAACTCTATTCTGTGATTTGTTGAACTTACAATATGATATCTCTTATCATTATCCATTGAAAATTTCTCCAGATTTTATCTAACAGCGCTATATGTCACTTAATGTAGGGTAAGGTCTGCCTAACACGTTACCCTCGCCAGACCTTAGTTATGAGATTATACTCGTTATATTGTTACTGGTGTTTATCACAACTTGTAATTACTTAAAAAGGAAAGACTAATCAAGATTTGAACTTTATGAGTTCTAGAATCTAGGACAATGACCTCAAGTATTAGTAAATTCTGTATACATATTTAATGAATATGTTAACACATATACATGGTTTAAGCCAAAGCTATTTGGTTCTGTCAAACTGATATGCTGAAGGCTACCTCTGCGAGCCACTGTAATAAGTGATATGATTGTGCAAGTATTTTTGACAATGTCAATACATAGAACTTAATTTTCTTTTCCATAGTGTCATGAATATCTTCTGCTTACTATGTGTCCTTTTGGCTGTAAATTCTGATCAAAATGTACCATGTTTGGAAGGATATCTGCCTCTGTTATATAAGCTGTCACACAGATGCTTTTACTCTAAAGACATATGTAAGGAAGGAAGATTATACAAGAAGTTTATGATTTTGTTCAAGTTAAAGATGCTAATTAAATTAACGACATATCAGTCTATTAATGATCTGGAAACTCGTCAATATCACTCACTCCGTTTTATTTTGTTTGTCTAATTTTGACTTGTTACGGAATTTAAGAAAGTAAAGAATATTTTTGAATCTTATGATCTTAAAACAAAGATATGTATAATGTACCAAAACGTTATTTAATCTTGTGGTCTTAAACATGTTAAGTGAAAAGTTGAAGCAAGGTATTGTAAAAAATGAAAGTAAGACGGATTAAATTGAAACAGAGAGAGTACTTGCTGATTCTGAAGACAAAACATATACATTAGTTTTCCCTTATCATTGAAATGTCACTGCGTACGTAGTAGTGAAATAAACGTATGTCCTCTTAATTCATCTCACTTCTCAACTTAAAAATAAAGGAATCATCATGCTACTGTCGGCACTAAGTTAAGAGTATTGCTTCTTGAGAACTGAATCATTCCATAAGTTCCTCTACTGGTCTCTATATTCAACTTTTAAGCTTTTACCACATACCAAATGTATAATTTTTTTTGAACAGTCACCTGTTTTTCCCCTTTGATATGAAACTTGCAGCATCTCATTCATGCCATTGGAAAATGAAATTCAAGACTATACCATAACAGGAATAAGATGTAAGAAAAATCAATTCTATTGTTCAAGTTAACTCACAAATTACAACTTTACATGGTCAACAAATGATCAGAAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAGGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCTACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGATCCAGCCTTGAACCAGACAGCCTCACCAAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCTGGATCTGCTGAAAGTCCAGCGGTGTCCCACCCGTAGTCACCAGGGAATTCACCATTCAAGTAGCTAGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTTGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCTGTGATTTCTGAGGCAGATGGTAAGAGTTTCACTGCTTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGGTATGAGATATTGTTGAAGTTGGC</genome_strand>
        <mrna_strand>ATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGAGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGTTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCAAACTTGACACCGTTGCGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGCTCACGGTTCTTGGCAAAGGTTTCTGGATCTGCTGAAAGTCCAGCGGTGTCCCACCCATAGTCACCAGGGAACTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCTGGACCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGATGGTGAAAGTTTGACTGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTAAGTGTTTGATGGTATGA-AAATTGTTGAAGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290723" ref_strand="+" ref_description="SGN-E290723 [cLET-10-M16]">
      <seq>agtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgccaagttgtgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4530" stop="3386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4230" g_stop="3686" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290723" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4230" e_stop="3686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGAT</genome_strand>
        <mrna_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726374" ref_strand="+" ref_description="SGN-E726374 [LA11CE09]">
      <seq>cggctaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgaaaaaggctgttgccaagactgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttgatgaggctgtgtggctcaaggccggatccaagatctacagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcatggccctttgggcttgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4544" stop="3397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4244" g_stop="3697" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726374" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4244" e_stop="3697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAA</genome_strand>
        <mrna_strand>CGGCTAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAAAAAGGCTGTTGCCAAGACTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGATGAGGCTGTGTGGCTCAAGGCCGGATCCAAGATCTACAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCATGGCCCTTTGGGCTTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298424" ref_strand="+" ref_description="SGN-E298424 [cLET-41-N22]">
      <seq>aaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggcgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4540" stop="3400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4240" g_stop="3700" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E298424" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4240" e_stop="3700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGC</genome_strand>
        <mrna_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGCGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323030" ref_strand="+" ref_description="SGN-E323030 [cTOB-30-P16]">
      <seq>agtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaagccggatcccaaatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaaacatcttggccatttgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4530" stop="3402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4230" g_stop="3702" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E323030" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4230" e_stop="3702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTT</genome_strand>
        <mrna_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAAGCCGGATCCCAAATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAACATCTTGGCCATTTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295972" ref_strand="+" ref_description="SGN-E295972 [cLET-27-M17]">
      <seq>aaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggagaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4540" stop="3404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4240" g_stop="3704" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295972" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4240" e_stop="3704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGC</genome_strand>
        <mrna_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGAGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299339" ref_strand="+" ref_description="SGN-E299339 [cLET-43-L8]">
      <seq>caaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4534" stop="3404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3704" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E299339" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGC</genome_strand>
        <mrna_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293422" ref_strand="+" ref_description="SGN-E293422 [cLET-15-D5]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3704" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293422" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGC</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293423" ref_strand="+" ref_description="SGN-E293423 [cLET-15-D5](-)">
      <seq>gcccaaatggccaagatgctttgtgcatgaaccaagcttgggttgcccaagtagtcaagtccaccctcgctgaagatctgggatccggccttgaaccacacagcctcaccaaactttacaccgttgcgggccaagagctcaggaaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcgagttcacggttcttggcaaaggtctcagggtctgctgaaagtccagcagtgtcccatccatagtcaccagggaattcaccggtcaagtaacttggggattcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagagggtgagagtttcaccgcctgtccagcaaaagaaggggaagaaagagccattgtagcagctgccattgtgtttatatcaagagaaaagtaagtgtttgatggtaaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3404" stop="4533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3704" g_stop="4233" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E293423" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3704" e_stop="4233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTT</genome_strand>
        <mrna_strand>GCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAACTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725970" ref_strand="+" ref_description="SGN-E725970 [LA08DF01]">
      <seq>caaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4520" stop="3404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4220" g_stop="3704" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4220" e_stop="3704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGC</genome_strand>
        <mrna_strand>CAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725885" ref_strand="+" ref_description="SGN-E725885 [LA08CE09]">
      <seq>gcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttgcttcatgcacaaagcatcttggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4542" stop="3411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="3711" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725885" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="3711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCA</genome_strand>
        <mrna_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGCTTCATGCACAAAGCATCTTGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725773" ref_strand="+" ref_description="SGN-E725773 [LA05CF01]">
      <seq>aaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaaccaagcttggttcatgcacaaagcatcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4532" stop="3414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4232" g_stop="3714" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725773" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4232" e_stop="3714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGG</genome_strand>
        <mrna_strand>AAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAA-CCAAGCTTGGTTCATGCACAAAGCATCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293620" ref_strand="+" ref_description="SGN-E293620 [cLET-15-J2]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3715" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293620" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTG</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296834" ref_strand="+" ref_description="SGN-E296834 [cLET-26-N21]">
      <seq>tcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4535" stop="3416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4235" g_stop="3716" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E296834" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4235" e_stop="3716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTT</genome_strand>
        <mrna_strand>TCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283465" ref_strand="+" ref_description="SGN-E283465 [cLER-12-B18]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3716" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283465" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTT</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293908" ref_strand="+" ref_description="SGN-E293908 [cLET-13-C6]">
      <seq>tcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgaaaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4535" stop="3417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4235" g_stop="3717" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293908" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4235" e_stop="3717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCT</genome_strand>
        <mrna_strand>TCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAAAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468580" ref_strand="+" ref_description="SGN-E468580 [cSTB-5-A24]">
      <seq>caacaatttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtcaaactttcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgccgccaagtctgccccatctagcagcccatggtatggtccataccgtgttaagtacttgggtccattctatggtgagtccccaagctacttgacaggtgaattccctggtgactatgggtgggacaccgctggactttcagcagatccacaaacctttgccaagaaccgcgaactcgaggtgatccactgcatatgggctatgcttggtgctcttggatgcgtcttccctgagctcttggcccgcaacggtgtcaagtttggtgaggctgcgtggttcaaggctggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttgatccatgctcaaagcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4534" stop="3417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3717" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E468580" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCT</genome_strand>
        <mrna_strand>CAACAATTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTCAAACTTTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGCCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGTCCATACCGTGTTAAGTACTTGGGTCCATTCTATGGTGAGTCCCCAAGCTACTTGACAGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCAGATCCACAAACCTTTGCCAAGAACCGCGAACTCGAGGTGATCCACTGCATATGGGCTATGCTTGGTGCTCTTGGATGCGTCTTCCCTGAGCTCTTGGCCCGCAACGGTGTCAAGTTTGGTGAGGCTGCGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGATCCATGCTCAAAGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474860" ref_strand="+" ref_description="SGN-E474860 [cSTB-38-O9]">
      <seq>caacaatttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtcaaactttcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggtccagaccgtgttaagtacttgggtccattctctggtgagtccccaagctacttgacaggtgaattccctggtgactatgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgcaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgctcaaagcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4534" stop="3417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3717" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E474860" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCT</genome_strand>
        <mrna_strand>CAACAATTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTCAAACTTTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGTCCAGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCAAGCTACTTGACAGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGCAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCTCAAAGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294994" ref_strand="+" ref_description="SGN-E294994 [cLET-17-J20]">
      <seq>agtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4530" stop="3417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4230" g_stop="3717" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294994" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4230" e_stop="3717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCT</genome_strand>
        <mrna_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294647" ref_strand="+" ref_description="SGN-E294647 [cLET-22-M18]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3718" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294647" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATC</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282514" ref_strand="+" ref_description="SGN-E282514 [cLER-18-M20]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3726" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E282514" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCAC</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297299" ref_strand="+" ref_description="SGN-E297299 [cLET-29-O6]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaaccgtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3729" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E297299" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATG</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACCGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295187" ref_strand="+" ref_description="SGN-E295187 [cLET-20-N9]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3729" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295187" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATG</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278674" ref_strand="+" ref_description="SGN-E278674 [cLER-10-D16]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3737" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278674" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTT</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283684" ref_strand="+" ref_description="SGN-E283684 [cLES-1-N16]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3737" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283684" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTT</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298525" ref_strand="+" ref_description="SGN-E298525 [cLET-41-O22]">
      <seq>cttcaaaagcttactacaaacatcacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccgctgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4537" stop="3438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4237" g_stop="3738" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E298525" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4237" e_stop="3738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAAGTTTACCATCAA-A-CACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCT</genome_strand>
        <mrna_strand>CTTCAAAAGCTTACTACAAACATCACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGCTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279424" ref_strand="+" ref_description="SGN-E279424 [cLER-11-B11]">
      <seq>tttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggcgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4528" stop="3438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4228" g_stop="3738" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279424" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4228" e_stop="3738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCT</genome_strand>
        <mrna_strand>TTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGCGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287319" ref_strand="+" ref_description="SGN-E287319 [cLES-15-D19]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcaacgagggtggacttgactacttgggcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3744" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E287319" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACC</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAACGAGGGTGGACTTGACTACTTGGGCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279657" ref_strand="+" ref_description="SGN-E279657 [cLER-5-G6]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3747" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279657" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCA</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284225" ref_strand="+" ref_description="SGN-E284225 [cLER-16-G22]">
      <seq>taccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4226" g_stop="3748" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284225" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4226" e_stop="3748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGC</genome_strand>
        <mrna_strand>TACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284130" ref_strand="+" ref_description="SGN-E284130 [cLER-13-D6]">
      <seq>gcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4485" stop="3449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4185" g_stop="3749" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284130" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4185" e_stop="3749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGG</genome_strand>
        <mrna_strand>GCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725527" ref_strand="+" ref_description="SGN-E725527 [LA03DF09]">
      <seq>gcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggcctaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagagtggacttgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4542" stop="3454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="3754" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725527" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="3754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTAC</genome_strand>
        <mrna_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGCCTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGAGTGGACTTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726019" ref_strand="+" ref_description="SGN-E726019 [LA10AC04]">
      <seq>gcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggcccgatcccagatcttcagcgagggtggacttgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4542" stop="3454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="3754" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726019" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="3754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTAC</genome_strand>
        <mrna_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCCGATCCCAGATCTTCAGCGAGGGTGGACTTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284196" ref_strand="+" ref_description="SGN-E284196 [cLER-16-M19]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccaaatcttcagcgagggtggacttgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3754" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284196" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTAC</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAAATCTTCAGCGAGGGTGGACTTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284365" ref_strand="+" ref_description="SGN-E284365 [cLER-16-K3]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3771" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284365" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCG</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324925" ref_strand="+" ref_description="SGN-E324925 [cTOC-11-C4]">
      <seq>aaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4540" stop="3483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4240" g_stop="3783" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E324925" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4240" e_stop="3783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCC</genome_strand>
        <mrna_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284180" ref_strand="+" ref_description="SGN-E284180 [cLER-16-E19]">
      <seq>agtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4530" stop="3483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4230" g_stop="3783" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284180" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4230" e_stop="3783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCC</genome_strand>
        <mrna_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279606" ref_strand="+" ref_description="SGN-E279606 [cLER-5-P22]">
      <seq>aaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgcgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgcgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggagtaaagtttggtgaggctgtgtggttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4540" stop="3493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4240" g_stop="3793" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279606" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4240" e_stop="3793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAG</genome_strand>
        <mrna_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGCGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGCGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGAGTAAAGTTTGGTGAGGCTGTGTGGTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285526" ref_strand="+" ref_description="SGN-E285526 [cLES-10-O3]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3796" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285526" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTC</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327160" ref_strand="+" ref_description="SGN-E327160 [cTOC-18-F7]">
      <seq>aaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaagctgtgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4540" stop="3499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4240" g_stop="3799" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E327160" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4240" e_stop="3799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGG</genome_strand>
        <mrna_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAAGCTGTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318937" ref_strand="+" ref_description="SGN-E318937 [cTOB-11-H24]">
      <seq>cacttacttttctcttgatataaacacaatggcagctgctacaatggctatttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcatcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4516" stop="3500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4216" g_stop="3800" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E318937" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4216" e_stop="3800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTG</genome_strand>
        <mrna_strand>CACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTATTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCATCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324541" ref_strand="+" ref_description="SGN-E324541 [cTOC-9-M20]">
      <seq>caaacttcaaaagtttaccatcaaacacttggttttctgttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3801" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E324541" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGT</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTGGTTTTCTGTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279841" ref_strand="+" ref_description="SGN-E279841 [cLER-8-J7]">
      <seq>aaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4519" stop="3509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4219" g_stop="3809" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279841" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4219" e_stop="3809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGA</genome_strand>
        <mrna_strand>AAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327249" ref_strand="+" ref_description="SGN-E327249 [cTOC-19-C10]">
      <seq>tcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcaaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4535" stop="3514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4235" g_stop="3814" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E327249" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4235" e_stop="3814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTT</genome_strand>
        <mrna_strand>TCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCAAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297827" ref_strand="+" ref_description="SGN-E297827 [cLET-38-B20]">
      <seq>aaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4519" stop="3514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4219" g_stop="3814" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E297827" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4219" e_stop="3814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTT</genome_strand>
        <mrna_strand>AAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278698" ref_strand="+" ref_description="SGN-E278698 [cLER-10-P12]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3821" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278698" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGT</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285456" ref_strand="+" ref_description="SGN-E285456 [cLES-10-O15]">
      <seq>aaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggggatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4519" stop="3525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4219" g_stop="3825" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285456" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4219" e_stop="3825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACG</genome_strand>
        <mrna_strand>AAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGGGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277663" ref_strand="+" ref_description="SGN-E277663 [cLER-6-O16]">
      <seq>aaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4540" stop="3526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4240" g_stop="3826" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277663" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4240" e_stop="3826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAAC</genome_strand>
        <mrna_strand>AAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288561" ref_strand="+" ref_description="SGN-E288561 [cLES-8-O2]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3826" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288561" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAAC</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295438" ref_strand="+" ref_description="SGN-E295438 [cLET-23-H6]">
      <seq>ccccgggctgcaggcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4534" stop="3527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3827" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="422" r_length="408" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295438" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAA</genome_strand>
        <mrna_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284558" ref_strand="+" ref_description="SGN-E284558 [cLES-3-P23]">
      <seq>accatcaaacactcacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4525" stop="3529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4225" g_stop="3829" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284558" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4225" e_stop="3829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGC</genome_strand>
        <mrna_strand>ACCATCAAACACTCACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292154" ref_strand="+" ref_description="SGN-E292154 [cLET-1-C12]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgcgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3835" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E292154" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTG</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGCGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297263" ref_strand="+" ref_description="SGN-E297263 [cLET-29-C22]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgggaactcgaagtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3835" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E297263" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTG</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGGGAACTCGAAGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277879" ref_strand="+" ref_description="SGN-E277879 [cLEL-5-D9](-)">
      <seq>aagagctcagggaaagacacatcccagagcaccaagcatagcccatctgcagtggatcacctcgagttcacggttcttggcaaaggtctcagggtctgctgaaagtccagcagtgtcccatccatagtcaccagggaattcaccggtcaagtaacttggggattcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagagggtgagagtttcaccgcctgtccagcaaaagaaggggaagaaagagccgggggggcagctgccattgtgtttctatccagagaaaagtaagtgtttgatggtaaacttttgaagtttgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3536" stop="4546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3836" g_stop="4243" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E277879" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3836" e_stop="4243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCTCA-GGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCT</genome_strand>
        <mrna_strand>AAGAGCTCAGGGAAAGACACATCCCAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAACTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCGGGGGGGCAGCTGCCATTGTGTTTCTATCCAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293721" ref_strand="+" ref_description="SGN-E293721 [cLET-21-L8]">
      <seq>caaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4541" stop="3537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4241" g_stop="3837" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293721" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4241" e_stop="3837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCT</genome_strand>
        <mrna_strand>CAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299087" ref_strand="+" ref_description="SGN-E299087 [cLET-42-A18]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3837" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E299087" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCT</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289880" ref_strand="+" ref_description="SGN-E289880 [cLET-9-P24]">
      <seq>agtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggggaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4530" stop="3537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4230" g_stop="3837" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289880" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4230" e_stop="3837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCT</genome_strand>
        <mrna_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGGGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471502" ref_strand="+" ref_description="SGN-E471502 [cSTB-24-A10]">
      <seq>taccatcaaacacttacttttctcttaatataaaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccgttctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaatcgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4226" g_stop="3837" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E471502" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4226" e_stop="3837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATCAAACACTTACTTTTCTCTTGATAT-AAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCT</genome_strand>
        <mrna_strand>TACCATCAAACACTTACTTTTCTCTTAATATAAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCGTTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAATCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312343" ref_strand="+" ref_description="SGN-E312343 [cTOA-5-O7]">
      <seq>aaacacttacttttctcttggtgtaaacgcaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcacaaatctctggaaatggaaggatcactatgagaaaagctgtcgccaagtctgccccatctagcaccccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaacttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccatgaactcgaagtgatccactgcagatgggctatgcttgccgctcttggatgtgtctttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4519" stop="3543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4219" g_stop="3843" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E312343" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4219" e_stop="3843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTG</genome_strand>
        <mrna_strand>AAACACTTACTTTTCTCTTGGTGTAAACGCAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCACAAATCTCTGGAAATGGAAGGATCACTATGAGAAAAGCTGTCGCCAAGTCTGCCCCATCTAGCACCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAACTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCATGAACTCGAAGTGATCCACTGCAGATGGGCTATGCTTGCCGCTCTTGGATGTGTCTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469566" ref_strand="+" ref_description="SGN-E469566 [cSTB-12-D23]">
      <seq>ttcaattttcataccatcaaacaattactttgttctcttgatataagcaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatctctatgagaaaggccgtcgccaagtctacctcatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagttacttgaccggtgaattccctggtgactacgggtgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4236" g_stop="3844" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E469566" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4236" e_stop="3844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAAGT-TTACCATCAAACACTTAC-TT-TTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCT</genome_strand>
        <mrna_strand>TTCAATTTTCATACCATCAAACAATTACTTTGTTCTCTTGATATAAGCACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCTCTATGAGAAAGGCCGTCGCCAAGTCTACCTCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317637" ref_strand="+" ref_description="SGN-E317637 [cTOB-8-F21]">
      <seq>agcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgtgaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactntcagcagaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4543" stop="3555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4243" g_stop="3855" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E317637" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4243" e_stop="3855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGAT</genome_strand>
        <mrna_strand>AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTGAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTNTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277128" ref_strand="+" ref_description="SGN-E277128 [cLEL-3-C12](-)">
      <seq>agagcatctagcatagcccatctgcagtggatcacctagagttcacggttcttggcaaaggtctcagggtatgctgaaagtccagcagtgtcccatccatagtcaccagggaattcaccggtcaagtaacttggggattcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagagggtgagagtttcaccgcctgtccagcaaaagaaggggaagaaagagccattgtagcagctgccactgtgtttatatcaagagaaaagtaagtgtttgatggtaaacttttgaagtttgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3560" stop="4546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3860" g_stop="4243" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E277128" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3860" e_stop="4243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCT</genome_strand>
        <mrna_strand>AGAGCATCTAGCATAGCCCATCTGCAGTGGATCACCTAGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTATGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAACTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCACTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540106" ref_strand="+" ref_description="SGN-E540106 [TUS-60-D9]">
      <seq>caaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcatttgctggacaagccgtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgcctagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacgtgaccggtgaattccctggagactatggatgggacactgctggactttcagcataccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcatatgggctatgcatgatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4534" stop="3561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4234" g_stop="3861" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E540106" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4234" e_stop="3861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTC</genome_strand>
        <mrna_strand>CAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAAGCCGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCTAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACGTGACCGGTGAATTCCCTGGAGACTATGGATGGGACACTGCTGGACTTTCAGCATACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCATATGGGCTATGCATGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293488" ref_strand="+" ref_description="SGN-E293488 [cLET-15-P1]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaacggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3899" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293488" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACT</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAACGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293489" ref_strand="+" ref_description="SGN-E293489 [cLET-15-P1](-)">
      <seq>agttcacggttcttggcaaaggtctcagggtctgctgaaagtccagcagtgtcccatccatagtcaccagggaattcaccggtcaagtaacttggggattcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccgtttccagagatttctgaggcagagggtgagagtttcaccgcctgtccagcaaaagaaggggaagaaagagccattgtagcagctgccattgtgtttatatcaagagaaaagtaagtgtttgatggtaaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3599" stop="4533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3899" g_stop="4233" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E293489" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3899" e_stop="4233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTT</genome_strand>
        <mrna_strand>AGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAACTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCGTTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221036" ref_strand="+" ref_description="SGN-E221036 [cLEL-22-L20](-)">
      <seq>acgaggatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagaccaataacaagaaccgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4500" stop="3602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4205" g_stop="3902" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E221036" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4205" e_stop="3902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGA</genome_strand>
        <mrna_strand>ACGAGGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCAATAACAAGAACCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221148" ref_strand="+" ref_description="SGN-E221148 [cLEL-22-G20](-)">
      <seq>ggcacgaggatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4500" stop="3602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4200" g_stop="3902" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="307" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E221148" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4200" e_stop="3902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGA</genome_strand>
        <mrna_strand>GATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221382" ref_strand="+" ref_description="SGN-E221382 [cLEL-22-L8](-)">
      <seq>ggcacgaggatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4500" stop="3602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4200" g_stop="3902" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="307" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E221382" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4200" e_stop="3902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGA</genome_strand>
        <mrna_strand>GATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226627" ref_strand="+" ref_description="SGN-E226627 [cLEL-26-P11](-)">
      <seq>ggcacgaggatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4500" stop="3602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4200" g_stop="3902" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="307" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E226627" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4200" e_stop="3902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGA</genome_strand>
        <mrna_strand>GATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221279" ref_strand="+" ref_description="SGN-E221279 [cLEL-22-G20](-)">
      <seq>atataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttggggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagaccttaacaaagaaccgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4499" stop="3602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4199" g_stop="3902" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E221279" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4199" e_stop="3902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTT-GGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGA</genome_strand>
        <mrna_strand>ATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTAACAAAGAACCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215600" ref_strand="+" ref_description="SGN-E215600 [cLEL-15-G6](-)">
      <seq>ggcaccagatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgacaagaaccgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4386" stop="3602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4094" g_stop="3902" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E215600" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4094" e_stop="3902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGA</genome_strand>
        <mrna_strand>GGCACCAGATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGACAAGAACCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730140" ref_strand="+" ref_description="SGN-E730140 [LA23AG07]">
      <seq>gcaaacttcaaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4542" stop="3603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4242" g_stop="3903" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4242" e_stop="3903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTG</genome_strand>
        <mrna_strand>GCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735745" ref_strand="+" ref_description="SGN-E735745 [LC02DD09]">
      <seq>cattttaccatcaaacacttacttttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4530" stop="3603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4231" g_stop="3903" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E735745" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4231" e_stop="3903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTG</genome_strand>
        <mrna_strand>CATTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739646" ref_strand="+" ref_description="SGN-E739646 [LC18BB09]">
      <seq>aagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4531" stop="3603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4231" g_stop="3903" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E739646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4231" e_stop="3903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTG</genome_strand>
        <mrna_strand>AAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740850" ref_strand="+" ref_description="SGN-E740850 [LC23AF07]">
      <seq>aagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagctacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4531" stop="3603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4231" g_stop="3903" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E740850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4231" e_stop="3903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTG</genome_strand>
        <mrna_strand>AAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226437" ref_strand="+" ref_description="SGN-E226437 [cLEL-26-P11](-)">
      <seq>tccccttcttttgctggacaggcggtgacactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatcgagcagcccatggtatggccctgaccgtgttaagggcttgggcccattctctggtgcatccccaagtaacttgaccggtggatcccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttgccaagaaccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4461" stop="3604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4161" g_stop="3904" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E226437" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4161" e_stop="3904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGT</genome_strand>
        <mrna_strand>TCCCCTTCTTTTGCTGGACAGGCGGTGACACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCGAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGGGCTTGGGCCCATTCTCTGGTGCATCCCCAAGTAACTTGACCGGTGGATCCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277773" ref_strand="+" ref_description="SGN-E277773 [cLEL-5-L19](-)">
      <seq>ggttcttggcaaaggtttcagggtctgctgaaagtccagcagtgtcccatccatagtcaccagggaattcaccggtcaagtaacttggggattcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagagggtgagagtttcaccgcctgtccagcaaaagaaggggaagaaagagccattggagcagctgccattgtgtttatatcaagagaaaagtaagtgtttgatggtaaacttttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3606" stop="4533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3906" g_stop="4240" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E277773" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3906" e_stop="4240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTT</genome_strand>
        <mrna_strand>GGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAACTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGGAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284166" ref_strand="+" ref_description="SGN-E284166 [cLER-13-P20]">
      <seq>aaaagtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctgagacctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4533" stop="3615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4233" g_stop="3915" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284166" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4233" e_stop="3915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTG</genome_strand>
        <mrna_strand>AAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278260" ref_strand="+" ref_description="SGN-E278260 [cLER-9-J21]">
      <seq>taccatggaacactgacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgaatccccaagttacttgaccggtgaattccctggtgactatggatgggacactgctggactttcagcagaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4526" stop="3624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4226" g_stop="3924" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278260" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4226" e_stop="3924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTG</genome_strand>
        <mrna_strand>TACCATGGAACACTGACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474309" ref_strand="+" ref_description="SGN-E474309 [cSTB-36-I5]">
      <seq>ctcagtccactctttttataaaccatggcatctgctacaaggggtgttttttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccataccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtggcataccgctggactttcatcagaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4505" stop="3624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4214" g_stop="3924" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E474309" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4214" e_stop="3924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTG</genome_strand>
        <mrna_strand>CTCAGTCCACTCTTTTTATAAAC-CA-TGGCATCTGCTACAAGGGGTGTTTTTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCATACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGCATACCGCTGGACTTTCATCAGACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476105" ref_strand="+" ref_description="SGN-E476105 [cSTB-43-G22]">
      <seq>aatggctctttcttccccttcctttgctggacaggcagagaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggcatggcccataccgtgttaagcactagggcccattctctggagagtccccaagctacttgaccggtgaattccctggtgactatgggtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4474" stop="3650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4174" g_stop="3950" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E476105" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4174" e_stop="3950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGA</genome_strand>
        <mrna_strand>AATGGCTCTTTCTTCCCCTTCCTTTGCTGGACAGGCAGAGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGCATGGCCCATACCGTGTTAAGCACTAGGGCCCATTCTCTGGAGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280930" ref_strand="+" ref_description="SGN-E280930 [cLEL-6-P12](-)">
      <seq>agggaattcaccggtcaagtaacttggggattcaccagagaatgggcccaagtacttaacacggtcagggccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagagggtgagagtttcaccgcctgtccagcaaaagaaggggaagaaagagccatggtagcagctgccattgtgtttatctcaagagaaaagtaagtgtttgatagtaaacttttgaagtttgcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="3667" stop="4546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3967" g_stop="4250" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E280930" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3967" e_stop="4250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCTGTGATGA</genome_strand>
        <mrna_strand>AGGGAATTCACCGGTCAAGTAACTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATGGTAGCAGCTGCCATTGTGTTTATCTCAAGAGAAAAGTAAGTGTTTGATAGTAAACTTTTGAAGTTTGC-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290255" ref_strand="+" ref_description="SGN-E290255 [cLET-5-H21]">
      <seq>agtttaccatcaaacacttacttttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgggttaagtacttgggcccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="4530" stop="3706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4230" g_stop="4006" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290255" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4230" e_stop="4006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTC</genome_strand>
        <mrna_strand>AGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGGGTTAAGTACTTGGGCCCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297157" ref_strand="+" ref_description="SGN-E297157 [cLET-29-M21]">
      <seq>tttttttttataagaaaaatcaattctattgttcaagtaaactcacaaattacaactttacatggtcaacaaatgatcagaaacttgagaatgttttaagatttttattttccggggacaaagtttgtggcgtaagaccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggtccctttccagtaacaatggcttgaacaaagaatccaaacatagagaacatagcaagtctaccgctcttaatctcctttaccttgagctcagcaaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="5436" stop="6318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5728" g_stop="6018" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E297157" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5728" e_stop="6018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAAGATGTAAGAAAAATCAATTCTATTGTTCAAGTTAACTCACAAATTACAACTTTACATGGTCAACAAATGATCAGAAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAGGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCC</genome_strand>
        <mrna_strand>TTTTTTTTTATAAGAAAAATCAATTCTATTGTTCAAGTAAACTCACAAATTACAACTTTACATGGTCAACAAATGATCAGAAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAAGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGCTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726270" ref_strand="+" ref_description="SGN-E726270 [LA11BD02]">
      <seq>catcaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggnagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgccctggtcctacgccacaaacttttgtccccggaaaataaaaaatctaaaaacattctcaagtttctgatcatttgttgaccatgtaaagttggtaatttgtgagttaaccttgaacaaatagaattgatttttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="5729" g_length="952"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="958" r_length="958" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726270" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>952</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="5729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACG-CCTGGTCCTACGCCACAAAC-TTTGTCCCCGGAAAAT-AAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTT-GTAATTTGTGAGTTAA-CTTGAAC-AATAGAATTGATTTTTCTTACATCTTATT</genome_strand>
        <mrna_strand>CATCAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGNAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCCTGGTCCTACGCCACAAACTTTTGTCCCCGGAAAATAAAAAATCTAAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGGTAATTTGTGAGTTAACCTTGAACAAATAGAATTGATTTTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733169" ref_strand="+" ref_description="SGN-E733169 [LB04AF06]">
      <seq>gggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagttaacttgaacaatagaattgatttttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6510" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6210" g_stop="5729" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733169" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6210" e_stop="5729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTACATCTTATT</genome_strand>
        <mrna_strand>GGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733391" ref_strand="+" ref_description="SGN-E733391 [LB04DB02]">
      <seq>gggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagttaacttgaacaatagaattgatttttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6510" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6210" g_stop="5729" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733391" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6210" e_stop="5729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTACATCTTATT</genome_strand>
        <mrna_strand>GGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728121" ref_strand="+" ref_description="SGN-E728121 [LA16DB02]">
      <seq>acgaagggctctttttgactacttgggcaacccaagcttggtccatgcacacagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattacgccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagttaacttgaacaatagaattgatttttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6502" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6202" g_stop="5729" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="488" r_length="474" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728121" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6202" e_stop="5729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTACATCTTATT</genome_strand>
        <mrna_strand>TTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACACAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTACGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730646" ref_strand="+" ref_description="SGN-E730646 [LA24DA06]">
      <seq>ccataatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatctttaaaccatctcaagtttctgatcatttgntgaccatgtaaagttgtaatttgtgaagtaaacttgaacaatagaattgatttttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="5730" g_length="951"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="952" r_length="952" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730646" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>951</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="5730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTG-AGTTAACTTGAACAATAGAATTGATTTTTCTTACATCTTAT</genome_strand>
        <mrna_strand>CCATAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTTAAACCATCTCAAGTTTCTGATCATTTGNTGACCATGTAAAGTTGTAATTTGTGAAGTAAACTTGAACAATAGAATTGATTTTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727533" ref_strand="+" ref_description="SGN-E727533 [LA14DH09]">
      <seq>ccaacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagntgtaatttgggaattaacttgaacaataaaattgatttttcttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6987" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6687" g_stop="5732" g_length="956"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="956" r_length="956" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727533" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>956</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6687" e_stop="5732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTACATCTT</genome_strand>
        <mrna_strand>CCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGNTGTAATTTGGGAATTAACTTGAACAATAAAATTGATTTTTCTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730381" ref_strand="+" ref_description="SGN-E730381 [LA23DH01]">
      <seq>caacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaataaaaatcttaaacattctcagtttctgatcattggtgaccatgtaaaagtgtaatttgtgagttaacttgaacaataaaattgatttttctacatcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="5732" g_length="949"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="944" r_length="944" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730381" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>949</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="5732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTACATCTT</genome_strand>
        <mrna_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGG-AAATAAAAATCTT-AAACATTCTC-AGTTTCTGATCA-TTGGTGACCATGTAAAAGTGTAATTTGTGAGTTAACTTGAACAATAAAATTGATTTTTC-TACATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733772" ref_strand="+" ref_description="SGN-E733772 [LB10DF05]">
      <seq>aatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaatcttaaaacatctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgaattaacttgaacaatagaattggatttttcttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6976" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6676" g_stop="5733" g_length="944"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="943" r_length="943" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733772" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>944</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6676" e_stop="5733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATT-GATTTTTCTTACATCT</genome_strand>
        <mrna_strand>AATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAAT-AAAATCTTAAAACA-TCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAATTAACTTGAACAATAGAATTGGATTTTTCTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299162" ref_strand="+" ref_description="SGN-E299162 [cLET-42-F6]">
      <seq>ttttttaagaaaaatcaattctattgttcaagtaaactcacaaattacaactttacatggtcaacaaatgatcagaaacttgagaatgttttaagatttttattttccggggacaaagtttgtggcgtaagaccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggtccctttccagtaacaatggcttgaacaaagaatccaaacatagagaacatagcaagtctaccgttcttaatctcctttaccttgagctcagcaaatgcctcagggtcttcagcaaggcctaatgggtcgaagctgccacctgggtagagtgggtctacaacctcaccaagaggtccaccagcaatacggtaaccttcaacggctcccatgagtacaacttggcaagcccagatggccaagatgctctgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccctcactgaagatttgagatccagccttgaaccagacagcctcaccaaacttgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="5436" stop="6565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5733" g_stop="6265" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E299162" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5733" e_stop="6265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTAAGAAAAATCAATTCTATTGTTCAAGTTAACTCACAAATTACAACTTTACATGGTCAACAAATGATCAGAAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAGGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCTACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGATCCAGCCTTGAACCAGACAGCCTCACCAAACTTGACAC</genome_strand>
        <mrna_strand>TTTTTTAAGAAAAATCAATTCTATTGTTCAAGTAAACTCACAAATTACAACTTTACATGGTCAACAAATGATCAGAAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAAGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCTGGGTAGAGTGGGTCTACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGATCCAGCCTTGAACCAGACAGCCTCACCAAACTTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726955" ref_strand="+" ref_description="SGN-E726955 [LA13BC04]">
      <seq>cggtcaacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtanaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgcccacaacttttgtcccggaaataaaaatcttaaacattctcaagtttctgatcatttgttgacatgtaaagntgtaatttggtgagtaacttgaaacatagaattgatttttcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6990" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6690" g_stop="5737" g_length="954"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="951" r_length="951" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="952" polyA_stop="970"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726955" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>954</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6690" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACG-CCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTT-GTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>CGGTCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTANAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCCACAACTTTTGT-CCCGG-AAATAAAAATCTT-AAACATTCTCAAGTTTCTGATCATTTGTTGA-CATGTAAAGNTGTAATTTGGTGAG-TAACTTGAAACATAGAATTGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727068" ref_strand="+" ref_description="SGN-E727068 [LA13CE10]">
      <seq>gccaacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaacatgtaaaaggtgtaattttgtgagttacttgaacaataaaattgatttttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6988" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6688" g_stop="5737" g_length="952"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="953" r_length="953" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="954" polyA_stop="963"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727068" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>952</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6688" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGT-AAAGTTGTAA-TTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGAACATGTAAAAGGTGTAATTTTGTGAGTT-ACTTGAACAATAAAATTGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735010" ref_strand="+" ref_description="SGN-E735010 [LB14AG05]">
      <seq>gcctacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaatcttaaaacattctcaagtttctgatcatttgttgaacatgtaaagttgtaatttggagttaacttgaacaatagaatttgatttttcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6988" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6688" g_stop="5737" g_length="952"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="951" r_length="951" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="952" polyA_stop="963"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E735010" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>952</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6688" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAA-TTGATTTTTCTTAC</genome_strand>
        <mrna_strand>GCCTACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAAT-AAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGAACATGTAAAGTTGTAATTTG-GAGTTAACTTGAACAATAGAATTTGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730091" ref_strand="+" ref_description="SGN-E730091 [LA23AB07]">
      <seq>gccaacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatctaaaacattctcaagttctgatcatttgttgaccatgtaaagttgtaatttgtgagttaactgaacaatagaatgatttttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6988" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6688" g_stop="5737" g_length="952"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="948" r_length="948" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="949" polyA_stop="958"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730091" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>952</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6688" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATC-TAAAACATTCTCAAG-TTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAAC-TGAACAATAGAA-TGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732630" ref_strand="+" ref_description="SGN-E732630 [LB02CG12]">
      <seq>gcctacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaaattgtaatttgggagttaccttgaacaatagaattgatttttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6988" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6688" g_stop="5737" g_length="952"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="952" r_length="952" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="953" polyA_stop="962"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732630" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>952</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6688" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>GCCTACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAATTGTAATTTGGGAGTTACCTTGAACAATAGAATTGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730404" ref_strand="+" ref_description="SGN-E730404 [LA24AB04]">
      <seq>ccctacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgaggtaaactgaacaatagaattgatttttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6987" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6687" g_stop="5737" g_length="951"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="952" r_length="951" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="953" polyA_stop="969"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730404" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>951</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6687" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>CCTACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGGTAAACTGAACAATAGAATTGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736382" ref_strand="+" ref_description="SGN-E736382 [LC05CD03]">
      <seq>cgattatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggnaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaacatttcccagtttctgatcatttgttgaccatgtaaagttgtaatttgggagttaccttgaacaataaaattgatttttcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="5737" g_length="944"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="943" r_length="943" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E736382" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>944</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>CGATTATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGNAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTT-AAACATTTCCCAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGGGAGTTACCTTGAACAATAAAATTGATTTTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726415" ref_strand="+" ref_description="SGN-E726415 [LA11DA04]">
      <seq>caatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaataaaaatcttaaacattctcagttctgatcatttgtgaccatgtaaattgtaatttgtgagtaactttgaacatagaattgatttttcctacaaaaaaaaaaaaaaaaaaaaaaaaacccagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6977" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6677" g_stop="5737" g_length="941"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="934" r_length="934" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="935" polyA_stop="960"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726415" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6677" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>CAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGG-AAATAAAAATCTT-AAACATTCTC-AG-TTCTGATCATTTG-TGACCATGTAAA-TTGTAATTTGTGAGTAACTTTGAAC-ATAGAATTGATTTTTCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733863" ref_strand="+" ref_description="SGN-E733863 [LB11AF02]">
      <seq>atctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaaagtgtaatttgtgagttaactgaaacaataaaatgatttttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6973" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6673" g_stop="5737" g_length="937"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="936" r_length="936" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="937" polyA_stop="953"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733863" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>937</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6673" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>ATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAAGTGTAATTTGTGAGTTAACTGAAACAATA-AAATGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371436" ref_strand="+" ref_description="SGN-E371436 [TUS-29-H14](-)">
      <seq>tgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcttacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagtttacttgaacaatagaattgatttttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6768" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6468" g_stop="5737" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E371436" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6468" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>TGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCTTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTTACTTGAACAATAGAATTGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298004" ref_strand="-" ref_description="SGN-E298004 [cLET-38-N12]">
      <seq>ggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcttacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagtttacttgaacaatagaattgatttttcttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6636" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6336" g_stop="5737" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="614"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E298004" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298004" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6336" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>GGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCTTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTTACTTGAACAATAGAATTGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203293" ref_strand="+" ref_description="SGN-E203293 [cLEB-3-D21](-)">
      <seq>tcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagggcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcttacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagtttacttgaacaatagaattgatttttcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6525" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6225" g_stop="5737" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="509"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E203293" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6225" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>TCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGGGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCTTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTTACTTGAACAATAGAATTGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284030" ref_strand="-" ref_description="SGN-E284030 [cLER-13-G23]">
      <seq>catctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacatgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatccccttgcagacccagtaaacaacaacgcctggtcttacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagtttacttgaacaatagaattgatttttcttataaaaaaaaaaaaaaaaaactcggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6453" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6153" g_stop="5737" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="436"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284030" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284030" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6153" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>CATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACATGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCCCCTTGCAGACCCAGTAAACAACAACGCCTGGTCTTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTTACTTGAACAATAGAATTGATTTTTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300457" ref_strand="+" ref_description="SGN-E300457 [cLET-45-H11]">
      <seq>gcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcttacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagtttacttgaacaatagaattgatttttcttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6446" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6146" g_stop="5737" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="423"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E300457" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6146" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>GCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCTTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTTACTTGAACAATAGAATTGATTTTTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286974" ref_strand="+" ref_description="SGN-E286974 [cLES-6-E14]">
      <seq>cagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcttacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagtttacttgaacaatagaattgatttttcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6353" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6054" g_stop="5737" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="329"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E286974" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6054" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>CAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCTTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTTACTTGAACAATAGAATTGATTTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278760" ref_strand="+" ref_description="SGN-E278760 [cLER-2-I4]">
      <seq>ctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcttacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagtttacttgaacaatagaattgatttttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6331" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6031" g_stop="5737" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="305"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278760" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6031" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>CTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCTTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTTACTTGAACAATAGAATTGATTTTTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279006" ref_strand="+" ref_description="SGN-E279006 [cLER-2-H4]">
      <seq>ctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcttacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagtttacttgaacaatagaattgatttttcttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6331" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6031" g_stop="5737" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="305"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279006" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6031" e_stop="5737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTAC</genome_strand>
        <mrna_strand>CTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCTTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTTACTTGAACAATAGAATTGATTTTTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726593" ref_strand="+" ref_description="SGN-E726593 [LA12BB03]">
      <seq>caacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaaagttctgatcatttgttgaccatgtaaagttgtaatttgtgagttaacttgaacaataaaattgatttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="5739" g_length="942"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="942" r_length="942" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726593" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="5739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTT</genome_strand>
        <mrna_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAAGTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAAAATTGATTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729648" ref_strand="+" ref_description="SGN-E729648 [LA21CG03]">
      <seq>cttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtggagtaaccttgaacaatagaattgatttttccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6983" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6683" g_stop="5741" g_length="943"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="944" r_length="944" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="948" polyA_stop="957"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729648" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>943</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6683" e_stop="5741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGT-GAGTTAACTTGAACAATAGAATTGATTTTTC</genome_strand>
        <mrna_strand>CTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGGAGTAACCTTGAACAATAGAATTGATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739773" ref_strand="+" ref_description="SGN-E739773 [LC18DB12]">
      <seq>cgctaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagttaacttgaacaatagaattgatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6813" stop="5441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6513" g_stop="5741" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E739773" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6513" e_stop="5741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTC</genome_strand>
        <mrna_strand>CGCTAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343860" ref_strand="+" ref_description="SGN-E343860 [cTOF-12-D15]">
      <seq>ttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttgaatggcttttctgtactgagtttcattttcccaagtcaactcataaatcaagcacttaacatgataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6725" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6425" g_stop="5742" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343860" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6425" e_stop="5742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTT</genome_strand>
        <mrna_strand>TTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGT-A---GTGTGCT-ACCTG-ACAATATAATGAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738177" ref_strand="+" ref_description="SGN-E738177 [LC12CF10]">
      <seq>ctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagttaacttgaacaatagaattgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6946" stop="5443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6646" g_stop="5743" g_length="904"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="904" r_length="904" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E738177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6646" e_stop="5743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTT</genome_strand>
        <mrna_strand>CTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726783" ref_strand="+" ref_description="SGN-E726783 [LA12DC02]">
      <seq>ctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgttgaccatgtaaagttgtaatttgtgagttaacttgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6922" stop="5457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6622" g_stop="5757" g_length="866"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="866" r_length="866" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726783" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6622" e_stop="5757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACA</genome_strand>
        <mrna_strand>CTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541568" ref_strand="+" ref_description="SGN-E541568 [TUS-62-G20]">
      <seq>gtcaggtagcacactacatctttacactgtcatcaaacgaccagagacttgagaacgttttaagagattcattttccggggacaaagtttgtggcgaaagcccaggcattgttgtttacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtgacaatagcttgaacaaagaatccaaacatatagaacatagcaagtctaccgttcttgatctcctttaccttgagctcagcaaatgcctctgggtcttcagcaaggcctaatgggtcgaagctgccaccagggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtatccctcaacagctcccatcaacacaacttggcaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccttcactgaagatctgggatccggccttgaaccacacagcctcaccgaacttgacaccattacgggccaagagctcatggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagttcacggttcttggcaaaagtttcagggtctgctgaaagtccagcggtatcccacccgtaatcaccagggaattcaccggtcaagtagcttggggactcaccagataatgagcccaagtacttaacacggtcagggccataccatgtgctgctagatggggcggacttggcacagcctttctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="5464" stop="6827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5764" g_stop="6527" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E541568" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5764" e_stop="6527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACTCACAAATTACAACTTTACATGGTCAACAAATGATCAGAAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAGGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCTACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGATCCAGCCTTGAACCAGACAGCCTCACCAAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCTGGATCTGCTGAAAGTCCAGCGGTGTCCCACCCGTAGTCACCAGGGAATTCACCATTCAAGTAGCTAGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTTGCGACAGCCTTTCTCAT</genome_strand>
        <mrna_strand>GTCAGGTAGCACACTACATCTTTACACTGTCATCAAACGACCAGAGACTTGAGAACGTTTTAAGAGATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAGGCATTGTTGTTTACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATATAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTATCCCTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCTTCACTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAAGAGCTCATGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGATAATGAGCCCAAGTACTTAACACGGTCAGGGCCATACCATGTGCTGCTAGATGGGGCGGACTTGGC-ACAGCCTTTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278999" ref_strand="+" ref_description="SGN-E278999 [cLER-2-F2]">
      <seq>tttttttcaaacacaaacaaaatttcattatattgtcaggtagcacactacatctttacactgtcatcaaacgaccagagacttgagaacgttttaagagattcattttccggggacaaagtttgtggcgaaagcccaggcattgttgtttacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtgacaatagcttgaacaaagaatccaaacatagagaacatagcaagtctaccgttcttgatctcctttaccttgagctcagcaaatgcctctgggtcttcagcaaggcctaatgggtcgaagctgccaccagggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtatccctcaacagctcccatcaacacaacttggcaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtagtcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="5464" stop="6504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5774" g_stop="6204" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="475" r_length="431" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E278999" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5774" e_stop="6204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTACAACTTTACATGGTCAACAAATGATCAGAAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAGGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCTACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGT</genome_strand>
        <mrna_strand>ACACTACATCTTTACACTGTCATCAAACGACCAGAGACTTGAGAACGTTTTAAGAGATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAGGCATTGTTGTTTACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTATCCCTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728345" ref_strand="+" ref_description="SGN-E728345 [LA17CB03]">
      <seq>cacctatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtcccccggaaataaaatnctaaaacatttctcaggttctgatcatttgttgaccatgtaaagttgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="5777" g_length="904"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="903" r_length="903" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728345" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="5777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAA</genome_strand>
        <mrna_strand>CACCTATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCCGGAAAT-AAAATNCTAAAACATTTCTCAGGTTCTGATCATTTGTTGACCATGTAAAGTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343750" ref_strand="+" ref_description="SGN-E343750 [cTOF-20-L6]">
      <seq>ttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgttttgtgtttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14135" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11394" g_stop="11230" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11229" i_stop="8588" i_length="2642">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8587" g_stop="8373" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="381" r_length="215" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8372" i_stop="5973" i_length="2400">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5972" g_stop="5778" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="576" r_length="195" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343750" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11394" e_stop="11230"/>
          <exon e_start="8587" e_stop="8373"/>
          <exon e_start="5972" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACTTTTCTCTTAATATAAA-TCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTAATCCTGAGTTACATTTTTCAAAGCCACGAATAAAAAATATTGCCACTTTTATACCAAAGGGTAGAAGAAAGAGACCAAAGAAAAAATAATTGAGAATTAAGATGTCGTAACTAGAAAAACTATATGCTGTTATAAGATTAAAACTTGAATTATGGAATTCAATTAATTCTGGATAAGCAATACTCAAAATTAGTGTAAAGTACTAATGTTGAACACCATGACGTTATTACATGATTCCTTATTTTTCTATCGAGAAGCGAAAGAGGAAATAAGAAGACATTGTTTCATTTCAATGCTAAGTGAAAACCAATGTGTTTAACATATGACTTTACAGGTCCTTGCATTATATGTCCTGTGAAAAAATTCATAAATTTCTTGAAAAATCATCCTTCATAACATTGATACCATCTTTAGATTAAAAGATCTTTCCAAACAAGGCGCATAGTAATGACCATAGCCAAAGCACATACTTGTATAGTTAGTTCGCAGAAGAGACAACATGACACTTATTGGCAACAAATTTAAGCTATGCACTGGTAATATAAAAATTATATACAATCAGTTTTACTTATAAAGTAATATATGTAAATCCGTTGATAACCATTACTCCAATGGTAGTCTCGTAAAAATAGGGAATTGACTTACTATCACATGTTAAATTTTATGGATACGGCAAAAACATCTTTATACTGTCAGTGTATATAACTTAAATCTACAATTAGTAAAAATATATTGTGGTGCTGATGAATTCTAACAAATTAACGTGTTTGTTCATGTTCTTCTGAATAAGCTCTTTCAGAGTTTCACCATTGCTCATGTAGCAGTTAAGTACTGGAACTAAGCCGCATTAAATCTGTAAACATGAATTAACAATGTCTTGAATGAGCATAAAACAAGATAGCATGTGTTGCTGACATAAACAACTTTGTCAATTGGGGTCTAATATGTTAATAAAGTTTCAATCACATTGTTTTCCAAACATAAACATGCATTATTAATTTCCCACAATTTATGCATCAAGGTGGTAATAAATTTAAACTTCTCCTCGAATTTCCTAAACCATAGTTCTACATCTTTTACCCTGCAGGTAGACAAAATCTATAGAAATGGCAAGTGGATAATGATAGGGATATCATATTGTAAGCTCAATATATCACAGGGTGGATTTCAATCCTTGTGGCAATATATGAGAGGACAATACTGAATGTGTCCCTTCTTGGAAAATTAATGAGTTGTAGATTCAAGTTGCTACAATATATGGGATCTTGATATCCAATGAGATCATATGTATAGATATCACTGGATAAGAGGATTCTCTCTCTCTAATTACCTCCTATATATTCTGAACCCCAACTACTTCAGCTTCATCACAACCAACTTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAACTATGGTGTAGTATATAATTCCATTTTCCAATTGCATGAATGAAATACTGCAAGATTCATATCAAAGGGGGAAAAAAGATGACTAAGCAAAAACAAAAAAGAAAAACCAATATACATTTGGAATGTGGTAAAAGCTTAAATCTTGAATATACAGACACAGGAACTTAAGGAATTCAATTTATCCTCAAGAATCAATAATAGTCTTAACTTAATGCCAAGAATAACATTGAACAACATGATGTTATTGACATGATTCCTAATTTTTCTATCTGAGAAGTGAGATGATTTAAGAGTACATAACAATTTTTCACTTCTACATCATTGACATTTCATTGATGAGAGAAAACCAATGCTGTGTGTTATGTAATCTGAACGTAGCAAGTAAAAGCATCTATGCAACTGCTTATATAACAGAGGCAGGTATCCTCCAAAGATGGCATATAGTAACGAGTAACGACCAGAGCCAAAATTAAGGAAATAGTAAGCAGAAGATACAAGAAACTAAGATATACATGACACTTATTATAAAGGAAAATAAGTTCTAAGCATTGACATTGTAAAAATGCTAATGCTCATGTCACTTATTAACAAGGGCAGGGGTAAGCTTCATCATGCATATTTGACAGAACCAATTAAGTAGTTTTGGTTCAAACAAATATATATAAGTGTTAAGAAACAAACAAATTAAATTGAGGAATTCATTTACTAGTAACTAAATGAAACATATACAGAATGTTCTATGACTATAAATGCCTCTTCATGACCATAAGATTTTTAAAAATCCATGCATGGACCTTGGTTGAAAGAGAATATGATATTCTGCATTGCCTTAATGTCGCCAAATGCTATAGTGACTCTTGGATGCAATGACATTATATCAAAGCTGCTAAATGTTTTTACGGAAAATCTTTTGTCATTGAATGTCTCTTTTGTTGTAGTGATATGTGTTAAAGAAATTCATCAACACAAATTAAATTTAGAATCTGTTTATCAGAATCCATAAAGTTCAAATCTTGATCCACATTTGCTTATGAAGTAAATAGAGGTTAAACATGAATTGATAATATGATAAAAATGAGTTTCAGCTTTTCCTCAATTTATTTAGTGAAGGCTTAACCATAGTTCTACATTGAATAAGCTTTAGTGCTGATAGATAAAATTTGGATAAATTCCAAATGGATAATGATAAGAGATATCAGTGTATTGTAAGCTCAACAAATCAGAGGGTAGAGTTCAATCCTTGTATCCACACATAGGAGGACAGTATTGGATGGGTCCCTTCAGTAAACATCTTAAAAAATTAGAAGGATTAGAGATTGTCAAGTTGCATTCATTGCTACACTTAGGATCTTGATATCCAATGAGATCATAGATATAGATATCATTAGATAATTTGGACTCTTTCCCTCTTAATTACTCCCTATATATATGGTGAATTAATTCCTTGTAACTTCATCTCATTACAGCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>TTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229291" ref_strand="+" ref_description="SGN-E229291 [cLEL-29-N20](-)">
      <seq>aaaaaaaaaaaaaaaaaactcggagctctgggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="40605" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9359" g_stop="9342" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.556"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9341" i_stop="8689" i_length="653">
            <donor d_prob="0.886" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8688" g_stop="8373" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="334" r_length="316" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8372" i_stop="5973" i_length="2400">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5972" g_stop="5778" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="529" r_length="195" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E229291" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9359" e_stop="9342"/>
          <exon e_start="8688" e_stop="8373"/>
          <exon e_start="5972" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTATAGAAATGGCAAGTGGATAATGATAGGGATATCATATTGTAAGCTCAATATATCACAGGGTGGATTTCAATCCTTGTGGCAATATATGAGAGGACAATACTGAATGTGTCCCTTCTTGGAAAATTAATGAGTTGTAGATTCAAGTTGCTACAATATATGGGATCTTGATATCCAATGAGATCATATGTATAGATATCACTGGATAAGAGGATTCTCTCTCTCTAATTACCTCCTATATATTCTGAACCCCAACTACTTCAGCTTCATCACAACCAACTTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAACTATGGTGTAGTATATAATTCCATTTTCCAATTGCATGAATGAAATACTGCAAGATTCATATCAAAGGGGGAAAAAAGATGACTAAGCAAAAACAAAAAAGAAAAACCAATATACATTTGGAATGTGGTAAAAGCTTAAATCTTGAATATACAGACACAGGAACTTAAGGAATTCAATTTATCCTCAAGAATCAATAATAGTCTTAACTTAATGCCAAGAATAACATTGAACAACATGATGTTATTGACATGATTCCTAATTTTTCTATCTGAGAAGTGAGATGATTTAAGAGTACATAACAATTTTTCACTTCTACATCATTGACATTTCATTGATGAGAGAAAACCAATGCTGTGTGTTATGTAATCTGAACGTAGCAAGTAAAAGCATCTATGCAACTGCTTATATAACAGAGGCAGGTATCCTCCAAAGATGGCATATAGTAACGAGTAACGACCAGAGCCAAAATTAAGGAAATAGTAAGCAGAAGATACAAGAAACTAAGATATACATGACACTTATTATAAAGGAAAATAAGTTCTAAGCATTGACATTGTAAAAATGCTAATGCTCATGTCACTTATTAACAAGGGCAGGGGTAAGCTTCATCATGCATATTTGACAGAACCAATTAAGTAGTTTTGGTTCAAACAAATATATATAAGTGTTAAGAAACAAACAAATTAAATTGAGGAATTCATTTACTAGTAACTAAATGAAACATATACAGAATGTTCTATGACTATAAATGCCTCTTCATGACCATAAGATTTTTAAAAATCCATGCATGGACCTTGGTTGAAAGAGAATATGATATTCTGCATTGCCTTAATGTCGCCAAATGCTATAGTGACTCTTGGATGCAATGACATTATATCAAAGCTGCTAAATGTTTTTACGGAAAATCTTTTGTCATTGAATGTCTCTTTTGTTGTAGTGATATGTGTTAAAGAAATTCATCAACACAAATTAAATTTAGAATCTGTTTATCAGAATCCATAAAGTTCAAATCTTGATCCACATTTGCTTATGAAGTAAATAGAGGTTAAACATGAATTGATAATATGATAAAAATGAGTTTCAGCTTTTCCTCAATTTATTTAGTGAAGGCTTAACCATAGTTCTACATTGAATAAGCTTTAGTGCTGATAGATAAAATTTGGATAAATTCCAAATGGATAATGATAAGAGATATCAGTGTATTGTAAGCTCAACAAATCAGAGGGTAGAGTTCAATCCTTGTATCCACACATAGGAGGACAGTATTGGATGGGTCCCTTCAGTAAACATCTTAAAAAATTAGAAGGATTAGAGATTGTCAAGTTGCATTCATTGCTACACTTAGGATCTTGATATCCAATGAGATCATAGATATAGATATCATTAGATAATTTGGACTCTTTCCCTCTTAATTACTCCCTATATATATGGTGAATTAATTCCTTGTAACTTCATCTCATTACAGCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>AAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGAGCTCTGGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734723" ref_strand="+" ref_description="SGN-E734723 [LB13BF12]">
      <seq>tgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6816" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6516" g_stop="5778" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734723" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6516" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>TGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E616967" ref_strand="+" ref_description="SGN-E616967 [90439]">
      <seq>gcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgacttacggtggggaataccgttggaactttccagcaaacccttgaaaattttggccaaaaaccggtaaacttgaggtgatccactgtaaatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatctcagaatcttcagtgaaggtggacttgactacttgggtaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtgttaatgggagctgttgagggataccgtattgcaggtggacctcttggtgaggtcgtcgacccactctaccctggtggaagctttgacccattaggtcttgctgatgatccagaagcatttgctgagctcaaagtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattagagaaccttgctgatcaccttgcagacccagtcaacaacaacgcatggtcctacgccacaaactttgtccccggaaaataaaaatcttagaacattctctagtttctggtcgtttgatgaccgtgtaaagatgtagtgtgctacctgacaatataatgaaatttttgtttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13974" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6493" g_stop="5778" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E616967" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6493" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGAC-TACGG-GTGGGACACCGCTGG-ACTTT-CAGCAGATCC-AGAAACCTTT-GCCAAGAACC-GTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCA-AATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>GCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTTACGGTGGGGAATACCGTTGGAACTTTCCAGCAAACCCTTGAAAATTTTGGCCAAAAACCGGTAAACTTGAGGTGATCCACTGTAAATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGAATCTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTAATGGGAGCTGTTGAGGGATACCGTATTGCAGGTGGACCTCTTGGTGAGGTCGTCGACCCACTCTACCCTGGTGGAAGCTTTGACCCATTAGGTCTTGCTGATGATCCAGAAGCATTTGCTGAGCTCAAAGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTAGAGAACCTTGCTGATCACCTTGCAGACCCAGTCAACAACAACGCATGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAGAACATTCTCTAGTTTCTGGTCGTTTGATGACCGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734960" ref_strand="+" ref_description="SGN-E734960 [LB14AC03]">
      <seq>ctgttgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6709" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6409" g_stop="5778" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="686"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734960" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6409" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>CTGTTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285118" ref_strand="+" ref_description="SGN-E285118 [cLER-20-M11]">
      <seq>acgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6700" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6400" g_stop="5778" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285118" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6400" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>ACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732348" ref_strand="+" ref_description="SGN-E732348 [LB01DG02]">
      <seq>ccgtatattttgccaagaaccgtgaacttgaggtgatccactgcatatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6659" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6367" g_stop="5778" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="643"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732348" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6367" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>CCGTATATTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCATATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731997" ref_strand="+" ref_description="SGN-E731997 [LB01AA06]">
      <seq>gattcttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6665" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6365" g_stop="5778" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="630" polyA_stop="641"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731997" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6365" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>GATTCTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540819" ref_strand="+" ref_description="SGN-E540819 [TUS-61-E16]">
      <seq>gtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6635" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6335" g_stop="5778" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="610"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E540819" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6335" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>GTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614171" ref_strand="+" ref_description="SGN-E614171 [63954]">
      <seq>gtcaagtttggtgaggctgtgtggttcaaggctggatctcagatcttcagtgaaggtggacttgactacttgggtaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtgttaatgggagctgttgagggataccgtattgcaggtggacctcttggtgaggtcgtcgacccactctaccctggtggaagctttgacccattaggtcttgctgatgatccagaagcatttgctgagctcaaagtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattagagaaccttgctgatcaccttgcagacccagtcaacaacaacgcatggtcctacgccacaaactttgtccccggaaaataaaaatcttagaacattctctagtttctggtcgtttgatgaccgtgtaaagatgtagtgtgctacctgacaatataatgaaatttggtttgtgtttgacacaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6563" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6263" g_stop="5778" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E614171" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6263" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>GTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTAATGGGAGCTGTTGAGGGATACCGTATTGCAGGTGGACCTCTTGGTGAGGTCGTCGACCCACTCTACCCTGGTGGAAGCTTTGACCCATTAGGTCTTGCTGATGATCCAGAAGCATTTGCTGAGCTCAAAGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTAGAGAACCTTGCTGATCACCTTGCAGACCCAGTCAACAACAACGCATGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAGAACATTCTCTAGTTTCTGGTCGTTTGATGACCGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292783" ref_strand="+" ref_description="SGN-E292783 [cLET-11-P16]">
      <seq>tcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6538" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6238" g_stop="5778" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E292783" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6238" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>TCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611222" ref_strand="+" ref_description="SGN-E611222 [60971]">
      <seq>tgggtaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtgttaatgggagctgttgagggataccgtattgcaggtggacctcttggtgaggtcgtcgacccactctaccctggtggaagctttgacccattaggtcttgctgatgatccagaagcatttgctgagctcaaagtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattagagaaccttgctgatcaccttgcagacccagtcaacaacaacgcatggtcctacgccacaaactttgtccccggaaaataaaaatcttagaacattctctagtttctggtcgtttgatgaccgtgtaaagatgtagtgtgctacctgacaatataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6493" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6193" g_stop="5778" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E611222" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6193" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>TGGGTAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTAATGGGAGCTGTTGAGGGATACCGTATTGCAGGTGGACCTCTTGGTGAGGTCGTCGACCCACTCTACCCTGGTGGAAGCTTTGACCCATTAGGTCTTGCTGATGATCCAGAAGCATTTGCTGAGCTCAAAGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTAGAGAACCTTGCTGATCACCTTGCAGACCCAGTCAACAACAACGCATGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAGAACATTCTCTAGTTTCTGGTCGTTTGATGACCGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229231" ref_strand="+" ref_description="SGN-E229231 [cLEL-29-D22](-)">
      <seq>ctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacctgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6450" stop="5464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6150" g_stop="5778" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E229231" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6150" e_stop="5778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</genome_strand>
        <mrna_strand>CTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACCTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613186" ref_strand="+" ref_description="SGN-E613186 [62957]">
      <seq>ctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaatcgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggccggatctcagatcttcagtgaaggtggacttgattacttgggtaatccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgtattgccggtggacctcttggtgaggtcgtcgacccactctaccctggtggaagctttgacccattaggtcttgctgatgatccagaggcatttgctgagctcaaagtaaaggagattaagaacggtagacttgctatgttctctatgtttggattcttcgttcaagccattgttaccggaaagggtccattggagaaccttgctgatcaccttgcagacccagtcaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataagaatcttaaacattctcaaggtttctggtcgtttgatgaccgttgtaaagctgtagtgtgctacctgacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6709" stop="5462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6409" g_stop="5791" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E613186" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6409" e_stop="5791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAA-GTTTCTGATCATTTGTTGACC</genome_strand>
        <mrna_strand>CTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAATCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCTCAGATCTTCAGTGAAGGTGGACTTGATTACTTGGGTAATCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGTATTGCCGGTGGACCTCTTGGTGAGGTCGTCGACCCACTCTACCCTGGTGGAAGCTTTGACCCATTAGGTCTTGCTGATGATCCAGAGGCATTTGCTGAGCTCAAAGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTCAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAGAATCTT-AAACATTCTCAAGGTTTCTGGTCGTTTGATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728151" ref_strand="+" ref_description="SGN-E728151 [LA16DE04]">
      <seq>gccaacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtanaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaatcttaaaacattctcaagtttctgatcatttgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6988" stop="5492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6688" g_stop="5792" g_length="897"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="896" r_length="896" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728151" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6688" e_stop="5792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGAC</genome_strand>
        <mrna_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTANAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAAT-AAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342962" ref_strand="+" ref_description="SGN-E342962 [cTOF-11-B18]">
      <seq>tggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgtnctcaagtctctggtcgtttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6785" stop="5493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6485" g_stop="5793" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342962" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6485" e_stop="5793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGA</genome_strand>
        <mrna_strand>TGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAAC-ACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTNCTCAAGTCTCTGGTCGTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740797" ref_strand="+" ref_description="SGN-E740797 [LC22DG04]">
      <seq>caacaatatctcataccttcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggnaaataaaaatcttaaaacattctcaagtttctgatcatttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="5794" g_length="887"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="887" r_length="887" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E740797" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="5794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTG</genome_strand>
        <mrna_strand>CAACAATATCTCATACCTTCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGNAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730418" ref_strand="+" ref_description="SGN-E730418 [LA24AC09]">
      <seq>caatcaagggaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6976" stop="5496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6686" g_stop="5796" g_length="891"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="890" r_length="890" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730418" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6686" e_stop="5796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGT</genome_strand>
        <mrna_strand>CAATCAAGGGAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAAC-ACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727531" ref_strand="+" ref_description="SGN-E727531 [LA14DH07]">
      <seq>caacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagtttctgatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="5799" g_length="882"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="882" r_length="882" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="5799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATT</genome_strand>
        <mrna_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726709" ref_strand="+" ref_description="SGN-E726709 [LA12CD08]">
      <seq>gccaacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaaataaaatcttaaaacattctcaagtttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6988" stop="5505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6688" g_stop="5805" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="884" r_length="884" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726709" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6688" e_stop="5805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTG</genome_strand>
        <mrna_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAAATAAAATCTTAAAACATTCTCAAGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737119" ref_strand="+" ref_description="SGN-E737119 [LC08CC01]">
      <seq>ccaacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaataaaaaatcttaaacattctcaagtttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6987" stop="5505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6687" g_stop="5805" g_length="883"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="882" r_length="882" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E737119" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6687" e_stop="5805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTG</genome_strand>
        <mrna_strand>CCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAATAAAAAATCTT-AAACATTCTCAAGTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294876" ref_strand="+" ref_description="SGN-E294876 [cLET-17-E23](-)">
      <seq>tgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacaacgcctggtcttacgccacaaactttgtccccggaaaataaaaatcttaaaacattctcaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6634" stop="5508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6334" g_stop="5808" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294876" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6334" e_stop="5808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTT</genome_strand>
        <mrna_strand>TGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCTTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294875" ref_strand="+" ref_description="SGN-E294875 [cLET-17-E23]">
      <seq>aaacttgagaatgttttaagatttttattttccggggacaaagtttgtggcgtaagaccaggcgttgttgtttactgggtctgcaaggtgatcagcaaggttctccaatggtccctttccagtaacaatggcttgaacaaagaatccaaacatagagaacatagcaagtctaccgttcttaatctcctttaccttgagctcagcaaatgcctcagggtcttcagcaaggcctaatgggtcgaagctgccacctgggtagagtgggtctacaacctcaccaagaggtccaccagcaatacggtaaccttcaacggctcccatgagtacaacttggcaagcccagatggccaagatgctctgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccctcactgaagatttgagatccagccttgaaccagacagcctcaccaaacttgacaccattacgggccaagagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="5508" stop="6634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5808" g_stop="6334" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E294875" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5808" e_stop="6334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAGGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCTACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGATCCAGCCTTGAACCAGACAGCCTCACCAAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCA</genome_strand>
        <mrna_strand>AAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAAGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCTGGGTAGAGTGGGTCTACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGATCCAGCCTTGAACCAGACAGCCTCACCAAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730041" ref_strand="+" ref_description="SGN-E730041 [LA22DE05]">
      <seq>ccaacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaagccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatcacccttgcaaacccagtaaacaacaacgcctggtcctacgccacaaactttgtccccggaaaataaaaaatctaaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6987" stop="5518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6687" g_stop="5818" g_length="870"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="871" r_length="871" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730041" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6687" e_stop="5818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCA-CCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACAT</genome_strand>
        <mrna_strand>CCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAAGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCCTTGCAAACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAAATCTAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291409" ref_strand="+" ref_description="SGN-E291409 [cLET-2-L20]">
      <seq>tggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctattggtgaggttgtagacccactctacccaggtggcagcttctacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggaaattaaaaacggtagacttgctatgttctctatgattggattctttgctcaagccattgttactggaaagggaccattggagaaccttgctgatcaccttgcagacccagtaaacaacagcgcctggtcttacgccacagactttgtccccggaaaataaaaatcttaaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6507" stop="5518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6207" g_stop="5818" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E291409" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6207" e_stop="5818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACAT</genome_strand>
        <mrna_strand>TGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTATTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCTACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAAATTAAAAACGGTAGACTTGCTATGTTCTCTATGATTGGATTCTTTGCTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAGCGCCTGGTCTTACGCCACAGACTTTGTCCCCGGAAAATAAAAATCTTAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728354" ref_strand="+" ref_description="SGN-E728354 [LA17CC04]">
      <seq>tctcatacattaaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggaatctttgttcaagccattgttactggaaagggaccattggagaccttgctgatcaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6972" stop="5590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6672" g_stop="5890" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728354" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6672" e_stop="5890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGC</genome_strand>
        <mrna_strand>TCTCATACATTAAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGAATCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAG-ACCTTGCTGATCACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339848" ref_strand="+" ref_description="SGN-E339848 [cTOF-3-K1]">
      <seq>aaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggcctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactgggaagggaccattggagaacctggctgatcaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6960" stop="5590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6660" g_stop="5890" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E339848" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6660" e_stop="5890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGC</genome_strand>
        <mrna_strand>AAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGG-CCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGGAAGGGACCATTGGAGAACCTGGCTGATCACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727089" ref_strand="+" ref_description="SGN-E727089 [LA13CG10]">
      <seq>cctttaagatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattctttgttcaagccattgttactggaaagggaccattggagaaccttgctgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6976" stop="5596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6681" g_stop="5896" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="786" r_length="786" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727089" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6681" e_stop="5896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCA</genome_strand>
        <mrna_strand>CCTTTAAGATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457449" ref_strand="+" ref_description="SGN-E457449 [cPRO-2-B14]">
      <seq>caaacacttacttttctcttaatataaaataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatctcagatcttcagtgaaggtggacttgactacttgggtaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtgttaatgggagctgttgagggataccgtattgcaggtggacctcttggtgaggtcgtcgacccactctaccctggtggaagctttgacccattangtcttgctgatgatccagaagcatttgctgagctcaaagtaaaggagattaagaacggtagacttgctatgntctctatgtttggattctttgttcaagccattgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11689" stop="5628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6661" g_stop="5928" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E457449" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6661" e_stop="5928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTACATTTCTCTT--GATA---TAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACT</genome_strand>
        <mrna_strand>CAAACACTTACTTTTCTCTTAATATAAAATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTAATGGGAGCTGTTGAGGGATACCGTATTGCAGGTGGACCTCTTGGTGAGGTCGTCGACCCACTCTACCCTGGTGGAAGCTTTGACCCATTANGTCTTGCTGATGATCCAGAAGCATTTGCTGAGCTCAAAGTAAAGGAGATTAAGAACGGTAGACTTGCTATGNTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739056" ref_strand="+" ref_description="SGN-E739056 [LC15DH09]">
      <seq>cattatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggattccttgttcaagccattgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6977" stop="5630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6677" g_stop="5930" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E739056" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6677" e_stop="5930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTA</genome_strand>
        <mrna_strand>CATTATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCCTTGTTCAAGCCATTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728392" ref_strand="+" ref_description="SGN-E728392 [LA17CG02]">
      <seq>gccatcttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattangccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttggaattctttgttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6988" stop="5641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6688" g_stop="5940" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728392" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6688" e_stop="5940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGG-ATTCTTTGTTCAA</genome_strand>
        <mrna_strand>GCCATCTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTANGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGAATTCTTTGTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466509" ref_strand="+" ref_description="SGN-E466509 [cPRO-24-N23]">
      <seq>ccaacttcaacaataattcaaaccctcaaacactttacttttctcttcagataaaaccatggcagctgcaacaatggctctttcttccccttcttttgccggacaggcagtgaagctttcaccatctgcctcagaaattactggaaatggaagaatcactatgagaaaggctgtcgccaagtctgcctcgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgacaggtgaattccctggtgactacgggtgggatactgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgtaacggtgtcaattttggcgaagctgtgtggttcaaggctggatcacaaatcttcagcgagggtggacttgactacttgggcaacccaagtttggtccatgcacaaagtatcttggccatctgggcttgtcaaagttgtgttgatgggagccgttgaaggttaccgcattgctggtgggcctcttgggtgaagttgtcgacccactctacccctggtggcagttttgacccattaggtcttgctgatgatccagaagcatttgctgagctcaaagttaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6987" stop="5644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6687" g_stop="5944" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E466509" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6687" e_stop="5944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAACAATATCTCATACCATCAAACAC-TTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTG-CCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTT-GGTGAGGTTGTAGACCCACTCTACCCC-GGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGT</genome_strand>
        <mrna_strand>CCAACTTCAACAATAATTCAAACCCTCAAACACTTTACTTTTCTCTTCAGATAAA-ACCATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCCGGACAGGCAGTGAAGCTTTCACCATCTGCCTCAGAAATTACTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCTCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACAGGTGAATTCCCTGGTGACTACGGGTGGGATACTGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGTAACGGTGTCAATTTTGGCGAAGCTGTGTGGTTCAAGGCTGGATCACAAATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGTTTGGTCCATGCACAAAGTATCTTGGCCATCTGGGCTTGTCAAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGGCCTCTTGGGTGAAGTTGTCGACCCACTCTACCCCTGGTGGCAGTTTTGACCCATTAGGTCTTGCTGATGATCCAGAAGCATTTGCTGAGCTCAAAGTTAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728110" ref_strand="+" ref_description="SGN-E728110 [LA16CH12]">
      <seq>gccattttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaaggagattaagaacggtagacttgctatgttctctatgtttggattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6988" stop="5647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6688" g_stop="5947" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728110" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6688" e_stop="5947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGT-AAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTT</genome_strand>
        <mrna_strand>GCCATTTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340113" ref_strand="+" ref_description="SGN-E340113 [cTOF-3-L12]">
      <seq>aatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctngagcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctatgtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6976" stop="5653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6676" g_stop="5953" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340113" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6676" e_stop="5953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGG</genome_strand>
        <mrna_strand>AATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTNGAGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730749" ref_strand="+" ref_description="SGN-E730749 [LA25AC11]">
      <seq>ccttcacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcaaccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccacaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccccatcgctggtggacctcttggcgaggttgtagacccactctaccccggtggaaacttcgacccattacgccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggacattaaaaaaggcagacttgctatgttctctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6983" stop="5658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6684" g_stop="5958" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730749" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6684" e_stop="5958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATG</genome_strand>
        <mrna_strand>CCTTC-ACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAACCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCACAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCCCATCGCTGGTGGACCTCTTGGCGAGGTTGTAGACCCACTCTACCCCGGTGGAAACTTCGACCCATTACGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGACATTAAAAAAGGCAGACTTGCTATGTTCTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342487" ref_strand="+" ref_description="SGN-E342487 [cTOF-8-H17]">
      <seq>tcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6970" stop="5659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6670" g_stop="5959" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342487" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6670" e_stop="5959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTAT</genome_strand>
        <mrna_strand>TCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728369" ref_strand="+" ref_description="SGN-E728369 [LA17CD09]">
      <seq>aaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaacctgaggcatttgctgagctcangggtaaggagattaagaaacggagacttgctatgttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6960" stop="5661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6660" g_stop="5961" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728369" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6660" e_stop="5961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCT</genome_strand>
        <mrna_strand>AAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGAACCTGAGGCATTTGCTGAGCTCANGGGTAAGGAGATTAAGAAACGGAGACTTGCTATGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371437" ref_strand="+" ref_description="SGN-E371437 [TUS-29-H14]">
      <seq>aacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaaggagattaagaacggtagacttgctatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6979" stop="5664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6679" g_stop="5964" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E371437" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6679" e_stop="5964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTC</genome_strand>
        <mrna_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728809" ref_strand="+" ref_description="SGN-E728809 [LA19AA11]">
      <seq>caacaatanctcataccatccaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagctcaaggtaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="5992" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728809" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="5992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCAT-CAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGA</genome_strand>
        <mrna_strand>CAACAATANCTCATACCATCCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340901" ref_strand="+" ref_description="SGN-E340901 [cTOF-5-G21]">
      <seq>aacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccctngagcatttgctgagctcaaggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6979" stop="5696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6679" g_stop="5996" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340901" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6679" e_stop="5996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAA</genome_strand>
        <mrna_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTNGAGCATTTGCTGAGCTCAAGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344904" ref_strand="+" ref_description="SGN-E344904 [cTOF-21-B12]">
      <seq>caacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaagttgtagacccactctacccaggtggcagcttcgacccattangccttgctgaagaccctgangcatttgctgagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6986" stop="5702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6686" g_stop="6002" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E344904" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6686" e_stop="6002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCA</genome_strand>
        <mrna_strand>CAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCTGANGCATTTGCTGAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731241" ref_strand="+" ref_description="SGN-E731241 [LA26CC04]">
      <seq>cctttcttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaagccttgctgaagaccctgangcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6983" stop="5704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6687" g_stop="6004" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="685" r_length="684" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731241" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6687" e_stop="6004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>CTTTCTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAAGCCTTGCTGAAGACCCTGANGCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345297" ref_strand="+" ref_description="SGN-E345297 [cTOF-13-F20]">
      <seq>ttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctacccaggtggcagcttcgacccattangccttgctgaagaccctngagcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6982" stop="5704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6682" g_stop="6004" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345297" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6682" e_stop="6004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>TTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCTNGAGCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728685" ref_strand="+" ref_description="SGN-E728685 [LA18CE06]">
      <seq>ttcaacaatanctcataccagcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaagaccctgaggcatttgctgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6982" stop="5705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6682" g_stop="6005" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728685" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6682" e_stop="6005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGC</genome_strand>
        <mrna_strand>TTCAACAATANCTCATACCAGCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466857" ref_strand="+" ref_description="SGN-E466857 [cPRO-26-E22]">
      <seq>gccaacttcaacaatatttcaattttcataccatcaaacaattactttgttctcttgatataagcaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatctctatgagaaaggccgtcgccaagtctacctcatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagttacttgaccggtgaattccctggtgactacgggtgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaggctgtgtggttcaaggctggatcccaaatcttcagcgagggtggacttgattacttaggaaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattangccttgctgatgatccagaagcatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6988" stop="3267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6687" g_stop="6008" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="690" r_length="680" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E466857" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6687" e_stop="6008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAACAATATCTCATACCATCAAACACTTACATT--TCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTG</genome_strand>
        <mrna_strand>ACAA-TATTTCAAT-TTTCATACCATCAAACAATTACTTTGTTCTCTTGATATAAGCACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCTCTATGAGAAAGGCCGTCGCCAAGTCTACCTCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGTTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAAATCTTCAGCGAGGGTGGACTTGATTACTTAGGAAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTANGCCTTGCTGATGATCCAGAAGCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459467" ref_strand="+" ref_description="SGN-E459467 [cPRO-27-P10]">
      <seq>atcaaacacttacttttctcttaatataaaataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatctcagatcttcagtgaaggtggacttgactacttgggtaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtgttaatgggagctgttgagggataccgtattgcaggtggacctcttggntgaggtcgtcgacccactctaccctggtggaagctttganccattangtcttgctgatgatccagaagcatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11689" stop="3267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6663" g_stop="6008" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E459467" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6663" e_stop="6008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACTTACATTTCTCTTGATAT-AAA--CAC-C-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGG-TGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTG</genome_strand>
        <mrna_strand>ATCAAACACTTACTTTTCTCTTAATATAAAATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTAATGGGAGCTGTTGAGGGATACCGTATTGCAGGTGGACCTCTTGGNTGAGGTCGTCGACCCACTCTACCCTGGTGGAAGCTTTGANCCATTANGTCTTGCTGATGATCCAGAAGCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465818" ref_strand="+" ref_description="SGN-E465818 [cPRO-22-I2]">
      <seq>atcaaacacttacttttctcttaatataaaataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatctcagatcttcagtgaaggtggacttgactacttgggtaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtgttaatgggagctgttgagggataccgtattgcaggtggacctcttggtgaggtcgtcgacccactctaccctggtggaagctttgacccattangtcttgctgatgatccagaagcatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11689" stop="3267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6663" g_stop="6008" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E465818" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6663" e_stop="6008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACTTACATTTCTCTTGATAT-AAA--CAC-C-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTG</genome_strand>
        <mrna_strand>ATCAAACACTTACTTTTCTCTTAATATAAAATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTAATGGGAGCTGTTGAGGGATACCGTATTGCAGGTGGACCTCTTGGTGAGGTCGTCGACCCACTCTACCCTGGTGGAAGCTTTGACCCATTANGTCTTGCTGATGATCCAGAAGCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739995" ref_strand="+" ref_description="SGN-E739995 [LC19CF08]">
      <seq>acaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttttggtgaggctgtctggttcatggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgtttaaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcgacccattaggccttgctgaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6978" stop="5723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6678" g_stop="6023" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E739995" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6678" e_stop="6023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAG-TTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCG-TTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACC</genome_strand>
        <mrna_strand>ACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTTGGTGAGGCTGTCTGGTTCATGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTTAAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731146" ref_strand="+" ref_description="SGN-E731146 [LA26BB04]">
      <seq>caatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtagacccactctaccccggtggaagcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6977" stop="5747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6677" g_stop="6047" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6677" e_stop="6047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCG</genome_strand>
        <mrna_strand>CAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729130" ref_strand="+" ref_description="SGN-E729130 [LA20AC11]">
      <seq>cttcaacaatanctcataccancaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6983" stop="5779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6683" g_stop="6079" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6683" e_stop="6079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGT</genome_strand>
        <mrna_strand>CTTCAACAATANCTCATACCANCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292362" ref_strand="+" ref_description="SGN-E292362 [cLET-1-M2]">
      <seq>aacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaacggaaggatcactatgagaaaggctgtcgcaaaggcagctccatctaacagcccatggtatggccctgaccaagttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgcgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgctgaaggttaccggattgctggtggacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6979" stop="5788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6679" g_stop="6088" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E292362" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6679" e_stop="6088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCT</genome_strand>
        <mrna_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAACGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGGCAGCTCCATCTAACAGCCCATGGTATGGCCCTGACCAAGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGCGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGCTGAAGGTTACCGGATTGCTGGTGGACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284818" ref_strand="+" ref_description="SGN-E284818 [cLER-19-G13]">
      <seq>aatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagccgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6976" stop="5815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6676" g_stop="6115" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284818" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6676" e_stop="6115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGA</genome_strand>
        <mrna_strand>AATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574664" ref_strand="+" ref_description="SGN-E574664 [34168]">
      <seq>aaacacttacttttctcttaatataaaataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccgtctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaagtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatctcagatcttcagtgaaggtggacttgactacttgggtaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtgttaatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21216" stop="5821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6660" g_stop="6120" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E574664" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6660" e_stop="6120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACATTTCTCTTGATAT--AA-ACAC-C-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</genome_strand>
        <mrna_strand>AAACACTTACTTTTCTCTTAATATAAAATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAAGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTAATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299036" ref_strand="+" ref_description="SGN-E299036 [cLET-42-J10]">
      <seq>tgatataaacaccatggcagctgctactatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6942" stop="5820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6642" g_stop="6120" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E299036" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6642" e_stop="6120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</genome_strand>
        <mrna_strand>TGATATAAACACCATGGCAGCTGCTACTATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294811" ref_strand="+" ref_description="SGN-E294811 [cLET-17-D14]">
      <seq>caccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6933" stop="5820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6633" g_stop="6120" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294811" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6633" e_stop="6120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</genome_strand>
        <mrna_strand>CACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287216" ref_strand="+" ref_description="SGN-E287216 [cLES-6-L10]">
      <seq>aacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6979" stop="5821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6679" g_stop="6121" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E287216" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6679" e_stop="6121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGC</genome_strand>
        <mrna_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284023" ref_strand="+" ref_description="SGN-E284023 [cLER-13-E9]">
      <seq>tcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6981" stop="5822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6681" g_stop="6122" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284023" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6681" e_stop="6122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAG</genome_strand>
        <mrna_strand>TCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281653" ref_strand="+" ref_description="SGN-E281653 [cLER-14-F5]">
      <seq>ctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtactcatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6971" stop="5822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6671" g_stop="6122" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E281653" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6671" e_stop="6122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAG</genome_strand>
        <mrna_strand>CTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725656" ref_strand="+" ref_description="SGN-E725656 [LA05AA12]">
      <seq>acaaaaaaatataaaaaaaaaacactgggggggggctggatatcaacatcatggcagttggtggaatgatctatttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctgagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttgntccatgcacagagcatcttgggcatcntggcttgccaagtgtactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6910" stop="5828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6641" g_stop="6128" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="552" r_length="514" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725656" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6641" e_stop="6128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATAAACACCATGGCAGCTGCTACAATG-GCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCA</genome_strand>
        <mrna_strand>GATATCAACATCATGGCAGTTGGTGGAATGATCTATTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTGAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGNTCCATGCACAGAGCATCTTGGGCATCNTGGCTTGCCAAG-TGTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725688" ref_strand="+" ref_description="SGN-E725688 [LA05BD02]">
      <seq>caacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaatggtgaattccctggtgactacgggtgggacaccgctggactttcagcagatccagaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaatcttcagtgagggtggacttgactacttgggcatcccagcttggtcatgccagagcatcttgccatctggcttgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="6138" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725688" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="6138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAA</genome_strand>
        <mrna_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTC-AATCTTCAGTGAGGGTGGACTTGACTACTTGGGCATCCC-AGCTTGGT-CATGC-CAGAGCATCTT-GCCATCT-GGCTTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478550" ref_strand="+" ref_description="SGN-E478550 [cSTD-5-D16]">
      <seq>atctcataccatcaaacacttacttttctcttaatataaaataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatctcagatcttcagtgaaggtggacttgactacttgggtaacccaagcttggtccatgcacagagcatcttggccatctgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6973" stop="3402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6673" g_stop="6143" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E478550" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6673" e_stop="6143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATACCATCAAACACTTACATTTCTCTTGATATAAA-----CACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTT</genome_strand>
        <mrna_strand>ATCTCATACCATCAAACACTTACTTTTCTCTTAATATAAAATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467148" ref_strand="+" ref_description="SGN-E467148 [cSTB-42-O3]">
      <seq>atcaaacacttacttttctcttaatataaaataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatctcagatcttcagtgaaggtggacttgactacttgggtaacccaagcttggtccatgcacagagcatcttggccatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11689" stop="5845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6663" g_stop="6145" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E467148" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6663" e_stop="6145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACTTACATTTCTCTTGATAT-AAA--CAC-C-ATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGC</genome_strand>
        <mrna_strand>ATCAAACACTTACTTTTCTCTTAATATAAAATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286397" ref_strand="+" ref_description="SGN-E286397 [cLES-11-P3]">
      <seq>accatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6966" stop="5847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6666" g_stop="6147" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E286397" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6666" e_stop="6147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGG</genome_strand>
        <mrna_strand>ACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203292" ref_strand="+" ref_description="SGN-E203292 [cLEB-3-D21]">
      <seq>gcacgagcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccttgacctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaaccccaacttggtccatgcacagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6687" g_stop="6161" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E203292" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6687" e_stop="6161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCA</genome_strand>
        <mrna_strand>GCACGAGCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCTTGACCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCCAACTTGGTCCATGCACAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278057" ref_strand="+" ref_description="SGN-E278057 [cLER-4-I3]">
      <seq>tttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6949" stop="5861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6649" g_stop="6161" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278057" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6649" e_stop="6161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCA</genome_strand>
        <mrna_strand>TTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294064" ref_strand="+" ref_description="SGN-E294064 [cLET-13-K5]">
      <seq>aacttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactataggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggagctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcanatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6985" stop="5867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6685" g_stop="6167" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294064" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6685" e_stop="6167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCAC</genome_strand>
        <mrna_strand>AACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATAGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGAGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCANATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297500" ref_strand="+" ref_description="SGN-E297500 [cLET-28-I6]">
      <seq>aacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6979" stop="5879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6679" g_stop="6179" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E297500" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6679" e_stop="6179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCT</genome_strand>
        <mrna_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291716" ref_strand="+" ref_description="SGN-E291716 [cLET-6-O16]">
      <seq>ctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactacttgggcaacccaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6971" stop="5879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6671" g_stop="6179" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E291716" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6671" e_stop="6179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCT</genome_strand>
        <mrna_strand>CTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285178" ref_strand="+" ref_description="SGN-E285178 [cLER-20-B21]">
      <seq>acaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaatcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcaacccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactattggtgggacaccgctggacttttagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgacttccctgagctcttggcccgaaatggtgtgaagtttcgtgaggctgtctggttcaaggctggatctcaaatcttcattgagggtggacttgactacttgggcaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6978" stop="5884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6678" g_stop="6184" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285178" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6678" e_stop="6184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCC</genome_strand>
        <mrna_strand>ACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAATCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAACCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATTGGTGGGACACCGCTGGACTTTTAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGACTTCCCTGAGCTCTTGGCCCGAAATGGTGTGAAGTTTCGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCATTGAGGGTGGACTTGACTACTTGGGCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726104" ref_strand="+" ref_description="SGN-E726104 [LA10BD02]">
      <seq>caacaatatctcataccatcaaacacttacatttttcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactcttaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagccccatctagcagcccatggtatggccctgaccgtgtaaagtacttgggtccattctctggagagtcccctagctacttgaatggggaattacctggtgactacgggtgggacaccggtggactttcatcagatccagaaacctttgccaagaaccgtgaactctaggtgatccactgcagatggactatgcttgctgctcttgcatgtgtcttccctgagctcttggcccgtaatggtgtcaagaatggtgaggctgtctggttcaaggctggatctcaaatcttcagtgagggtggacttgactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6980" stop="5894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6680" g_stop="6194" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726104" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6680" e_stop="6194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACT</genome_strand>
        <mrna_strand>CAACAATATCTCATACCATCAAACACTTACATTTTTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTAAAGTACTTGGGTCCATTCTCTGGAGAGTCCCCTAGCTACTTGAATGGGGAATTACCTGGTGACTACGGGTGGGACACCGGTGGACTTTCATCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCTAGGTGATCCACTGCAGATGGACTATGCTTGCTGCTCTTGCATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGAATGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281984" ref_strand="+" ref_description="SGN-E281984 [cLES-2-K8]">
      <seq>ttcaacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggttcaaggctggatctcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6982" stop="5920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6682" g_stop="6220" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E281984" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6682" e_stop="6220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAAT</genome_strand>
        <mrna_strand>TTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289323" ref_strand="+" ref_description="SGN-E289323 [cLES-18-D2]">
      <seq>tcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcggaaagtcagctccatctagcaacccatggtatggccctgaccgcgttaagtacttgggtccattctctggtgagtaccctagctacttgaccggagaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtctggatcaaggctggatctcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6970" stop="5920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6670" g_stop="6220" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289323" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6670" e_stop="6220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAAT</genome_strand>
        <mrna_strand>TCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGGAAAGTCAGCTCCATCTAGCAACCCATGGTATGGCCCTGACCGCGTTAAGTACTTGGGTCCATTCTCTGGTGAGTACCCTAGCTACTTGACCGGAGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGATCAAGGCTGGATCTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293931" ref_strand="+" ref_description="SGN-E293931 [cLET-13-K2]">
      <seq>aacaatatctcataccatcaaacacttacatatctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggagagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgcgaactcgaggtgatccactgcacatgggctatgcttggtgctctnggatgtgtcttccctgagctcttggcccgtaatgatgtcaagtttggcgaggctgtctggttcaaggctggatctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6979" stop="5921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6679" g_stop="6221" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293931" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6679" e_stop="6221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAA</genome_strand>
        <mrna_strand>AACAATATCTCATACCATCAAACACTTACATATCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGAGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGCGAACTCGAGGTGATCCACTGCACATGGGCTATGCTTGGTGCTCTNGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGATGTCAAGTTTGGCGAGGCTGTCTGGTTCAAGGCTGGATCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278629" ref_strand="+" ref_description="SGN-E278629 [cLER-10-L22]">
      <seq>aacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6979" stop="5955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6679" g_stop="6255" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278629" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6679" e_stop="6255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTT</genome_strand>
        <mrna_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278088" ref_strand="+" ref_description="SGN-E278088 [cLER-4-G10]">
      <seq>aaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6960" stop="5955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6660" g_stop="6255" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278088" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6660" e_stop="6255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTT</genome_strand>
        <mrna_strand>AAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280598" ref_strand="+" ref_description="SGN-E280598 [cLER-1-H3]">
      <seq>aacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6979" stop="5978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6679" g_stop="6278" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280598" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6679" e_stop="6278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</genome_strand>
        <mrna_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283827" ref_strand="+" ref_description="SGN-E283827 [cLES-1-H20]">
      <seq>tttgctggacaagcagcgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtcagctccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtcccctagctacttgaccggtgaattccctggtgactatgggtgggacaccgctggactttcagctgaccctgagacctttgccaagaaccgggaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6893" stop="5978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6593" g_stop="6278" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283827" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6593" e_stop="6278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</genome_strand>
        <mrna_strand>TTTGCTGGACAAGCAGCGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCTCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGGGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280860" ref_strand="+" ref_description="SGN-E280860 [cLEL-6-P8](-)">
      <seq>tagtcaccagggaattcaccggtcaagtagctaggggactcaccagagaatggacccaagtacttaacacggtcagggccataccatgggctgctagatggagctgactttgcgacagcctttctcatagtgatccttccatttcctgtgatttctgaggcagatggtgagagtttcactgcttgtccagcaaaagaaggggaagaaagagccattgtagcagctcccatggtgtttatatcaagagaaatgtaagtgtttgatggtatctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6100" stop="6968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6400" g_stop="6675" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E280860" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6400" e_stop="6675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCACCAGGGAATTCACCATTCAAGTAGCTAGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTTGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCTGTGATTTCTGAGGCAGATGGTAAGAGTTTCACTGCTTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGGTATGAGATAT</genome_strand>
        <mrna_strand>TAGTCACCAGGGAATTCACCGGTCAAGTAGCTAGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGAGCTGACTTTGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCTGTGATTTCTGAGGCAGATGGTGAGAGTTTCACTGCTTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTCCCATGGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGGTATCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280838" ref_strand="+" ref_description="SGN-E280838 [cLEL-6-H20](-)">
      <seq>gggaattctccggtcaagtagctaggggactcaccagagaatggacccaagtacttaacacggtcagggccataccatgggctgctagatggagctgactttgcgacagcctttctcatagtgatccttccatttcctgtgatttctgaggcagatggtgagagtttcactgcttgtccagcaaaagaaggggaagaaatgtccattgtagcagctgccatggtccttatatcaagagaaatgtaagtgtaagatggtatgagatattctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6109" stop="6980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6409" g_stop="6683" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E280838" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6409" e_stop="6683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATTCACCATTCAAGTAGCTAGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTTGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCTGTGATTTCTGAGGCAGATGGTAAGAGTTTCACTGCTTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGGTATGAGATATTGTTGAAG</genome_strand>
        <mrna_strand>GGGAATTCTCCGGTCAAGTAGCTAGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGAGCTGACTTTGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCTGTGATTTCTGAGGCAGATGGTGAGAGTTTCACTGCTTGTCCAGCAAAAGAAGGGGAAGAAATGTCCATTGTAGCAGCTGCCATGGTCCTTATATCAAGAGAAATGTAAGTGTAAGATGGTATGAGATATTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286197" ref_strand="+" ref_description="SGN-E286197 [cLES-11-K3]">
      <seq>aacaatatctcataccatcaaacacttacatttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcacaggaaatggaaggatcactatgagaaaggctgtcgcaaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="6979" stop="6204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6679" g_stop="6504" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E286197" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6679" e_stop="6504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCA</genome_strand>
        <mrna_strand>AACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225332" ref_strand="+" ref_description="SGN-E225332 [cLEL-17-B4](-)">
      <seq>tatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatggccttgtaaagttgtaattgtgagtttactagacaatataatggatttttcttatattccaattatggtgtagtctataattccattttccaaatggatccctgaaatactgcaagattcatatcaaaagaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="8670" stop="7775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8370" g_stop="8071" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E225332" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8370" e_stop="8071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAACTATGGTGTAGTATATAATTCCATTTTCCAATTGCATGAATGAAATACTGCAAGATTCATATCAAAGGGGGAAAAAAGATGAC</genome_strand>
        <mrna_strand>TATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAATTATGGTGTAGTCTATAATTCCATTTTCCAAATGGATCCCTGAAATACTGCAAGATTCATATCAAAAGAAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736696" ref_strand="+" ref_description="SGN-E736696 [LC06DC06]">
      <seq>gccaagaaccgtgaacttgaggtgatccactgcagatggcctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatggccttgtaaagttgtaattgtgagtttactagacaatataatggatttttcttatattccaactatggtgtagtatataattccattttccaattgcatgaatgaaatactgcaagattcatatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9056" stop="7788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8756" g_stop="8620" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8619" i_stop="8452" i_length="168">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8451" g_stop="8081" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="508" r_length="371" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E736696" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8756" e_stop="8620"/>
          <exon e_start="8451" e_stop="8081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAACTATGGTGTAGTATATAATTCCATTTTCCAATTGCATGAATGAAATACTGCAAGATTCATATCAAAGGGGGAA</genome_strand>
        <mrna_strand>GCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGCCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGAT........................................................................................................................................................................CTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAACTATGGTGTAGTATATAATTCCATTTTCCAATTGCATGAATGAAATACTGCAAGATTCATATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732525" ref_strand="+" ref_description="SGN-E732525 [LB02BF08]">
      <seq>cagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatggccttgtaaagttgtaattgtgagtttactagacaatataatggatttttcttatattccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="8916" stop="7854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8616" g_stop="8146" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732525" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8616" e_stop="8146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAACTATGGTG</genome_strand>
        <mrna_strand>CAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734689" ref_strand="+" ref_description="SGN-E734689 [LB13BD01]">
      <seq>ctttgacatttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctgggaaatgaatatcataaattgatggccttgtaaaagttgaattgggagtttactaaacaatataatggaattttttcttatattccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9373" stop="7854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9073" g_stop="8646" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8645" i_stop="8535" i_length="111">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8534" g_stop="8147" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="818" r_length="390" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734689" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9073" e_stop="8646"/>
          <exon e_start="8534" e_stop="8147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGG-A-TTTTTCTTATATTCCAACTATGGT</genome_strand>
        <mrna_strand>CTTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCT...............................................................................................................GTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGGAAATGAATATCATAAATTGATGGCCTTGTAAAAGTTGAATTGGGAGTTTACTAAACAATATAATGGAATTTTTTCTTATATTCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732737" ref_strand="+" ref_description="SGN-E732737 [LB03AA03]">
      <seq>aggacatttcaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcattaattgatggccttgtaaagttgtaattgtgaatttactaaaacatataatgggatttttcttatattccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9369" stop="7854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9071" g_stop="8154" g_length="918"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="918" r_length="918" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="919" polyA_stop="933"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732737" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9071" e_stop="8154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAAT-GGATTTTTCTTATATTCCAA</genome_strand>
        <mrna_strand>AGGACATTTC-AACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATTAATTGATGGCCTTGTAAAGTTGTAATTGTGAATTTACTAAAACATATAATGGGATTTTTCTTATATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733684" ref_strand="+" ref_description="SGN-E733684 [LB10CF11]">
      <seq>cccgtaatggtgtcaatttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatggccttgtaaagttgtaattgtgagtttactagacaatataatggatttttcttatattccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="8974" stop="7854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8674" g_stop="8154" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="531"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8674" e_stop="8154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAA</genome_strand>
        <mrna_strand>CCCGTAATGGTGTCAATTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342062" ref_strand="+" ref_description="SGN-E342062 [cTOF-10-P1]">
      <seq>agatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatggccttgtaaagttgtaattgtgagtttactagacaatantaatggatttttcttatattccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="8923" stop="7854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8623" g_stop="8154" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="482"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342062" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8623" e_stop="8154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATA-TAATGGATTTTTCTTATATTCCAA</genome_strand>
        <mrna_strand>AGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATANTAATGGATTTTTCTTATATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279120" ref_strand="+" ref_description="SGN-E279120 [cLEL-4-B9](-)">
      <seq>ttttttataagaaaaatccattatattgtctagtaaactcacaattacaactttacaaggccatcaatttatgatattcattttccaggaacaaagtttgtggcaaaggcccaggcattgttattaactggatccgcaaggtggtcagcgaggttctccaatggaccctttccggtaacaatggcctgaacaaagaacccaaacatagagaacatagcaagtctgccgttcttgatctccttaaccttaagctcagcaaatgcctccgggtcttcagcaaggcctaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaggaggtccaccagcaatgcggtatccctcaacggctcccatcaacacaacttggcaagcccagactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="7860" stop="8855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8155" g_stop="8550" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E279120" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8155" e_stop="8550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATATAAGAAAAATCCATTATATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCGAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAACCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTAACCTTAAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGACAAGCCCAG</genome_strand>
        <mrna_strand>TTTTTTATAAGAAAAATCCATTATATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCGAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAACCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTAACCTTAAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAGGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726264" ref_strand="+" ref_description="SGN-E726264 [LA11BC07]">
      <seq>atttcaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatggccttgtaaagttgtaattgtgagtttactagacaatataatggatttttcttatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9366" stop="7857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9066" g_stop="8157" g_length="910"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="909" r_length="909" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726264" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9066" e_stop="8157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTC</genome_strand>
        <mrna_strand>ATTTC-AACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392831" ref_strand="+" ref_description="SGN-E392831 [TUS-37-G2]">
      <seq>atataagaaaaatccattatattgtctagtaaactcacaattacaactttacaaggccatcaatttatgatattcattttccaggaacaaagtttgtggcaaaggcccaggcattgttattaactggatccgcaaggtggtcagcgaggttctccaatggaccctttccggtaacaatggcctgaacaaagaacccaaacatagagaacatagcaagtctgccgttcttgatctccttaaccttaagctcagcaaatgcctccgggtcttcagcaaggcctaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatgcggtatccctcaacggctcccatcaacacaacttggcaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtaatcaagtccaccctcgctgaagatctgggatccaaccttgaaccacacagcctcaccgaacttgacaccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="7859" stop="8970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8159" g_stop="8670" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E392831" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8159" e_stop="8670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAAGAAAAATCCATTATATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCGAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAACCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTAACCTTAAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTA</genome_strand>
        <mrna_strand>ATATAAGAAAAATCCATTATATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCGAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAACCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTAACCTTAAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAACCTTGAACCACACAGCCTCACCGAACTTGACACCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373828" ref_strand="+" ref_description="SGN-E373828 [TUS-31-C4]">
      <seq>tataagaaaaatccattatattgtctagtaaactcacaattacaactttacaaggccatcaatttatgatattcattttccaggaacaaagtttgtggcaaaggcccaggcattgttattaactggatccgcaaggtggtcagcgaggttctccaatggaccctttccggtaacaatggcctgaacaaagaacccaaacatagagaacatagcaagtctgccgttcttgatctccttaaccttaagctcagcaaatgcctccgggtcttcagcaaggcctaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatgcggtatccctcaacggctcccatcaacacaacttggcaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtaatcaagtccaccctcgctgaagatctgggatccagccttgaaccacacagcctcaccgaacttgacaccattacgggccaatagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagttcacggttcttggcaaaagtttcagggtctgctgaaagtccagcggtatcccagccgtagtcaccagggaattcaccggtcaagtagcttggggactcaccagagaatgggccctagtacttaacacggtctggtccataccatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="7860" stop="9189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8160" g_stop="8889" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E373828" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8160" e_stop="8889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGAAAAATCCATTATATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCGAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAACCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTAACCTTAAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCAGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCTAAGTACTTAACACGGTCTGGTCCATACCATGGG</genome_strand>
        <mrna_strand>TATAAGAAAAATCCATTATATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCGAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAACCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTAACCTTAAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCTAGTACTTAACACGGTCTGGTCCATACCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289351" ref_strand="+" ref_description="SGN-E289351 [cLES-18-L6]">
      <seq>tataagaaaaatccattatattgtctagtaaactcacaattacaactttacaaggccatcaatttatgatattcattttccaggaacaaagtttgtggcaaaggcccaggcattgttattaactggatccgcaaggtggtcagcgaggttctccaatggaccctttccggtaacaatggcctgaacaaagaacccaaacatagagaacatagcaagtctgccgttcttgatctccttaaccttaagctcagcaaatgcctccgggtcttcagcaaggcctaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatgcggtatccctcaacggctcccatcaacacaacttggcaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtaatcaagtccaccctcgctgaagatctgggatccagccttgaaccacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="7860" stop="8945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8160" g_stop="8645" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E289351" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8160" e_stop="8645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGAAAAATCCATTATATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCGAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAACCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTAACCTTAAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACAC</genome_strand>
        <mrna_strand>TATAAGAAAAATCCATTATATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCGAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAACCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTAACCTTAAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738976" ref_strand="+" ref_description="SGN-E738976 [LC15CF10]">
      <seq>tgacatttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatggccttgtaaagttgtaattgtgagtttactaaacaatataatggatttttcttaatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9370" stop="7854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9070" g_stop="8163" g_length="908"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="908" r_length="908" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="915" polyA_stop="924"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E738976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9070" e_stop="8163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTT</genome_strand>
        <mrna_strand>TGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAAACAATATAATGGATTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228549" ref_strand="+" ref_description="SGN-E228549 [cLEL-29-C3](-)">
      <seq>tgggcttccaagttgtgttgatggaagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatggccttgtaaagttgtaattgtgagtttactagacaatataatggatttttcttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="8849" stop="7860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8549" g_stop="8163" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="402"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E228549" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8549" e_stop="8163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTT</genome_strand>
        <mrna_strand>TGGGCTTC-CAAGTTGTGTTGATGGAAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229221" ref_strand="+" ref_description="SGN-E229221 [cLEL-29-C3](-)">
      <seq>gcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacctgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatggccttgtaaagttgtaattgtgagtttactagacaatataatggatttttcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="8806" stop="7860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8506" g_stop="8163" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="362"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E229221" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8506" e_stop="8163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTT</genome_strand>
        <mrna_strand>GCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACCTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736298" ref_strand="+" ref_description="SGN-E736298 [LC05AE09]">
      <seq>catttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatgggcctgtaaagttgtaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9367" stop="7895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9067" g_stop="8195" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E736298" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9067" e_stop="8195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGT</genome_strand>
        <mrna_strand>CATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGGCCTGTAAAGTTGTAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732448" ref_strand="+" ref_description="SGN-E732448 [LB02AG11]">
      <seq>cttttcatttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttcctggaaaatgaatatcataaattgatggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9371" stop="7912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9073" g_stop="8212" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="861" r_length="861" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732448" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9073" e_stop="8212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCT</genome_strand>
        <mrna_strand>CTTT-TCATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729919" ref_strand="+" ref_description="SGN-E729919 [LA22CA08]">
      <seq>atttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaaagggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggcctttgccacaaactttgttccctggaaatgaatatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9366" stop="7924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9066" g_stop="8224" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729919" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9066" e_stop="8224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATA</genome_strand>
        <mrna_strand>ATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCCTGGAAATGAATATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730798" ref_strand="+" ref_description="SGN-E730798 [LA25AH12]">
      <seq>gacatttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattacgccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctatgtttgggttctttgttcaggccattgttaccggaacgggtccattggagaacctcgctgaccaccttgcggatccagttaataacaatgcctgggccctttgccacaaactttgttcctggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9369" stop="7934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9069" g_stop="8234" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="837" r_length="837" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730798" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9069" e_stop="8234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGG-CCTTTGCCACAAACTTTGTTCCTGGAAAAT</genome_strand>
        <mrna_strand>GACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTACGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAACGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCCTTTGCCACAAACTTTGTTCCTGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730235" ref_strand="+" ref_description="SGN-E730235 [LA23CA08]">
      <seq>atttcaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctcattcttccccttcttttgatgggcaggcagggaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgactagaatcccatggtatggaccacaccatgttaagtacttaggcccattctctggtgagtccccaaactacttgaccggtgaattccctggtgactacggctgggatacagctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcacatgggctatgcttggtgctcttggatgtgtcttccctgaactattggcccgtaatggtgtcaaatacggtgaggctgggtgggacaaggctggatcccatatcttcggcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttatgttgatgggagccattgagagataccgcattgctggtggacctcttggtgaggttgtcaacccactctaccccggtggcagcttcgacccattacgtcttgctgaagacccggaggcatttgctgatcttaacgttaaggagatcgagagcggcagacttgctatgtactctatgattgggtactttgttcaggccaatgtatacggaaaaggtccattgaagaacctcgctgaccaccttgcggatccagttaataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9366" stop="7973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9066" g_stop="8273" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730235" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9066" e_stop="8273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACA</genome_strand>
        <mrna_strand>ATTTC-AACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCATTCTTCCCCTTCTTTTGATGGGCAGGCAGGGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGACTAGAATCCCATGGTATGGACCACACCATGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAACTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACAGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCACATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAACTATTGGCCCGTAATGGTGTCAAATACGGTGAGGCTGGGTGGGACAAGGCTGGATCCCATATCTTCGGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTATGTTGATGGGAGCCATTGAGAGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCAACCCACTCTACCCCGGTGGCAGCTTCGACCCATTACGTCTTGCTGAAGACCCGGAGGCATTTGCTGATCTTAACGTTAAGGAGATCGAGAGCGGCAGACTTGCTATGTACTCTATGATTGGGTACTTTGTTCAGGCCAATGTATACGGAAAAGGTCCATTGAAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346897" ref_strand="+" ref_description="SGN-E346897 [cTOF-32-O22]">
      <seq>ctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9319" stop="7999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9019" g_stop="8299" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346897" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9019" e_stop="8299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGA</genome_strand>
        <mrna_strand>CTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290229" ref_strand="+" ref_description="SGN-E290229 [cLET-5-K22]">
      <seq>ccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgatgatgggagctgttgagggataccgaattgctggtggacctctcggtgaggttgtggacccactctaccctggtggcagcttctacccattatgccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9211" stop="8026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8911" g_stop="8326" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290229" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8911" e_stop="8326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGG</genome_strand>
        <mrna_strand>CCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGATGATGGGAGCTGTTGAGGGATACCGAATTGCTGGTGGACCTCTCGGTGAGGTTGTGGACCCACTCTACCCTGGTGGCAGCTTCTACCCATTATGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344642" ref_strand="+" ref_description="SGN-E344642 [cTOF-14-H15]">
      <seq>tcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattangccttgctgaagaacccgnagcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9363" stop="8059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9063" g_stop="8359" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E344642" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9063" e_stop="8359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTAT</genome_strand>
        <mrna_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGAACCCGNAGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290975" ref_strand="+" ref_description="SGN-E290975 [cLET-8-O2]">
      <seq>tgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaatgagatcaagaacggtagacttgctatgctctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9034" stop="8059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8734" g_stop="8359" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290975" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8734" e_stop="8359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTAT</genome_strand>
        <mrna_strand>TGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAATGAGATCAAGAACGGTAGACTTGCTATGCTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347753" ref_strand="+" ref_description="SGN-E347753 [cTOF-26-K14]">
      <seq>gacatttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccgnaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9369" stop="8060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9069" g_stop="8360" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347753" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9069" e_stop="8360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTA</genome_strand>
        <mrna_strand>GACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGNAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342605" ref_strand="+" ref_description="SGN-E342605 [cTOF-7-G18]">
      <seq>ctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatccctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattangccttgctgaagaccccgaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgctatgttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9310" stop="8060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9010" g_stop="8360" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342605" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9010" e_stop="8360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTA</genome_strand>
        <mrna_strand>CTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCCCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466372" ref_strand="+" ref_description="SGN-E466372 [cPRO-24-C15]">
      <seq>agaaatcactggaaatggaaggattactatgagaaaggctgtcgcaaagtctgccccatctagcagtccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggatactgctggactttcagcagaccctgaaacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagtttggtgaggctgtatggttcaaagctggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatttgggcttgccaagttgtgttgatgggagccgttgagggataccgtattgctggtggacctcttggtgaggttgtcgatccactctatccaggtggaagctttgacccattaggccttgctgatgatccagaggcatttgctgagctcaaggtaaaggagataaaaaacggcagacttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9255" stop="8068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8955" g_stop="8368" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E466372" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8955" e_stop="8368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTAT</genome_strand>
        <mrna_strand>AGAAATCACTGGAAATGGAAGGATTACTATGAGAAAGGCTGTCGCAAAGTCTGCCCCATCTAGCAGTCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACTGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTATGGTTCAAAGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGATCCACTCTATCCAGGTGGAAGCTTTGACCCATTAGGCCTTGCTGATGATCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATAAAAAACGGCAGACTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729250" ref_strand="+" ref_description="SGN-E729250 [LA20BH07]">
      <seq>gcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagcttaaggttaaggagatcaagaacggcagacttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9326" stop="8069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9026" g_stop="8369" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9026" e_stop="8369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTA</genome_strand>
        <mrna_strand>GCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288200" ref_strand="+" ref_description="SGN-E288200 [cLES-7-H8]">
      <seq>gcagctgctacaatggctctttcttccccttcatttctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaagcatttgctgagctcaaggtaaaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9326" stop="8089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9026" g_stop="8389" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288200" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9026" e_stop="8389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGAT</genome_strand>
        <mrna_strand>GCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTT-CTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAAGCATTTGCTGAGCTCAAGGTAAAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343125" ref_strand="+" ref_description="SGN-E343125 [cTOF-17-E24]">
      <seq>tttgacatttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctacccccgtggcagcttcgacccattangccttgctgaagaccccggagcatttgctgagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9372" stop="8103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9072" g_stop="8403" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343125" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9072" e_stop="8403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTT</genome_strand>
        <mrna_strand>TTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCCGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGGAGCATTTGCTGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343662" ref_strand="+" ref_description="SGN-E343662 [cTOF-20-P10]">
      <seq>tttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9365" stop="8103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9065" g_stop="8403" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343662" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9065" e_stop="8403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTT</genome_strand>
        <mrna_strand>TTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344438" ref_strand="+" ref_description="SGN-E344438 [cTOF-14-E22]">
      <seq>tttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctacccccgtggcagcttcgacccattangccttgctgaagaccccgnagcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9365" stop="8104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9065" g_stop="8404" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E344438" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9065" e_stop="8404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>TTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCCGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGNAGCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279049" ref_strand="+" ref_description="SGN-E279049 [cLEL-4-G19](-)">
      <seq>cagcaaatgcctccgggtcttcagcaaggcctaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatgcggtatccctcaacggctcccatcaacacaacttggcaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtaatcaagtccaccctcgctgaagatctgggatccagccttgaaccacacagcctcaccgaacttgacaccattacgggccaatagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagttcacggttcttggcaaaagtttcagggtctgctgaaagtccagcggtatcccagccgtagtcaccagggaattcaccggtcaagtggcttggggactcaccagagactcggcctaagtacttaacacggtctaatccataccatgggcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="8108" stop="9190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8408" g_stop="8897" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E279049" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8408" e_stop="8897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCAGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCTAAGTACTTAACACGGTCTGGTCCATACCATGGGCTGCTAGA</genome_strand>
        <mrna_strand>CAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTGGCTTGGGGACTCACCAGAGACTCGGCCTAAGTACTTAACACGGTCTAATCCATACCATGGGCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731697" ref_strand="+" ref_description="SGN-E731697 [LA27DF09]">
      <seq>aaacacaaatggcagctgccccttagaatctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggccttggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21175" stop="8140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9036" g_stop="8440" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731697" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9036" e_stop="8440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAC-CATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATT</genome_strand>
        <mrna_strand>AAACACAAATGGCAGCTGCCCCTTAGAATCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGCCTTGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731474" ref_strand="+" ref_description="SGN-E731474 [LA27BA03]">
      <seq>ctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9310" stop="8157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9010" g_stop="8457" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731474" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9010" e_stop="8457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGAT-ACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGT</genome_strand>
        <mrna_strand>CTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATAACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277717" ref_strand="+" ref_description="SGN-E277717 [cLEL-5-A14](-)">
      <seq>agggtagagtgggtcgacaaccttcaccaagaggtccaccagcaatacggtatccctcaacagctcccatcaacacaacttggcaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccttcactgaagatctgggatccggccttgaaccacacagcctcaccgaacttgacaccattacgggccaagagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagttcacggttcttggcaaaagtttcagggtctgctgaaagtccagcggtatcccacccgtaatcacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="8161" stop="9107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8460" g_stop="8813" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E277717" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8460" e_stop="8813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTAGAGTGGGTCGACAACC-TCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCAGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAA</genome_strand>
        <mrna_strand>AGGGTAGAGTGGGTCGACAACCTTCACCAAGAGGTCCACCAGCAATACGGTATCCCTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCTTCACTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284904" ref_strand="+" ref_description="SGN-E284904 [cLER-19-N7]">
      <seq>aaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggtgaggttgtcgacccactctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9361" stop="8163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9061" g_stop="8463" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284904" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9061" e_stop="8463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTAC</genome_strand>
        <mrna_strand>AAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345217" ref_strand="+" ref_description="SGN-E345217 [cTOF-13-A10]">
      <seq>tggctgtttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccatggtctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcatatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccatatcttcagtgaacgtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgctgatgggagctgttgagggataccgtattgcttgtggacctctcggtgaggttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9313" stop="8174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9013" g_stop="8474" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345217" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9013" e_stop="8474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCG</genome_strand>
        <mrna_strand>TGGCTGTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATGGTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCATATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCATATCTTCAGTGAACGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGCTGATGGGAGCTGTTGAGGGATACCGTATTGCTTGTGGACCTCTCGGTGAGGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200456" ref_strand="+" ref_description="SGN-E200456 [cLEB-8-H23]">
      <seq>gcacgagcgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgatgagggataccgcattgctggtggacctcttggtgaggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9089" stop="8177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8794" g_stop="8477" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E200456" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8794" e_stop="8477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTG</genome_strand>
        <mrna_strand>GCACGAGCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGATGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280920" ref_strand="+" ref_description="SGN-E280920 [cLEL-6-H12](-)">
      <seq>caccaagaggtccaccagcaatacggtatccctcatcagctcccatcaacacatcttggcaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccttcactgaagatctgggatccggccttgaaccacacagcctcaccgaacttgacaccattacgggccaagagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcgagttcacggttcttggcaaaagtctcagggtctgctgaaagtccagcggaatcccacccgtaatcacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="8183" stop="9107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8483" g_stop="8813" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E280920" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8483" e_stop="8813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCAGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAA</genome_strand>
        <mrna_strand>CACCAAGAGGTCCACCAGCAATACGGTATCCCTCATCAGCTCCCATCAACACATCTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCTTCACTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAAGTCTCAGGGTCTGCTGAAAGTCCAGCGGAATCCCACCCGTAATCACCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340705" ref_strand="+" ref_description="SGN-E340705 [cTOF-1-J10]">
      <seq>ttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctcttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9348" stop="8184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9048" g_stop="8484" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340705" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9048" e_stop="8484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGT</genome_strand>
        <mrna_strand>TTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286896" ref_strand="+" ref_description="SGN-E286896 [cLES-14-L20]">
      <seq>tcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctggtggacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9363" stop="8188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9063" g_stop="8488" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E286896" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9063" e_stop="8488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCT</genome_strand>
        <mrna_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295541" ref_strand="+" ref_description="SGN-E295541 [cLET-23-J1]">
      <seq>tcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9363" stop="8198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9063" g_stop="8498" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295541" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9063" e_stop="8498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTG</genome_strand>
        <mrna_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291216" ref_strand="+" ref_description="SGN-E291216 [cLET-2-G6]">
      <seq>ttgacatttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggataccgcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9371" stop="8200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9071" g_stop="8500" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E291216" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9071" e_stop="8500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGC</genome_strand>
        <mrna_strand>TTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289146" ref_strand="+" ref_description="SGN-E289146 [cLES-18-J9]">
      <seq>aatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9329" stop="8202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9030" g_stop="8502" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289146" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9030" e_stop="8502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATT</genome_strand>
        <mrna_strand>AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729120" ref_strand="+" ref_description="SGN-E729120 [LA20AC01]">
      <seq>atttcaaacactcancacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgagggatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9366" stop="8207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9066" g_stop="8507" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729120" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9066" e_stop="8507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACC</genome_strand>
        <mrna_strand>ATTTCAAACACTCANCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295570" ref_strand="+" ref_description="SGN-E295570 [cLET-23-B14]">
      <seq>ccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgagggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9136" stop="8208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8836" g_stop="8508" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295570" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8836" e_stop="8508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATAC</genome_strand>
        <mrna_strand>CCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282679" ref_strand="+" ref_description="SGN-E282679 [cLER-15-D19]">
      <seq>tacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9318" stop="8221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9018" g_stop="8521" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E282679" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9018" e_stop="8521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGC</genome_strand>
        <mrna_strand>TACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284353" ref_strand="+" ref_description="SGN-E284353 [cLER-16-G5]">
      <seq>tctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9309" stop="8221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9009" g_stop="8521" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284353" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9009" e_stop="8521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGC</genome_strand>
        <mrna_strand>TCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295362" ref_strand="+" ref_description="SGN-E295362 [cLET-23-G12]">
      <seq>acatttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9368" stop="8222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9068" g_stop="8522" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295362" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9068" e_stop="8522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAG</genome_strand>
        <mrna_strand>ACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289517" ref_strand="+" ref_description="SGN-E289517 [cLET-3-M19]">
      <seq>tcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaagcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9363" stop="8223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9063" g_stop="8523" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289517" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9063" e_stop="8523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGA</genome_strand>
        <mrna_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAAGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283929" ref_strand="+" ref_description="SGN-E283929 [cLER-13-B21]">
      <seq>tctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcattgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9146" stop="8224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8846" g_stop="8524" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283929" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8846" e_stop="8524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGG</genome_strand>
        <mrna_strand>TCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCATTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726126" ref_strand="+" ref_description="SGN-E726126 [LA10BF02]">
      <seq>atttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgttgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagctgaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttggtgcacccaagcttggtccatgcacaaagcatctnggccatctgggcttgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9366" stop="8238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9066" g_stop="8538" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726126" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9066" e_stop="8538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAA</genome_strand>
        <mrna_strand>ATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGTGCACCCAAGCTTGGTCCATGCACAAAGCATCTNGGCCATCTGGGCTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318696" ref_strand="+" ref_description="SGN-E318696 [cTOB-9-I8]">
      <seq>tttcttccccttcatttgctggacaggcaggcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtgtggccctgaccgcgttaagaacttgggcccattctctggtgagtccccacgctacttgacccctgaattccctggagattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgagtcttccctgagctcttggcccgtaatggtgtcaagttccctgaggctgagtggttcaaggcccgatcccacatcttcactgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11646" stop="3398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9007" g_stop="8539" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E318696" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9007" e_stop="8539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCA</genome_strand>
        <mrna_strand>TTTCTTCCCCTTCATTTGCTGGACAGGCAGGCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTGTGGCCCTGACCGCGTTAAGAACTTGGGCCCATTCTCTGGTGAGTCCCCACGCTACTTGACCCCTGAATTCCCTGGAGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGAGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCCCTGAGGCTGAGTGGTTCAAGGCCCGATCCCACATCTTCACTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345802" ref_strand="+" ref_description="SGN-E345802 [cTOF-18-H15]">
      <seq>tttgacatttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccggaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgctaggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacaaagcatcttggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9372" stop="8252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9072" g_stop="8552" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345802" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9072" e_stop="8552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCA</genome_strand>
        <mrna_strand>TTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCGGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTAGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295553" ref_strand="+" ref_description="SGN-E295553 [cLET-23-L21]">
      <seq>ttcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9364" stop="8268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9064" g_stop="8568" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295553" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9064" e_stop="8568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCA</genome_strand>
        <mrna_strand>TTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290046" ref_strand="+" ref_description="SGN-E290046 [cLET-5-O23]">
      <seq>tcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatcccagatcttcagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9363" stop="8311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9063" g_stop="8611" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290046" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9063" e_stop="8611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGA</genome_strand>
        <mrna_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282926" ref_strand="+" ref_description="SGN-E282926 [cLER-17-C17]">
      <seq>tcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9363" stop="8326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9063" g_stop="8626" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E282926" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9063" e_stop="8626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATC</genome_strand>
        <mrna_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574988" ref_strand="+" ref_description="SGN-E574988 [34543]">
      <seq>tccaaacacccatcacttttctcctgttataaaccatggcagcttccacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggaccagaccgtgttaagtacttaggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacggctgggatactgctggactttcagcagaccctgaaacctttgccaagaaccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9364" stop="8444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9064" g_stop="8744" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E574988" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9064" e_stop="8744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTG</genome_strand>
        <mrna_strand>TCCAAACACCCATCACTTTTCTCCTGTTATAAACCATGGCAGCTTCCACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACTGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477014" ref_strand="+" ref_description="SGN-E477014 [cSTB-46-P24]">
      <seq>ctttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9349" stop="8473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9049" g_stop="8773" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E477014" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9049" e_stop="8773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGC</genome_strand>
        <mrna_strand>CTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293810" ref_strand="+" ref_description="SGN-E293810 [cLET-37-I20]">
      <seq>tcaaacactcatcacttttctcttgttataaaccatggcagcttctacaatggctctttcttccccttcttttgctgggcaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgttgccaagtctgccccgtctagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="9363" stop="8589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9063" g_stop="8889" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293810" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9063" e_stop="8889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGC</genome_strand>
        <mrna_strand>TCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219124" ref_strand="+" ref_description="SGN-E219124 [cLEL-11-F6](-)">
      <seq>accccggtggcagcttcgacccattaggccttgctaaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatattcaaaatttccaatgattgtgtaatcctgagttacatttttcaaagccacgaataaaaaatattgccacttttatcccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11103" stop="10093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10803" g_stop="10378" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E219124" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10803" e_stop="10378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTAATCCTGAGTTACATTTTTCAAAGCCACGAATAAAAAATATTGCCACTTTTATACCAAAGGGTAGAAGAAAGAG</genome_strand>
        <mrna_strand>ACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTAAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTAATCCTGAGTTACATTTTTCAAAGCCACGAATAAAAAATATTGCCACTTTTATCCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222688" ref_strand="+" ref_description="SGN-E222688 [cLEL-16-E11](-)">
      <seq>catgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatattcaaaatttccaatgattgtgtaatcctgagttacatttttcaacgccacgaataaaaaatattgccacttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11212" stop="10093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10912" g_stop="10384" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E222688" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10912" e_stop="10384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTAATCCTGAGTTACATTTTTCAAAGCCACGAATAAAAAATATTGCCACTTTTATACCAAAGGGTAGAAG</genome_strand>
        <mrna_strand>CATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTAATCCTGAGTTACATTTTTCAACGCCACGAATAAAAAATATTGCCACTTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222268" ref_strand="+" ref_description="SGN-E222268 [cLEL-16-E11](-)">
      <seq>catttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaacccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatattcaaaatttccaatgattgtgtaatcctgagttacatttttcaaagccacgaataaaaaatattgccccttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11055" stop="10093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10755" g_stop="10384" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E222268" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10755" e_stop="10384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAA-CCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTAATCCTGAGTTACATTTTTCAAAGCCACGAATAAAAAATATTGCCACTTTTATACCAAAGGGTAGAAG</genome_strand>
        <mrna_strand>CATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTAATCCTGAGTTACATTTTTCAAAGCCACGAATAAAAAATATTGCCCCTTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735543" ref_strand="+" ref_description="SGN-E735543 [LC02AC12]">
      <seq>cgatttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatattcaaaatttccaatgattgtgtaatcctgagttacatttttcaaagccacgaataaaaaatattgccacttttataccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11244" stop="10093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10945" g_stop="10385" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E735543" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10945" e_stop="10385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTAATCCTGAGTTACATTTTTCAAAGCCACGAATAAAAAATATTGCCACTTTTATACCAAAGGGTAGAA</genome_strand>
        <mrna_strand>CGATTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTAATCCTGAGTTACATTTTTCAAAGCCACGAATAAAAAATATTGCCACTTTTATACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294211" ref_strand="+" ref_description="SGN-E294211 [cLET-14-C21]">
      <seq>ttttttttggtataaaagtggcaatattttttattcgtggctttgaaaaatgtaactcaggattacacaatcattggaaattttgaatattgaaaaaaaataatccattctaatgtcaagtaattactgacaactactttacaaggccatcaaacaatcaaattttaagaatgtttaagattttcattttccgggaacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttttccaatggaccctttccggtaacaatggcttgaacgaagaatccaaacatcgagaacatagcaagtctgccgttcttaatctcctttaccttgagctcggcaaatgcctcagggtcttcagcaaggcctaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatgcggtaaccttcaacggctcccatcaacacaacttgacaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccctcgctgaagatctgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="10093" stop="11267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10388" g_stop="10967" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E294211" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10388" e_stop="10967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTTTGGTATAAAAGTGGCAATATTTTTTATTCGTGGCTTTGAAAAATGTAACTCAGGATTACACAATCATTGGAAATTTTGAATATTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTCCAATGGACCCTTTCCAGTAACAATGGCTTGAACGAAGAATCCAAACATCGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCGGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTAACCTTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGAT</genome_strand>
        <mrna_strand>TTTTTTTTGGTATAAAAGTGGCAATATTTTTTATTCGTGGCTTTGAAAAATGTAACTCAGGATTACACAATCATTGGAAATTTTGAATATTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACGAAGAATCCAAACATCGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCGGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTAACCTTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733678" ref_strand="+" ref_description="SGN-E733678 [LB10CF05]">
      <seq>gctaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatattcaaaattttccatgattgtgtnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11551" stop="10150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11251" g_stop="10451" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733678" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11251" e_stop="10451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTA</genome_strand>
        <mrna_strand>GCTAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTTCCATGATTGTGTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733550" ref_strand="+" ref_description="SGN-E733550 [LB10BC08]">
      <seq>gctaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatattcaaaattttcaatgattgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11551" stop="10150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11251" g_stop="10451" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733550" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11251" e_stop="10451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTA</genome_strand>
        <mrna_strand>GCTAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTTCAATGATTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294231" ref_strand="+" ref_description="SGN-E294231 [cLET-14-K9]">
      <seq>ttgcaaaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatattcaaaatttccaatgattgtgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="10932" stop="10150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10632" g_stop="10451" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="183" polyA_stop="193"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>182</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10632" e_stop="10451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTA</genome_strand>
        <mrna_strand>TTGCAAACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540569" ref_strand="+" ref_description="SGN-E540569 [TUS-60-O16](-)">
      <seq>gaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatattcaaaatttccaatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11583" stop="10158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11283" g_stop="10459" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="826" polyA_stop="836"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E540569" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11283" e_stop="10459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATG</genome_strand>
        <mrna_strand>GAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730692" ref_strand="+" ref_description="SGN-E730692 [LA24DF01]">
      <seq>ccataatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaacaccttgcagaccccgttaacaacaacgcttgggctttcgcaacaactttgttccccggaaatgaaaaatctaaccattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattaaaatggattattttttttcaatatccaaaatttccaaaaaaaaaaaaaaaaaaaaaaaatctggggggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11720" stop="10161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11420" g_stop="10462" g_length="959"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="958" r_length="958" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="959" polyA_stop="982"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730692" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>959</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11420" e_stop="10462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCA</genome_strand>
        <mrna_strand>CCATAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGAACACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCAAC-AACTTTGTTCCCCGGAAATGAAAAATCTAACCATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAAAATGGATTATTTTTTTTCAATATCCAAAATTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346692" ref_strand="+" ref_description="SGN-E346692 [cTOF-28-O18]">
      <seq>tctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatattcaaaatttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11331" stop="10161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11031" g_stop="10462" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346692" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11031" e_stop="10462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCA</genome_strand>
        <mrna_strand>TCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732452" ref_strand="+" ref_description="SGN-E732452 [LB02AH03]">
      <seq>gcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatattcaaaatttccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11253" stop="10161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10953" g_stop="10462" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="511"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10953" e_stop="10462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCA</genome_strand>
        <mrna_strand>GCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731500" ref_strand="+" ref_description="SGN-E731500 [LA27BC10]">
      <seq>caatatttaataccataaaatactcaacacttttctcttaaactaaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttccccggaaaaatgaaatccttaaacattcttaaaaattgaatggtttgatggccttgtaaaataattgtcagtaaattactttaacattaagaagggaataattttttttccaaattcaaaattttccaaaaaaaaaaaaaaaaaaaaccttcagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11717" stop="10161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11417" g_stop="10465" g_length="953"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="960" r_length="960" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="964" polyA_stop="984"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731500" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>953</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11417" e_stop="10465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTT-CCCGG-AAAATGAAAATCTTAAACATTCTTAAAATTTG-ATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGT-AATTAC-TTGACATT-AGAATGG-ATTATTTTTTTTCAATATTCAAAATTT</genome_strand>
        <mrna_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAAACTAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCCGGAAAAATGAAATCCTTAAACATTCTTAAAAATTGAATGGTTTGATGGCCTTGTAAAATAATTGTCAGTAAATTACTTTAACATTAAGAAGGGAATAATTTTTTTTCCAAATTCAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732274" ref_strand="+" ref_description="SGN-E732274 [LB01CH11]">
      <seq>cgctacttagggacattctctggtgagtccccaagctacttgcctggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11500" stop="10175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11203" g_stop="10465" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732274" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11203" e_stop="10465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTT</genome_strand>
        <mrna_strand>CGCTACTTAGGGACATTCTCTGGTGAGTCCCCAAGCTACTTGCCTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278680" ref_strand="+" ref_description="SGN-E278680 [cLER-10-F18]">
      <seq>ttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11233" stop="10175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10933" g_stop="10467" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278680" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10933" e_stop="10467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAAT</genome_strand>
        <mrna_strand>TTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415302" ref_strand="+" ref_description="SGN-E415302 [STM-21-I7]">
      <seq>tttttttttttttaaagaaaataatccattctattgtcaagcaactcacaactactttacaaggccatcaaacaatgaaatattaagattgtttaagattttcattttctggggacaaagtttgtggcataagaccaggcgttgttgttaacggggtctgcaaggtggtcagcaagattctccaatggaccctttccggtaacaatggcttgaacgaagaatccaaacatagagaacatagcaagtctaccgttcttgatctcctttaccttgagctcagcaaatgcctctgggtcttcagcaagacccaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="10175" stop="11130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10467" g_stop="10830" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E415302" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10467" e_stop="10830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGAATATTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTCCAATGGACCCTTTCCAGTAACAATGGCTTGAACGAAGAATCCAAACATCGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCGGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTAAAGAAAATAATCCATTCTATTGTCAAG-CA--ACTCACAACTACTTTACAAGGCCATCAAACAATGAAATATTAAGATTGTTTAAGATTTTCATTTTCTGGGGACAAAGTTTGTGGCATAAGACCAGGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGATTCTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACGAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGACCCAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277673" ref_strand="-" ref_description="SGN-E277673 [cLEL-5-C3](-)">
      <seq>gcacgagccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaatataaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11067" stop="10168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10771" g_stop="10469" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="303" polyA_stop="318"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277673" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277673" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10771" e_stop="10469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAA</genome_strand>
        <mrna_strand>GCACGAG-CCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296845" ref_strand="+" ref_description="SGN-E296845 [cLET-26-D10]">
      <seq>ttgaatattgaaaaaaaataatccattctaatgtcaagtaattactgacaactactttacaaggccatcaaacaatcaaattttaagaatgtttaagattttcattttccgggaacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttttccaatggaccctttccggtaacaatggcttgaacgaagaatccaaacatcgagaacatagcaagtctgccgttcttaatctcctttaccttgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="10170" stop="11047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10470" g_stop="10747" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E296845" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10470" e_stop="10747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATATTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTCCAATGGACCCTTTCCAGTAACAATGGCTTGAACGAAGAATCCAAACATCGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTC</genome_strand>
        <mrna_strand>TTGAATATTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACGAAGAATCCAAACATCGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281619" ref_strand="+" ref_description="SGN-E281619 [cLER-14-I11]">
      <seq>ttttttgaaaaaaaataatccattctaatgtcaagtaattactgacaactactttacaaggccatcaaacaatcaaattttaagaatgtttaagattttcattttccgggaacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttttccaatggaccctttccggtaacaatggcttgaacgaagaatccaaacatcgagaacatagcaagtctgccgttcttaatctcctttaccttgagctcggcaaatgcctcagggtcttcagcaaggcctaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatgcggtaaccttcaacggctcccatcaacacaacttgacaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="10175" stop="11186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10473" g_stop="10886" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E281619" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10473" e_stop="10886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTCCAATGGACCCTTTCCAGTAACAATGGCTTGAACGAAGAATCCAAACATCGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCGGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTAACCTTCAACGGCTCCCATCAACACAACTTGACAAGCC</genome_strand>
        <mrna_strand>TTTTTTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACGAAGAATCCAAACATCGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCGGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTAACCTTCAACGGCTCCCATCAACACAACTTGACAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343095" ref_strand="-" ref_description="SGN-E343095 [cTOF-11-L4]">
      <seq>atattgaaaaaaaataatccattctaatgtcaagtaattactgacaactactttacaaggccatcaaacaatcaaattttaagaatgtttaagattttcattttccgggaacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttttccaatgcggtaaccttcaacggctcccatcaacacaacttgacaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccctcgctgaagatctgggatccggccttgaaccacacagcctcaccaaactttacaccgttgcgggccaagagctcaggaaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagttcacggttcttggcaaaggtctcagggtcagctgaaagtccagcggtatcccagccgtagtcaccagggaattcgccagtcaagtagcttggggactcaccagagaatggtcccaagtacttaacacggtcagggccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagaattttctgaggcagatggtgagagtttgactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="10174" stop="11620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10474" g_stop="10651" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10652" i_stop="10839" i_length="188">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10840" g_stop="11320" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="659" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E343095" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343095" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10474" e_stop="10651"/>
          <exon e_start="10840" e_stop="11320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTCCAATGGACCCTTTCCAGTAACAATGGCTTGAACGAAGAATCCAAACATCGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCGGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTAACCTTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCAGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCGCCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAATTTTCTGAGGCAGATGGTGAGAGTTTGACTGC</genome_strand>
        <mrna_strand>ATATTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTC............................................................................................................................................................................................CAATGCGGTAACCTTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCAGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCGCCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAATTTTCTGAGGCAGATGGTGAGAGTTTGACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737660" ref_strand="+" ref_description="SGN-E737660 [LC10DA10]">
      <seq>taccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtattgtcagtaattacttgacattagaatggattattttttttcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11707" stop="10175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11407" g_stop="10475" g_length="933"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="932" r_length="932" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E737660" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11407" e_stop="10475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATA</genome_strand>
        <mrna_strand>TACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTA-TTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374338" ref_strand="-" ref_description="SGN-E374338 [TUS-33-B12]">
      <seq>cctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaaaaaaaaaaaaaaaaaaaactgagactagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11400" stop="10175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11100" g_stop="10478" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="643"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E374338" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374338" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11100" e_stop="10478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCA</genome_strand>
        <mrna_strand>CCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391268" ref_strand="+" ref_description="SGN-E391268 [TUS-47-K11](-)">
      <seq>tttttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagattttcagggggggtggacttgattatttgggcaacccaagcttggtccatgcacaaagctttttggccatttgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgttggtggactttttgggggggttgtggacccattttaccccgggggcagtttggacccattaggccttgttgaagaccctggggcatttgccgggctcaaggtaaaggggattaagaacggcagacttgttatgttttggatgtttggatttttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgacccccttgcggaccccgttaacaacaacgcttgggctttcgccccaaactttgttcccggaaaatgaaatttttaaacatttttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgccattagaatggattattttttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11319" stop="10175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11020" g_stop="10478" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="544" polyA_stop="580"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E391268" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11020" e_stop="10478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCA</genome_strand>
        <mrna_strand>TTTTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATTTTCAGGGGGGGTGGACTTGATTATTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCTTTTTGGCCATTTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGTTGGTGGACTTTTTGGGGGGGTTGTGGACCCATTTTACCCCGGGGGCAGTTTGGACCCATTAGGCCTTGTTGAAGACCCTGGGGCATTTGCCGGGCTCAAGGTAAAGGGGATTAAGAACGGCAGACTTGTTATGTTTTGGATGTTTGGATTTTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCCCCTTGCGGACCCCGTTAACAACAACGCTTGGGCTTTCGCCCCAAACTTTGTTCCCGGAAAATGAAATTTTTAAACATTTTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGCCATTAGAATGGATTATTTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732309" ref_strand="+" ref_description="SGN-E732309 [LB01DC11]">
      <seq>cgtttaaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11280" stop="10179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10981" g_stop="10478" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="520"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732309" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10981" e_stop="10478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCA</genome_strand>
        <mrna_strand>CGTTTAAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237150" ref_strand="+" ref_description="SGN-E237150 [cLEL-7-I5](-)">
      <seq>ggtggacctcttggtgaggttgtcgaccccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11137" stop="10175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10837" g_stop="10478" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="377"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E237150" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10837" e_stop="10478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGACCTCTTGGTGAGGTTGTCGA-CCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCA</genome_strand>
        <mrna_strand>GGTGGACCTCTTGGTGAGGTTGTCGACCCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237293" ref_strand="+" ref_description="SGN-E237293 [cLEL-7-I5](-)">
      <seq>tctacccggtggcagcttcgaacccattaggccttgctgaagacccttaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaaagtagttgtcagtaattacttgacattagaatggattattttttttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11106" stop="10175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10806" g_stop="10478" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="330" polyA_stop="345"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E237293" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10806" e_stop="10478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACCCCGGTGGCAGCTTCGA-CCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCA</genome_strand>
        <mrna_strand>TCTAC-CCGGTGGCAGCTTCGAACCCATTAGGCCTTGCTGAAGACCCTTAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730079" ref_strand="+" ref_description="SGN-E730079 [LA23AA04]">
      <seq>atatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttnaacattcttaaaatttgattgttgatgggccttgtaagtaattgtcagtaattacttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11715" stop="10202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11415" g_stop="10502" g_length="914"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="913" r_length="913" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730079" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11415" e_stop="10502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGAC</genome_strand>
        <mrna_strand>ATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTNAACATTCTTAAAATTTGATTGTTGATGGGCCTTGT-AAGTAATTGTCAGTAATTACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730866" ref_strand="+" ref_description="SGN-E730866 [LA25BG08]">
      <seq>caatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagacccccgttaacaacaaacgcttgggctttcgccacaaactttgttcccgggaaaatgaaaatctttaaacattcttaaaaatttgattggtttgaatggccttgataaagtaatttgtcaantaattaacttgacatttagagtgggattatttttttttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11717" stop="10215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11417" g_stop="10522" g_length="896"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="904" r_length="904" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="956" polyA_stop="968"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730866" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11417" e_stop="10522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGA-CCCCGTTAACAAC-AACGCTTGGGCTTTCGCCACAAACTTTGTTCCC-GGAAAATGAAAATC-TTAAACATTCTT-AAAATTTGATT-GTTTG-ATGGCCTTG-TAAAGTA</genome_strand>
        <mrna_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCCGTTAACAACAAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGGAAAATGAAAATCTTTAAACATTCTTAAAAATTTGATTGGTTTGAATGGCCTTGATAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734563" ref_strand="+" ref_description="SGN-E734563 [LB13AA05]">
      <seq>cacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggccttgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11690" stop="10226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11390" g_stop="10526" g_length="865"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="865" r_length="865" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11390" e_stop="10526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAA</genome_strand>
        <mrna_strand>CACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726425" ref_strand="+" ref_description="SGN-E726425 [LA11DB03]">
      <seq>cttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttacaacaacgcttgggctttcgccacaaactttgttccccggaaatgaaaatcttaaacattcttaaaaattgattgtttgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11723" stop="10233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11423" g_stop="10533" g_length="891"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="890" r_length="890" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726425" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11423" e_stop="10533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGC</genome_strand>
        <mrna_strand>CTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTT-ACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCCGGAAATGAAAATCTTAAACATTCTTAAAAATTGATTGTTTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738871" ref_strand="+" ref_description="SGN-E738871 [LC15BA10]">
      <seq>aatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtttcccgaaaatgaaaatcttaaacattcttaaaatttgattgtttgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11716" stop="10233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11416" g_stop="10533" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="884" r_length="884" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E738871" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11416" e_stop="10533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGC</genome_strand>
        <mrna_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTTCCCGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730415" ref_strand="+" ref_description="SGN-E730415 [LA24AC06]">
      <seq>gctttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgctttggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattctttaaatttgattgtttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11725" stop="10234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11425" g_stop="10534" g_length="892"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="892" r_length="892" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730415" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11425" e_stop="10534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGG</genome_strand>
        <mrna_strand>GCTTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTTGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTTAAATTTGATTGTTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726824" ref_strand="+" ref_description="SGN-E726824 [LA12DF12]">
      <seq>gccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttcccggaaaaatgaaatcttaaacattcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11725" stop="10250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11425" g_stop="10543" g_length="883"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="883" r_length="883" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726824" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11425" e_stop="10543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATT</genome_strand>
        <mrna_strand>GCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAAATGAAATCTTAAACATTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736282" ref_strand="+" ref_description="SGN-E736282 [LC05AC09]">
      <seq>aaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttacaacaacgcttgggctttcgccacaaactttgttcccggaaaatgaaaatcttaaacattcttaaaatttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11701" stop="10245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11401" g_stop="10546" g_length="856"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="856" polyA_stop="871"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E736282" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11401" e_stop="10546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTG</genome_strand>
        <mrna_strand>AAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTT-ACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730819" ref_strand="+" ref_description="SGN-E730819 [LA25BC01]">
      <seq>caatatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaaacgctgggctttccccacaaactttgttcccggaaaaatgaaaatcttaaacattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11715" stop="10255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11420" g_stop="10555" g_length="866"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="866" r_length="866" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730819" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11420" e_stop="10555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGG-AAAATGAAAATCTTAAACATTCT</genome_strand>
        <mrna_strand>CAA-TATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAAACGCTGGGCTTTCCCCACAAACTTTGTTCCCGGAAAAATGAAAATCTTAAACATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729823" ref_strand="+" ref_description="SGN-E729823 [LA22AH07]">
      <seq>cttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgttccgggaaaatgaaaatcttaaacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11723" stop="10256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11423" g_stop="10556" g_length="868"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="868" r_length="868" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729823" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11423" e_stop="10556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTC</genome_strand>
        <mrna_strand>CTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCGGGAAAATGAAAATCTTAAACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726764" ref_strand="+" ref_description="SGN-E726764 [LA12DA07]">
      <seq>aatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgcccacaactttgtttcccggaaaatgaaatcttaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11716" stop="10258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11416" g_stop="10558" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="859" r_length="859" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726764" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11416" e_stop="10558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTG-TTCCCGGAAAATGAAAATCTTAAACAT</genome_strand>
        <mrna_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCCACAACTTTGTTTCCCGGAAAATG-AAATCTTAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540572" ref_strand="+" ref_description="SGN-E540572 [TUS-60-O16]">
      <seq>ctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttacaacaacgcttgggctttcgcacaaactttgttcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11661" stop="10279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11361" g_stop="10579" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E540572" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11361" e_stop="10579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCG</genome_strand>
        <mrna_strand>CTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTT-ACAACAACGCTTGGGCTTTCG-CACAAACTTTGTTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731408" ref_strand="+" ref_description="SGN-E731408 [LA27AB05]">
      <seq>actataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcaaaccccgttaacaacaaccgcttgggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11706" stop="10299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11406" g_stop="10599" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="809" r_length="809" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731408" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11406" e_stop="10599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAA-CGCTTGGGCTTT</genome_strand>
        <mrna_strand>ACTATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAAACCCCGTTAACAACAACCGCTTGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726560" ref_strand="+" ref_description="SGN-E726560 [LA12AG02]">
      <seq>cgatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggatgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttacaacaacgcttgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11713" stop="10300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11415" g_stop="10600" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726560" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11415" e_stop="10600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTT</genome_strand>
        <mrna_strand>CGATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGATGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTT-ACAACAACGCTTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729859" ref_strand="+" ref_description="SGN-E729859 [LA22BC11]">
      <seq>ataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11703" stop="10302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11403" g_stop="10600" g_length="804"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729859" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11403" e_stop="10600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTT</genome_strand>
        <mrna_strand>ATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293005" ref_strand="+" ref_description="SGN-E293005 [cLET-12-J13]">
      <seq>aaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11389" stop="10302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11089" g_stop="10602" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293005" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11089" e_stop="10602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGC</genome_strand>
        <mrna_strand>AACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726566" ref_strand="+" ref_description="SGN-E726566 [LA12AG10]">
      <seq>cttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaaaggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgcttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11723" stop="10303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11423" g_stop="10603" g_length="821"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="821" r_length="821" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726566" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11423" e_stop="10603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGG</genome_strand>
        <mrna_strand>CTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAAGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728406" ref_strand="+" ref_description="SGN-E728406 [LA17CH06]">
      <seq>cacctttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaagccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaacccgttaacaacaacgcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11727" stop="10304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11427" g_stop="10604" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="824" r_length="824" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728406" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11427" e_stop="10604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGG</genome_strand>
        <mrna_strand>CACCTTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAAGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGAACCCGTTAACAACAACGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727465" ref_strand="+" ref_description="SGN-E727465 [LA14DB03]">
      <seq>cgcttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11723" stop="10308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11425" g_stop="10608" g_length="818"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="818" r_length="818" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727465" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11425" e_stop="10608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGC</genome_strand>
        <mrna_strand>CGCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287136" ref_strand="+" ref_description="SGN-E287136 [cLES-6-I16]">
      <seq>caagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcagaccccgttaacaacaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11549" stop="10308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11249" g_stop="10608" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E287136" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11249" e_stop="10608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGC</genome_strand>
        <mrna_strand>CAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728808" ref_strand="+" ref_description="SGN-E728808 [LA19AA10]">
      <seq>ctgctgcaatggctcttctcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcaagccattgttactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11661" stop="10364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11361" g_stop="10664" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728808" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11361" e_stop="10664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCAATGGCTCTT-TCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGA</genome_strand>
        <mrna_strand>CTGCTGCAATGGCTCTTCTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341867" ref_strand="+" ref_description="SGN-E341867 [cTOF-9-F24]">
      <seq>tttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgagggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttcctcgatgtttggatttcttcgttcaagccattgttaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11712" stop="10366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11412" g_stop="10666" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E341867" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11412" e_stop="10666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGA-GGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTT-CTCGATGTTTGGA-TTCTTCGTTCAAGCCATTGTTACTG</genome_strand>
        <mrna_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCCTCGATGTTTGGATTTCTTCGTTCAAGCCATTGTTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344460" ref_strand="+" ref_description="SGN-E344460 [cTOF-14-M20]">
      <seq>aatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctngagcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttcagccattgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11716" stop="10369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11416" g_stop="10669" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E344460" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11416" e_stop="10669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTA</genome_strand>
        <mrna_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTNGAGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTC-AGCCATTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344082" ref_strand="+" ref_description="SGN-E344082 [cTOF-12-L14]">
      <seq>tttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgagggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11712" stop="10381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11412" g_stop="10681" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E344082" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11412" e_stop="10681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGA-GGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTC</genome_strand>
        <mrna_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283890" ref_strand="+" ref_description="SGN-E283890 [cLER-13-C22]">
      <seq>ttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgtttggattcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11497" stop="10384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11197" g_stop="10684" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11197" e_stop="10684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCG</genome_strand>
        <mrna_strand>TTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727111" ref_strand="+" ref_description="SGN-E727111 [LA13DA11]">
      <seq>cgcatccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaagccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaaacgcagacttgctatgntctcgatgtttggattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11729" stop="10385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11429" g_stop="10685" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727111" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11429" e_stop="10685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTC</genome_strand>
        <mrna_strand>CGCATCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAAGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAAACGCAGACTTGCTATGNTCTCGATGTTTGGATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285252" ref_strand="+" ref_description="SGN-E285252 [cLER-20-L18]">
      <seq>gctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11629" stop="10396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11329" g_stop="10696" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11329" e_stop="10696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGT</genome_strand>
        <mrna_strand>GCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339311" ref_strand="+" ref_description="SGN-E339311 [cTOF-4-D4]">
      <seq>cccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaagtaaaggagattaagaacggcagacttgctatgttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11639" stop="10400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11339" g_stop="10700" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E339311" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11339" e_stop="10700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCG</genome_strand>
        <mrna_strand>CCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAA-GTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731104" ref_strand="+" ref_description="SGN-E731104 [LA26AF05]">
      <seq>atttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaagccttgctgaagaccctgaggcatttgccgagctncaggtaaaggagattaagaacggcagacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11713" stop="10409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11413" g_stop="10712" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731104" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11413" e_stop="10712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTT</genome_strand>
        <mrna_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAAGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTNCAGGTAAAGGAGATTAAGAACGGCAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288200" ref_strand="+" ref_description="SGN-E288200 [cLES-7-H8]">
      <seq>gcagctgctacaatggctctttcttccccttcatttctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaagcatttgctgagctcaaggtaaaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11665" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11365" g_stop="10728" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288200" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11365" e_stop="10728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGAT</genome_strand>
        <mrna_strand>GCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTT-CTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAAGCATTTGCTGAGCTCAAGGTAAAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291412" ref_strand="+" ref_description="SGN-E291412 [cLET-2-N4]">
      <seq>tgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgagttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11324" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11024" g_stop="10728" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E291412" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11024" e_stop="10728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGAT</genome_strand>
        <mrna_strand>TGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGAGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729182" ref_strand="+" ref_description="SGN-E729182 [LA20BA05]">
      <seq>atttaataccataaaatactcaacacttttctcttaatataaatcatgacagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11713" stop="10432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11413" g_stop="10732" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729182" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11413" e_stop="10732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGG</genome_strand>
        <mrna_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGACAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390757" ref_strand="+" ref_description="SGN-E390757 [TUS-47-K11]">
      <seq>ttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccgagctcaaggtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11722" stop="10434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11422" g_stop="10733" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E390757" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11422" e_stop="10733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAG</genome_strand>
        <mrna_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342034" ref_strand="+" ref_description="SGN-E342034 [cTOF-10-F3]">
      <seq>taaaatactcaacacctttctcttatataaatcactggcagctgctgcaatggctctttcttcccccttcatttgctggacaggcagtcaaacctctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaaggttgtcgacccactctacccccgtggcagcttcgacccattangccttgctgaagaaccctgagcatttgccgagctcaaggtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11702" stop="10434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11402" g_stop="10734" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342034" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11402" e_stop="10734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATACTCAACACTTTTCTCTTAATATAAATCA-TGGCAGCTGCTGCAATGGCTCTTTCTT-CCCCTTCATTTGCTGGACAGGCAGTCAAA-CTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTG-AGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAG-ACCCTGAGGCATTTGCCGAGCTCAAGGTAAA</genome_strand>
        <mrna_strand>TAAAATACTCAACACCTTTCTCTT-ATATAAATCACTGGCAGCTGCTGCAATGGCTCTTTCTTCCCCCTTCATTTGCTGGACAGGCAGTCAAACCTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAAGGTTGTCGACCCACTCTACCCCCGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGAACCCTGA-GCATTTGCCGAGCTCAAGGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343057" ref_strand="+" ref_description="SGN-E343057 [cTOF-11-K18]">
      <seq>agccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttngtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaaggntgtcgacccactctacccccgtggcagcttcgacccattangccttgctgaagaccctgaggcatttgccgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11726" stop="10442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11426" g_stop="10742" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343057" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11426" e_stop="10742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTT-GTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGA-GGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTC</genome_strand>
        <mrna_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTNGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAAGGNTGTCGACCCACTCTACCCCCGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343052" ref_strand="+" ref_description="SGN-E343052 [cTOF-11-I18]">
      <seq>agccttcacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggctttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgagggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccctgagcatttgccgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11726" stop="10443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11426" g_stop="10743" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343052" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11426" e_stop="10743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC-TTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGA-GGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCT</genome_strand>
        <mrna_strand>AGCCTTC-ACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCTGAGCATTTGCCGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730828" ref_strand="+" ref_description="SGN-E730828 [LA25BC11]">
      <seq>catttaatactcaacactatttctcttaatataaatcatggcagctgctgcaatggactttttcttccccttcatttgctggacaggcactcaaactctcaccatctgcctcacaaaattctggaaatggaaggatcactatgataaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgggttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgatacctttgccaagaaccgtgaacttgaagtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggagtaaagtttggtgaggctgtgtggatcaaggccggatcccatatcttcaccgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggataccgcattgctggtggacctcttggagaggatgtcgacccactctaccccggtggcagcttccacccattaggccttgctgaacaccctgatgcatttgccgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11704" stop="10443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11404" g_stop="10743" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730828" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11404" e_stop="10743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAAATACTCAACACT-TTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGG-CTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCT</genome_strand>
        <mrna_strand>CATTTAATACTCAACACTATTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGACTTTTTCTTCCCCTTCATTTGCTGGACAGGCACTCAAACTCTCACCATCTGCCTCACAAAATTCTGGAAATGGAAGGATCACTATGATAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGGGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGATACCTTTGCCAAGAACCGTGAACTTGAAGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGAGTAAAGTTTGGTGAGGCTGTGTGGATCAAGGCCGGATCCCATATCTTCACCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGATACCGCATTGCTGGTGGACCTCTTGGAGAGGATGTCGACCCACTCTACCCCGGTGGCAGCTTCCACCCATTAGGCCTTGCTGAACACCCTGATGCATTTGCCGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730259" ref_strand="+" ref_description="SGN-E730259 [LA23CC12]">
      <seq>taccataaaatactcaacacttttctcttatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccctgaggcatttgccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11707" stop="10446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11407" g_stop="10746" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730259" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11407" e_stop="10746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGA</genome_strand>
        <mrna_strand>TACCATAAAATACTCAACACTTTTCTCTT-ATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465015" ref_strand="+" ref_description="SGN-E465015 [cPRO-19-H22]">
      <seq>atttcataccatcaaacactcaacacttttctcttaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacagtcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactatggatgggataccgctggactttcagcagaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtattgatgggagccgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgaaccattangtcttgctgaagacccagaggcatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11713" stop="10447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11413" g_stop="10747" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E465015" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11413" e_stop="10747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCG</genome_strand>
        <mrna_strand>ATTTCATACCATCAAACACTCAACACTTTTCTCTTAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGTCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTATTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGAACCATTANGTCTTGCTGAAGACCCAGAGGCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726333" ref_strand="+" ref_description="SGN-E726333 [LA11CB02]">
      <seq>cgcagccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgacgttgtcgacccactctacccccggtggcagcttcgacccattaagccttgctgaagaccctgaggcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11729" stop="10450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11429" g_stop="10750" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726333" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11429" e_stop="10750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTA-CCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTG</genome_strand>
        <mrna_strand>CGCAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGACGTTGTCGACCCACTCTACCCCCGGTGGCAGCTTCGACCCATTAAGCCTTGCTGAAGACCCTGAGGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344338" ref_strand="+" ref_description="SGN-E344338 [cTOF-16-L19]">
      <seq>agccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattangccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11726" stop="10467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11426" g_stop="10767" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E344338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11426" e_stop="10767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGA</genome_strand>
        <mrna_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTANGCCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280554" ref_strand="+" ref_description="SGN-E280554 [cLER-1-G24]">
      <seq>aacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11719" stop="10468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11419" g_stop="10768" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11419" e_stop="10768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTG</genome_strand>
        <mrna_strand>AACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727972" ref_strand="+" ref_description="SGN-E727972 [LA16BC01]">
      <seq>caacatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattangccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11717" stop="10468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11417" g_stop="10768" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727972" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11417" e_stop="10768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTG</genome_strand>
        <mrna_strand>CAACATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTANGCCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285294" ref_strand="+" ref_description="SGN-E285294 [cLER-20-K7]">
      <seq>ataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11708" stop="10468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11408" g_stop="10768" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11408" e_stop="10768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTG</genome_strand>
        <mrna_strand>ATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729270" ref_strand="+" ref_description="SGN-E729270 [LA20CB08]">
      <seq>acaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11718" stop="10479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11418" g_stop="10779" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11418" e_stop="10779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATT</genome_strand>
        <mrna_strand>ACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291339" ref_strand="+" ref_description="SGN-E291339 [cLET-2-M18]">
      <seq>tgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11660" stop="10480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11360" g_stop="10780" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E291339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11360" e_stop="10780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCAT</genome_strand>
        <mrna_strand>TGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315390" ref_strand="+" ref_description="SGN-E315390 [cTOA-22-I21]">
      <seq>tttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccacaacggtgtaaagtttggtgaggctgtgtggttcaaagccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaacgtaccgcattgctggtggacctcttggtgaagttgtcgacccactctaccccggtggcagcttcgaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11712" stop="10481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11412" g_stop="10781" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E315390" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11412" e_stop="10781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCA</genome_strand>
        <mrna_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCACAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAAGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAACG-TACCGCATTGCTGGTGGACCTCTTGGTGAAGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728722" ref_strand="+" ref_description="SGN-E728722 [LA18DA03]">
      <seq>aattactcaacacttttctcttatataaatcatggcagctgctgcaatggctctttcttccccttatttgctggagaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11700" stop="10484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11400" g_stop="10784" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728722" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11400" e_stop="10784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGAC</genome_strand>
        <mrna_strand>AATTACTCAACACTTTTCTCTT-ATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTT-ATTTGCTGGAGAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728787" ref_strand="+" ref_description="SGN-E728787 [LA18DG11]">
      <seq>ttaataccataaaatacccaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcgtttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggagcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttggtgaggatgtcgacccactctaccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11711" stop="10498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11411" g_stop="10798" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728787" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11411" e_stop="10798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCG</genome_strand>
        <mrna_strand>TTAATACCATAAAATACCCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCGTTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGAGCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGATGTCGACCCACTCTACCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342467" ref_strand="+" ref_description="SGN-E342467 [cTOF-8-O6]">
      <seq>tttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11712" stop="10524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11412" g_stop="10824" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11412" e_stop="10824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGG</genome_strand>
        <mrna_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343389" ref_strand="+" ref_description="SGN-E343389 [cTOF-19-G8]">
      <seq>acaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11718" stop="10525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11418" g_stop="10825" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11418" e_stop="10825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTG</genome_strand>
        <mrna_strand>ACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328859" ref_strand="+" ref_description="SGN-E328859 [cTOC-24-A10]">
      <seq>atatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggtggacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11715" stop="10527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11415" g_stop="10827" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E328859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11415" e_stop="10827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCT</genome_strand>
        <mrna_strand>ATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401787" ref_strand="+" ref_description="SGN-E401787 [PPC-5-E22]">
      <seq>ctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagtggtattgatggnagccgttgagggttaccgtattgctggtggacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11661" stop="10528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11361" g_stop="10828" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E401787" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11361" e_stop="10828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTC</genome_strand>
        <mrna_strand>CTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTGGTATTGATGGNAGCCGTTGAGGGTTACCGTATTGCTGGTGGACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340153" ref_strand="+" ref_description="SGN-E340153 [cTOF-2-I23]">
      <seq>aatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatgggagccgttgaaggttaccgcattgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11716" stop="10535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11416" g_stop="10835" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11416" e_stop="10835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGT</genome_strand>
        <mrna_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300588" ref_strand="+" ref_description="SGN-E300588 [cLET-45-I22]">
      <seq>aaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11668" stop="10560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11370" g_stop="10859" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E300588" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11370" e_stop="10859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCC</genome_strand>
        <mrna_strand>AAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574664" ref_strand="+" ref_description="SGN-E574664 [34168]">
      <seq>aaacacttacttttctcttaatataaaataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccgtctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaagtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggctggatctcagatcttcagtgaaggtggacttgactacttgggtaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtgttaatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11689" stop="5821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11361" g_stop="10859" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="546" r_length="503" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E574664" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11361" e_stop="10859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCC</genome_strand>
        <mrna_strand>CTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAAGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGATCTCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTAATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285831" ref_strand="+" ref_description="SGN-E285831 [cLES-5-P17]">
      <seq>ctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11661" stop="10560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11361" g_stop="10859" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285831" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11361" e_stop="10859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCC</genome_strand>
        <mrna_strand>CTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298530" ref_strand="+" ref_description="SGN-E298530 [cLET-41-D5]">
      <seq>tgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaaacatcttggccatctgggcttgtcaagttgtgttgatgggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11657" stop="10559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11357" g_stop="10859" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E298530" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11357" e_stop="10859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCC</genome_strand>
        <mrna_strand>TGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAACATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283327" ref_strand="+" ref_description="SGN-E283327 [cLER-12-J20]">
      <seq>aatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11716" stop="10562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11416" g_stop="10862" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11416" e_stop="10862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGA</genome_strand>
        <mrna_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406144" ref_strand="+" ref_description="SGN-E406144 [PPI-2-L6]">
      <seq>cgaggccttcaacaatatttcactacccatcaaaccctcaacccttttctcttaatctaaaatcaatggcagctgctacaatggctctttcttccccttcttttgctggacagtcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactatggatgggataccgctggactttcagcagaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtattgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11725" stop="10563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11429" g_stop="10863" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E406144" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11429" e_stop="10863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCTTCAACAATATTT-AATA-CCATAAAATACTCAACACTTTTCTCTTAATAT-AAATC-ATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAG-AAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGG</genome_strand>
        <mrna_strand>CGAGGCCTTCAACAATATTTCACTACCCATCAAACCCTCAACCCTTTTCTCTTAATCTAAAATCAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGTCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTATTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347415" ref_strand="+" ref_description="SGN-E347415 [cTOF-33-G3]">
      <seq>agccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11726" stop="10563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11426" g_stop="10863" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347415" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11426" e_stop="10863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGG</genome_strand>
        <mrna_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362675" ref_strand="+" ref_description="SGN-E362675 [cLPP-1-K11]">
      <seq>ttcaacaatatttcataccatcaaacactcaacacttttctcttaaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagtggtattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11722" stop="10565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11422" g_stop="10865" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E362675" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11422" e_stop="10865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTT-AATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATG</genome_strand>
        <mrna_strand>TTCAACAATATTTCATACCATCAAACACTCAACACTTTTCTCTTAAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTGGTATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319631" ref_strand="+" ref_description="SGN-E319631 [cTOB-12-M3]">
      <seq>tttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11712" stop="10565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11412" g_stop="10865" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E319631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11412" e_stop="10865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATG</genome_strand>
        <mrna_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285054" ref_strand="+" ref_description="SGN-E285054 [cLER-19-D8]">
      <seq>cataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11704" stop="10565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11404" g_stop="10865" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11404" e_stop="10865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATG</genome_strand>
        <mrna_strand>CATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412405" ref_strand="+" ref_description="SGN-E412405 [STM-16-A8]">
      <seq>atttcgtaccatcaaacactcaacacttttctcttaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagcagaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagttcggcgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatttgggcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11713" stop="10581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11413" g_stop="10881" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E412405" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11413" e_stop="10881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTG</genome_strand>
        <mrna_strand>ATTTCGTACCATCAAACACTCAACACTTTTCTCTTAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTCGGCGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATTTGGGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318294" ref_strand="+" ref_description="SGN-E318294 [cTOA-29-P3]">
      <seq>tttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11712" stop="10582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11412" g_stop="10882" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E318294" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11412" e_stop="10882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTT</genome_strand>
        <mrna_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285376" ref_strand="+" ref_description="SGN-E285376 [cLER-20-N17]">
      <seq>ataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaagtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11668" stop="10582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11361" g_stop="10882" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="497" r_length="480" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285376" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11361" e_stop="10882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTT</genome_strand>
        <mrna_strand>CTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAAGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295545" ref_strand="+" ref_description="SGN-E295545 [cLET-23-J9]">
      <seq>ttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11722" stop="10583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11422" g_stop="10883" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11422" e_stop="10883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCT</genome_strand>
        <mrna_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283549" ref_strand="+" ref_description="SGN-E283549 [cLER-12-B6]">
      <seq>caacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactaccgctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggttcatgcacaaagcatcttggccatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11720" stop="10584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11420" g_stop="10884" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283549" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11420" e_stop="10884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC</genome_strand>
        <mrna_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACCGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277437" ref_strand="+" ref_description="SGN-E277437 [cLER-3-L5]">
      <seq>aaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11701" stop="10584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11401" g_stop="10884" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11401" e_stop="10884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC</genome_strand>
        <mrna_strand>AAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471119" ref_strand="+" ref_description="SGN-E471119 [cSTB-22-D5]">
      <seq>acactcaacacttttctcttaaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11698" stop="10584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11398" g_stop="10884" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E471119" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11398" e_stop="10884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTCAACACTTTTCTCTT-AATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC</genome_strand>
        <mrna_strand>ACACTCAACACTTTTCTCTTAAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288519" ref_strand="+" ref_description="SGN-E288519 [cLES-8-D20]">
      <seq>aacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11668" stop="10584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11361" g_stop="10884" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="492" r_length="478" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288519" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11361" e_stop="10884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC</genome_strand>
        <mrna_strand>CTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725873" ref_strand="+" ref_description="SGN-E725873 [LA08CD05]">
      <seq>caacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcacnggtgtaaaggttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11720" stop="10595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11420" g_stop="10895" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725873" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11420" e_stop="10895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTG</genome_strand>
        <mrna_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCACNGGTGTAAAGGTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284056" ref_strand="+" ref_description="SGN-E284056 [cLER-13-A12]">
      <seq>ataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11708" stop="10596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11408" g_stop="10896" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11408" e_stop="10896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTT</genome_strand>
        <mrna_strand>ATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324619" ref_strand="+" ref_description="SGN-E324619 [cTOC-9-M1]">
      <seq>ccataaaatactcaacacttttctcttaatataaatcatggcacctgctgcaacggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaaatacttgggaccattctctggtgagttcccaagctacttgactggcgaattccctggtgactactgctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttcatgtgatccactgcacatgggctatgcttggtgctctcggatgtgtctttcctgagctcttggcccacaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11705" stop="10596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11405" g_stop="10896" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E324619" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11405" e_stop="10896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTT</genome_strand>
        <mrna_strand>CCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCACCTGCTGCAACGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAATACTTGGGACCATTCTCTGGTGAGTTCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACTGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTCATGTGATCCACTGCACATGGGCTATGCTTGGTGCTCTCGGATGTGTCTTTCCTGAGCTCTTGGCCCACAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313739" ref_strand="+" ref_description="SGN-E313739 [cTOA-17-M12]">
      <seq>tttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11712" stop="10598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11412" g_stop="10898" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E313739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11412" e_stop="10898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATC</genome_strand>
        <mrna_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288731" ref_strand="+" ref_description="SGN-E288731 [cLES-8-F12]">
      <seq>tgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11657" stop="10598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11357" g_stop="10898" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11357" e_stop="10898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATC</genome_strand>
        <mrna_strand>TGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725491" ref_strand="+" ref_description="SGN-E725491 [LA03DB09]">
      <seq>caatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtactttgggaccactctctggtgagtccccaagctacttgactggcgaattcccttggtgactacggctgggataccgctggacttttcagctgacccttgagaccttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgnngcacccaagcttggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11717" stop="10631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11417" g_stop="10913" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725491" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11417" e_stop="10913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTAC-TTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCC-TGGTGACTACGGCTGGGATACCGCTGGAC-TTTCAGCTGACCC-TGAGACCTTT-GCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTC</genome_strand>
        <mrna_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTTGGGACCACTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTTGGTGACTACGGCTGGGATACCGCTGGACTTTTCAGCTGACCCTTGAGACCTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGNNGCACCCAAGCTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283873" ref_strand="+" ref_description="SGN-E283873 [cLER-13-M15]">
      <seq>ccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11705" stop="10623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11405" g_stop="10923" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11405" e_stop="10923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCC</genome_strand>
        <mrna_strand>CCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289148" ref_strand="+" ref_description="SGN-E289148 [cLES-18-L1]">
      <seq>ataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttggggccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctctcggcccgcaacggtgtaaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11708" stop="10629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11408" g_stop="10929" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289148" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11408" e_stop="10929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGG</genome_strand>
        <mrna_strand>ATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGGCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTCGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287745" ref_strand="+" ref_description="SGN-E287745 [cLES-9-N22]">
      <seq>atactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcaccccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaacggtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11698" stop="10700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11398" g_stop="11000" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E287745" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11398" e_stop="11000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTA</genome_strand>
        <mrna_strand>ATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCACCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299452" ref_strand="+" ref_description="SGN-E299452 [cLET-43-N1]">
      <seq>aacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactttcagctgaccctgagctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctcttggcccgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11719" stop="10706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11419" g_stop="11006" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E299452" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11419" e_stop="11006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAAC</genome_strand>
        <mrna_strand>AACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAG--CTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293022" ref_strand="+" ref_description="SGN-E293022 [cLET-12-J6]">
      <seq>ccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactactgctgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtctttcctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11527" stop="10717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11227" g_stop="11017" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293022" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11227" e_stop="11017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCT</genome_strand>
        <mrna_strand>CCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACTGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472949" ref_strand="+" ref_description="SGN-E472949 [cSTB-30-D13]">
      <seq>gctggacaggcagcgaaactatcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctcggcgctattccgccccatctagcaccccatgggatggccctgaccgtgttaagtacttgggcccattctatggcgagtccccaagctactagactggcgaattccctggtgactatggatcggataccgctggactttcaccagaccctgaaacctttgccaagaaccatgaacttgaggtgatccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11629" stop="10764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11329" g_stop="11064" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E472949" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11329" e_stop="11064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCT-GTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTG</genome_strand>
        <mrna_strand>GCTGGACAGGCAGCGAAACTATCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTCGGCG-CTATTCCGCCCCATCTAGCACCCCATGGGATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTATGGCGAGTCCCCAAGCTACTAGACTGGCGAATTCCCTGGTGACTATGGATCGGATACCGCTGGACTTTCACCAGACCCTGAAACCTTTGCCAAGAACCATGAACTTGAGGTGATCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280621" ref_strand="+" ref_description="SGN-E280621 [cLER-1-P3]">
      <seq>tttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11712" stop="10816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11412" g_stop="11116" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11412" e_stop="11116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTT</genome_strand>
        <mrna_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312019" ref_strand="+" ref_description="SGN-E312019 [cTOA-16-J20]">
      <seq>ttcaacaatatgggataccatgaaatactcaacactcctctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagacaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggaatggccctgaccgtgttaagtacttgggaccattctctggtgagtacccaagctacttgactggcaaaacccctggtgactacagctgggataccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11708" stop="10824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11422" g_stop="11124" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E312019" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11422" e_stop="11124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGC</genome_strand>
        <mrna_strand>TTCAACAATATGGGATACCATGAAATACTCAACACTCCTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGACAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGAATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTACCCAAGCTACTTGACTGGCAAAACCCCTGGTGACTACAGCTGGGATACCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280677" ref_strand="+" ref_description="SGN-E280677 [cLEL-6-C22](-)">
      <seq>tagtcaccagggaattcgccagtcaagtagcttggggactcaccagagaatggtcccaagtacttaacacggtcagggccataccatgggctgctagatggggcagacttggcgacagcctttctcatagtgatccttccatttccagaattttctgaggcagatggtgagagtttgactgcctgtccagcaaatgagggggaagaaagagccattgcagcagctgccatgatttatattaagagaaaagtgttgagtattttatggtattaaatctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="10839" stop="11718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11139" g_stop="11420" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E280677" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11139" e_stop="11420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCACCAGGGAATTCGCCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAATTTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGCAGCAGCTGCCATGATTTATATTAAGAGAAAAGTGTTGAGTATTTTATGGTATTAAATATTGTTG</genome_strand>
        <mrna_strand>TAGTCACCAGGGAATTCGCCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAATTTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAGGGGGAAGAAAGAGCCATTGCAGCAGCTGCCATGATTTATATTAAGAGAAAAGTGTTGAGTATTTTATGGTATTAAATCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289242" ref_strand="+" ref_description="SGN-E289242 [cLES-18-A12]">
      <seq>taataccataaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11710" stop="10890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11410" g_stop="11190" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11410" e_stop="11190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACC</genome_strand>
        <mrna_strand>TAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471947" ref_strand="+" ref_description="SGN-E471947 [cSTB-26-D4]">
      <seq>caacattattccataccatcgaacactcaacactttcctcttgaatctaaatcatggcagctggtccaatggctctttcttacccttcttttgctggacaggcagtgaaactttcaccatctgcctcaaaaattcctggaaatggaaggatcactatgaaaaaggctgtcgccaagtctgccccatctagcaccccatggtatggccctgaccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11720" stop="10907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11420" g_stop="11207" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E471947" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11420" e_stop="11207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTT-AATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGT</genome_strand>
        <mrna_strand>CAACATTATTCCATACCATCGAACACTCAACACTTTCCTCTTGAATCTAAATCATGGCAGCTGGTCCAATGGCTCTTTCTTACCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAAAAATTCCTGGAAATGGAAGGATCACTATGAAAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCACCCCATGGTATGGCCCTGACCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319105" ref_strand="+" ref_description="SGN-E319105 [cTOB-16-A5]">
      <seq>aaaatactcaacacttttctcttaatataaatcatggcagctgctgcaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcacaaaattctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctatcatcccatggtatggccctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="11701" stop="10910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11401" g_stop="11210" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E319105" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11401" e_stop="11210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGAC</genome_strand>
        <mrna_strand>AAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCACAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTATCATCCCATGGTATGGCCCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739125" ref_strand="+" ref_description="SGN-E739125 [LC16AH04]">
      <seq>cgctaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaatatttcaatgtttgtgtagtactgagtaacatcttactaagctatgaatcaaatgttgccacttttcatacaaaggataaatcaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13994" stop="12539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13694" g_stop="12839" g_length="856"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="856" r_length="856" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E739125" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13694" e_stop="12839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAGGATAATCAAAGAAAGAGAACA</genome_strand>
        <mrna_strand>CGCTAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTTCATACAAAGGATAAATCAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738242" ref_strand="+" ref_description="SGN-E738242 [LC12DF08]">
      <seq>cgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaatatttcaatgtttgtgtagtactgagtaacatcttactaagctatgaatcaaatgttgccactttcataacaaaggataatcaaagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13994" stop="12541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13694" g_stop="12840" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E738242" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13694" e_stop="12840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAGGATAATCAAAGAAAGAGAAC</genome_strand>
        <mrna_strand>CGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAGGATAATCAAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698735" ref_strand="+" ref_description="SGN-E698735 [FA07BG04]">
      <seq>cgcagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaacttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaaagaatagtgagttacttgacaatagaatgaattgttttccttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14151" stop="12633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13853" g_stop="12936" g_length="918"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="918" r_length="918" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12935" i_stop="12860" i_length="76">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.612" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12859" g_stop="12846" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="919" r_stop="932" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E698735" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>932</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13853" e_stop="12936"/>
          <exon e_start="12859" e_stop="12846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAGGATAATCAAAGAAA</genome_strand>
        <mrna_strand>CGCAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAAACTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAAGAATAGTGAGTTACTTGACAATAGAATGAATTGTTTTCCTTAA............................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288251" ref_strand="+" ref_description="SGN-E288251 [cLES-16-K17]">
      <seq>ttttttttttttttttatgaaagtggcaacatttgattcatagcttaataagatgttactcagtactacacaaacattgaaatattaaagaaaaacaatccattctattgtcaagtaactcactactactttacaaggaatattaagattgtttaaaaagtttcattttccggggacaaagtttgtggcaaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaatagcttgaacaaagaatccgaacatagagaacatagcaagtctaccgttcttgatctcctttaccttgagctcagcaaatgcctctgggtcttcagcaagacccagtgggtcgaagctgccaccagggtagagtgggtcgacaacctcaccaagagggccaccagcaatacggtaaccttcaacggctcccatgagtacaacttggcaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccctcactgaagatttgggatccagctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="12551" stop="13719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12851" g_stop="13419" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E288251" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12851" e_stop="13419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTATCCTTTGTTATGAAAGTGGCAACATTTGATTCATAGCTTAGTAAGATGTTACTCAGTACTACACAAACATTGAAATATTAAAGAAAAACAATCCATTCTATTGTCAAGTAACTCACTACTACTTTACAAGGAATATTAAGATTGTTTAAAAAGTTTCATTTTCCGGGGACAAAGTTTGTGGCAAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATAGCTTGAACGAAGAATCCGAACATAGAGAACATGGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGACCCAGTGGGTCGAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGGCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGGGATCCAGCTTTGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTATGAAAGTGGCAACATTTGATTCATAGCTTAATAAGATGTTACTCAGTACTACACAAACATTGAAATATTAAAGAAAAACAATCCATTCTATTGTCAAGTAACTCACTACTACTTTACAAGGAATATTAAGATTGTTTAAAAAGTTTCATTTTCCGGGGACAAAGTTTGTGGCAAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATAGCTTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGACCCAGTGGGTCGAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGGCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGGGATCCAGCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739797" ref_strand="+" ref_description="SGN-E739797 [LC18DF07]">
      <seq>ggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaatatttcaatgtttgtgtagtactgagtaacatcttactaagctatgaatcaaatgttgccactttcataacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14060" stop="12555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13760" g_stop="12854" g_length="907"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="907" r_length="907" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E739797" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13760" e_stop="12854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAGGATAAT</genome_strand>
        <mrna_strand>GGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727496" ref_strand="+" ref_description="SGN-E727496 [LA14DE05]">
      <seq>caaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaaatgaactttttaaacaatcttaatattccctgtaaagtagtagtgaggtacttgacaatagaatggattgtttttctttaatatttcaatgtttgtgtagtactgaagtacatcttactaagctatgaatcaaatgttgccactttcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14142" stop="12555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13842" g_stop="12855" g_length="988"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="988" r_length="988" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727496" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>988</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13842" e_stop="12855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAGGATAA</genome_strand>
        <mrna_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAAATGAACTTTTTAAACAATCTTAATATTCCCTGTAAAGTAGTAGTGAGGTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAAGTACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300373" ref_strand="+" ref_description="SGN-E300373 [cLET-45-C5]">
      <seq>ttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgttcggattctttgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattggttttctttaatatttcaatgtttgtgtagtactgagtaacatcttattaagctatgaatcaaatgttgccactttcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13771" stop="12555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13471" g_stop="12855" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E300373" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13471" e_stop="12855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAGGATAA</genome_strand>
        <mrna_strand>TTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGGTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTATTAAGCTATGAATCAAATGTTGCCACTTTCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373581" ref_strand="+" ref_description="SGN-E373581 [TUS-33-C4]">
      <seq>ttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgttcggattctttgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaatatttcaatgtttgtgtagtactgagtaacatcttattaagctatgaatcaaatgttgccactttcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13771" stop="12555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13471" g_stop="12855" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E373581" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13471" e_stop="12855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAGGATAA</genome_strand>
        <mrna_strand>TTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTATTAAGCTATGAATCAAATGTTGCCACTTTCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373580" ref_strand="+" ref_description="SGN-E373580 [TUS-33-C4](-)">
      <seq>cttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgttcggattctttgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaatatttcaatgtttgtgtagtactgagtaacatcttattaagctatgaatcaaatgttgccactttcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13772" stop="12555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13472" g_stop="12856" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E373580" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13472" e_stop="12856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAGGATA</genome_strand>
        <mrna_strand>CTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTATTAAGCTATGAATCAAATGTTGCCACTTTCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726501" ref_strand="+" ref_description="SGN-E726501 [LA12AA02]">
      <seq>catcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaacttttttaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttatatttcaatggttgtgtagtactgagtaacatcttactaacctatgaatcaaatgttgccactttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14145" stop="12561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13845" g_stop="12862" g_length="984"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="983" r_length="983" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726501" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>984</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13845" e_stop="12862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAA</genome_strand>
        <mrna_strand>CATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTTAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTT-ATATTTCAATGGTTGTGTAGTACTGAGTAACATCTTACTAACCTATGAATCAAATGTTGCCACTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282101" ref_strand="+" ref_description="SGN-E282101 [cLES-4-E21]">
      <seq>acatttgattcatagcttaataagatgttactcagtactacacaaacattgaaatattaaagaaaaacaatccattctattgtcaagtaactcactactactttacaaggaatattaagattgtttaaaaagtttcattttccggggacaaagtttgtggcaaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaatagcttgaacaaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="12579" stop="13433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12879" g_stop="13133" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E282101" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12879" e_stop="13133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTGATTCATAGCTTAGTAAGATGTTACTCAGTACTACACAAACATTGAAATATTAAAGAAAAACAATCCATTCTATTGTCAAGTAACTCACTACTACTTTACAAGGAATATTAAGATTGTTTAAAAAGTTTCATTTTCCGGGGACAAAGTTTGTGGCAAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATAGCTTGAACGAAGAAT</genome_strand>
        <mrna_strand>ACATTTGATTCATAGCTTAATAAGATGTTACTCAGTACTACACAAACATTGAAATATTAAAGAAAAACAATCCATTCTATTGTCAAGTAACTCACTACTACTTTACAAGGAATATTAAGATTGTTTAAAAAGTTTCATTTTCCGGGGACAAAGTTTGTGGCAAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATAGCTTGAACAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283279" ref_strand="-" ref_description="SGN-E283279 [cLER-12-E12]">
      <seq>ggcaacccaagcttggtccatgcacaaagcattttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgttcggattctttgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaatatttcaatgtttgtgtaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13672" stop="12617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13372" g_stop="12917" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="476"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283279" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283279" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13372" e_stop="12917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTA</genome_strand>
        <mrna_strand>GGCAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727149" ref_strand="+" ref_description="SGN-E727149 [LA13DE06]">
      <seq>accaacttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaacttttaaaacatcttaatattcccttgtaagaagtagtgagttacttgacaataaaatggaatgtttttctttaatatttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14162" stop="12627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13862" g_stop="12920" g_length="943"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="942" r_length="942" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727149" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>943</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13862" e_stop="12920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGT</genome_strand>
        <mrna_strand>ACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTAAAAC-ATCTTAATATTCCCTTGTAAGAAGTAGTGAGTTACTTGACAATAAAATGGAATGTTTTTCTTTAATATTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730179" ref_strand="+" ref_description="SGN-E730179 [LA23BC07]">
      <seq>catcacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaaggggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacacgcttgggcttttgccacaaactttgtccccggaaaatgcaactttttaaacaatcttaatattccttgtaaaggaatatggagttacttggacataaaaatggattgcttttcctttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14140" stop="12633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13841" g_stop="12925" g_length="917"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="919" r_length="919" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730179" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13841" e_stop="12925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAA-GGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTT-GACAATAGAATGGATTG-TTTTTCTTTAATATTTCAATG</genome_strand>
        <mrna_strand>CATCACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAAC-ACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGCAACTTTTTAAACAATCTTAATATTCCTTGTAAAGGAATATGGAGTTACTTGGACATAAAAATGGATTGCTTTTCCTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730311" ref_strand="+" ref_description="SGN-E730311 [LA23DA03]">
      <seq>ccctactagtaacggcgtcaagttcggtgaggctgtgtggttccatgctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaatatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13755" stop="12627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13460" g_stop="12928" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="546"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730311" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13460" e_stop="12928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCA</genome_strand>
        <mrna_strand>CCCTACTAGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCCATGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734698" ref_strand="+" ref_description="SGN-E734698 [LB13BD10]">
      <seq>gtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttgcgccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaatatttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13724" stop="12627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13424" g_stop="12928" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="513"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734698" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13424" e_stop="12928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTG-GCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCA</genome_strand>
        <mrna_strand>GTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGCGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726580" ref_strand="+" ref_description="SGN-E726580 [LA12BA02]">
      <seq>caaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaatgaaactttttaaacaatcttaatattccttgtnaagtagtagtgagttacttgacaatagaatggattgtttttctttaataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14142" stop="12633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13842" g_stop="12934" g_length="909"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="908" r_length="908" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="909" polyA_stop="928"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726580" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13842" e_stop="12934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAAT</genome_strand>
        <mrna_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGG-AAATGAAACTTTTTAAACAATCTTAATATTCCTTGTNAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737905" ref_strand="+" ref_description="SGN-E737905 [LC11CF07]">
      <seq>caaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaactgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactatttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaaacacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgttttttctttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14142" stop="12633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13842" g_stop="12936" g_length="907"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="907" r_length="907" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="908" polyA_stop="920"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E737905" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13842" e_stop="12936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTG-TTTTTCTTTA</genome_strand>
        <mrna_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACTGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTATTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAAACACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTT-AACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539906" ref_strand="+" ref_description="SGN-E539906 [TUS-59-O14](-)">
      <seq>caccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgttcggattctttgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13917" stop="12633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13617" g_stop="12936" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="683" polyA_stop="701"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E539906" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13617" e_stop="12936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTA</genome_strand>
        <mrna_strand>CACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735101" ref_strand="+" ref_description="SGN-E735101 [LB14BG07]">
      <seq>cgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaaaaaaaaaaaaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13828" stop="12633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13528" g_stop="12936" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="606"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E735101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13528" e_stop="12936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTA</genome_strand>
        <mrna_strand>CGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347005" ref_strand="+" ref_description="SGN-E347005 [cTOF-25-E12]">
      <seq>ttggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgttcggattctttgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13759" stop="12633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13459" g_stop="12936" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="550"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347005" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13459" e_stop="12936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTA</genome_strand>
        <mrna_strand>TTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227381" ref_strand="+" ref_description="SGN-E227381 [cLEL-30-C18](-)">
      <seq>tattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgttcggattctttgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagcatggattgtttttctttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13586" stop="12633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13286" g_stop="12936" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="372"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E227381" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13286" e_stop="12936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTA</genome_strand>
        <mrna_strand>TATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGCATGGATTGTTTTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728521" ref_strand="+" ref_description="SGN-E728521 [LA18AD06]">
      <seq>caacttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaaactttttaacaatcttaatattccttgtaaagtagtagtgagttacttgacaatagaatggattgtttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14160" stop="12638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13860" g_stop="12938" g_length="923"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="923" r_length="923" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728521" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>923</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13860" e_stop="12938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTT</genome_strand>
        <mrna_strand>CAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAAACTTTTTAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733760" ref_strand="+" ref_description="SGN-E733760 [LB10DE03]">
      <seq>cgcttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaaacacaacgcttgnngcttttgccacaactttgtccccggaaaatgaaactttttaaacaaatctaatattccttgtnaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14157" stop="12677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13859" g_stop="12968" g_length="892"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="892" r_length="892" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733760" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13859" e_stop="12968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTG-GGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGT</genome_strand>
        <mrna_strand>CGCTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAAACACAACGCTTGNNGCTTTTGCCAC-AACTTTGTCCCCGGAAAATGAAACTTTTTAAACAAATCTAATATTCCTTGTNAAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736992" ref_strand="+" ref_description="SGN-E736992 [LC08AD02]">
      <seq>gtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatatcccttgtaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14149" stop="12678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13849" g_stop="12978" g_length="872"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="872" r_length="872" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E736992" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13849" e_stop="12978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGT</genome_strand>
        <mrna_strand>GTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATCCCTTGTAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726739" ref_strand="+" ref_description="SGN-E726739 [LA12CG05]">
      <seq>ccaacttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaaacttgtccccggaaaatgaaactttttaacaatctttatattccttgtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14161" stop="12679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13861" g_stop="12979" g_length="883"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="882" r_length="882" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726739" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13861" e_stop="12979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAG</genome_strand>
        <mrna_strand>CCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAAACTTGTCCCCGGAAAATGAAACTTTTT-AACAATCTTTATATTCCTTGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726706" ref_strand="+" ref_description="SGN-E726706 [LA12CD05]">
      <seq>caaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatcttaatattccttgtaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14142" stop="12678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13842" g_stop="12983" g_length="860"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13842" e_stop="12983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGT</genome_strand>
        <mrna_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735151" ref_strand="+" ref_description="SGN-E735151 [LB14CC10]">
      <seq>caatagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaacttggtccccggaaaatgaaactttttaaacaatcttaatattcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14154" stop="12685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13854" g_stop="12985" g_length="870"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="870" r_length="870" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E735151" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13854" e_stop="12985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTT</genome_strand>
        <mrna_strand>CAATAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTGGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729707" ref_strand="+" ref_description="SGN-E729707 [LA21DD11]">
      <seq>atcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtcccccggaaaatgaaactttttaaacaatcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14144" stop="12692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13844" g_stop="12992" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="854" r_length="854" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729707" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13844" e_stop="12992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGT-CCCCGGAAAATGAAACTTTTTAAACAATCTTAAT</genome_strand>
        <mrna_strand>ATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCCGGAAAATGAAACTTTTTAAACAATCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729787" ref_strand="+" ref_description="SGN-E729787 [LA22AD09]">
      <seq>caaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaactttttaaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14142" stop="12696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13842" g_stop="12996" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13842" e_stop="12996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCT</genome_strand>
        <mrna_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732386" ref_strand="+" ref_description="SGN-E732386 [LB02AB04]">
      <seq>cttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctnctaaaacgttctcaagtctctggtcgtttgatgacagtgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14136" stop="12683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13836" g_stop="13000" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732386" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13836" e_stop="13000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACAT-TTCTCTTGATATAAACAC-AATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACA</genome_strand>
        <mrna_strand>CTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTNCTAAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727203" ref_strand="+" ref_description="SGN-E727203 [LA14AB07]">
      <seq>cacttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctaattgtcaccggaaaggtcccattggagaaccttgctgaccaccttgcagacccccgtaaacaacaatgcctggggctttccccacaaactttgtccccggaaaaatgaatctcttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14138" stop="12699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13838" g_stop="13001" g_length="838"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="844" r_length="844" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727203" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13838" e_stop="13001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTACAT-TTCTCTTGATATAAACAC-AATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCT-ATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGA-CCCCGTTAACAACAACG-CTTGGGCTTTTGCCACAAACTTTGTCCCCGG-AAAATGAAACTTTTTAAAC</genome_strand>
        <mrna_strand>CACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTAATTGTCACCGGAAAGGTCCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCCGTAAACAACAATGCCTGGGGCTTTCCCCACAAACTTTGTCCCCGGAAAAATGAATCTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732526" ref_strand="+" ref_description="SGN-E732526 [LB02BF09]">
      <seq>acctacttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgaactattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaaacatcttggccatctgggcttgccaagttgtactcatgggagccgatgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgccacaaactttgtccccggaaaatgaaacttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14162" stop="12704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13862" g_stop="13004" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="859" r_length="859" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732526" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13862" e_stop="13004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTA</genome_strand>
        <mrna_strand>ACCTACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAACTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAACATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGATGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726941" ref_strand="+" ref_description="SGN-E726941 [LA13BA12]">
      <seq>cgtttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaaggggccattggagaaccttgctgaccaccttgcaaaccccgttaacacaacgcttgggcttttgccacaaactttgtcccccggaaaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14156" stop="12712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13859" g_stop="13012" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726941" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13859" e_stop="13012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGT-CCCCGGAAAATGAA</genome_strand>
        <mrna_strand>CGTTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGGCCATTGGAGAACCTTGCTGACCACCTTGCAAACCCCGTTAAC-ACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCCGGAAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737766" ref_strand="+" ref_description="SGN-E737766 [LC11AF07]">
      <seq>ggctgcaggaatcggcacgaggcaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaactgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactatttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttgcccacaactttgtccccgggaaaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14140" stop="12712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13837" g_stop="13012" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="853" r_length="827" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E737766" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13837" e_stop="13012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCC-GGAAAATGAA</genome_strand>
        <mrna_strand>ACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACTGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTATTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCCACAACTTTGTCCCCGGGAAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277368" ref_strand="+" ref_description="SGN-E277368 [cLER-3-E8]">
      <seq>acccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgttcggattctttgttcaagctattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13851" stop="12750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13551" g_stop="13050" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277368" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13551" e_stop="13050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGC</genome_strand>
        <mrna_strand>ACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728180" ref_strand="+" ref_description="SGN-E728180 [LA16DH03]">
      <seq>gtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaagggtccattggagaacnttgctgaccaccttgcaaaccccgttaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14149" stop="12755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13849" g_stop="13055" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728180" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13849" e_stop="13055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAAC</genome_strand>
        <mrna_strand>GTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACNTTGCTGACCACCTTGCAAACCCCGTTAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731473" ref_strand="+" ref_description="SGN-E731473 [LA27BA02]">
      <seq>ccataaaaggcatcaaacacttacatttctcttgatataaaccctttggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatgttcggattcttcgttcaagctattgttaccggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14145" stop="12803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13855" g_stop="13103" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731473" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13855" e_stop="13103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAG</genome_strand>
        <mrna_strand>CCATAAAAGGCATCAAACACTTACATTTCTCTTGATATAAACCCTTTGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342789" ref_strand="+" ref_description="SGN-E342789 [cTOF-7-B13]">
      <seq>atcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaaggttgtcgacccactctaccctggtggcagcttcgacccactggggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgttcggattctttgttcaagctattgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14144" stop="12810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13844" g_stop="13110" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342789" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13844" e_stop="13110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTG-AGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACT-GGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTAC</genome_strand>
        <mrna_strand>ATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCTATTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464431" ref_strand="+" ref_description="SGN-E464431 [cPRO-18-A11]">
      <seq>cttttctcttgatataaacaccatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgagggaggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgaaggttaccgtattgctggtgggcctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattgggtcttgctgaagaccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattcttcgttcaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14132" stop="12819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13832" g_stop="13118" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E464431" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13832" e_stop="13118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCT</genome_strand>
        <mrna_strand>CTTTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTGGGTCTTGCTGAAGA-CCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726948" ref_strand="+" ref_description="SGN-E726948 [LA13BB08]">
      <seq>cgttaacttcatcagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcacaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaaggcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccataaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcaatgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggctgtcaacccactctaccctggtggcagcttcaacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtacacttgccatgttctctatgttcggattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14159" stop="12828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13863" g_stop="13128" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726948" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13863" e_stop="13128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTT</genome_strand>
        <mrna_strand>CGTTAACTTCATCAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCACAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGGCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCATAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAATGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGCTGTCAACCCACTCTACCCTGGTGGCAGCTTCAACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTACACTTGCCATGTTCTCTATGTTCGGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339923" ref_strand="+" ref_description="SGN-E339923 [cTOF-3-P19]">
      <seq>ttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgttcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14156" stop="12833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13856" g_stop="13133" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E339923" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13856" e_stop="13133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTG-AGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGA</genome_strand>
        <mrna_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727996" ref_strand="+" ref_description="SGN-E727996 [LA16BE09]">
      <seq>ttcaattgtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgccatgttctctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14156" stop="12839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13856" g_stop="13139" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727996" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13856" e_stop="13139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATG</genome_strand>
        <mrna_strand>TTCAATTGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729132" ref_strand="+" ref_description="SGN-E729132 [LA20AD01]">
      <seq>accancaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttcccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcnacccactctaccctggtggcagcttngacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaaaaacggtagacttgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14147" stop="12849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13847" g_stop="13149" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729132" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13847" e_stop="13149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCAT</genome_strand>
        <mrna_strand>ACCANCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTT-CCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCNACCCACTCTACCCTGGTGGCAGCTTNGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAAAACGGTAGACTTGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728926" ref_strand="+" ref_description="SGN-E728926 [LA19BF08]">
      <seq>aggatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14144" stop="12858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13847" g_stop="13158" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728926" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13847" e_stop="13158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAG</genome_strand>
        <mrna_strand>AGGATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291352" ref_strand="+" ref_description="SGN-E291352 [cLET-2-F11]">
      <seq>tcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13995" stop="12863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13695" g_stop="13163" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E291352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13695" e_stop="13163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAAC</genome_strand>
        <mrna_strand>TCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293230" ref_strand="+" ref_description="SGN-E293230 [cLET-12-L17]">
      <seq>gccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13959" stop="12863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13659" g_stop="13163" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13659" e_stop="13163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAAC</genome_strand>
        <mrna_strand>GCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346450" ref_strand="+" ref_description="SGN-E346450 [cTOF-23-H23]">
      <seq>ttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaaggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14156" stop="12877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13856" g_stop="13177" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346450" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13856" e_stop="13177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAA</genome_strand>
        <mrna_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728315" ref_strand="+" ref_description="SGN-E728315 [LA17BF08]">
      <seq>cacacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgctgaagaaccaaagcatttgctgagctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14142" stop="12883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13842" g_stop="13182" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728315" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13842" e_stop="13182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAA</genome_strand>
        <mrna_strand>CACACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGAACCA-AAGCATTTGCTGAGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290296" ref_strand="+" ref_description="SGN-E290296 [cLET-5-L14]">
      <seq>gccctgaccgcgttaagggcttggtaccattctctggtgagtcaccaagctactcgaccggcgaattccctggtgactacggctgggataccgctggactttcagcacacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgctaggggctcttggctgagtcttccctgagctatgggctcgtaacggcgtcacgttcggtgaggctgtgtggatcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgatgaaggttaccgtattgctggaggccctcttggtgaggttgtcgacccactctaccctggtggcagattcgacccactgggtcttgctgaagacccagaggcatttgctgagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13959" stop="12882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13659" g_stop="13182" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290296" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13659" e_stop="13182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAA</genome_strand>
        <mrna_strand>GCCCTGACCGCGTTAAGGGCTTGGTACCATTCTCTGGTGAGTCACCAAGCTACTCGACCGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCACACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTAGGGGCTCTTGGCTGAGTCTTCCCTGAGCTATGGGCTCGTAACGGCGTCACGTTCGGTGAGGCTGTGTGGATCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGATGAAGGTTACCGTATTGCTGGAGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGATTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342925" ref_strand="+" ref_description="SGN-E342925 [cTOF-11-E22]">
      <seq>gtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaaggntgtcgacccactctacccctggtggcagcttcgacccactgggtcttgctgaagacccagaggcatttgctgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14149" stop="12884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13849" g_stop="13184" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342925" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13849" e_stop="13184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTG-AGGTTGTCGACCCACTCTA-CCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTC</genome_strand>
        <mrna_strand>GTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAAGGNTGTCGACCCACTCTACCCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290141" ref_strand="+" ref_description="SGN-E290141 [cLET-5-L2]">
      <seq>tcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccactgggtcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13995" stop="12911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13695" g_stop="13211" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13695" e_stop="13211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCT</genome_strand>
        <mrna_strand>TCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279721" ref_strand="+" ref_description="SGN-E279721 [cLER-5-B12]">
      <seq>tgctcttggctgtgtcttccctgagctattggctcgtaacggcgttaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaagggtaccgcattgctggtggccctattggtgaggatggcgacccactctaccctggtggcagcttcgacccactgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13787" stop="12917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13487" g_stop="13217" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279721" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13487" e_stop="13217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGT</genome_strand>
        <mrna_strand>TGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTTAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGGTACCGCATTGCTGGTGGCCCTATTGGTGAGGATGGCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728744" ref_strand="+" ref_description="SGN-E728744 [LA18DC06]">
      <seq>caacttcaacagtatcancaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagccgttgaaggttaccgtattgctggtggccctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14160" stop="12921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13860" g_stop="13221" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728744" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13860" e_stop="13221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACT</genome_strand>
        <mrna_strand>CAACTTCAACAGTATCANCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277953" ref_strand="+" ref_description="SGN-E277953 [cLER-4-O19]">
      <seq>caaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgcgataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggatcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14142" stop="13001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13842" g_stop="13301" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277953" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13842" e_stop="13301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</genome_strand>
        <mrna_strand>CAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGCGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGATCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268083" ref_strand="+" ref_description="SGN-E268083 [cLEI-15-L22]">
      <seq>tacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14098" stop="13001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13799" g_stop="13301" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E268083" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13799" e_stop="13301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</genome_strand>
        <mrna_strand>TACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289460" ref_strand="+" ref_description="SGN-E289460 [cLET-3-H20]">
      <seq>tgagtcaccaagctacttgaccggcgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggagatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcggcaagatctgtgaggctgtgtggttcaaagctggatcccaaatctttagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13922" stop="13001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13622" g_stop="13301" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289460" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13622" e_stop="13301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</genome_strand>
        <mrna_strand>TGAGTCACCAAGCTACTTGACCGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGAGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGGCAAGATCTGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTTAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287821" ref_strand="+" ref_description="SGN-E287821 [cLES-19-J13]">
      <seq>tcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14155" stop="13003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13855" g_stop="13303" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E287821" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13855" e_stop="13303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAG</genome_strand>
        <mrna_strand>TCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200119" ref_strand="+" ref_description="SGN-E200119 [cLEB-7-J3]">
      <seq>gcacgagcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14154" stop="13005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13861" g_stop="13305" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E200119" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13861" e_stop="13305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGG</genome_strand>
        <mrna_strand>GCACGAGCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725995" ref_strand="+" ref_description="SGN-E725995 [LA08DH08]">
      <seq>caacttcaacagtatcatcaaacacttacatttctcttgatatggacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14160" stop="13005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13860" g_stop="13305" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725995" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13860" e_stop="13305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGG</genome_strand>
        <mrna_strand>CAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATGGACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347684" ref_strand="+" ref_description="SGN-E347684 [cTOF-26-C1]">
      <seq>tatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14148" stop="13005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13848" g_stop="13305" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13848" e_stop="13305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGG</genome_strand>
        <mrna_strand>TATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294593" ref_strand="+" ref_description="SGN-E294593 [cLET-22-J23]">
      <seq>caagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtactcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13991" stop="13006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13691" g_stop="13306" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13691" e_stop="13306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGG</genome_strand>
        <mrna_strand>CAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725728" ref_strand="+" ref_description="SGN-E725728 [LA05CA07]">
      <seq>cttcaacagtatcatcaaacacttacatttctcttgataaaaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcaccaagcatcttggccatctgggcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14157" stop="13022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13857" g_stop="13322" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725728" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13857" e_stop="13322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGC</genome_strand>
        <mrna_strand>CTTCAACAGTATCATCAAACACTTACATTTCTCTTGATAAAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACCAAGCATCTTGGCCATCTGGGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324434" ref_strand="+" ref_description="SGN-E324434 [cTOC-6-G17]">
      <seq>aaacacttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaagccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14141" stop="13023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13841" g_stop="13323" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E324434" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13841" e_stop="13323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACAT-TTCTCTTGATATAAACAC-AATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTG</genome_strand>
        <mrna_strand>AAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710646" ref_strand="+" ref_description="SGN-E710646 [FA56AC08]">
      <seq>aggcctttttcttctcttaaataaacacaaatggcagctgctaccatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccacatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaaccatcttggccatctgggcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14129" stop="13023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13840" g_stop="13323" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E710646" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13840" e_stop="13323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTACATTTCTCTTGATATAAACACAA-TGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTG</genome_strand>
        <mrna_strand>AGGCCTTTTTCTTCTCTT-AAATAAACACAAATGGCAGCTGCTACCATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCACATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAACCATCTTGGCCATCTGGGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285376" ref_strand="+" ref_description="SGN-E285376 [cLER-20-N17]">
      <seq>ataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaagtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14119" stop="13024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13819" g_stop="13324" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285376" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13819" e_stop="13324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACAC-AATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTT</genome_strand>
        <mrna_strand>ATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAAGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290218" ref_strand="+" ref_description="SGN-E290218 [cLET-5-G24]">
      <seq>ttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggcgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggagagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcatggctgagtcttccctcagctattgactcgtaacggcgtcaagtatcctgaggctgagtggatcaaagctggatcccaaatcatcagagagggtggacttgactacttgggcgacccaagctcggtccatgcacaaagcatcttggccatatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14156" stop="13026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13856" g_stop="13326" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290218" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13856" e_stop="13326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC</genome_strand>
        <mrna_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGCGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGAGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCATGGCTGAGTCTTCCCTCAGCTATTGACTCGTAACGGCGTCAAGTATCCTGAGGCTGAGTGGATCAAAGCTGGATCCCAAATCATCAGAGAGGGTGGACTTGACTACTTGGGCGACCCAAGCTCGGTCCATGCACAAAGCATCTTGGCCATATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287780" ref_strand="+" ref_description="SGN-E287780 [cLES-19-I9]">
      <seq>taaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14123" stop="13026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13823" g_stop="13326" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E287780" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13823" e_stop="13326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATAAACAC-AATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC</genome_strand>
        <mrna_strand>TAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279042" ref_strand="+" ref_description="SGN-E279042 [cLEL-4-C13](-)">
      <seq>gcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccctcactgaagatttgggatccagctttgaaccacacagccctcaccgaacttgacgccgttacgagccaatagctcagggaagacacagccaagagcaccaagcatagcccatctgcagtggatcacctcaagttcgcggttcttggcaaaggtttctgggtctgctgaaagtccagcggtatcccagccgtagtcaccagggaattcaccggtcaagtagcttggtgactcaccagagaatggtcccaagtacttaacacggtcagggccataccatgggctgctagatggggctgacttggcgacagcctttctcatagtgatccttccatttccggagatttctgaggcagagggtgacagtttcaccgcctgtccagcaaaaaaaggggaagaaagagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13026" stop="14095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13326" g_stop="13798" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E279042" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13326" e_stop="13798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGGGATCCAGCTTTGAACCACACAG-CCTCACCGAACTTGACGCCGTTACGAGCCAATAGCTCAGGGAAGACACAGCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCGCGGTTCTTGGCAAAGGTTTCTGGGTCTGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGTGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGT</genome_strand>
        <mrna_strand>GCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGGGATCCAGCTTTGAACCACACAGCCCTCACCGAACTTGACGCCGTTACGAGCCAATAGCTCAGGGAAGACACAGCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCGCGGTTCTTGGCAAAGGTTTCTGGGTCTGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGTGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCGGAGATTTCTGAGGCAGAGGGTGACAGTTTCACCGCCTGTCCAGCAAAAAAAGGGGAAGAAAGAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281652" ref_strand="+" ref_description="SGN-E281652 [cLER-14-F3]">
      <seq>aacttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14159" stop="13037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13859" g_stop="13337" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E281652" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13859" e_stop="13337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTG</genome_strand>
        <mrna_strand>AACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290280" ref_strand="+" ref_description="SGN-E290280 [cLET-5-D14]">
      <seq>ttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14156" stop="13037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13856" g_stop="13337" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290280" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13856" e_stop="13337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTG</genome_strand>
        <mrna_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725985" ref_strand="+" ref_description="SGN-E725985 [LA08DG06]">
      <seq>aaaccaacttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacanagcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14164" stop="13038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13864" g_stop="13338" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725985" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13864" e_stop="13338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTT</genome_strand>
        <mrna_strand>AAACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACANAGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725744" ref_strand="+" ref_description="SGN-E725744 [LA05CC01]">
      <seq>gtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcacagctggatcccaatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14149" stop="13040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13849" g_stop="13340" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725744" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13849" e_stop="13340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATC</genome_strand>
        <mrna_strand>GTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCACAGCTGGATCCC-AATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726045" ref_strand="+" ref_description="SGN-E726045 [LA10AE10]">
      <seq>gtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtaagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaataccctggtgactacagctgggataccgctggactttcagcagacccataaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgctgggggctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcagagctggatccgcaatcttcagtgagggtggacttgactacttgtgcaacccaagcttagtccatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14149" stop="13049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13849" g_stop="13349" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726045" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13849" e_stop="13349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCA</genome_strand>
        <mrna_strand>GTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTAAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATACCCTGGTGACTACAGCTGGGATACCGCTGGACTTTCAGCAGACCCATAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTGGGGGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAGAGCTGGATCCGCAATCTTCAGTGAGGGTGGACTTGACTACTTGTGCAACCCAAGCTTAGTCCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293263" ref_strand="+" ref_description="SGN-E293263 [cLET-18-G7]">
      <seq>acaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttgggcaacccaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14113" stop="13058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13813" g_stop="13358" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293263" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13813" e_stop="13358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTG</genome_strand>
        <mrna_strand>ACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277401" ref_strand="+" ref_description="SGN-E277401 [cLER-3-O6]">
      <seq>aaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctgtgtggttcaaagctggatcccaaatcttcagtgagggtggacttgactacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14141" stop="13071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13841" g_stop="13371" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277401" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13841" e_stop="13371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGG</genome_strand>
        <mrna_strand>AAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277891" ref_strand="+" ref_description="SGN-E277891 [cLEL-5-H7](-)">
      <seq>ttgggatccagctttgaaccacancagcctcaccgaacttgacgccgttacgagccaatagctcagggaagacacagccnagagcaccaagcatagcccatctgcagtggatcacctcaagttcgcggttcttggcaaaggtttctgggtctgctgaaagtccagcggtatcccagccgtagtcaccagggaattcaccggtcaagtagcttggtgactcaccagagaatggtcccaagtacttaacacggtcagggccataccatgggctgctagatggggctgacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagagggtgagagtttcaccgcctgtccagcaaaagaaggggaagaaagagccattgtagcagctgccattgtgtttatatcaagagaaatgtaagtgtttgatgatactgttgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13103" stop="14154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13403" g_stop="13861" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E277891" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13403" e_stop="13861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGATCCAGCTTTGAACCACA-CAGCCTCACCGAACTTGACGCCGTTACGAGCCAATAGCTCAGGGAAGACACAGCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCGCGGTTCTTGGCAAAGGTTTCTGGGTCTGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGTGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTTGCAGCTGCCATTGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGATACTGTTGAAGTTGG</genome_strand>
        <mrna_strand>TTGGGATCCAGCTTTGAACCACANCAGCCTCACCGAACTTGACGCCGTTACGAGCCAATAGCTCAGGGAAGACACAGCCNAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCGCGGTTCTTGGCAAAGGTTTCTGGGTCTGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGTGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGATACTGTTGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729050" ref_strand="+" ref_description="SGN-E729050 [LA19DC07]">
      <seq>gggaaaccaacttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgcaacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttccgtgaggctgtgtgggtcaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14164" stop="13112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13867" g_stop="13412" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729050" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13867" e_stop="13412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCT</genome_strand>
        <mrna_strand>GGGAAACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCCGTGAGGCTGTGTGGGTCAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347140" ref_strand="+" ref_description="SGN-E347140 [cTOF-25-I17]">
      <seq>accaacttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttcggtgaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14162" stop="13126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13862" g_stop="13426" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347140" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13862" e_stop="13426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTG</genome_strand>
        <mrna_strand>ACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279814" ref_strand="+" ref_description="SGN-E279814 [cLER-8-M22]">
      <seq>aaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14141" stop="13136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13841" g_stop="13436" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279814" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13841" e_stop="13436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTC</genome_strand>
        <mrna_strand>AAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277965" ref_strand="+" ref_description="SGN-E277965 [cLER-4-E8]">
      <seq>ttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgcgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggctgtgtcttccctgagctattggctcgtaacggcgtcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14156" stop="13139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13856" g_stop="13439" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277965" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13856" e_stop="13439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAG</genome_strand>
        <mrna_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288709" ref_strand="+" ref_description="SGN-E288709 [cLES-8-D21]">
      <seq>ttcaacagtatcatcaaacacttacatttctcttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggggaaactctcaccctctggctgagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatgggatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagcagacccagaaacctttgccaagaaccgggaacttgaggtgaaccactgcagatgggctatgcttggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14156" stop="13185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13856" g_stop="13485" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288709" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13856" e_stop="13485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGC</genome_strand>
        <mrna_strand>TTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGGGAAACTCTCACCCTCTGGCTGAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGGATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGGGAACTTGAGGTGAACCACTGCAGATGGGCTATGCTTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280095" ref_strand="+" ref_description="SGN-E280095 [cLEL-7-J24](-)">
      <seq>catagcccatctgcagtggatcacctcaagttcgcggttcttggcaaagggttctgggtctgctgaaagtccagcggtatcccagccgtagtcaccagggaattcaccggtcaagtagcttggtgactcaccagagaatggtcccaagtacttaacacggtcagggccataccatgggctgctagatggggctgacttggcgacagcctttctcatagtgatccttccatttccagagatttctgaggcagagggtgagagtttcaccgcctgtccagcaaaagaaggggaagaaagagccattgtagcagctgccattgtgtttatatcaagagaaatgtaagtgtttgatgatactgttgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="13193" stop="14154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13493" g_stop="13861" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E280095" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13493" e_stop="13861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGCCCATCTGCAGTGGATCACCTCAAGTTCGCGGTTCTTGGCAAAGGTTTCTGGGTCTGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGTGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTTGCAGCTGCCATTGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGATACTGTTGAAGTTGG</genome_strand>
        <mrna_strand>CATAGCCCATCTGCAGTGGATCACCTCAAGTTCGCGGTTCTTGGCAAAGGGTTCTGGGTCTGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGTGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGATACTGTTGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283960" ref_strand="+" ref_description="SGN-E283960 [cLER-13-N1]">
      <seq>cttgatataaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaggcggtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtcagccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgaccggtgaattccctggtgactacggctgggataccgctggactttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="14125" stop="13254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13825" g_stop="13554" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283960" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13825" e_stop="13554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGC</genome_strand>
        <mrna_strand>CTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287466" ref_strand="+" ref_description="SGN-E287466 [cLES-9-I17]">
      <seq>tttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttagtcctgaatttcatttgatgaatgaaatactgcaaaattcatattgaaggggaaaattgatgacgaagcaaaattaacaagaccagagttaaatttgaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20427" stop="19607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20127" g_stop="19897" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E287466" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20127" e_stop="19897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAGGGGAAAATTGATGACGAAGCAAAATTAACAAGACCAGAGTTAAATTTGAGGTGTGGTAAAA</genome_strand>
        <mrna_strand>TTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAGGGGAAAATTGATGACGAAGCAAAATTAACAAGACCAGAGTTAAATTTGAGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412406" ref_strand="+" ref_description="SGN-E412406 [STM-16-A8]">
      <seq>ctttttttttttttccccttcaatatgaattttgcagtatttcattcatcattggaaaatgaaattcaggactaagaaaaatccattctattgtcaagtaaactcacaactaaaactttacaaagccatcaaacaataatatctagagaacgttttatgatattcattttccgggaacaaagtttgtggcaaaggcccatgcattgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaatggcctgaacgaagaatccaaacatagagaacatagcaagtctgccgttcttaatctcctttactttgagctcagcaaatgcctctggatcatcagcaagacctaatgggtcaaaactgccgccagggtagagtgggtcgacgacctcaccaagaggtccacctgcaatacggtatccctcaacagctcccattaacacaacttggcaagcccaaatggccaagatgctttgtgcatggaccaagcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="7775" stop="20751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19939" g_stop="20451" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E412406" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19939" e_stop="20451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTCATCAATTTTCCCCTTCAATATGAATTTTGCAGTATTTCATTCATC------AAATGAAATTCAGGACTAAGAAAAAATCATTCTATTGTCAAGTAAACTCACAACTAAAACTTTACAAAGCCATCAAACAATAATATCTAGAGAACATTTTATGATATTCATTTGCCGGGAACAAAGTTTGTGGCAAAGGCCCATGCATTGTTGTTAACTGGATCTGCAAGGTGGTCAGCAAGATTCTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCCTCAACAGCTCCCATCAGTACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGG</genome_strand>
        <mrna_strand>CTTTTTTTT--TTTTTCCCCTTCAATATGAATTTTGCAGTATTTCATTCATCATTGGAAAATGAAATTCAGGACTAAGAAAAATCCATTCTATTGTCAAGTAAACTCACAACTAAAACTTTACAAAGCCATCAAACAATAATATCTAGAGAACGTTTTATGATATTCATTTTCCGGGAACAAAGTTTGTGGCAAAGGCCCATGCATTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACGAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACTTTGAGCTCAGCAAATGCCTCTGGATCATCAGCAAGACCTAATGGGTCAAAACTGCCGCCAGGGTAGAGTGGGTCGACGACCTCACCAAGAGGTCCACCTGCAATACGGTATCCCTCAACAGCTCCCATTAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737511" ref_strand="+" ref_description="SGN-E737511 [LC10AF07]">
      <seq>gggctgcaggctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttagtcctgaatttcatttgatgaatgaaatactgcaaaattcatattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20952" stop="19659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20660" g_stop="19948" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E737511" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20660" e_stop="19948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATAC-CGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAGGGGAAAATTG</genome_strand>
        <mrna_strand>GGGCTGCAGGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737065" ref_strand="+" ref_description="SGN-E737065 [LC08BE01]">
      <seq>ctggactttcagctgatcccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttagtcctgaatttcatttgatgaatgaaatactgcaaaattcatattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20951" stop="19659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20651" g_stop="19948" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E737065" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20651" e_stop="19948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAGGGGAAAATTG</genome_strand>
        <mrna_strand>CTGGACTTTCAGCTGATCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738778" ref_strand="+" ref_description="SGN-E738778 [LC14DG08]">
      <seq>ctggactttcagctgtccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttagtcctgaatttcatttgatgaatgaaatactgcaaaattcatattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20951" stop="19659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20651" g_stop="19948" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E738778" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20651" e_stop="19948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAGGGGAAAATTG</genome_strand>
        <mrna_strand>CTGGACTTTCAGCTGTCCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740919" ref_strand="+" ref_description="SGN-E740919 [LC23BH12]">
      <seq>ctggactttcagctgtccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttagtcctgaatttcatttgatgaatgaaatactgcaaaattcatattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20951" stop="19659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20651" g_stop="19948" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E740919" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20651" e_stop="19948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAGGGGAAAATTG</genome_strand>
        <mrna_strand>CTGGACTTTCAGCTGTCCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736135" ref_strand="+" ref_description="SGN-E736135 [LC04CA03]">
      <seq>ctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttagtcctgaatttcatttgatgaatgaaatactgcaaaattcatattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20951" stop="19659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20651" g_stop="19948" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E736135" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20651" e_stop="19948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAGGGGAAAATTG</genome_strand>
        <mrna_strand>CTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615282" ref_strand="+" ref_description="SGN-E615282 [65079]">
      <seq>cttgctatgttctctatgtttggattcttcgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaatgcatgggcctttgccacaaactttgttcccggaaaatgaatatcataaaacgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatggatttttcttagtcctgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20541" stop="19699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20241" g_stop="19985" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E615282" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20241" e_stop="19985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAA</genome_strand>
        <mrna_strand>CTTGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGAAAATGAATATCATAAAACGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGGATTTTTCTTAGTCCTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343268" ref_strand="+" ref_description="SGN-E343268 [cTOF-17-B11]">
      <seq>tggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttagtcctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20974" stop="19699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20674" g_stop="19989" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343268" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20674" e_stop="19989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGA</genome_strand>
        <mrna_strand>TGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726574" ref_strand="+" ref_description="SGN-E726574 [LA12AH07]">
      <seq>cgcttcaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggagtctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgnacaccttgcagatccagttaacaacaatgcatggggctttgccacaaactttgttcccggcaaatgaatatcatnaaatgttctctagatattaattgttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcctagtcctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21244" stop="19699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20949" g_stop="19990" g_length="960"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="960" r_length="960" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726574" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>960</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20949" e_stop="19990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTG</genome_strand>
        <mrna_strand>CGCTTCAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGAGTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGNACACCTTGCAGATCCAGTTAACAACAATGCATGGGGCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATNAAATGTTCTCTAGATATTAATTGTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCCTAGTCCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730616" ref_strand="+" ref_description="SGN-E730616 [LA24CF10]">
      <seq>ctatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatggggctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggccttgtaaaagtttagttgtgaagttaacttgacaaagaaatgatttttttcttagtcctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21241" stop="19699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20942" g_stop="19990" g_length="953"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="955" r_length="955" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730616" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>953</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20942" e_stop="19990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTG-AGTTTACTTGACAATAGAATGA-TTTTTTCTTAGTCCTGAATTTCATTTG</genome_strand>
        <mrna_strand>CTATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGGCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCCTTGTAAAAGTTTAGTTGTGAAGTTAACTTGACAAAGAAATGATTTTTTTCTTAGTCCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733202" ref_strand="+" ref_description="SGN-E733202 [LB04BA04]">
      <seq>ccttagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggcttttgtaagttttagttgtgagtttacttgacaatagaatgattttttcttagtcctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21125" stop="19699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20825" g_stop="19990" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="836" r_length="836" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733202" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20825" e_stop="19990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTG</genome_strand>
        <mrna_strand>CCTTAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTTGTAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402950" ref_strand="+" ref_description="SGN-E402950 [PPC-9-M19]">
      <seq>ctaccccggtggcagttttgacccattaggtcttgctgatgacccagaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggaaaatgaatatcataaattgttctctagatattactgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatggatttttcttagtcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20632" stop="19699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20332" g_stop="19991" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E402950" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20332" e_stop="19991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTT</genome_strand>
        <mrna_strand>CTACCCCGGTGGCAGTTTTGACCCATTAGGTCTTGCTGATGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGAAAATGAATATCATAAATTGTTCTCTAGATATTACTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGGATTTTTCTTAGTCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727254" ref_strand="+" ref_description="SGN-E727254 [LA14AG01]">
      <seq>ccgatttactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccgggcaatgaatatcataaaatgntctctagatattattgtttgatggctttgtaaagttttagttgtgagtttactttgacatagaatgattttttcttannaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21224" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20930" g_stop="19995" g_length="936"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="936" r_length="936" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727254" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>936</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20930" e_stop="19995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTC</genome_strand>
        <mrna_strand>CCGATTTACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGGCAATGAATATCATAAAATGNTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTTGACATAGAATGATTTTTTCTTANNAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740273" ref_strand="+" ref_description="SGN-E740273 [LC20DB05]">
      <seq>catttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttggtaagttttagttgtgagtttacttgaacatagaatgattttttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21240" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20941" g_stop="19997" g_length="945"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="945" r_length="945" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E740273" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20941" e_stop="19997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATT</genome_strand>
        <mrna_strand>CATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGGTAAGTTTTAGTTGTGAGTTTACTTGAACATAGAATGATTTTTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615264" ref_strand="+" ref_description="SGN-E615264 [65061]">
      <seq>gcagttttgacccattaggtcttgctgatgatccagaggcatttgctgagctcaaagtaaaggagattaagaacggcagacttgctatgttctctatgtttggattcttcgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggaaaatgaatatcataaaacgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatggatttttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20621" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20321" g_stop="19997" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E615264" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20321" e_stop="19997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATT</genome_strand>
        <mrna_strand>GCAGTTTTGACCCATTAGGTCTTGCTGATGATCCAGAGGCATTTGCTGAGCTCAAAGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGAAAATGAATATCATAAAACGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGGATTTTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278265" ref_strand="+" ref_description="SGN-E278265 [cLER-9-P1]">
      <seq>tcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20509" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20209" g_stop="19997" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278265" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20209" e_stop="19997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATT</genome_strand>
        <mrna_strand>TCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280516" ref_strand="+" ref_description="SGN-E280516 [cLER-1-M13](-)">
      <seq>cactgcagatgggctatgcttggtgctcttggatgtgtcttccatgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtaagtttacttgacaatagaatgattttttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20895" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20595" g_stop="19999" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280516" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20595" e_stop="19999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAA</genome_strand>
        <mrna_strand>CACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCATGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTAAGTTTACTTGACAATAGAATGATTTTTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288433" ref_strand="+" ref_description="SGN-E288433 [cLES-16-D24]">
      <seq>aaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgctgagggttaccgtattgctggtggacctctcggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgaactcaaggtaaaggagattaacaacggcagacttgctatgctctctatgttaggattctttgatcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctctgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20826" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20526" g_stop="19999" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288433" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20526" e_stop="19999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAA</genome_strand>
        <mrna_strand>AAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGCTGAGGGTTACCGTATTGCTGGTGGACCTCTCGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAACTCAAGGTAAAGGAGATTAACAACGGCAGACTTGCTATGCTCTCTATGTTAGGATTCTTTGATCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTCTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735226" ref_strand="+" ref_description="SGN-E735226 [LB14DB01]">
      <seq>gatacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttagtcctgaaaaaanaanaaaaaaaaaaaaaaanaaatttcgggggggggccgggaccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20931" stop="19699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20631" g_stop="20000" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="660"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E735226" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20631" e_stop="20000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGA</genome_strand>
        <mrna_strand>GATACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278967" ref_strand="+" ref_description="SGN-E278967 [cLER-2-H13]">
      <seq>tttttttaagaaaaaatcattctattgtcaagtaaactcacaactaaaactttacaaagccatcaaacaataatatctagagaacattttatgatattcatttgccgggaacaaagtttgtggcaaaggcccatgcattgttgttaactggatctgcaaggtggtcagcaagattctccaatggaccctttccggtaacaatggcttgaacaaagaatccaaacatagagaacatagcaagtctgccgttcttaatctcctttaccttgagctcagcaaatgcctccgggtcttcagcaaggcctaatgggtcgaagctgccacctgngtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtaaccctcaacagctcccatcagtacaacttgacaagcccagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="19707" stop="20718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20001" g_stop="20418" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E278967" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20001" e_stop="20418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGACTAAGAAAAAATCATTCTATTGTCAAGTAAACTCACAACTAAAACTTTACAAAGCCATCAAACAATAATATCTAGAGAACATTTTATGATATTCATTTGCCGGGAACAAAGTTTGTGGCAAAGGCCCATGCATTGTTGTTAACTGGATCTGCAAGGTGGTCAGCAAGATTCTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCCTCAACAGCTCCCATCAGTACAACTTGACAAGCCCAGAT</genome_strand>
        <mrna_strand>TTTTTTTAAGAAAAAATCATTCTATTGTCAAGTAAACTCACAACTAAAACTTTACAAAGCCATCAAACAATAATATCTAGAGAACATTTTATGATATTCATTTGCCGGGAACAAAGTTTGTGGCAAAGGCCCATGCATTGTTGTTAACTGGATCTGCAAGGTGGTCAGCAAGATTCTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCTGNGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCCTCAACAGCTCCCATCAGTACAACTTGACAAGCCCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731577" ref_strand="+" ref_description="SGN-E731577 [LA27CC04]">
      <seq>cagccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaagccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatggggctttgccacaaactttgttcccggcaaatgaatatcataaaatgntctctagaataatattgtttgatggcttttgtaaagttttaaattgtgaagtttacttgacaataaaatgaattttttcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21254" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20954" g_stop="20007" g_length="948"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="953" r_length="953" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="954" polyA_stop="966"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731577" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20954" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAG-ATATTATTGTTTGATGGC-TTTGTAAAGTTTT-AGTTGTG-AGTTTACTTGACAATAGAATG-ATTTTTTCTTA</genome_strand>
        <mrna_strand>CAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAAGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGGCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGNTCTCTAGAATAATATTGTTTGATGGCTTTTGTAAAGTTTTAAATTGTGAAGTTTACTTGACAATAAAATGAATTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728573" ref_strand="+" ref_description="SGN-E728573 [LA18BA09]">
      <seq>ccgccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattatttgttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21254" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20954" g_stop="20007" g_length="948"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="948" r_length="948" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="949" polyA_stop="964"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728573" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20954" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</genome_strand>
        <mrna_strand>CCGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTTGTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727286" ref_strand="+" ref_description="SGN-E727286 [LA14BA11]">
      <seq>cgcttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccgggaaatgaatatcataaaatgttctctaaatattatgtttgatggctttgaaaagttttagttgggagtttacttgacaaagaatgatttttttcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21250" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20952" g_stop="20007" g_length="946"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="945" r_length="945" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="946" polyA_stop="957"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727286" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>946</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20952" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGA-TTTTTTCTTA</genome_strand>
        <mrna_strand>CGCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGGAAATGAATATCATAAAATGTTCTCTAAATATTA-TGTTTGATGGCTTTGAAAAGTTTTAGTTGGGAGTTTACTTGACAA-AGAATGATTTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732731" ref_strand="+" ref_description="SGN-E732731 [LB02DH08]">
      <seq>cttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgatgtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaaagtttagttgtgagtttactttgacatagaatgatttttttcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21250" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20950" g_stop="20007" g_length="944"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="945" r_length="945" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="946" polyA_stop="959"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732731" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>944</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20950" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGA-TTTTTTCTTA</genome_strand>
        <mrna_strand>CTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGATGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAAGTTTAGTTGTGAGTTTACTTTGACATAGAATGATTTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727163" ref_strand="+" ref_description="SGN-E727163 [LA13DF08]">
      <seq>caacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcatnaaatgttctctagatattattgtttgatggctttgtaagtttttagtgtgagtttacttgaacatagaatgattttttcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21247" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20947" g_stop="20007" g_length="941"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="940" r_length="940" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="941" polyA_stop="954"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727163" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20947" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</genome_strand>
        <mrna_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATNAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAGTTTTTAG-TGTGAGTTTACTTGAACATAGAATGATTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737026" ref_strand="+" ref_description="SGN-E737026 [LC08AH04]">
      <seq>actatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaaagtttaattgtgagtttacttgaacatagaatgattttttctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21245" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20945" g_stop="20007" g_length="939"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="939" r_length="939" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="940" polyA_stop="953"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E737026" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20945" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</genome_strand>
        <mrna_strand>ACTATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAAGTTTAATTGTGAGTTTACTTGAACATAGAATGATTTTTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739446" ref_strand="+" ref_description="SGN-E739446 [LC17CA03]">
      <seq>caatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttaanaaaaacnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21244" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20944" g_stop="20007" g_length="938"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="938" r_length="938" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="948" polyA_stop="965"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E739446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>938</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20944" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</genome_strand>
        <mrna_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740274" ref_strand="+" ref_description="SGN-E740274 [LC20DB06]">
      <seq>atttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggccttgtaagttttagttgtgagtttactttgacatagaatgattttttcctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21240" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20940" g_stop="20007" g_length="934"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="933" r_length="933" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="934" polyA_stop="945"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E740274" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>934</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20940" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</genome_strand>
        <mrna_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCCTTGT-AAGTTTTAGTTGTGAGTTTACTTTGACATAGAATGATTTTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729640" ref_strand="+" ref_description="SGN-E729640 [LA21CF06]">
      <seq>ggcagagggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21182" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20886" g_stop="20007" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="878" polyA_stop="896"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729640" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20886" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</genome_strand>
        <mrna_strand>GGCAGA-GGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCAT--AATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224555" ref_strand="+" ref_description="SGN-E224555 [cLEL-27-M17](-)">
      <seq>ggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctcaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgacccccttgcagatccagttaacaccaatgcatgggcctttgccacaacctttgttcccggcaaatgaatatcataaaatgttctctagatattatcgtttgatggctttgtaaagatttagttgtgagttgacccccccatagaatgattttttcttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20647" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20347" g_stop="20007" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="363"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E224555" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20347" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</genome_strand>
        <mrna_strand>GGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTCAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCCCCTTGCAGATCCAGTTAACACCAATGCATGGGCCTTTGCCACAACCTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATCGTTTGATGGCTTTGTAAAGATTTAGTTGTGAGTTGACCCCCCCATAGAATGATTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347257" ref_strand="+" ref_description="SGN-E347257 [cTOF-25-P23]">
      <seq>acccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20639" stop="19707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20339" g_stop="20007" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="345"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20339" e_stop="20007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</genome_strand>
        <mrna_strand>ACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727568" ref_strand="+" ref_description="SGN-E727568 [LA15AC12]">
      <seq>cgataaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggctttgtaaagttttagttgtgagtttacttgacaatagaatgattttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21121" stop="19708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20823" g_stop="20008" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727568" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20823" e_stop="20008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTT</genome_strand>
        <mrna_strand>CGATAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224775" ref_strand="+" ref_description="SGN-E224775 [cLEL-27-M17](-)">
      <seq>ggtggacctcttggtgaggttgtcgacccactctacccgggtggcaggttcgccccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaaggggccattggagaatcttgctgacccccttgcagatccagttaacaccaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctttagatattattgttttgtggctttgtaaagttttagttgtgggtttgcttcccaaaagaatgtttaattgttccaaggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20664" stop="19714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20364" g_stop="20018" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="380"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E224775" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20364" e_stop="20018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATG</genome_strand>
        <mrna_strand>GGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCGGGTGGCAGGTTCGCCCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGGCCATTGGAGAATCTTGCTGACCCCCTTGCAGATCCAGTTAACACCAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTTTAGATATTATTGTTTTGTGGCTTTGTAAAGTTTTAGTTGTGGGTTTGCTTCCCAAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733144" ref_strand="+" ref_description="SGN-E733144 [LB04AD04]">
      <seq>ccattaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21199" stop="19739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20901" g_stop="20051" g_length="851"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="851" r_length="851" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="900" polyA_stop="918"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733144" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20901" e_stop="20051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAG-ATATTATTGTTTGATGGCTTTGTAAA</genome_strand>
        <mrna_strand>CCATTAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATG-ATCTCTTAAAACGTTCTCAAGTCTCTGGTCGTTTGATGACAGTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734758" ref_strand="+" ref_description="SGN-E734758 [LB13CA11]">
      <seq>ataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggttcattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggccttttgcacaaactttgttccccggcaatgaatatcataaaatgttctctagatattattgtttgatggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21230" stop="19756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20930" g_stop="20056" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734758" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20930" e_stop="20056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTT</genome_strand>
        <mrna_strand>ATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTTCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTTGCACAAACTTTGTTCCCCGGCAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216783" ref_strand="+" ref_description="SGN-E216783 [cLEL-1-O2](-)">
      <seq>actgtcatcaaacgaccagagacatgagaacgttttaagagattcattttccggggacaaagtttgtggcgaaagcccaggcattgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtgacaatagcttgaacaaagaatccaaacatagagaacatagcaagtctaccgttcttgatctcctttaccttgagctcagcaaatgcctctgggtcttcagcaaggcctaatgggtcgaagctgccaccagggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtatccctcaacagctcccatcaacacaacttggcaagcccagatggccaagatgctttgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccttcactgaagatctgggatccggccttgaaccacacagcctcaccgaacttgacgccatcaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="19759" stop="20836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20056" g_stop="20543" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E216783" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20056" e_stop="20543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCATCAAACAATAATAT-CTAGAGAACATTTTATGATATTCATTTGCCGGGAACAAAGTTTGTGGCAAAGGCCCATGCATTGTTGTTAACTGGATCTGCAAGGTGGTCAGCAAGATTCTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCCTCAACAGCTCCCATCAGTACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAAATCTGGGAACCGGCCTTGAACCACACAGCTTCACCAAATTTGACACCATTACGGGCCA</genome_strand>
        <mrna_strand>ACTGTCATCAAACGACCAGAGACATGAGAACGTTTTAAGAGATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAGGCATTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTGACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTATCCCTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCTTCACTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACGCCATCAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731727" ref_strand="+" ref_description="SGN-E731727 [LA28AA10]">
      <seq>aaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctctagatattattgtttgatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21228" stop="19758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20928" g_stop="20058" g_length="871"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="871" r_length="871" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20928" e_stop="20058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCT</genome_strand>
        <mrna_strand>AAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321894" ref_strand="+" ref_description="SGN-E321894 [cTOB-29-L13]">
      <seq>tcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtacaggagattaagaacggcagacttgctatgttctctatggttggattctttgttcaagccattgttaccgcaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaactttgttcccggcaaatgaatatcataaaatgttctctaaatattattggttgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21123" stop="19759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20823" g_stop="20059" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E321894" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20823" e_stop="20059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGC</genome_strand>
        <mrna_strand>TCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTACAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGGTTGGATTCTTTGTTCAAGCCATTGTTACCGCAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCAC-AACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAAATATTATTGGTTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733449" ref_strand="+" ref_description="SGN-E733449 [LB10AB11]">
      <seq>cgcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcctgggctttcgccacaaactttgtccccggaaaatgaatctcttaaaacgttctcaagtctctggtcgtttgatgacagtgtaaagatgtagtgtgctacctgacaatataatgaaattttgtttgtgtttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21170" stop="19739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20872" g_stop="20077" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733449" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20872" e_stop="20077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAG</genome_strand>
        <mrna_strand>CGCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCCTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATCTCTTAAAACGTTCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704197" ref_strand="+" ref_description="SGN-E704197 [FA23CE03]">
      <seq>caatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaatgttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21244" stop="19779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20944" g_stop="20079" g_length="866"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="866" r_length="866" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E704197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20944" e_stop="20079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCT</genome_strand>
        <mrna_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726460" ref_strand="+" ref_description="SGN-E726460 [LA11DE06]">
      <seq>atttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatcgaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaaatgatatcataaaatgttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21240" stop="19779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20940" g_stop="20079" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="862" r_length="862" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726460" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20940" e_stop="20079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCT</genome_strand>
        <mrna_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATCGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAAATGATATCATAAAATGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731658" ref_strand="+" ref_description="SGN-E731658 [LA27DC04]">
      <seq>cagccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttccccgcaatgaatatcataaaatgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21254" stop="19781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20954" g_stop="20081" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731658" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20954" e_stop="20081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCT</genome_strand>
        <mrna_strand>CAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCCGC-AATGAATATCATAAAATGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552581" ref_strand="+" ref_description="SGN-E552581 [cTSB-4-G10]">
      <seq>taaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggagagggtccattggagaatcttgctgaccaccttgcaaatccagttaacaacaatgcatggacctttgccacaaacttttgtcccggcaaatgaatatcataaaatgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20564" stop="19781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20264" g_stop="20081" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E552581" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20264" e_stop="20081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCT</genome_strand>
        <mrna_strand>TAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAGAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAAATCCAGTTAACAACAATGCATGGACCTTTGCCACAAACTTTTGTCCCGGCAAATGAATATCATAAAATGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730615" ref_strand="+" ref_description="SGN-E730615 [LA24CF09]">
      <seq>cctacatagaccataaaatactcaacacttttctcttaatatcattcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaaactttgttcccggcaaatgaatatcataaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21241" stop="19786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20943" g_stop="20086" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730615" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20943" e_stop="20086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAAT</genome_strand>
        <mrna_strand>CCTACAT-AGACCATAAAATACTCAACACTTTTCTCTTAATATCATTCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731011" ref_strand="+" ref_description="SGN-E731011 [LA25DE08]">
      <seq>cccttaatagccctagaagactcaacacttttctcttaatataactcatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtccaactctcaccatctgcctcagaaatttctggaaatgaaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttccacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctctgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggcctttgccacaacctttgttcccggcaaatgaatatcataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21238" stop="19788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20941" g_stop="20088" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731011" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20941" e_stop="20088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTAATA-CCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAA</genome_strand>
        <mrna_strand>CCCTTAATAGCCCTAGAAGACTCAACACTTTTCTCTTAATATAACTCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTCCAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGAAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCCACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTCTGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAACCTTTGTTCCCGGCAAATGAATATCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730504" ref_strand="+" ref_description="SGN-E730504 [LA24BD03]">
      <seq>ccctatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccccgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatgggccctttgccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21244" stop="19818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20946" g_stop="20118" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730504" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20946" e_stop="20118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGG-CCTTTGCCACAA</genome_strand>
        <mrna_strand>CCCTATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCCGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCCTTTGCCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730397" ref_strand="+" ref_description="SGN-E730397 [LA24AA07]">
      <seq>cctccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatggggcctttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21232" stop="19821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20935" g_stop="20121" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730397" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20935" e_stop="20121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCAT-GGGCCTTTGCCA</genome_strand>
        <mrna_strand>CCTCCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGGCCTTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343753" ref_strand="+" ref_description="SGN-E343753 [cTOF-20-L22]">
      <seq>acaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccgnaaagggtccattggagaaatctgctgaccaccttgcagatccagtttacaacaatgcatgggcctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21183" stop="19823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20883" g_stop="20123" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343753" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20883" e_stop="20123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGC</genome_strand>
        <mrna_strand>ACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGNAAAGGGTCCATTGGAGAAATCTGCTGACCACCTTGCAGATCCAGTTTACAACAATGCATGGGCCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282204" ref_strand="+" ref_description="SGN-E282204 [cLES-4-C15]">
      <seq>tgggccatgcttggtgctcttggatgtgtattccccgagcttttggcccgtaatggtgttaagttcggtgaagctgtatggttcaaggctggatcacaaattttcagcgagggtggacttgactacttgggaaacccaagcttggtccatgcacaaagcattttggctatctgggcttgccaagttgtgttgatgggagccgttgagggttaccgtattgctggtgggcctcttggtgaggttgttgacccactctaccctggtggtagctttgacccactgggccttgctgatgacccagaggcttttgctgagctcaaggtaaaagagatcaagaatggtagacttgctatgttctccatgttcggattctttgttcaagctatcgtcaccggaaagggtccattggagaaacttgctgaccatcttgctgatccagtcaataacaatgcttgggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20886" stop="19827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20586" g_stop="20127" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E282204" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20586" e_stop="20127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCT</genome_strand>
        <mrna_strand>TGGGCCATGCTTGGTGCTCTTGGATGTGTATTCCCCGAGCTTTTGGCCCGTAATGGTGTTAAGTTCGGTGAAGCTGTATGGTTCAAGGCTGGATCACAAATTTTCAGCGAGGGTGGACTTGACTACTTGGGAAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCTATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTTGTTGACCCACTCTACCCTGGTGGTAGCTTTGACCCACTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGCTCAAGGTAAAAGAGATCAAGAATGGTAGACTTGCTATGTTCTCCATGTTCGGATTCTTTGTTCAAGCTATCGTCACCGGAAAGGGTCCATTGGAGAAACTTGCTGACCATCTTGCTGATCCAGTCAATAACAATGCTTGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730739" ref_strand="+" ref_description="SGN-E730739 [LA25AB12]">
      <seq>catttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattacgccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21240" stop="19830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20941" g_stop="20130" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20941" e_stop="20130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGG</genome_strand>
        <mrna_strand>CATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTACGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733284" ref_strand="+" ref_description="SGN-E733284 [LB04BH04]">
      <seq>cgccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccagttaacaacaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21252" stop="19834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20953" g_stop="20134" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="820" r_length="820" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733284" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20953" e_stop="20134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCA</genome_strand>
        <mrna_strand>CGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726882" ref_strand="+" ref_description="SGN-E726882 [LA13AD07]">
      <seq>cgcagccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgttaccggaaagggtccattggagaatcttgctgaccaccttgcagatccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21256" stop="19848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20956" g_stop="20148" g_length="809"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="809" r_length="809" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726882" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20956" e_stop="20148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAG</genome_strand>
        <mrna_strand>CGCAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346897" ref_strand="+" ref_description="SGN-E346897 [cTOF-32-O22]">
      <seq>ctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21185" stop="19865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20885" g_stop="20165" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346897" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20885" e_stop="20165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGA</genome_strand>
        <mrna_strand>CTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730482" ref_strand="+" ref_description="SGN-E730482 [LA24BB01]">
      <seq>cgctttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21252" stop="19897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20953" g_stop="20197" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730482" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20953" e_stop="20197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTT</genome_strand>
        <mrna_strand>CGCTTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340867" ref_strand="+" ref_description="SGN-E340867 [cTOF-5-L6]">
      <seq>aatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggtttgtcgacccactctacccaggtggcagcttcgacccattangccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattctttgttcaagccattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21243" stop="19898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20943" g_stop="20198" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340867" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20943" e_stop="20198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGG-TTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGT</genome_strand>
        <mrna_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728217" ref_strand="+" ref_description="SGN-E728217 [LA17AD01]">
      <seq>gccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaagccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21252" stop="19924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20952" g_stop="20224" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728217" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20952" e_stop="20224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATG</genome_strand>
        <mrna_strand>GCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAAGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348246" ref_strand="+" ref_description="SGN-E348246 [cTOF-27-E24]">
      <seq>ttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgaccccattagccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21249" stop="19927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20949" g_stop="20227" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E348246" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20949" e_stop="20227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGA-CCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCT</genome_strand>
        <mrna_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCCATTA-GCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727964" ref_strand="+" ref_description="SGN-E727964 [LA16BB05]">
      <seq>cacccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21254" stop="19929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20954" g_stop="20229" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727964" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20954" e_stop="20229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCT</genome_strand>
        <mrna_strand>CACCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347113" ref_strand="+" ref_description="SGN-E347113 [cTOF-25-N24]">
      <seq>aacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagaccccggagcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21246" stop="19934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20946" g_stop="20234" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347113" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20946" e_stop="20234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTAT</genome_strand>
        <mrna_strand>AACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGGAGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344445" ref_strand="+" ref_description="SGN-E344445 [cTOF-14-G22]">
      <seq>aacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattangccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21246" stop="19934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20946" g_stop="20234" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E344445" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20946" e_stop="20234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTAT</genome_strand>
        <mrna_strand>AACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288200" ref_strand="+" ref_description="SGN-E288200 [cLES-7-H8]">
      <seq>gcagctgctacaatggctctttcttccccttcatttctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaagcatttgctgagctcaaggtaaaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21192" stop="19955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20892" g_stop="20255" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E288200" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20892" e_stop="20255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGAT</genome_strand>
        <mrna_strand>GCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTT-CTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAAGCATTTGCTGAGCTCAAGGTAAAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346263" ref_strand="+" ref_description="SGN-E346263 [cTOF-23-B15]">
      <seq>ttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttganggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattangccttgctgaagaccccgnagcatttgctgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21249" stop="19969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20949" g_stop="20269" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346263" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20949" e_stop="20269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTC</genome_strand>
        <mrna_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGANGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGNAGCATTTGCTGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348379" ref_strand="+" ref_description="SGN-E348379 [cTOF-27-C18]">
      <seq>caatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattaggccttgctgaagacccggagcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21244" stop="19970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20944" g_stop="20270" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E348379" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20944" e_stop="20270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGA-GCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345659" ref_strand="+" ref_description="SGN-E345659 [cTOF-18-O4]">
      <seq>agccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaaggttgtcgacccactctacccaggtggcagcttcgacccattangccttgctgaagaacccgnagcatttgctgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21253" stop="19971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20953" g_stop="20271" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345659" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20953" e_stop="20271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTG-AGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGC</genome_strand>
        <mrna_strand>AGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGAACCCGNAGCATTTGCTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332015" ref_strand="+" ref_description="SGN-E332015 [cTOD-16-D8]">
      <seq>tttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccangtggcagcttcgacccattaggccttgctgaagacccggaggcatttgctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21239" stop="19972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20939" g_stop="20272" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E332015" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20939" e_stop="20272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAG</genome_strand>
        <mrna_strand>TTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCANGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728111" ref_strand="+" ref_description="SGN-E728111 [LA16DA01]">
      <seq>ccttcttcaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagcttcgacccattangccttttgctgagaccggaggcatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21251" stop="8108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20951" g_stop="20274" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728111" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20951" e_stop="20274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGA-CCCGGAGGCATTTGCTG</genome_strand>
        <mrna_strand>CCTTCTTCAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTANGCCTT-TTGCTGAGACCGGAGGCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465015" ref_strand="+" ref_description="SGN-E465015 [cPRO-19-H22]">
      <seq>atttcataccatcaaacactcaacacttttctcttaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacagtcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactatggatgggataccgctggactttcagcagaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtattgatgggagccgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgaaccattangtcttgctgaagacccagaggcatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21240" stop="19974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20940" g_stop="20274" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E465015" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20940" e_stop="20274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTG</genome_strand>
        <mrna_strand>ATTTCATACCATCAAACACTCAACACTTTTCTCTTAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGTCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTATTGATGGGAGCCGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGAACCATTANGTCTTGCTGAAGACCCAGAGGCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348382" ref_strand="+" ref_description="SGN-E348382 [cTOF-27-G18]">
      <seq>caatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgacggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21244" stop="20016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20944" g_stop="20316" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E348382" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20944" e_stop="20316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCT</genome_strand>
        <mrna_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGACGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287114" ref_strand="+" ref_description="SGN-E287114 [cLES-6-O17]">
      <seq>tcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacgggaggtgatccactgcagatgggctatgcttggagctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21248" stop="20026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20948" g_stop="20326" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E287114" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20948" e_stop="20326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCA</genome_strand>
        <mrna_strand>TCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACGGGAGGTGATCCACTGCAGATGGGCTATGCTTGGAGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203021" ref_strand="+" ref_description="SGN-E203021 [cLEB-1-L6]">
      <seq>gcacgaggccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctgggggacctcttggtgaggttgtcgacccactctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21078" stop="20029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20785" g_stop="20329" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E203021" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20785" e_stop="20329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTAC</genome_strand>
        <mrna_strand>GCACGAGGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGGGGACCTCTTGGTGAGGTTGTCGACCCACTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347200" ref_strand="+" ref_description="SGN-E347200 [cTOF-25-O2]">
      <seq>atatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggtggacctcttggtgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21242" stop="20046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20942" g_stop="20346" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347200" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20942" e_stop="20346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGG</genome_strand>
        <mrna_strand>ATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401787" ref_strand="+" ref_description="SGN-E401787 [PPC-5-E22]">
      <seq>ctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagtggtattgatggnagccgttgagggttaccgtattgctggtggacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21188" stop="20055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20888" g_stop="20355" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E401787" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20888" e_stop="20355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTC</genome_strand>
        <mrna_strand>CTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTGGTATTGATGGNAGCCGTTGAGGGTTACCGTATTGCTGGTGGACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346907" ref_strand="+" ref_description="SGN-E346907 [cTOF-32-F5]">
      <seq>ttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21249" stop="20062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20949" g_stop="20362" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346907" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20949" e_stop="20362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGT</genome_strand>
        <mrna_strand>TTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343677" ref_strand="+" ref_description="SGN-E343677 [cTOF-20-E18]">
      <seq>ccttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttaccgtattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21251" stop="20064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20951" g_stop="20364" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343677" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20951" e_stop="20364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTG</genome_strand>
        <mrna_strand>CCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470555" ref_strand="+" ref_description="SGN-E470555 [cSTB-18-N9]">
      <seq>atttcataccatcaaacactcaacacttttctcttaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgcccccatctagcagcccatggtatggccctgaccgtgttaagtaccttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggatacccgctggacctttcagcagacccctgagaccctttgccaagaaccgtgaaccttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagcctcttggcccgtaacggtgtcaagttcggcgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcccaaagcatcttggccatttgggcttgccaagttgtgttaatgggagctgttgagggataccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21240" stop="20070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20940" g_stop="20370" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E470555" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20940" e_stop="20370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTG-CCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTA-CTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATA-CCGCTGGA-CTTTCAGCTGACCCC-GAGA-CCTTTGCCAAGAACCGTGAA-CTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAG-CTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTA</genome_strand>
        <mrna_strand>ATTTCATACCATCAAACACTCAACACTTTTCTCTTAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACCTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCCGCTGGACCTTTCAGCAGACCCCTGAGACCCTTTGCCAAGAACCGTGAACCTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCCTCTTGGCCCGTAACGGTGTCAAGTTCGGCGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCCCAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTAATGGGAGCTGTTGAGGGATACCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370512" ref_strand="+" ref_description="SGN-E370512 [TUS-29-K13]">
      <seq>tatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21241" stop="20073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20941" g_stop="20373" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E370512" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20941" e_stop="20373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACC</genome_strand>
        <mrna_strand>TATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342994" ref_strand="+" ref_description="SGN-E342994 [cTOF-11-A23]">
      <seq>caatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21244" stop="20076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20944" g_stop="20376" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342994" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20944" e_stop="20376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTT</genome_strand>
        <mrna_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728996" ref_strand="+" ref_description="SGN-E728996 [LA19CE11]">
      <seq>gaggaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagattttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgtcaagttgtactgatgggagctgttgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21243" stop="20079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20947" g_stop="20379" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728996" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20947" e_stop="20379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGG</genome_strand>
        <mrna_strand>GAGGAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726110" ref_strand="+" ref_description="SGN-E726110 [LA10BD09]">
      <seq>cttcaacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgtggttcaaggccggttcccagatttcagcgagggtggacttgctacttgggcaacccagcttngtcatgcacaagcatctngccatctggcttgtcaagtgactgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21250" stop="20091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20950" g_stop="20391" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726110" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20950" e_stop="20391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGG</genome_strand>
        <mrna_strand>CTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGA-TTTCAGCGAGGGTGGACTTG-CTACTTGGGCAACCC-AGCTTNGT-CATGCAC-AAGCATC-TNGCCATCT-GGCTTGTCAAG-TG-ACTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345022" ref_strand="+" ref_description="SGN-E345022 [cTOF-22-N9]">
      <seq>caatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcaactgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgcaatggtgtcaaatttggtgaagctgtgtggctcaaggccgggtcccacattttcagcgacggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatgatggccatctgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21244" stop="20109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20944" g_stop="20409" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345022" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20944" e_stop="20409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTT</genome_strand>
        <mrna_strand>CAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAACTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGCAATGGTGTCAAATTTGGTGAAGCTGTGTGGCTCAAGGCCGGGTCCCACATTTTCAGCGACGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATGATGGCCATCTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729053" ref_strand="+" ref_description="SGN-E729053 [LA19DC11]">
      <seq>caacaatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaagaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccccgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaaaggcgtcaaatttggagaagctgtgtggttcaaggccggttcccagatcttcagcgagggtggactcgactacttgggcaacccaagcttggtccatcgcacaaagcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21247" stop="20123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20947" g_stop="20423" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729053" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20947" e_stop="20423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCAT-GCACAAAGCATCTT</genome_strand>
        <mrna_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAAAGGCGTCAAATTTGGAGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATCTTCAGCGAGGGTGGACTCGACTACTTGGGCAACCCAAGCTTGGTCCATCGCACAAAGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280515" ref_strand="+" ref_description="SGN-E280515 [cLER-1-M13]">
      <seq>atttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaaattggtgaagctgtgtggttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21240" stop="20202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20940" g_stop="20502" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280515" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20940" e_stop="20502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCA</genome_strand>
        <mrna_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAAATTGGTGAAGCTGTGTGGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281560" ref_strand="+" ref_description="SGN-E281560 [cLEL-1-D16](-)">
      <seq>cacacagcttcaccaaatttgacaccattacgggccaagagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcaagttcacggttcttggcaaaggtctcagggtcagctgaaagtccagcggtatcccatccatagtcaccagggaattcgccagtcaagtagcttggtgactcaccagagaatggtcccaagtacttaacacggtcagggccataccatgggctgctagatggggcagacttggcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="20207" stop="21078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20507" g_stop="20785" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E281560" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20507" e_stop="20785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAGCTTCACCAAATTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAGGTCTCGGGGTCAGCTGAAAGTCCAGCGGTATCCCATCCATAGTCACCAGGGAATTCGCCAGTCAAGTAGCTTGGTGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCC</genome_strand>
        <mrna_strand>CACACAGCTTCACCAAATTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCAGCTGAAAGTCCAGCGGTATCCCATCCATAGTCACCAGGGAATTCGCCAGTCAAGTAGCTTGGTGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280957" ref_strand="+" ref_description="SGN-E280957 [cLER-7-K1]">
      <seq>atactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtgaagctgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21225" stop="20208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20925" g_stop="20508" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280957" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20925" e_stop="20508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGT</genome_strand>
        <mrna_strand>ATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321010" ref_strand="+" ref_description="SGN-E321010 [cTOB-13-L3]">
      <seq>aatatttaataccataaaatactcaacacttttctcttaatataaatcatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagctgaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaaatttggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21243" stop="20216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20943" g_stop="20516" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E321010" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20943" e_stop="20516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGA</genome_strand>
        <mrna_strand>AATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476772" ref_strand="+" ref_description="SGN-E476772 [cSTB-45-N8]">
      <seq>catcaaacactcaacacttttctcttaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagcagaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21231" stop="20234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20931" g_stop="20533" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E476772" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20931" e_stop="20533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAAT</genome_strand>
        <mrna_strand>CATCAAACACTCAACACTTTTCTCTTAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401172" ref_strand="+" ref_description="SGN-E401172 [PPC-3-E10]">
      <seq>caacacttttctcttaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagcagaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21220" stop="20242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20920" g_stop="20542" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E401172" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20920" e_stop="20542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTG</genome_strand>
        <mrna_strand>CAACACTTTTCTCTTAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472116" ref_strand="+" ref_description="SGN-E472116 [cSTB-27-F17]">
      <seq>caacaatatttcataccatcaaacactcaacacttttctcttaaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21247" stop="20244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20947" g_stop="20544" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E472116" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20947" e_stop="20544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTA-ATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</genome_strand>
        <mrna_strand>CAACAATATTTCATACCATCAAACACTCAACACTTTTCTCTTAAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471494" ref_strand="+" ref_description="SGN-E471494 [cSTB-24-O15]">
      <seq>atatttcataccatcaaacactcaacacttttctcttaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggataccgctggactttcagcagaccctgagacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggcaatgcttggtgctcttggatgtgtcttccctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21242" stop="20244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20942" g_stop="20544" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E471494" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20942" e_stop="20544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</genome_strand>
        <mrna_strand>ATATTTCATACCATCAAACACTCAACACTTTTCTCTTAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCAATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318920" ref_strand="+" ref_description="SGN-E318920 [cTOB-11-P15]">
      <seq>ataaaatactcaacactattgtattaatatgaaatcatggcagctgctacaatggctctttattccccttcatttgctggacaggcagtcaaactctcaccatctgcctcaaaaatttctggaaatggaaggatcactatgagaaaggctgtcgacaagtctgccccatctagcaacccatggtatggccctgaccgtgttaagtacttgggaccattctctggtgagtcaccaagcttctagactggcgaataccctggtgactatggatgggataccgctggactttcagctgaccctgatacctttgccaataaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgagtcttccctgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21230" stop="20244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20930" g_stop="20544" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E318920" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20930" e_stop="20544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATACTCAACACTTTTCTCTTAATAT-AAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCT</genome_strand>
        <mrna_strand>ATAAAATACTCAACACTATTGTATTAATATGAAATCATGGCAGCTGCTACAATGGCTCTTTATTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAAAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGACAAGTCTGCCCCATCTAGCAACCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTTCTAGACTGGCGAATACCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCTGATACCTTTGCCAATAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGAGTCTTCCCTGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472949" ref_strand="+" ref_description="SGN-E472949 [cSTB-30-D13]">
      <seq>gctggacaggcagcgaaactatcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctcggcgctattccgccccatctagcaccccatgggatggccctgaccgtgttaagtacttgggcccattctatggcgagtccccaagctactagactggcgaattccctggtgactatggatcggataccgctggactttcaccagaccctgaaacctttgccaagaaccatgaacttgaggtgatccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21156" stop="20291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20856" g_stop="20591" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E472949" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20856" e_stop="20591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCT-GTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTG</genome_strand>
        <mrna_strand>GCTGGACAGGCAGCGAAACTATCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTCGGCG-CTATTCCGCCCCATCTAGCACCCCATGGGATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTATGGCGAGTCCCCAAGCTACTAGACTGGCGAATTCCCTGGTGACTATGGATCGGATACCGCTGGACTTTCACCAGACCCTGAAACCTTTGCCAAGAACCATGAACTTGAGGTGATCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474332" ref_strand="+" ref_description="SGN-E474332 [cSTB-36-M15]">
      <seq>atttcataccatcaaacactcaacacttttctcttaaatctaaatcatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactttcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactatggatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21240" stop="20356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20940" g_stop="20656" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E474332" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20940" e_stop="20656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATACCATAAAATACTCAACACTTTTCTCTT-AATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGAT</genome_strand>
        <mrna_strand>ATTTCATACCATCAAACACTCAACACTTTTCTCTTAAATCTAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTTTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234877" ref_strand="+" ref_description="SGN-E234877 [cLEL-6-B3](-)">
      <seq>aaggtaaaggagattaagagcggcagccttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgacccccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgcccctttcatcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22896" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22596" g_stop="22221" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E234877" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22596" e_stop="22221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAAAGAGAACAGAACAAAAAAGAGTGAAGATACAT</genome_strand>
        <mrna_strand>AAGGTAAAGGAGATTAAGAGCGGCAGCCTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCCCCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCCCTTTCATCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219787" ref_strand="+" ref_description="SGN-E219787 [cLEL-24-E14](-)">
      <seq>gttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccgctttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23031" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22731" g_stop="22251" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E219787" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22731" e_stop="22251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAAAG</genome_strand>
        <mrna_strand>GTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219931" ref_strand="+" ref_description="SGN-E219931 [cLEL-24-E14](-)">
      <seq>aggccttgctgaagaccccgagggcatttgctgagctcaaggtaaaggagattaagaacggcagacctgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgcccctttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22933" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22633" g_stop="22251" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E219931" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22633" e_stop="22251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCTTGCTGAAGACCCCGA-GGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAAAG</genome_strand>
        <mrna_strand>AGGCCTTGCTGAAGACCCCGAGGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACCTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224801" ref_strand="+" ref_description="SGN-E224801 [cLEL-27-D1](-)">
      <seq>atttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccnctttcataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22909" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22609" g_stop="22251" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E224801" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22609" e_stop="22251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAAAG</genome_strand>
        <mrna_strand>ATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCNCTTTCATAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224445" ref_strand="+" ref_description="SGN-E224445 [cLEL-27-D1](-)">
      <seq>aaccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtagagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccgctttcctcccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22736" stop="14572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22438" g_stop="22251" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E224445" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22438" e_stop="22251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAAAG</genome_strand>
        <mrna_strand>AACCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAGAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCGCTTTCCTCCCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732632" ref_strand="+" ref_description="SGN-E732632 [LB02CH02]">
      <seq>cattaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtcccccggaaatgaatatcataatatattttttgaaattttgattgntaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23560" stop="22093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23265" g_stop="22396" g_length="870"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="870" r_length="870" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22395" i_stop="22267" i_length="129">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.492" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22266" g_stop="22252" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="885" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732632" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23265" e_stop="22396"/>
          <exon e_start="22266" e_stop="22252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTG-AATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAAA</genome_strand>
        <mrna_strand>CAT-TAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCCGGAAATGAATATCATAATATATTTTTTGAAATTTTGATT.................................................................................................................................GNTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236783" ref_strand="+" ref_description="SGN-E236783 [cLEL-7-D5](-)">
      <seq>agttgtcttatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcatcccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23032" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22732" g_stop="22252" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E236783" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22732" e_stop="22252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAAA</genome_strand>
        <mrna_strand>AGTTGTCTT-ATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATCCCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236898" ref_strand="+" ref_description="SGN-E236898 [cLEL-7-D5](-)">
      <seq>cgtattgctggtggacctcttggtaggttgtcgaccccactctacccggtggcagcttcgacccattaggccttgctgaagaccccnaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttanacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcataccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23001" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22701" g_stop="22252" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E236898" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22701" e_stop="22252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGA-CCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTA-ACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAAA</genome_strand>
        <mrna_strand>CGTATTGCTGGTGGACCTCTTGGT-AGGTTGTCGACCCCACTCTA-CCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCNAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTANACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219377" ref_strand="+" ref_description="SGN-E219377 [cLEL-11-G6](-)">
      <seq>ggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcataccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22992" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22692" g_stop="22253" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E219377" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22692" e_stop="22253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAA</genome_strand>
        <mrna_strand>GGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219298" ref_strand="+" ref_description="SGN-E219298 [cLEL-11-G6](-)">
      <seq>ggaaagggtccattggagaactctttctgaccacacttgcaggccccgtggtcaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattccctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcataccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22821" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22521" g_stop="22256" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E219298" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22521" e_stop="22256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGGTCCATTGGAGAAC-CTTGCTGACCAC-CTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATT-CCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAA</genome_strand>
        <mrna_strand>GGAAAGGGTCCATTGGAGAACTCTTTCTGACCACACTTGCAGGCCCCGTGGTCAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710100" ref_strand="+" ref_description="SGN-E710100 [FA54AH02]">
      <seq>ctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaattcctatgattgtgtaggtctgaattacattttcccaagctatgaatccaatattgccactttcataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23538" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23238" g_stop="22257" g_length="982"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="982" r_length="982" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E710100" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>982</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23238" e_stop="22257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTG-AATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAA</genome_strand>
        <mrna_strand>CTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGGTCTGAATTACATTTTCCCAAGCTATGAATCCAATATTGCCACTTTCATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739668" ref_strand="+" ref_description="SGN-E739668 [LC18BE12]">
      <seq>ctcttcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcnnnnnanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23272" stop="21976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22972" g_stop="22257" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E739668" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22972" e_stop="22257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAA</genome_strand>
        <mrna_strand>CTCTTCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCNNNNNANAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218175" ref_strand="+" ref_description="SGN-E218175 [cLEL-23-N10](-)">
      <seq>gtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacctgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23000" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22700" g_stop="22257" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E218175" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22700" e_stop="22257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAA</genome_strand>
        <mrna_strand>GTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACCTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221043" ref_strand="+" ref_description="SGN-E221043 [cLEL-22-M9](-)">
      <seq>tgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctccaggtaaaggagattaagaacggcagacctgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22996" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22696" g_stop="22257" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E221043" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22696" e_stop="22257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAA</genome_strand>
        <mrna_strand>TGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCCAGGTAAAGGAGATTAAGAACGGCAGACCTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217313" ref_strand="+" ref_description="SGN-E217313 [cLEL-21-H16](-)">
      <seq>gcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacctgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccctgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22949" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22649" g_stop="22257" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E217313" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22649" e_stop="22257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAA</genome_strand>
        <mrna_strand>GCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACCTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCCTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433622" ref_strand="+" ref_description="SGN-E433622 [STM-58-B24]">
      <seq>caatcttttttttggatgaaagtggcaatatttgattcgtagctttggaaaatgtaactcagaactacacaatcattggaatgtggaaaaaagaaccattctattatcaagtaagtcacaactactttacagggccatcgaacaatcaaaattcaaaaattatattatgatattcattttccggggacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaattgcctgaacgaagaatccaaacatagagaacatagcaagtctgccgttcttaatctcctttaccttgagctcagcaaatgcctccgggtcttcagcaaggcctaatgggtcaaagctgccaccagggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtaaccttcaacggctcccatcaagacaacttggcaagcccagatggccaagatgctctgtgcatggaccaagcttgggttgcccaagtagtcaagtcctccctcgctgaagatctgggatccggccttgaaccacacagcctcaccgaacttgacaccattacgggccaacagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcgagttcacggttcttggcaaaggtttcagggtctgctgaaagtccagcggtatcccacccatagtcaccanggaattcaccggtcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="10093" stop="23320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22258" g_stop="23020" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E433622" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22258" e_stop="23020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCCCTTTGGTATGAAAGTGGCAATATTTGATTCATAGCTTTGGAAAATGTAACTCAGAACTACACAATCATAGGAATTTTGAAAAAA-AA--A-TCCA-T-TCTATTAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCTAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAAG</genome_strand>
        <mrna_strand>CAATCTTTTTTTTGG-ATGAAAGTGGCAATATTTGATTCGTAGCTTTGGAAAATGTAACTCAGAACTACACAATCATTGGAATGTGGAAAAAAGAACCATTCTATTATCAAGTAAGTCACAACTACTTTACAGGGCCATCGAACAATCAAAATTCAAAAATTATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATTGCCTGAACGAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCAAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAACAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCATAGTCACCANGGAATTCACCGGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734988" ref_strand="+" ref_description="SGN-E734988 [LB14AE07]">
      <seq>cgttggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcataccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23281" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22981" g_stop="22259" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734988" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22981" e_stop="22259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATT</genome_strand>
        <mrna_strand>CGTTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217237" ref_strand="+" ref_description="SGN-E217237 [cLEL-21-J17](-)">
      <seq>gtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23000" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22700" g_stop="22259" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E217237" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22700" e_stop="22259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATT</genome_strand>
        <mrna_strand>GTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403855" ref_strand="+" ref_description="SGN-E403855 [PPC-11-N16]">
      <seq>cttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagctttgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattcttcgttcaggcaattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatataatttttgaattttgattgttcgatggccctgtaaagtagttgtgacttacttgataatagaatggttctttttttcacattccnatgattgtgtagttctgagttacattttccaaagctacgaatcaaatattgccactttcataccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23320" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23020" g_stop="22261" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E403855" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23020" e_stop="22261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTA-AT-AGAAT-GGAT--TT-TTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAA</genome_strand>
        <mrna_strand>CTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCAATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATAATTTTTGAATTTTGATTGTTCGATGGCCCTGTAAAGTAGTTGTGACTTACTTGATAATAGAATGGTTCTTTTTTTCACATTCCNATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTACGAATCAAATATTGCCACTTTCATACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342364" ref_strand="+" ref_description="SGN-E342364 [cTOF-8-H8]">
      <seq>gtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatgganttttttttcaaaattcctatgattgtgtagttctgagttactttttccaaagctatgaatcaaatattgccactttcataccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23070" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22770" g_stop="22262" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E342364" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22770" e_stop="22262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAA</genome_strand>
        <mrna_strand>GTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGANTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACTTTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280322" ref_strand="+" ref_description="SGN-E280322 [cLER-1-M5](-)">
      <seq>tgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23140" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22840" g_stop="22263" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280322" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22840" e_stop="22263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGA</genome_strand>
        <mrna_strand>TGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286892" ref_strand="+" ref_description="SGN-E286892 [cLES-14-J24]">
      <seq>atctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23046" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22746" g_stop="22263" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E286892" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22746" e_stop="22263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGA</genome_strand>
        <mrna_strand>ATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320052" ref_strand="+" ref_description="SGN-E320052 [cTOB-21-K23]">
      <seq>tcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23027" stop="21968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22727" g_stop="22263" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E320052" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22727" e_stop="22263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGA</genome_strand>
        <mrna_strand>TCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286108" ref_strand="+" ref_description="SGN-E286108 [cLES-13-D7]">
      <seq>tttttttttaaagtggcaatatttgattcatagctttggaaaatgtaactcagaactacacaatcataggaattttgaaaaaaaaatccattctatgaagtcacaactactttacagggccatcaaacaatcaaaattcaaaaaatatattatgatattcattttccggggacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaatggcctgaacaaagaatccgaacatagagaacatagcaagtctgccgttcttaatctcctttaccttgagctcagcaaatgcctcggggtcttcagcaaggcctaatgggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="21968" stop="22942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22268" g_stop="22642" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E286108" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22268" e_stop="22642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTATGAAAGTGGCAATATTTGATTCATAGCTTTGGAAAATGTAACTCAGAACTACACAATCATAGGAATTTTGAAAAAAAAATCCATTCTATTAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCG</genome_strand>
        <mrna_strand>TTTTTTTTTAAAGTGGCAATATTTGATTCATAGCTTTGGAAAATGTAACTCAGAACTACACAATCATAGGAATTTTGAAAAAAAAATCCATTCTATGAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278038" ref_strand="+" ref_description="SGN-E278038 [cLER-4-A21]">
      <seq>gtgaggctgtgtggttcaaggtcggatcccaaatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatgtgggcttgccaagttgtcttgatgggagccgtggaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaagggaaaggagattaataacgggagacttgctatgttctctatgttcggattctgtgttcaggccattgttaccggaaagggtccattggagaaccatgctgaccacctttgagacccggataacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattgattgaatttcgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttctttgaaaattcctatgattgcgtagttctgagttacattttccaaagctatgaatcaaatattgccactttcatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23147" stop="21971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22847" g_stop="22271" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E278038" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22847" e_stop="22271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACC</genome_strand>
        <mrna_strand>GTGAGGCTGTGTGGTTCAAGGTCGGATCCCAAATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATGTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTGGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGGAAAGGAGATTAATAACGGGAGACTTGCTATGTTCTCTATGTTCGGATTCTGTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCATGCTGACCACCTTTGAGACCCGGATAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTGATTGAATTTCGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTCTTTGAAAATTCCTATGATTGCGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223388" ref_strand="+" ref_description="SGN-E223388 [cLEL-14-O6](-)">
      <seq>gattctttgttcaggccattgtaaccggagagggtccattggagaaccttgctgaccgccttgcagaccccgttaacagcaacgcgtgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaattcctatgattgtgtagttctgagttacattttccaaagctatgaatcaaatattgcccctttcaggagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22847" stop="21975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22547" g_stop="22276" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="276" polyA_stop="289"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E223388" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22547" e_stop="22276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTC</genome_strand>
        <mrna_strand>GATTCTTTGTTCAGGCCATTGTAACCGGAGAGGGTCCATTGGAGAACCTTGCTGACCGCCTTGCAGACCCCGTTAACAGCAACGCGTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726436" ref_strand="+" ref_description="SGN-E726436 [LA11DC02]">
      <seq>agcaactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaaattttgattgtttgatgcccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaatcctantgatgtgtagttctgagttacattttccaagctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23556" stop="21987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23256" g_stop="22287" g_length="970"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="968" r_length="968" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726436" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>970</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23256" e_stop="22287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTG-AATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATA</genome_strand>
        <mrna_strand>AGCAACTCCCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAAATTTTGATTGTTTGATGCCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAA-TCCTANTGATGTGTAGTTCTGAGTTACATTTTCC-AAGCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735007" ref_strand="+" ref_description="SGN-E735007 [LB14AG02]">
      <seq>tttacatatcaaactagcaactccctcattttcctctcttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaataaaatggattttttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23571" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23271" g_stop="22331" g_length="941"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="939" r_length="939" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E735007" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23271" e_stop="22331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGA</genome_strand>
        <mrna_strand>TTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTC-TTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAAAATGGA-TTTTTTTTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733332" ref_strand="+" ref_description="SGN-E733332 [LB04CD04]">
      <seq>cattaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattatgccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaactttgtccccggaaaatgaatatcataatatattttttgaatttttgattgttgatggccctgaaaagtaattgtgacttaataaaatggatttttttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23560" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23265" g_stop="22331" g_length="935"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="933" r_length="933" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733332" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>935</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23265" e_stop="22331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAA-TTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGA</genome_strand>
        <mrna_strand>CAT-TAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTATGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCAC-AACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTTGATTG-TTGATGGCCCTGAAAAGTAATTGTGACTTAATAAAATGGATTTTTTTTTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706421" ref_strand="+" ref_description="SGN-E706421 [FA29DF08]">
      <seq>ctagcaactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaatttttaatgttttgatggccctgtaaagtaattgtgactttaataaaatggatttttttttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23558" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23258" g_stop="22331" g_length="928"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="929" r_length="929" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E706421" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23258" e_stop="22331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTG-TTTGATGGCCCTGTAAAGTAGTTGTGAC-TTAATAGAATGGATTTTTTTTTCAAAATTCCTATGA</genome_strand>
        <mrna_strand>CTAGCAACTCCCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTTAATGTTTTGATGGCCCTGTAAAGTAATTGTGACTTTAATAAAATGGATTTTTTTTTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729537" ref_strand="+" ref_description="SGN-E729537 [LA21BE01]">
      <seq>atcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggcttttcgcacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23264" g_stop="22332" g_length="933"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="933" r_length="933" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729537" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23264" e_stop="22332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATG</genome_strand>
        <mrna_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTCGCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736111" ref_strand="+" ref_description="SGN-E736111 [LC04BF04]">
      <seq>ggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaattcctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23521" stop="22032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23221" g_stop="22332" g_length="890"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="890" r_length="890" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E736111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23221" e_stop="22332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATG</genome_strand>
        <mrna_strand>GGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734795" ref_strand="+" ref_description="SGN-E734795 [LB13CD12]">
      <seq>aaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgatatcataatatatttttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggattttttttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23529" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23229" g_stop="22333" g_length="897"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="898" r_length="898" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734795" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23229" e_stop="22333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATT-TTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGA-TTTTTTTTTCAAAATTCCTAT</genome_strand>
        <mrna_strand>AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATG-ATATCATAATATATTTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738412" ref_strand="+" ref_description="SGN-E738412 [LC13CB11]">
      <seq>caattacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23358" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23059" g_stop="22333" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E738412" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23059" e_stop="22333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTAT</genome_strand>
        <mrna_strand>CAATTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391440" ref_strand="+" ref_description="SGN-E391440 [TUS-48-N16](-)">
      <seq>cttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23320" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23020" g_stop="22333" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E391440" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23020" e_stop="22333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTAT</genome_strand>
        <mrna_strand>CTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716714" ref_strand="+" ref_description="SGN-E716714 [FB17DD01]">
      <seq>gtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23157" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22857" g_stop="22333" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E716714" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22857" e_stop="22333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTAT</genome_strand>
        <mrna_strand>GTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731318" ref_strand="+" ref_description="SGN-E731318 [LA26DB02]">
      <seq>gctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23412" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23112" g_stop="22334" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731318" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23112" e_stop="22334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTA</genome_strand>
        <mrna_strand>GCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295149" ref_strand="+" ref_description="SGN-E295149 [cLET-20-B9]">
      <seq>ccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22916" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22616" g_stop="22334" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295149" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22616" e_stop="22334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTA</genome_strand>
        <mrna_strand>CCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732882" ref_strand="+" ref_description="SGN-E732882 [LB03BF02]">
      <seq>gtgtaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23472" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23172" g_stop="22335" g_length="838"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="838" r_length="838" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732882" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23172" e_stop="22335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCT</genome_strand>
        <mrna_strand>GTGTAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297167" ref_strand="+" ref_description="SGN-E297167 [cLET-29-E10]">
      <seq>ttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatatttttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcacaatttccnnaaacaaacaaaaaacaaaccagcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23030" stop="22036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22730" g_stop="22335" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E297167" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22730" e_stop="22335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATA-TTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCT</genome_strand>
        <mrna_strand>TTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCACAATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286866" ref_strand="+" ref_description="SGN-E286866 [cLES-14-B24]">
      <seq>ttttttttgaaaaaaaaatccattctatgaagtcacaactactttacagggccatcaaacaatcaaaattcaaaaaatatattatgatattcattttccggggacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttcttcaatggaccctttccggtaacaatggcctgaacaaagaatccgaacatagagaacatagcaagtctgccgttcttaatctcctttaccttgagctcagcaaatgcctcggggtcttcagcaaggcctaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtgaccttcaacggctcccatcaagacaacttggcaagcccagatggccaagatgctctgtgcatggaccaagcttgggttgcccaagtagtcaagtcctccctcgctgaagatctgggatccggccttgaaccacacagcctcaccgaacttgacaccgttacgggccaatagctcagggaagacacattcaagagcaccaagcatagcccatctgcagtggatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22040" stop="23230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22336" g_stop="22930" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E286866" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22336" e_stop="22930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTTTGAAAAAAAAATCCATTCTATTAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCTAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACC</genome_strand>
        <mrna_strand>TTTTTTTTGAAAAAAAAATCCATTCTATGAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTTCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTGACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATTCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329682" ref_strand="+" ref_description="SGN-E329682 [cTOD-3-P19]">
      <seq>tttttttgaaaaaaaaatccattctatgaagtcacaactactttacagggccatcaaacaatcaaaattcaaaaaatatattatgatattcattttccggggacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaatggcctgaacaaagaatccgaacatagagaacatagcaagtctgccgttcttaatctcctttaccttgagctcagcaaatgcctcggggtcttcagcaaggcctaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtaaccttcaacggctcccatcaagacaacttggcaagcccagatggccaagatgctctgtgcatggaccaagcttgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22040" stop="23082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22337" g_stop="22782" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E329682" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22337" e_stop="22782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTGAAAAAAAAATCCATTCTATTAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCTAAGATGCTCTGTGCATGGACCAAGCTTGGGTT</genome_strand>
        <mrna_strand>TTTTTTTGAAAAAAAAATCCATTCTATGAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283824" ref_strand="+" ref_description="SGN-E283824 [cLES-1-H4]">
      <seq>ttttttgaaaaaaaaatccattctatgaagtcacaactactttacagggccatcaaacaatcaaaattcaaaaaatatattatgatattcattttccggggacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaatggcctgaacaaagaatccgaacatagagaacatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22040" stop="22865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22338" g_stop="22564" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E283824" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22338" e_stop="22564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGAAAAAAAAATCCATTCTATTAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATA</genome_strand>
        <mrna_strand>TTTTTTGAAAAAAAAATCCATTCTATGAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578330" ref_strand="+" ref_description="SGN-E578330 [LE12CD08]">
      <seq>ttttgaaaaaaaaatccattctattaagtcacaactactttacagggccatcaaacaatcaaaattcaaaaaatatattatgatattcattttccggggacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaatggcctgaacaaagaatccgaacatagagaacatagcaagtctgccgttcttaatctcctttaccttgagctcagcaaatgcctcggggtcttcagcaaggcctaatgggtcgaagctgccaccggggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtaaccttcaacggctcccatcaagacaacttggcaagcccagatggctaagatgctctgtgcatggaccaagcttgggttgcccaagtagtcaagtcctccctcgctgaagatctgggatccggccttgaaccacacagcctcaccgaacttgacaccgttacgggccaatagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcgagttcacggttcttggcaaaggtttcagggtctgctgagagtccagcggtatcccagccgtagtcaccagagaatncaccagtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22040" stop="23369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22340" g_stop="23069" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E578330" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22340" e_stop="23069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAAAAAAAATCCATTCTATTAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCTAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAG</genome_strand>
        <mrna_strand>TTTTGAAAAAAAAATCCATTCTATTAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCTAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGAGAATNCACCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740979" ref_strand="+" ref_description="SGN-E740979 [LC23CH10]">
      <seq>cgctactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23559" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22341" g_length="923"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="922" r_length="922" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="923" polyA_stop="935"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E740979" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>923</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>CGCTACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAAC-ACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730427" ref_strand="+" ref_description="SGN-E730427 [LA24AD07]">
      <seq>catctagcaactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcangccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaatttgattgtttgatggccctgtaaagtaattgtgacttaatagaatggatttttttttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23560" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23261" g_stop="22341" g_length="921"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="919" r_length="919" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="920" polyA_stop="931"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730427" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>921</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23261" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>CATCTAGCAACTCCCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCANGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAA-TTTGATTGTTTGATGGCCCTGTAAAGTAATTGTGACTTAATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737969" ref_strand="+" ref_description="SGN-E737969 [LC11DE06]">
      <seq>acttaattcttctcttaaaataaacacaaatggcagctgctacaatggctctttcttccccttcatttgctggacaggcagtcaaactctcaccatctgcctcagaaatttctggaaatggaaggatcactatgagaaaggctgttgccaagtccgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaatttcctggtgattacgggtgggataccgctggactttcagcagaccctgaaacttttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgaaggtggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagctgttgagggataccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagacccagaggcatttgctgagctcaaggtaaaggagatcaagaacggtagacttgctatgttctctatgtttggattctttgttcaagctattgtcaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgtaaacaacaatgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaataaattggatttttttttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23523" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23224" g_stop="22341" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="912" r_length="884" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="913" polyA_stop="923"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E737969" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23224" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>AATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAGGGATACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCTATTGTCACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTAAACAACAATGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAAATTGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373348" ref_strand="+" ref_description="SGN-E373348 [TUS-31-J3](-)">
      <seq>ggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23337" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23037" g_stop="22341" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="708"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E373348" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23037" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373405" ref_strand="+" ref_description="SGN-E373405 [TUS-31-D10](-)">
      <seq>gtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcattttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactttaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23332" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23032" g_stop="22341" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="693" polyA_stop="707"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E373405" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23032" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATTTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTTTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733259" ref_strand="+" ref_description="SGN-E733259 [LB04BF03]">
      <seq>cgtgtactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23281" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22981" g_stop="22341" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="661"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733259" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22981" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>CG-TGTACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374001" ref_strand="+" ref_description="SGN-E374001 [TUS-33-A17](-)">
      <seq>ggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgcttttggatgtgttttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagattttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacaaagcattttggccatttgggcttgccaagttgttttgatgggagccgttgaaggttaccgtattggtggtggaccttttggtgaggttgtcgaccccctttaccccggtggcagctttgacccattaggccttgttgaagaccccgaggcatttgttgaggtcaaggtaaaggagattaagaacggcagacttgctatgttttttatgtttggattttttgttcaggccattgttaccggaaagggtccattggagaaccttgctgacccccttgcagaccccgttaacaacaacgcttgggctttcgccccaaactttgtccccggaaaatgaaaatcataaaatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23277" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22977" g_stop="22341" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="671"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E374001" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22977" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTTTTGGATGTGTTTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATTTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATTTTGGCCATTTGGGCTTGCCAAGTTGTTTTGATGGGAGCCGTTGAAGGTTACCGTATTGGTGGTGGACCTTTTGGTGAGGTTGTCGACCCCCTTTACCCCGGTGGCAGCTTTGACCCATTAGGCCTTGTTGAAGACCCCGAGGCATTTGTTGAGGTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTTTTTATGTTTGGATTTTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCCCCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCCCAAACTTTGTCCCCGGAAAATGAAAATCATAAAATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E199969" ref_strand="-" ref_description="SGN-E199969 [cLEB-9-E11]">
      <seq>gctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggttgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaactcgagacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23211" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22911" g_stop="22341" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="572" polyA_stop="587"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E199969" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E199969" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22911" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGTTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203082" ref_strand="+" ref_description="SGN-E203082 [cLEB-3-F15](-)">
      <seq>acggtgtcaagttcggtgaggctgtgtggttcaaggccgaatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23162" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22862" g_stop="22341" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="536"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E203082" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22862" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>ACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGAATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236919" ref_strand="+" ref_description="SGN-E236919 [cLEL-7-E24](-)">
      <seq>ggtccatgcacagaagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23071" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22771" g_stop="22341" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="448"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E236919" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22771" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCATGCACAG-AGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GGTCCATGCACAGAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237106" ref_strand="+" ref_description="SGN-E237106 [cLEL-7-E12](-)">
      <seq>ccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23068" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22768" g_stop="22341" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="444"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E237106" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22768" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>CCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219896" ref_strand="+" ref_description="SGN-E219896 [cLEL-24-I20](-)">
      <seq>agcatcttggccatctgggcttgccaagttgtcttgatggaagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23058" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22758" g_stop="22341" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="436"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E219896" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22758" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>AGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGAAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232176" ref_strand="+" ref_description="SGN-E232176 [cLEL-5-J20](-)">
      <seq>gccatctgggcttgccaagttgtcttgatgggagccgttaaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23049" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22749" g_stop="22341" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="426"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E232176" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22749" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTAAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229318" ref_strand="+" ref_description="SGN-E229318 [cLEL-4-B18](-)">
      <seq>atctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacaccacttctacccggtggcagcttcgaacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23046" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22746" g_stop="22341" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="431"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E229318" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22746" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGAC-CCAC-TCTACCCCGGTGGCAGCTTCG-ACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>ATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACACCACTTCTA-CCCGGTGGCAGCTTCGAACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234967" ref_strand="+" ref_description="SGN-E234967 [cLEL-6-P23](-)">
      <seq>gccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23036" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22736" g_stop="22341" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="414"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E234967" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22736" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234871" ref_strand="+" ref_description="SGN-E234871 [cLEL-6-P23](-)">
      <seq>caagttgtcttgatggagccgttgaaggttaccgtattctggtggacctcttggtgaggttgtcgacccacttctacccggggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacctgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23034" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22734" g_stop="22341" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="409"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E234871" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22734" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>CAAGTTGTCTTGAT-GGAGCCGTTGAAGGTTACCGTATT-CTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTTCTACCCGG-GGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACCTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218328" ref_strand="+" ref_description="SGN-E218328 [cLEL-23-P19](-)">
      <seq>aggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccccaggcatttgctgagctcaaggtaaaggagattaagaacggcagacctgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggattttttttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23008" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22708" g_stop="22341" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="381"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E218328" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22708" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>AGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCCAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACCTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGA-TTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219848" ref_strand="+" ref_description="SGN-E219848 [cLEL-24-I20](-)">
      <seq>ggttaccgtattgctggtggacctcttggtgaggttgtcgacccaactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacctgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23007" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22707" g_stop="22341" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="369" polyA_stop="386"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E219848" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22707" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCC-ACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCAACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACCTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235072" ref_strand="+" ref_description="SGN-E235072 [cLEL-6-B8](-)">
      <seq>tcttggtgaggttgtcgaacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacgccagacttgctatgttctctatgttcggattcattggccaggccattggtaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttagcaacagcgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22984" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22684" g_stop="22341" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="360"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E235072" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22684" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGTGAGGTTGTCG-ACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>TCTTGGTGAGGTTGTCGAACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGCCAGACTTGCTATGTTCTCTATGTTCGGATTCATTGGCCAGGCCATTGGTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAGCAACAGCGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234482" ref_strand="+" ref_description="SGN-E234482 [cLEL-8-O15](-)">
      <seq>ggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22975" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22675" g_stop="22341" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="351"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E234482" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22675" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233903" ref_strand="+" ref_description="SGN-E233903 [cLEL-8-O15](-)">
      <seq>aattcggcacaaggttgtcgacccactctacaccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaagaagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22976" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22674" g_stop="22341" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="347" r_length="334" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="363"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E233903" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22674" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GTTGTCGACCCACTCTACACCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGAAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233987" ref_strand="+" ref_description="SGN-E233987 [cLEL-8-O18](-)">
      <seq>gtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatatcttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22971" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22671" g_stop="22341" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="347"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E233987" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22671" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATCTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230720" ref_strand="+" ref_description="SGN-E230720 [cLEL-35-P1](-)">
      <seq>gacccactctaccccggtggcagcttcgacccattaggccttgttaaagaccccaaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcaatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggattttttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22968" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22668" g_stop="22341" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="356"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E230720" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22668" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGTTAAAGACCCCAAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCAATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215820" ref_strand="+" ref_description="SGN-E215820 [cLEL-15-I10](-)">
      <seq>cactctacaacggtggcagcttcgacccattaggccttgctgaagaccccaaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgctcccttcatagaatggatttttttttcaaaaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22964" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22664" g_stop="22341" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="339"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E215820" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22664" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTG-TGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>CACTCTACAACGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCAAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGCTCCCTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232676" ref_strand="+" ref_description="SGN-E232676 [cLEL-5-J20](-)">
      <seq>ccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctcaatgtacggattctatgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22955" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22655" g_stop="22341" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="316" polyA_stop="332"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E232676" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22655" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>CCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCAATGTACGGATTCTATGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234415" ref_strand="+" ref_description="SGN-E234415 [cLEL-8-O18](-)">
      <seq>tggcagcttcgacccattaggccttgctgaaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacatgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccatgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22951" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22651" g_stop="22341" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="328"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E234415" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22651" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGCTTCGACCCATTAGGCCTTGCTG-AAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>TGGCAGCTTCGACCCATTAGGCCTTGCTGAAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACATGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCATGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222174" ref_strand="+" ref_description="SGN-E222174 [cLEL-16-D24](-)">
      <seq>cgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22942" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22642" g_stop="22341" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="303" polyA_stop="314"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E222174" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22642" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>CGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217828" ref_strand="+" ref_description="SGN-E217828 [cLEL-23-P19](-)">
      <seq>gacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggattttttttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22941" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22641" g_stop="22341" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="301" polyA_stop="314"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E217828" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22641" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>GACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGA-TTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229697" ref_strand="+" ref_description="SGN-E229697 [cLEL-4-B18](-)">
      <seq>cccattaggccttgctgaagaccccaaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22939" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22639" g_stop="22341" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="300" polyA_stop="322"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E229697" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22639" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>CCCATTAGGCCTTGCTGAAGACCCCAAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234592" ref_strand="+" ref_description="SGN-E234592 [cLEL-6-B8](-)">
      <seq>accccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22919" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22619" g_stop="22341" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="280" polyA_stop="294"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E234592" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22619" e_stop="22341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAA</genome_strand>
        <mrna_strand>ACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733727" ref_strand="+" ref_description="SGN-E733727 [LB10DB06]">
      <seq>gctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggatttttttttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23324" stop="22042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23024" g_stop="22342" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23024" e_stop="22342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAA</genome_strand>
        <mrna_strand>GCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222510" ref_strand="+" ref_description="SGN-E222510 [cLEL-16-D22](-)">
      <seq>ggtccatgcacagagcatcttgccatctgggcttgccaagttgtcttgatgggagccgttaaggttaccgtattgcggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatgcatatttgtttggataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23071" stop="22040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22771" g_stop="22345" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="446"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E222510" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22771" e_stop="22345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTT</genome_strand>
        <mrna_strand>GGTCCATGCACAGAGCATCTT-GCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTT-AAGGTTACCGTATTGC-GGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGCATATTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225783" ref_strand="+" ref_description="SGN-E225783 [cLEL-17-N14](-)">
      <seq>ggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaatggatttttttttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23071" stop="22045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22771" g_stop="22345" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="448"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E225783" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22771" e_stop="22345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTT</genome_strand>
        <mrna_strand>GGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGAATGGATTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740331" ref_strand="+" ref_description="SGN-E740331 [LC21AA03]">
      <seq>gctatctccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaaatgatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttaatagaatggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23555" stop="22051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23255" g_stop="22351" g_length="905"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="906" r_length="906" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E740331" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23255" e_stop="22351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAA-CTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTT</genome_strand>
        <mrna_strand>GCTATCTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAAATGATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239222" ref_strand="+" ref_description="SGN-E239222 [cLEL-9-F19](-)">
      <seq>ggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23071" stop="22058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22771" g_stop="22359" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="430"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E239222" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22771" e_stop="22359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGA</genome_strand>
        <mrna_strand>GGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239142" ref_strand="+" ref_description="SGN-E239142 [cLEL-9-F19](-)">
      <seq>gccatctgggcttgccaagttgtcttatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaacccggtggcagcttcgacccatataggccttgctgaagaccccgcaggcatttgctgagctcaaggtaaaggagattaagaacggcagacctgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23049" stop="22058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22749" g_stop="22359" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="409"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E239142" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22749" e_stop="22359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCAT-TAGGCCTTGCTGAAGACCCCG-AGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGA</genome_strand>
        <mrna_strand>GCCATCTGGGCTTGCCAAGTTGTCTT-ATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTAACCCGGTGGCAGCTTCGACCCATATAGGCCTTGCTGAAGACCCCGCAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACCTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216365" ref_strand="+" ref_description="SGN-E216365 [cLEL-13-I6](-)">
      <seq>accccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgacttcatagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22958" stop="22058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22658" g_stop="22359" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="301" polyA_stop="317"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E216365" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22658" e_stop="22359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGA</genome_strand>
        <mrna_strand>ACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTCATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433621" ref_strand="+" ref_description="SGN-E433621 [STM-58-B24]">
      <seq>tttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagctttgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattcttcgttcaggcaattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatataatttttgaattttgattgttcgatggccctgtaaagtagttgtgacttacttgataataaaatggtcttttttccacattcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23319" stop="22045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23020" g_stop="22364" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E433621" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23020" e_stop="22364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTA</genome_strand>
        <mrna_strand>TTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCAATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATAATTTTTGAATTTTGATTGTTCGATGGCCCTGTAAAGTAGTTGTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613966" ref_strand="+" ref_description="SGN-E613966 [63747]">
      <seq>ttcaaggccggatcccagatcttcagtgagggaggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgaaggttatcgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattcttcgttcaggccattgttaccggaaagggtccattagagaaccttgcagatcaccttgcagaccccgttaacaacaatgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatataatttttgaattttgattgtttgatggccctgtaaagtagttgtgacttacttgataatagaatggttcttttttccatattccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23133" stop="22045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22833" g_stop="22364" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E613966" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22833" e_stop="22364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTA</genome_strand>
        <mrna_strand>TTCAAGGCCGGATCCCAGATCTTCAGTGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTATCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTTACCGGAAAGGGTCCATTAGAGAACCTTGCAGATCACCTTGCAGACCCCGTTAACAACAATGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATAATTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726199" ref_strand="+" ref_description="SGN-E726199 [LA11AE03]">
      <seq>caactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtagttgtgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23554" stop="22066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23254" g_stop="22366" g_length="889"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="888" r_length="888" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726199" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23254" e_stop="22366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACT</genome_strand>
        <mrna_strand>CAACTCCCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734525" ref_strand="+" ref_description="SGN-E734525 [LB12DF02]">
      <seq>cttttacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaagtaattgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23573" stop="22067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23273" g_stop="22367" g_length="907"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="907" r_length="907" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734525" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23273" e_stop="22367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGAC</genome_strand>
        <mrna_strand>CTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAATTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575440" ref_strand="+" ref_description="SGN-E575440 [35065]">
      <seq>gaaaaaagaaccattctattatcaagtaagtcacaactactttacagggccatcgaacaatcaaaattaaaaaattatattatgatattcattttccggggacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaatggcctgaacgaagaatccaaacatagagaacatagcaagtctgccgttcttaatctcctttactttgagctcagcaaatgcctctgggtcttcagcaaggcctaatgggtcaaagctgccaccagggtagagtgggtcgacaacctcaccaagaggtccaccagcaatacggtaaccttcaacggctcccatcaagacaacttggcaagcccagatggccaagatgctctgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccctcgctgaagatctgggatccggccttgaaccacacagcctcaccgaacttgacaccattacgggccaatagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcgagttcacggttcttggcaaaggtttcagggtctgctgaaagtccagcgggtatcccaaccgtaagtcaccagcgcaaatttcaccggtcaagtaagcttggggactcaccagagaatgcgcccaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22045" stop="23355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22368" g_stop="23055" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="724" r_length="694" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E575440" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22368" e_stop="23055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCTAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCG-GTATCCCAGCCGT-AGTCACCAG-G-GAA-TTCACCAGTCAAGT-AGCTTGGGGACTCACCAGAGAATGGGCCCAAGTA</genome_strand>
        <mrna_strand>TCACAACTACTTTACAGGGCCATCGAACAATCAAAATTAAAAAATTATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACGAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACTTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCAAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAAAGTCCAGCGGGTATCCCAACCGTAAGTCACCAGCGCAAATTTCACCGGTCAAGTAAGCTTGGGGACTCACCAGAGAATGCGCCCAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414811" ref_strand="+" ref_description="SGN-E414811 [STM-20-O7]">
      <seq>caactactttacagggccatcgaacaatcaaaattcaaaatttttattatgatattcattttccggggacaaagtttgtggcgaaagcccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaattgcctgaacgaagaatccaaacatagagaacatagcaagtctgccgttcttaatctcctttaccttgagctcagcaaatgcctccgggtcttcagcaaggcctaatgggtcaaagctgccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22071" stop="22953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22371" g_stop="22653" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E414811" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22371" e_stop="22653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACC</genome_strand>
        <mrna_strand>CAACTACTTTACAGGGCCATCGAACAATCAAAATTCAAAATTTTTATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATTGCCTGAACGAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCAAAGCTGCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734338" ref_strand="+" ref_description="SGN-E734338 [LB12BF06]">
      <seq>ctagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgcacaaactttgtcccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23558" stop="22078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23258" g_stop="22378" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="879" r_length="879" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23258" e_stop="22378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAA</genome_strand>
        <mrna_strand>CTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCG-CACAAACTTTGT-CCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700013" ref_strand="+" ref_description="SGN-E700013 [FA11DD12]">
      <seq>cctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcggccacaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23548" stop="22078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23248" g_stop="22378" g_length="871"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="870" r_length="870" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E700013" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23248" e_stop="22378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAA</genome_strand>
        <mrna_strand>CCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGGCCACAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347976" ref_strand="-" ref_description="SGN-E347976 [cTOF-31-H18]">
      <seq>ggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggtcaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgtaaaaaaaaaaaaaaaaaactcaagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23337" stop="22078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23037" g_stop="22378" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="676"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347976" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347976" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23037" e_stop="22378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAA</genome_strand>
        <mrna_strand>GGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTCACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286878" ref_strand="+" ref_description="SGN-E286878 [cLES-14-F24]">
      <seq>ttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgatggccctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23319" stop="22081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23019" g_stop="22381" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E286878" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23019" e_stop="22381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGT</genome_strand>
        <mrna_strand>TTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727677" ref_strand="+" ref_description="SGN-E727677 [LA15BF08]">
      <seq>cttttacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23573" stop="22089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23273" g_stop="22389" g_length="885"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="885" r_length="885" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23273" e_stop="22389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGAT</genome_strand>
        <mrna_strand>CTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727456" ref_strand="+" ref_description="SGN-E727456 [LA14DA02]">
      <seq>cgtttcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacacaacgcttgggctttcgccacaaactttgtccccgaaaatgaatatcataatatattttttgaattttgattgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23567" stop="22089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23267" g_stop="22389" g_length="879"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727456" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23267" e_stop="22389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGAT</genome_strand>
        <mrna_strand>CGTTTCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAAC-ACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCC-GAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731824" ref_strand="+" ref_description="SGN-E731824 [LA28BB09]">
      <seq>atcaaactagcaactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtcccccggaaaatgaatatcataatatatttttttgaattttgattgtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23264" g_stop="22389" g_length="876"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731824" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23264" e_stop="22389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGT-CCCCGGAAAATGAATATCATAATATA-TTTTTTGAATTTTGATTGTTTGAT</genome_strand>
        <mrna_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCCGGAAAATGAATATCATAATATATTTTTTTGAATTTTGATTGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235086" ref_strand="+" ref_description="SGN-E235086 [cLEL-6-D20](-)">
      <seq>aagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacctgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaattttgattgtttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23077" stop="22090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22777" g_stop="22391" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="416"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E235086" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22777" e_stop="22391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTG</genome_strand>
        <mrna_strand>AAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACCTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727609" ref_strand="+" ref_description="SGN-E727609 [LA15AG12]">
      <seq>cacggaccatactagcaactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaatttttgattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23568" stop="22093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23269" g_stop="22393" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="877" r_length="877" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727609" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23269" e_stop="22393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAA-TTTTGATTGTT</genome_strand>
        <mrna_strand>CACGGACCATACTAGCAACTCCCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTTGATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734712" ref_strand="+" ref_description="SGN-E734712 [LB13BF01]">
      <seq>gccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataataatattttttgaaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23397" stop="22104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23097" g_stop="22397" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734712" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23097" e_stop="22397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAAT-ATATTTTTTGAATTTTGAT</genome_strand>
        <mrna_strand>GCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATAATATTTTTTGAAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727036" ref_strand="+" ref_description="SGN-E727036 [LA13CB11]">
      <seq>tatatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcaaaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaatgaatatcataatatattttttgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23569" stop="22101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23269" g_stop="22401" g_length="869"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="868" r_length="868" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727036" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23269" e_stop="22401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTT</genome_strand>
        <mrna_strand>TATATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAAACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGG-AAATGAATATCATAATATATTTTTTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734651" ref_strand="+" ref_description="SGN-E734651 [LB13AH11]">
      <seq>atcaaactagcaactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23264" g_stop="22401" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="863" r_length="863" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E734651" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23264" e_stop="22401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTT</genome_strand>
        <mrna_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700722" ref_strand="+" ref_description="SGN-E700722 [FA13DH09]">
      <seq>cacactagcaactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgccaaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccccgaaatgaatatcataatatattttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22405" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E700722" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGA</genome_strand>
        <mrna_strand>CACACTAGCAACTCCCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCCAACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCCCGAAATGAATATCATAATATATTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340345" ref_strand="+" ref_description="SGN-E340345 [cTOF-2-B17]">
      <seq>aactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23553" stop="22105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23253" g_stop="22620" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22619" i_stop="22482" i_length="138">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22481" g_stop="22405" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="711" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340345" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23253" e_stop="22620"/>
          <exon e_start="22481" e_stop="22405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGA</genome_strand>
        <mrna_strand>AACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAG..........................................................................................................................................ACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282066" ref_strand="+" ref_description="SGN-E282066 [cLES-2-H18]">
      <seq>ttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23195" stop="22106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22895" g_stop="22406" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E282066" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22895" e_stop="22406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTG</genome_strand>
        <mrna_strand>TTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727164" ref_strand="+" ref_description="SGN-E727164 [LA13DF09]">
      <seq>caatctagcaactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcangccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacacaacgcttgggctttcgccacaaactttgtccccggaaaatgaatatcataatatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22408" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="853" r_length="853" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727164" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTT</genome_strand>
        <mrna_strand>CAATCTAGCAACTCCCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCANGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAAC-ACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732733" ref_strand="+" ref_description="SGN-E732733 [LB02DH10]">
      <seq>ctctttttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttgggctttcgccacaaactttgtcccccggaaatgaatatcataatatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23547" stop="22108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23247" g_stop="22408" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E732733" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23247" e_stop="22408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTT</genome_strand>
        <mrna_strand>CTCTTTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCCGGAAATGAATATCATAATATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727843" ref_strand="+" ref_description="SGN-E727843 [LA15DF05]">
      <seq>acgcttttacatatcaaactagcaactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaacaacaacgcttggggctttcgccacaaactttgtcccccggaaaatgaatatcataatatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23573" stop="22109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23276" g_stop="22409" g_length="868"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="869" r_length="869" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727843" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23276" e_stop="22409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTT-GGGCTTTCGCCACAAACTTTGT-CCCCGGAAAATGAATATCATAATATATTTT</genome_strand>
        <mrna_strand>ACGCTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTT-AAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGGCTTTCGCCACAAACTTTGTCCCCCGGAAAATGAATATCATAATATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624501" ref_strand="+" ref_description="SGN-E624501 [GI|14275857]">
      <seq>gccgcccggggacaaagtttgtggcgaaagccaagcgttgttgttaacggggtctgcaaggtggtcagcaaggttctccaatggaccctttccggtaacaatggcctgaacgaagaatccaaacatagagaacatagcaagtctgccgttcttaatctcctttactttgagctcagcaaatgcctctgggtcttcagcaaggcctaatgggtcaaagctgccaccagggtagagtgggtcgacaacctcaccaagaggtcaccagcaatacggtaaccttcaacggctccatcaatgacaacttggcaagcccagatggccaagatgctctgtgcatggaccaagcttgggttgcccaagtagtcaagtccaccctcgctgaagatgtgggatccggccttgaaccacacagcctcaccgaacttgacaccattacgggccaatagctcagggaagacacatcaagagcaccaagcatagccatctgcagtggatcacctcgagttcacggttcttggcaaaggtttcagggtctgctgaaagtccagcggtatcccacccgtagtcaccagggaattcaccggtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcagggcataccatgggctgctagatggggcagacttggcgacagctttctcatagtgatccttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22133" stop="23434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22428" g_stop="23134" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E624501" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22428" e_stop="23134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAA-GACAACTTGGCAAGCCCAGATGGCTAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGACTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATGGTGATCCTTCCA</genome_strand>
        <mrna_strand>GCCGCCCGGGGACAAAGTTTGTGGCGAAAGCC-AAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACGAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACTTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCAAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGT-CACCAGCAATACGGTAACCTTCAACGGCT-CCATCAATGACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATGTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAATAGCTCAGGGAAGACACAT-CAAGAGCACCAAGCATAG-CCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGG-CATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAG-CTTTCTCATAGTGATCCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698131" ref_strand="+" ref_description="SGN-E698131 [FA05BD10]">
      <seq>ctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggaaaaccttgctgaccaccttgcaaacccccgttaacaacaacgcttgggctttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23547" stop="22153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23247" g_stop="22452" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E698131" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23247" e_stop="22452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGA-CCCCGTTAACAACAACGCTTGGGCTTTCG</genome_strand>
        <mrna_strand>CTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAAACCCCCGTTAACAACAACGCTTGGGCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571994" ref_strand="+" ref_description="SGN-E571994 [31078]">
      <seq>ctttcctctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagctttgacccattaggccttgctgaagacccagaggcatttgctgagctcaaagtaaaggagattaagaacggcagacttgctatgttctctatgtttggattcttcgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcaagacccgttaacaacaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23542" stop="22163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23243" g_stop="22463" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E571994" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23243" e_stop="22463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGC</genome_strand>
        <mrna_strand>CTTTCCTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAAGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAAGACCCGTTAACAACAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346169" ref_strand="+" ref_description="SGN-E346169 [cTOF-34-M13]">
      <seq>tctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgctgaccaccttgcagaccccgttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23400" stop="22170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23100" g_stop="22470" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346169" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23100" e_stop="22470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACA</genome_strand>
        <mrna_strand>TCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391116" ref_strand="+" ref_description="SGN-E391116 [TUS-48-N16]">
      <seq>cttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttacccgaaagggtccattgcagaaccttgctgaccaccttgcaaaccccgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23320" stop="22173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23020" g_stop="22473" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E391116" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23020" e_stop="22473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTA</genome_strand>
        <mrna_strand>CTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCCGAAAGGGTCCATTGCAGAACCTTGCTGACCACCTTGCAAACCCCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733896" ref_strand="+" ref_description="SGN-E733896 [LB11BA01]">
      <seq>cgcaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcactctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcacggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggaaaaacttgctgaccaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23560" stop="22184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22484" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E733896" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGC</genome_strand>
        <mrna_strand>CGCAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACTCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCACGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAAAAACTTGCTGACCACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340385" ref_strand="+" ref_description="SGN-E340385 [cTOF-2-F8]">
      <seq>tcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgagggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaagccattgttaccggaaagggtccattggagaaccttgctgaccaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23546" stop="22184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23246" g_stop="22484" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340385" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23246" e_stop="22484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGA-GGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGC</genome_strand>
        <mrna_strand>TCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727123" ref_strand="+" ref_description="SGN-E727123 [LA13DC02]">
      <seq>atcaactccctcattttcctctcattaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgataaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactccaggtgatccactgcacatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccatatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaacgttaccgtattgctggtggacctcttggtgaggatgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgatctcaaggtaaaggagattaagaacggcagacttgctatgctctctatgttcggattctttgatcagggcattgataccggaaagggtccattggaaaaccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23556" stop="22193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23256" g_stop="22493" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727123" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23256" e_stop="22493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGA</genome_strand>
        <mrna_strand>ATCAACTCCCTCATTTTCCTCTCATTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGATAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCCAGGTGATCCACTGCACATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCATATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAACGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGATGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGATCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGCTCTCTATGTTCGGATTCTTTGATCAGGGCATTGATACCGGAAAGGGTCCATTGGAAAACCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730972" ref_strand="+" ref_description="SGN-E730972 [LA25DB02]">
      <seq>cccataagggaactagcaactccctcattttcctctctttaaaatcatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaagccattgttaccggaaagggtccattggagaaccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23560" stop="22194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23269" g_stop="22494" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="776" r_length="776" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E730972" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23269" e_stop="22494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAT-ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTG</genome_strand>
        <mrna_strand>CCCATAAGGGAACTAGCAACTCCCTCATTTTCCTCTCTTTAA-AATCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348311" ref_strand="+" ref_description="SGN-E348311 [cTOF-27-N21]">
      <seq>gctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggtccattggagaaccttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23517" stop="22195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23217" g_stop="22495" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E348311" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23217" e_stop="22495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCT</genome_strand>
        <mrna_strand>GCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725235" ref_strand="+" ref_description="SGN-E725235 [FC26CA01]">
      <seq>atcggccgaattgatcacaactaactctcttaaaagaactagcaactccctcattttcctctctttaacaccaaggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcaaaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcaaaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttaccggaaagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23586" stop="22213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23257" g_stop="22513" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="783" r_length="744" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725235" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23257" e_stop="22513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGT</genome_strand>
        <mrna_strand>TAGCAACTCCCTCATTTTCCTCTCTTT-AACACCAAGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAAAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAAACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727828" ref_strand="+" ref_description="SGN-E727828 [LA15DE01]">
      <seq>tttttacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctccaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttggttcggccattgttaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23572" stop="22220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23273" g_stop="22520" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E727828" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23273" e_stop="22520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGG</genome_strand>
        <mrna_strand>TTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCCAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGGTTCGGCCATTGTTACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737510" ref_strand="+" ref_description="SGN-E737510 [LC10AF05]">
      <seq>gctgcaggaattcggcacgaggatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttgttcaggccattgttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23264" g_stop="22522" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="765" r_length="743" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E737510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23264" e_stop="22522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACC</genome_strand>
        <mrna_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690401" ref_strand="+" ref_description="SGN-E690401 [LH_Ea03G15]">
      <seq>tcaactccttcattttcctcgctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactcgcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggtccattctctggtgagtccccaagctacttgaccggtgaattcccaggtgactacggctgggataccgctggactttcagctgaccctgaaacctttgccaagaaccgtgaacttgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgattacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccaggtggaagcttcgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattcttcgttcaggccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23554" stop="22228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23255" g_stop="22528" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E690401" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23255" e_stop="22528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATT</genome_strand>
        <mrna_strand>TCAACTCCTTCATTTTCCTCGCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCGCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCAGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407535" ref_strand="+" ref_description="SGN-E407535 [PPI-7-L19]">
      <seq>ctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggggaaggttgtcgacccactctaccctggtggcagctttgacccattangccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattcttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23502" stop="22238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23202" g_stop="22538" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E407535" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23202" e_stop="22538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTG-AGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGT</genome_strand>
        <mrna_strand>CTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGGGAAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTANGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699890" ref_strand="+" ref_description="SGN-E699890 [FA11CA05]">
      <seq>ctctttacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcaacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaaaaacggcagacttgctatgttctctatgttcggattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23573" stop="22239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23273" g_stop="22539" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E699890" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23273" e_stop="22539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CT-TTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTG</genome_strand>
        <mrna_strand>CTCTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCAACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAAAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478613" ref_strand="+" ref_description="SGN-E478613 [cSTD-6-M7]">
      <seq>catcaaactagcaaccccctcactttactctctttaaaaacccatgggcagctgctacaaatgggctctttcttccccttcttttgctggacaggcagtgaaacctcttcaccccttctgcctcagaaatctctggaaatggaaggaatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaagttgtcgacccactctaccctggtggcagctttgacccattangccttgctgaagaacccggagcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23265" g_stop="22539" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E478613" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23265" e_stop="22539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAA-CCAT-GGCAGCTGCTAC-AAT-GGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAA-CTCT-CACC-CT-CTGCCTCAGAAATCTCTGGAAATGGAAGG-ATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTG</genome_strand>
        <mrna_strand>CATCAAACTAGCAACCCCCTCACTTTACTCTCTTTAAAAACCCATGGGCAGCTGCTACAAATGGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACCTCTTCACCCCTTCTGCCTCAGAAATCTCTGGAAATGGAAGGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTANGCCTTGCTGAAGAACCCGGAGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340206" ref_strand="+" ref_description="SGN-E340206 [cTOF-2-O2]">
      <seq>tcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23563" stop="22239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22539" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340206" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTG</genome_strand>
        <mrna_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339056" ref_strand="+" ref_description="SGN-E339056 [cTOF-6-P1]">
      <seq>tccctcattttcctctctttaaaaacatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23550" stop="22239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23250" g_stop="22539" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E339056" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23250" e_stop="22539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTG-AGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTG</genome_strand>
        <mrna_strand>TCCCTCATTTTCCTCTCTTTAAAAA-CATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710871" ref_strand="+" ref_description="SGN-E710871 [FA57AG04]">
      <seq>ctcattttcctctctttaaaaccatggcagcttctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23547" stop="22240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23247" g_stop="22540" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E710871" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23247" e_stop="22540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTT</genome_strand>
        <mrna_strand>CTCATTTTCCTCTCTTT-AAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343521" ref_strand="+" ref_description="SGN-E343521 [cTOF-19-G18]">
      <seq>gctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgagggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23517" stop="22240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23217" g_stop="22540" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343521" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23217" e_stop="22540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGA-GGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTT</genome_strand>
        <mrna_strand>GCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477397" ref_strand="+" ref_description="SGN-E477397 [cSTB-48-G17]">
      <seq>ctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcacccactgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgagggaggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgttgaaggttatcgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgtttggattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23513" stop="22241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23213" g_stop="22540" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E477397" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23213" e_stop="22540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTT</genome_strand>
        <mrna_strand>CTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCACTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTATCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297490" ref_strand="+" ref_description="SGN-E297490 [cLET-28-C4]">
      <seq>gatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctatgttcggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23428" stop="22245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23128" g_stop="22545" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E297490" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23128" e_stop="22545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGAT</genome_strand>
        <mrna_strand>GATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728899" ref_strand="+" ref_description="SGN-E728899 [LA19BC08]">
      <seq>caaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaagggaaaggagattaagaacggcagacttgctatgttctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22553" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728899" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTAT</genome_strand>
        <mrna_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGGAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404731" ref_strand="+" ref_description="SGN-E404731 [PPC-15-G11]">
      <seq>tggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaagttaccgtattgctggtggaccctctggtgaggttgtcgacccactctaccctggtggcagctttgacccattaagccttgctgaagacccggaggcatttgctgagctncaggtaaaggagattaagaacggcagacttgctatgttctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23374" stop="22253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23074" g_stop="22553" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E404731" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23074" e_stop="22553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTAT</genome_strand>
        <mrna_strand>TGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAAGTTACCGTATTGCTGGTGGACCCTCTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTAAGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTNCAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280389" ref_strand="+" ref_description="SGN-E280389 [cLER-1-D17]">
      <seq>gaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgttctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23259" stop="22253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22959" g_stop="22553" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E280389" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22959" e_stop="22553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTAT</genome_strand>
        <mrna_strand>GAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343656" ref_strand="+" ref_description="SGN-E343656 [cTOF-20-L16]">
      <seq>ctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccccgagcatttgctgagctcaaggtaaaggagataagaacggcagacttgctatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23516" stop="22258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23216" g_stop="22558" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343656" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23216" e_stop="22558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTC</genome_strand>
        <mrna_strand>CTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCCGAGCATTTGCTGAGCTCAAGGTAAAGGAGA-TAAGAACGGCAGACTTGCTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347131" ref_strand="+" ref_description="SGN-E347131 [cTOF-25-E19]">
      <seq>caactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgagggttgtcgacccactctacccccggtggcagcttcgacccattaggccttgctgaagaaccccgagcatttgctgagctcaggtaaaggagattaagacggcagacttgctatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23554" stop="22260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23254" g_stop="22560" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347131" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23254" e_stop="22560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGA-GGTTGTCGACCCACTCTA-CCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGT</genome_strand>
        <mrna_strand>CAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGGTTGTCGACCCACTCTACCCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGAACCCCGAGCATTTGCTGAGCTC-AGGTAAAGGAGATTAAG-ACGGCAGACTTGCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612955" ref_strand="+" ref_description="SGN-E612955 [62723]">
      <seq>ctcactttactctctttataaaccatggcagctggctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagctttgacccattaggccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctatgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23547" stop="22258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23247" g_stop="22561" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E612955" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23247" e_stop="22561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCCTCTCTTTAAAAACCATGGCAGCT-GCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATG</genome_strand>
        <mrna_strand>CTCACTTTACTCTCTTTATAAACCATGGCAGCTGGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461490" ref_strand="+" ref_description="SGN-E461490 [cPRO-8-L5]">
      <seq>atcaaactagcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagctttgacccattangccttgctgaagacccggaggcatttgctgagctcaaggtaaaggagattaagaacggcagacttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23264" g_stop="22562" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E461490" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23264" e_stop="22562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTAT</genome_strand>
        <mrna_strand>ATCAAACTAGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTANGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345559" ref_strand="+" ref_description="SGN-E345559 [cTOF-18-D22]">
      <seq>tcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggagaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgagggntgtcgacccactctaccccgggggcagcttcgacccattangccttgctgaagacccccgagcatttgctgagctcaaggtaaggagattaagaacggcagacttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23563" stop="22262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22562" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345559" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGA-GGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTAT</genome_strand>
        <mrna_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGAGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGGNTGTCGACCCACTCTACCCCGGGGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCCCGAGCATTTGCTGAGCTCAAGGT-AAGGAGATTAAGAACGGCAGACTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373406" ref_strand="+" ref_description="SGN-E373406 [TUS-31-D10]">
      <seq>ctccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23551" stop="22286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23251" g_stop="22586" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E373406" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23251" e_stop="22586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGA</genome_strand>
        <mrna_strand>CTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345828" ref_strand="+" ref_description="SGN-E345828 [cTOF-18-J2]">
      <seq>tcattttcctctctttaaaaacatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgagggtgtcgacccactctaccccggtggcagcttcgacccattangccttgctgaagaccccgaggcatttgctgagctcaagtaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23546" stop="22287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23246" g_stop="22587" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345828" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23246" e_stop="22587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGG</genome_strand>
        <mrna_strand>TCATTTTCCTCTCTTTAAAAA-CATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGGTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAA-GTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374002" ref_strand="+" ref_description="SGN-E374002 [TUS-33-A17]">
      <seq>ttacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaaggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23570" stop="22290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23270" g_stop="22590" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E374002" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23270" e_stop="22590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAA</genome_strand>
        <mrna_strand>TTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346345" ref_strand="+" ref_description="SGN-E346345 [cTOF-23-A15]">
      <seq>atcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgagggtgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23264" g_stop="22594" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346345" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23264" e_stop="22594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAG</genome_strand>
        <mrna_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGGTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348754" ref_strand="+" ref_description="SGN-E348754 [cTOF-29-M7]">
      <seq>tcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatttgctgagctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23563" stop="22294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22594" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E348754" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAG</genome_strand>
        <mrna_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613757" ref_strand="+" ref_description="SGN-E613757 [63536]">
      <seq>ctctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgcgggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgaaccactctaacctggtggcagctttgacccattaggccttgctgaagacccagaggcatttgctgagctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23538" stop="22295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23238" g_stop="22594" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E613757" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23238" e_stop="22594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAG</genome_strand>
        <mrna_strand>CTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGCGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGAACCACTCTAACCTGGTGGCAGCTTTGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286927" ref_strand="+" ref_description="SGN-E286927 [cLES-6-E5]">
      <seq>caactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagaccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgggaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggcgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgctgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagaccccgaggcatctgctgagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23554" stop="22295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23254" g_stop="22595" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E286927" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23254" e_stop="22595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAA</genome_strand>
        <mrna_strand>CAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGACCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGGGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGCTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATCTGCTGAGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479107" ref_strand="+" ref_description="SGN-E479107 [cSTD-8-J5]">
      <seq>catcaaactagcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagctttgacccattangccttgctgaagacccggaggcatttgctgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23265" g_stop="22597" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E479107" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23265" e_stop="22597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTC</genome_strand>
        <mrna_strand>CATCAAACTAGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTANGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347696" ref_strand="+" ref_description="SGN-E347696 [cTOF-26-G1]">
      <seq>cctcattttcctctctttaaaaacatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattangccttgctgaagaccccgaggcatttgctgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23548" stop="22297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23248" g_stop="22597" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347696" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23248" e_stop="22597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTC</genome_strand>
        <mrna_strand>CCTCATTTTCCTCTCTTTAAAAA-CATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343728" ref_strand="+" ref_description="SGN-E343728 [cTOF-20-D8]">
      <seq>ttttcctctctttaaaaacatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaagttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctgaagacccccgagcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23543" stop="22298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23243" g_stop="22598" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343728" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23243" e_stop="22598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>TTTTCCTCTCTTTAAAAA-CATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAAGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCCGAGCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345779" ref_strand="+" ref_description="SGN-E345779 [cTOF-18-C12]">
      <seq>tctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattangccttgctgaagacccccgagcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23503" stop="22298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23203" g_stop="22598" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E345779" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23203" e_stop="22598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>TCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTANGCCTTGCTGAAGACCCCCGAGCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459557" ref_strand="+" ref_description="SGN-E459557 [cPRO-28-A6]">
      <seq>gtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagctttgacccattaggccttgctgaagacccggagcatttgctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23472" stop="22298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23172" g_stop="22598" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E459557" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23172" e_stop="22598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCT</genome_strand>
        <mrna_strand>GTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTAGGCCTTGCTGAAGACCCGGA-GCATTTGCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572813" ref_strand="+" ref_description="SGN-E572813 [32025]">
      <seq>caaactagcacccctcactttcctctctttaaaaaccatggcagctgctaccaatggctctttcttccccttcttttgctggacaggcagtgaaactctcacccactgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgagggaggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagccgtttgaaggttatcgtattgctggtggacctcttggtgaggttgtcgacccactctacctggtggcagttcgacccattagccttgctgaagaccccgaggcattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22603" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E572813" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTA-CAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCG-TTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCT</genome_strand>
        <mrna_strand>CAAACTAGC-AC-CCCTCACTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACCAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCACTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTTGAAGGTTATCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTA-CCTGGTGGCAG-TTCGACCCATTA-GCCTTGCTGAAGACCCCGAGGCA-TTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573766" ref_strand="+" ref_description="SGN-E573766 [33128]">
      <seq>cccctcactttactctcttaataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagtttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagctttgacccattaggccttgctgaagacccggaggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23549" stop="22308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23250" g_stop="22608" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E573766" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23250" e_stop="22608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAG-TTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCAT</genome_strand>
        <mrna_strand>CCCCTCACTTTACTCTCTTAATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTAGGCCTTGCTGAAGACCCGGAGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612641" ref_strand="+" ref_description="SGN-E612641 [62406]">
      <seq>cttttacatatcaaactagcaaccccctcactttcctctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggctttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccaatctaaccctggtggacagcttttgacccatttagggccttgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23573" stop="22343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23273" g_stop="22621" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E612641" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23273" e_stop="22621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGC-TTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCT-ACCCCGGTGG-CAGC-TTCGACCCA-TTA-GGCCTTGCTGAA</genome_strand>
        <mrna_strand>CTTTTACATATCAAACTAGCAACCCCCTCACTTTCCTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCAATCTAACCCTGGTGGACAGCTTTTGACCCATTTAGGGCCTTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373349" ref_strand="+" ref_description="SGN-E373349 [TUS-31-J3]">
      <seq>ttttttcaaaaaaaaaatccattctatgaagtcacaactaacttttacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcaacccattaggccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23583" stop="22322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23283" g_stop="22622" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="693" r_length="662" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E373349" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23283" e_stop="22622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAACTAACTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGA</genome_strand>
        <mrna_strand>TCACAACTAACTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCAACCCATTAGGCCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340542" ref_strand="+" ref_description="SGN-E340542 [cTOF-1-L8]">
      <seq>tcaaactagcaactccctcattttcctctctttaaaaacatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctacccccgtggcagcttcgacccattaggccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23563" stop="22322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22622" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340542" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGA</genome_strand>
        <mrna_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAA-CATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCCGTGGCAGCTTCGACCCATTAGGCCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481575" ref_strand="+" ref_description="SGN-E481575 [cSTD-18-N7]">
      <seq>ggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtgattcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagctttgacccattatgccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23433" stop="22322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23133" g_stop="22622" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E481575" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23133" e_stop="22622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGA</genome_strand>
        <mrna_strand>GGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGATTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGACCCATTATGCCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340595" ref_strand="+" ref_description="SGN-E340595 [cTOF-1-M3]">
      <seq>tctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23400" stop="22322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23100" g_stop="22622" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23100" e_stop="22622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGA</genome_strand>
        <mrna_strand>TCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346918" ref_strand="+" ref_description="SGN-E346918 [cTOF-32-J1]">
      <seq>tcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgacccattaggccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23563" stop="22323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22623" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E346918" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTG</genome_strand>
        <mrna_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458810" ref_strand="+" ref_description="SGN-E458810 [cPRO-7-O22]">
      <seq>agcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccctggtggcagctttgaccattangccttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23556" stop="22323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23256" g_stop="22623" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E458810" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23256" e_stop="22623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTG</genome_strand>
        <mrna_strand>AGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTTGA-CCATTANGCCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E199957" ref_strand="+" ref_description="SGN-E199957 [cLEB-2-B21]">
      <seq>gcacgagtacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagcttcgaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23512" stop="22336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23220" g_stop="22636" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E199957" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E199957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23220" e_stop="22636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCA</genome_strand>
        <mrna_strand>GCACGAG-TACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326924" ref_strand="+" ref_description="SGN-E326924 [cTOC-18-D7]">
      <seq>tcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggcagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23563" stop="22343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22643" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E326924" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTT</genome_strand>
        <mrna_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728968" ref_strand="+" ref_description="SGN-E728968 [LA19CB12]">
      <seq>tttacatancaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtngacccactctaccccggtggcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23571" stop="22344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23271" g_stop="22644" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E728968" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23271" e_stop="22644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCT</genome_strand>
        <mrna_strand>TTTACATANCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTNGACCCACTCTACCCCGGTGGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729329" ref_strand="+" ref_description="SGN-E729329 [LA20CH10]">
      <seq>atcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactctaccccggtggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23264" g_stop="22647" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23264" e_stop="22647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCA</genome_strand>
        <mrna_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284946" ref_strand="+" ref_description="SGN-E284946 [cLER-19-P12]">
      <seq>ttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23532" stop="22358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23232" g_stop="22658" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284946" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23232" e_stop="22658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTA</genome_strand>
        <mrna_strand>TTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474006" ref_strand="+" ref_description="SGN-E474006 [cSTB-34-M24]">
      <seq>cactttcctctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcctgaatgtgacttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgaggttgtcgacccactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23545" stop="22359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23245" g_stop="22659" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E474006" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23245" e_stop="22659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCT</genome_strand>
        <mrna_strand>CACTTTCCTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCCTGAATGTGACTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731125" ref_strand="+" ref_description="SGN-E731125 [LA26AH06]">
      <seq>caaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttaaggccggacccangacttcagcgaggaggattgactattgggcaccaagcttggccatgcacagagcatctaaccatctgggcttgccagttgtcttgatgggagccgttgaaaggtaccgtattgctggtggacctcttggtgaggttgtcgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22664" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E731125" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCC</genome_strand>
        <mrna_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTT-AAGGCCGGA-CCCANGACTTCAGCGA-GGAGGA-TTGACTA-TTGGGC-A-CCAAGCTTGG-CCATGCACAGAGCATC-TAACCATCTGGGCTTGCC-AGTTGTCTTGATGGGAGCCGTTGAAAGGTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474694" ref_strand="+" ref_description="SGN-E474694 [cSTB-37-M6]">
      <seq>tacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23512" stop="22374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23212" g_stop="22674" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E474694" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23212" e_stop="22674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGG</genome_strand>
        <mrna_strand>TACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281635" ref_strand="+" ref_description="SGN-E281635 [cLER-14-A4]">
      <seq>ctagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23558" stop="22377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23258" g_stop="22677" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E281635" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23258" e_stop="22677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTG</genome_strand>
        <mrna_strand>CTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340278" ref_strand="+" ref_description="SGN-E340278 [cTOF-2-A19]">
      <seq>ctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23516" stop="22379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23216" g_stop="22679" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E340278" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23216" e_stop="22679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGG</genome_strand>
        <mrna_strand>CTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323255" ref_strand="+" ref_description="SGN-E323255 [cTOB-28-F11]">
      <seq>tacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttaagcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23512" stop="22379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23212" g_stop="22679" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E323255" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23212" e_stop="22679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGG</genome_strand>
        <mrna_strand>TACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTAAGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402125" ref_strand="+" ref_description="SGN-E402125 [PPC-6-D13]">
      <seq>cttttacacatcaaactagcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23573" stop="22380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23273" g_stop="22680" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E402125" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23273" e_stop="22680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTG</genome_strand>
        <mrna_strand>CTTTTACACATCAAACTAGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323020" ref_strand="+" ref_description="SGN-E323020 [cTOB-30-J10]">
      <seq>tcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggctttgcaagttgtcttgatgggagccgttgaaagttaccgtattgctggtggacctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23563" stop="22380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22680" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E323020" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTG</genome_strand>
        <mrna_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTTGCAAGTTGTCTTGATGGGAGCCGTTGAAAGTTACCGTATTGCTGGTGGACCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343243" ref_strand="+" ref_description="SGN-E343243 [cTOF-17-E10]">
      <seq>tcattttcctctctttaaaaacatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23546" stop="22380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23246" g_stop="22680" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E343243" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23246" e_stop="22680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTG</genome_strand>
        <mrna_strand>TCATTTTCCTCTCTTTAAAAA-CATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300485" ref_strand="+" ref_description="SGN-E300485 [cLET-45-D20]">
      <seq>ggatcaccatgataaaggctgttgctaagtctgccccatctagcagtccatggtatgggcctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgcgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcatgttccgtgaggctgtgtggctcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgacaagttgtcttgatgggagccgttgaaggttaccgtattgctggtggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23429" stop="22385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23129" g_stop="22685" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E300485" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23129" e_stop="22685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACC</genome_strand>
        <mrna_strand>GGATCACCATGATAAAGGCTGTTGCTAAGTCTGCCCCATCTAGCAGTCCATGGTATGGGCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGCGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCATGTTCCGTGAGGCTGTGTGGCTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGACAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315749" ref_strand="+" ref_description="SGN-E315749 [cTOA-26-I16]">
      <seq>tcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23563" stop="22392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22692" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E315749" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTG</genome_strand>
        <mrna_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456910" ref_strand="+" ref_description="SGN-E456910 [cPRO-1-E13]">
      <seq>tggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagatgtcttgatgggagccgttgaaggttaccgtattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23434" stop="22392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23134" g_stop="22692" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E456910" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23134" e_stop="22692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTG</genome_strand>
        <mrna_strand>TGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGATGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478106" ref_strand="+" ref_description="SGN-E478106 [cSTD-3-M3]">
      <seq>atcaaactagcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaaggttaccgtattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23264" g_stop="22694" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E478106" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23264" e_stop="22694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGC</genome_strand>
        <mrna_strand>ATCAAACTAGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729252" ref_strand="+" ref_description="SGN-E729252 [LA20BH09]">
      <seq>atcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgctaagttgtcttgatgggagccgttgaaggttaccgtattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23264" g_stop="22694" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E729252" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23264" e_stop="22694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGC</genome_strand>
        <mrna_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCTAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467596" ref_strand="+" ref_description="SGN-E467596 [cSTB-1-C12]">
      <seq>ataaaacacaatggcagctgctacaatggctctttcttccccttcttttgctggacaagcagtgaaactctcaccatctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccgttctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactttcagcagaccctgaaacttttgccaagaatcgtgaacttgaggtgatccactgtagatgggctatgcttggtgctcttggatgtgtcttccctgagctcttggcccgtaacggtgtcaagtttggtgaggctgtgtggttcaaggccggatctcagatcttcagtgaaggtggacttgattacttgggtaacccaagcttggtccatgcacagagtatcttggccatctgggcttgccaagttgtgttgatgggagccgttgaaggataccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23531" stop="22398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23233" g_stop="22698" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E467596" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23233" e_stop="22698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTA</genome_strand>
        <mrna_strand>ATAAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTCACCATCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCGTTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAATCGTGAACTTGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAACGGTGTCAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCTCAGATCTTCAGTGAAGGTGGACTTGATTACTTGGGTAACCCAAGCTTGGTCCATGCACAGAGTATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGCCGTTGAAGGATACCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474886" ref_strand="+" ref_description="SGN-E474886 [cSTB-38-E6]">
      <seq>ctacaatggctcttttatactcttcttttgctggacaggcagggaagcggtcactttctgcctcagaaatctccgccaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23513" stop="22408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23213" g_stop="22708" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E474886" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23213" e_stop="22708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAA</genome_strand>
        <mrna_strand>CTACAATGGCTCTTTTATACTCTTCTTTTGCTGGACAGGCAGGGAAGCGGTCACTTTCTGCCTCAGAAATCTCCGCCAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311938" ref_strand="+" ref_description="SGN-E311938 [cTOA-16-G13]">
      <seq>ctagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctctnggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagccgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23558" stop="22409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23258" g_stop="22709" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E311938" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23258" e_stop="22709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGA</genome_strand>
        <mrna_strand>CTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTNGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295171" ref_strand="+" ref_description="SGN-E295171 [cLET-20-J5]">
      <seq>caaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22714" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295171" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCC</genome_strand>
        <mrna_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290506" ref_strand="+" ref_description="SGN-E290506 [cLES-20-K15]">
      <seq>taaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23531" stop="22414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23231" g_stop="22714" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290506" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23231" e_stop="22714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCC</genome_strand>
        <mrna_strand>TAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468180" ref_strand="+" ref_description="SGN-E468180 [cSTB-2-J2]">
      <seq>aaactagcaaccccctcactttcctctctttaaaaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcacccactgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgagggaggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttgccaagttgtgttgatgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23561" stop="22415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23261" g_stop="22715" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E468180" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23261" e_stop="22715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGC</genome_strand>
        <mrna_strand>AAACTAGCAACCCCCTCACTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCACTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTGTTGATGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341912" ref_strand="+" ref_description="SGN-E341912 [cTOF-9-I6]">
      <seq>tacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgggtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttgggccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23569" stop="22416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23269" g_stop="22716" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E341912" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23269" e_stop="22716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</genome_strand>
        <mrna_strand>TACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGGGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGGCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725538" ref_strand="+" ref_description="SGN-E725538 [LA03DH05]">
      <seq>caaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgnngcacccaagctggtccatgcacagagcatctagccatctggcttgccaagtgtctgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22716" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725538" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</genome_strand>
        <mrna_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGNNGCACCCAAGC-TGGTCCATGCACAGAGCATC-TAGCCATCT-GGCTTGCCAAG-TGTC-TGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726032" ref_strand="+" ref_description="SGN-E726032 [LA10AD08]">
      <seq>caaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttagccatctgggcttgccaaagtgtcttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22716" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E726032" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</genome_strand>
        <mrna_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAAGTGTCTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319031" ref_strand="+" ref_description="SGN-E319031 [cTOB-14-D1]">
      <seq>tagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23557" stop="22416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23257" g_stop="22716" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E319031" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23257" e_stop="22716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</genome_strand>
        <mrna_strand>TAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457811" ref_strand="+" ref_description="SGN-E457811 [cPRO-3-F8]">
      <seq>caaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23554" stop="22416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23254" g_stop="22716" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E457811" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23254" e_stop="22716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</genome_strand>
        <mrna_strand>CAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282726" ref_strand="+" ref_description="SGN-E282726 [cLER-15-H4]">
      <seq>cctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23539" stop="22416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23239" g_stop="22716" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E282726" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23239" e_stop="22716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</genome_strand>
        <mrna_strand>CCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281811" ref_strand="+" ref_description="SGN-E281811 [cLER-14-D20]">
      <seq>tcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23490" stop="22416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23190" g_stop="22716" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E281811" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23190" e_stop="22716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</genome_strand>
        <mrna_strand>TCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476814" ref_strand="+" ref_description="SGN-E476814 [cSTB-46-E3]">
      <seq>caaactagcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22717" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E476814" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGA</genome_strand>
        <mrna_strand>CAAACTAGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289050" ref_strand="+" ref_description="SGN-E289050 [cLES-18-C19]">
      <seq>caactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacccttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23554" stop="22417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23254" g_stop="22717" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289050" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23254" e_stop="22717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGA</genome_strand>
        <mrna_strand>CAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCCTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463521" ref_strand="+" ref_description="SGN-E463521 [cPRO-14-N8]">
      <seq>cctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttccgtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23548" stop="22417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23248" g_stop="22717" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E463521" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23248" e_stop="22717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGA</genome_strand>
        <mrna_strand>CCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCCGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463647" ref_strand="+" ref_description="SGN-E463647 [cPRO-15-G12]">
      <seq>cttttacacatcaaactagcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaagacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23573" stop="22418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23273" g_stop="22718" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E463647" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23273" e_stop="22718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGG</genome_strand>
        <mrna_strand>CTTTTACACATCAAACTAGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAAGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316032" ref_strand="+" ref_description="SGN-E316032 [cTOA-23-G6]">
      <seq>aaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23561" stop="22418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23261" g_stop="22718" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E316032" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23261" e_stop="22718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGG</genome_strand>
        <mrna_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401461" ref_strand="+" ref_description="SGN-E401461 [PPC-4-C4]">
      <seq>gttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23361" stop="22418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23061" g_stop="22718" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E401461" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23061" e_stop="22718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGG</genome_strand>
        <mrna_strand>GTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614236" ref_strand="+" ref_description="SGN-E614236 [64020]">
      <seq>tccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatagttgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaagttgtcttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23306" stop="22419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23006" g_stop="22719" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E614236" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23006" e_stop="22719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGAT-G-TGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGG</genome_strand>
        <mrna_strand>TCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATAGTTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTCTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285270" ref_strand="+" ref_description="SGN-E285270 [cLER-20-C23]">
      <seq>tagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggcttgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23557" stop="22432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23257" g_stop="22732" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285270" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23257" e_stop="22732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAA</genome_strand>
        <mrna_strand>TAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473840" ref_strand="+" ref_description="SGN-E473840 [cSTB-33-N18]">
      <seq>tagcaaccccctcactttcctctctttaaaaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcacccactgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagtgagggaggacttgactacttgggcaacccaagcttggtccatgcacaaagcatcttggccatctgggcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23557" stop="22436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23257" g_stop="22736" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E473840" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23257" e_stop="22736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTG</genome_strand>
        <mrna_strand>TAGCAACCCCCTCACTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCACTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286220" ref_strand="+" ref_description="SGN-E286220 [cLES-11-G12]">
      <seq>caactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23554" stop="22437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23254" g_stop="22737" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E286220" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23254" e_stop="22737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTT</genome_strand>
        <mrna_strand>CAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317524" ref_strand="+" ref_description="SGN-E317524 [cTOB-17-A5]">
      <seq>caaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22738" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E317524" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCT</genome_strand>
        <mrna_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277454" ref_strand="+" ref_description="SGN-E277454 [cLER-3-A11]">
      <seq>gcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaagacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23555" stop="22438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23255" g_stop="22738" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277454" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23255" e_stop="22738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCT</genome_strand>
        <mrna_strand>GCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAAGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476229" ref_strand="+" ref_description="SGN-E476229 [cSTB-43-D12]">
      <seq>cttttacaccatcaaactagcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaagctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23273" g_stop="22739" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E476229" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23273" e_stop="22739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACA-TATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGC</genome_strand>
        <mrna_strand>CTTTTACACCATCAAACTAGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAAGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473010" ref_strand="+" ref_description="SGN-E473010 [cSTB-30-D4]">
      <seq>ctttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatcttggccatctgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23542" stop="22439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23243" g_stop="22739" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E473010" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23243" e_stop="22739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGC</genome_strand>
        <mrna_strand>CTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279777" ref_strand="+" ref_description="SGN-E279777 [cLER-8-M11]">
      <seq>gtgccaagtctgccccatctagcagttcatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctaagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggctcaaggaccgatcccatatcttcagcgagggaggacttgactacttgagcaacccaagcttggtacatgcacagagcatcttggccatctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23407" stop="22440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23108" g_stop="22740" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E279777" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23108" e_stop="22740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGG</genome_strand>
        <mrna_strand>GTGCCAAGTCTGCCCCATCTAGCAGTTCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTAAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGCTCAAGGACCGATCCCATATCTTCAGCGAGGGAGGACTTGACTACTTGAGCAACCCAAGCTTGGTACATGCACAGAGCATCTTGGCCATCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341714" ref_strand="+" ref_description="SGN-E341714 [cTOF-9-B1]">
      <seq>acatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactaacttggcaacccaagcttgggccatgcacagagcatcttggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23568" stop="22445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23268" g_stop="22745" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E341714" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23268" e_stop="22745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCAT</genome_strand>
        <mrna_strand>ACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTAACTTGGCAACCCAAGCTTGGGCCATGCACAGAGCATCTTGGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318558" ref_strand="+" ref_description="SGN-E318558 [cTOB-10-P16]">
      <seq>tacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23569" stop="22451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23269" g_stop="22751" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E318558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23269" e_stop="22751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTT</genome_strand>
        <mrna_strand>TACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295198" ref_strand="+" ref_description="SGN-E295198 [cLET-20-B18]">
      <seq>cttttacatatcaaactagtaacttcctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23573" stop="22452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23273" g_stop="22752" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E295198" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23273" e_stop="22752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCT</genome_strand>
        <mrna_strand>CTTTTACATATCAAACTAGTAACTTCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476366" ref_strand="+" ref_description="SGN-E476366 [cSTB-44-F7]">
      <seq>ctttcctctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgatgtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggtggacttgactacttgggcaacccaagcttggtccatgcacagagcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23542" stop="22452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23243" g_stop="22752" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E476366" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23243" e_stop="22752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCT</genome_strand>
        <mrna_strand>CTTTCCTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGATGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291192" ref_strand="+" ref_description="SGN-E291192 [cLET-2-A11]">
      <seq>ctccctcattatcctatctttaaaaaccatggcagctgctacaatggctctctcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcattccatggaatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgtaacctttgccaagaaccgtgaactcgaggagatccactgcaaatgggctatgcttggagctcttggatgtgacttacctgaactattggcccgtagcggtgacaagttccgtgaggctgtgtggctcaaggccggatcccacatcttcagcgagggaggacttgactacttgggcaacccaagcttggtacatgcacagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23551" stop="22455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23251" g_stop="22755" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E291192" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23251" e_stop="22755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCA</genome_strand>
        <mrna_strand>CTCCCTCATTATCCTATCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTCTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCATTCCATGGAATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGTAACCTTTGCCAAGAACCGTGAACTCGAGGAGATCCACTGCAAATGGGCTATGCTTGGAGCTCTTGGATGTGACTTACCTGAACTATTGGCCCGTAGCGGTGACAAGTTCCGTGAGGCTGTGTGGCTCAAGGCCGGATCCCACATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTACATGCACAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283244" ref_strand="+" ref_description="SGN-E283244 [cLER-17-P2]">
      <seq>agaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatgcacagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23449" stop="22455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23149" g_stop="22755" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E283244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23149" e_stop="22755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCA</genome_strand>
        <mrna_strand>AGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318677" ref_strand="+" ref_description="SGN-E318677 [cTOB-9-M15]">
      <seq>tcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagagaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgctgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactgctgaatcccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcacatgggctatgcttggtgctcttggatgtgtatcccctgagctatgggccccaaacggtgtcaagttcggtgaggctgcgtggttgaaggccgcatcccatatcttcagcgagggaggacttgactacttgggcaacccaagcttgggccatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23540" stop="22462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23240" g_stop="22762" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E318677" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23240" e_stop="22762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCA</genome_strand>
        <mrna_strand>TCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGAGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGCTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGCTGAATCCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCACATGGGCTATGCTTGGTGCTCTTGGATGTGTATCCCCTGAGCTATGGGCCCCAAACGGTGTCAAGTTCGGTGAGGCTGCGTGGTTGAAGGCCGCATCCCATATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGGCCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298962" ref_strand="+" ref_description="SGN-E298962 [cLET-42-I20]">
      <seq>acatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaagggccggatncccagatcttcagcgagggaggacttgactacttgggcaacccaagcttggtccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23568" stop="22464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23268" g_stop="22764" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E298962" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23268" e_stop="22764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAA-GGCCGGAT-CCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATG</genome_strand>
        <mrna_strand>ACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGGCCGGATNCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318579" ref_strand="+" ref_description="SGN-E318579 [cTOB-9-K9]">
      <seq>aatggctctttcttctccttcttttgccggacaggcagagaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggagatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgtctacttgggcaacccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23509" stop="22474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23209" g_stop="22774" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E318579" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23209" e_stop="22774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGC</genome_strand>
        <mrna_strand>AATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGAGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGAGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGTCTACTTGGGCAACCCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289681" ref_strand="+" ref_description="SGN-E289681 [cLET-4-C23]">
      <seq>ctagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaacccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23558" stop="22475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23258" g_stop="22775" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23258" e_stop="22775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAG</genome_strand>
        <mrna_strand>CTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324819" ref_strand="+" ref_description="SGN-E324819 [cTOC-8-L16]">
      <seq>tacaatggctctttcttctccttcttttgccggacaggcggagaaacggtcaccctctgcctcaaaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctaacagtccatggtatggccctgaccgcgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23512" stop="22477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23212" g_stop="22777" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E324819" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23212" e_stop="22777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCA</genome_strand>
        <mrna_strand>TACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCGGAGAAACGGTCACCCTCTGCCTCAAAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAACAGTCCATGGTATGGCCCTGACCGCGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281622" ref_strand="+" ref_description="SGN-E281622 [cLER-14-I19]">
      <seq>aactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactacttgggcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23553" stop="22480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23253" g_stop="22780" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E281622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23253" e_stop="22780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAAC</genome_strand>
        <mrna_strand>AACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473814" ref_strand="+" ref_description="SGN-E473814 [cSTB-33-J12]">
      <seq>atcaaactagcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctgttggcccgtaatggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcgagggaggacttgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23564" stop="22489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23264" g_stop="22789" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E473814" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23264" e_stop="22789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTAC</genome_strand>
        <mrna_strand>ATCAAACTAGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTGTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289719" ref_strand="+" ref_description="SGN-E289719 [cLET-4-F17]">
      <seq>aaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcccagatcttcagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23527" stop="22505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23227" g_stop="22805" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23227" e_stop="22805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGA</genome_strand>
        <mrna_strand>AACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290954" ref_strand="+" ref_description="SGN-E290954 [cLET-8-G20]">
      <seq>acatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttcaaggccggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23568" stop="22519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23268" g_stop="22819" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E290954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23268" e_stop="22819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCC</genome_strand>
        <mrna_strand>ACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294816" ref_strand="+" ref_description="SGN-E294816 [cLET-17-F16]">
      <seq>aaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23561" stop="22531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23261" g_stop="22831" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23261" e_stop="22831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTC</genome_strand>
        <mrna_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265871" ref_strand="+" ref_description="SGN-E265871 [cLEI-11-H1]">
      <seq>gcctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23548" stop="22534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23249" g_stop="22834" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E265871" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23249" e_stop="22834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGG</genome_strand>
        <mrna_strand>GCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311530" ref_strand="+" ref_description="SGN-E311530 [cTOA-6-I7]">
      <seq>tttacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggtgtcaagttcggtgaggctgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23571" stop="22536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23271" g_stop="22836" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E311530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23271" e_stop="22836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGT</genome_strand>
        <mrna_strand>TTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294472" ref_strand="+" ref_description="SGN-E294472 [cLET-14-H16]">
      <seq>aaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgctgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtactcgggcccattctctggtgagtccccaagctacttgactggcgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggcccgtaacggcgtcaagttcggtgaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23561" stop="22540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23261" g_stop="22840" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294472" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23261" e_stop="22840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCT</genome_strand>
        <mrna_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGCTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTCGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGCGTCAAGTTCGGTGAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294473" ref_strand="+" ref_description="SGN-E294473 [cLET-14-H16](-)">
      <seq>agcctcaccgaacttgacgccgttacgggccaatagctcagggaagacacatccaagagcaccaagcatagcccatctgcagtggatcacctcgagttcacggttcttggcaaaggtttcagggtctgctgagagtccagcggtatcccagccgtagtcaccagggaattcgccagtcaagtagcttggggactcaccagagaatgggcccgagtacttaacacggtcagggccataccatggactgctagatggggcagacttggcagcagcctttctcatggtgatccttccatttccagagatttctgaggcagagggtgagagtttcactgcctgtccggcaaaagaaggagaagaaagagccattgtagcagctgccatggtttttaaagagaggaaaatgagggagttgctagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22540" stop="23561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22840" g_stop="23261" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E294473" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22840" e_stop="23261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGACTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATGGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGGAGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTTTAAAGAGAGGAAAATGAGGGAGTTGCTAGTTT</genome_strand>
        <mrna_strand>AGCCTCACCGAACTTGACGCCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCGCCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCGAGTACTTAACACGGTCAGGGCCATACCATGGACTGCTAGATGGGGCAGACTTGGCAGCAGCCTTTCTCATGGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGGAGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTTTAAAGAGAGGAAAATGAGGGAGTTGCTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293119" ref_strand="+" ref_description="SGN-E293119 [cLET-12-F1]">
      <seq>aaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgcgttaagtacttgggcccattctctggtgagaccccaagctacttgactggggaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23561" stop="22566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23261" g_stop="22866" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E293119" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23261" e_stop="22866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCC</genome_strand>
        <mrna_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGCGTTAAGTACTTGGGCCCATTCTCTGGTGAGACCCCAAGCTACTTGACTGGGGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277502" ref_strand="+" ref_description="SGN-E277502 [cLER-3-D17]">
      <seq>aaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctctgccaataaccatgtacctatttgagcccattgcctattggatatgcttggtgctcttggatgtgtcttccctgagctattggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23561" stop="22567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23261" g_stop="22867" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E277502" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23261" e_stop="22867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGA-TCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCC</genome_strand>
        <mrna_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTCTGCCAATAACCATGTAC-CTATTTGAGCCCATTGCCTATTGGATATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347708" ref_strand="+" ref_description="SGN-E347708 [cTOF-26-I23]">
      <seq>tcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23563" stop="22569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22869" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGG</genome_strand>
        <mrna_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291444" ref_strand="+" ref_description="SGN-E291444 [cLET-2-C4]">
      <seq>aaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23561" stop="22569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23261" g_stop="22869" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E291444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23261" e_stop="22869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGG</genome_strand>
        <mrna_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475978" ref_strand="+" ref_description="SGN-E475978 [cSTB-42-N8]">
      <seq>ctttcctctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatcactggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23542" stop="22571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23243" g_stop="22871" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E475978" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23243" e_stop="22871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATT</genome_strand>
        <mrna_strand>CTTTCCTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCACTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285533" ref_strand="+" ref_description="SGN-E285533 [cLES-10-I10]">
      <seq>tagcactctctcattttcgctcttgaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctgagctatggccgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23557" stop="22561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23257" g_stop="22873" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E285533" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23257" e_stop="22873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTA</genome_strand>
        <mrna_strand>TAGCA-CTCTCTCATTTT-CGCTC-TTGAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318982" ref_strand="+" ref_description="SGN-E318982 [cTOB-14-P19]">
      <seq>tcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23563" stop="22578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22878" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E318982" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTG</genome_strand>
        <mrna_strand>TCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322561" ref_strand="+" ref_description="SGN-E322561 [cTOB-26-D12]">
      <seq>caaactagcaactccctcattttcctctctttaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctccttggatgtgtcttccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22878" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E322561" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCT-CTTGGATGTGTCTTCCCTG</genome_strand>
        <mrna_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAA-AACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCCTTGGATGTGTCTTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475656" ref_strand="+" ref_description="SGN-E475656 [cSTB-41-G12]">
      <seq>agcaaccccctcactttcctctctttaaaaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcacccactgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacgggtgggataccgctggactttcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgtcttccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23556" stop="22578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23256" g_stop="22878" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E475656" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23256" e_stop="22878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTG</genome_strand>
        <mrna_strand>AGCAACCCCCTCACTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCACTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338942" ref_strand="+" ref_description="SGN-E338942 [cTOE-21-L4]">
      <seq>tagcatctccctcattttcctctctttataaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcagatgggctatgcttggtgctcttggatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23557" stop="22586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23257" g_stop="22886" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E338942" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23257" e_stop="22886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGT</genome_strand>
        <mrna_strand>TAGCATCTCCCTCATTTTCCTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203081" ref_strand="+" ref_description="SGN-E203081 [cLEB-3-F15]">
      <seq>gcacgagctccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccactgcatatgggctatgcttggtgctcttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23553" stop="22590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23258" g_stop="22890" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E203081" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23258" e_stop="22890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGAT</genome_strand>
        <mrna_strand>GCACGAGCTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCATATGGGCTATGCTTGGTGCTCTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725588" ref_strand="+" ref_description="SGN-E725588 [LA04AF03]">
      <seq>tacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtgaactcgaggtgatccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23569" stop="22621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23269" g_stop="22921" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E725588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23269" e_stop="22921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCAC</genome_strand>
        <mrna_strand>TACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284363" ref_strand="+" ref_description="SGN-E284363 [cLER-16-I21]">
      <seq>aaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgactacggctgggataccgctggactctcagcagaccctgaaacctttgccaagaaccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23527" stop="22638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23227" g_stop="22938" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E284363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23227" e_stop="22938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTG</genome_strand>
        <mrna_strand>AACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278309" ref_strand="+" ref_description="SGN-E278309 [cLEL-2-M19](-)">
      <seq>aggtttcagggtctgctgagagtccagcggtatcccagccgtagtcaccagggaattcaccagtcaagtagcttggggactcaccagagaatgggcccaagtacttaacacggtcagggccataccatggactgctagatggggcagacttggcaacagcctttctcatggtgatccttccgtttccagagatttctgaggcagagggtgagagtttcactgcctgtccggcaaaagaaggagaagaaagagccattgtactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22653" stop="23512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22953" g_stop="23220" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E278309" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22953" e_stop="23220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGACTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATGGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGGAGAAGAAAGAGCCATTGTAGCAGCTGC</genome_strand>
        <mrna_strand>AGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGACTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATGGTGATCCTTCCGTTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGGAGAAGAAAGAGCCATTGTA-CTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474312" ref_strand="+" ref_description="SGN-E474312 [cSTB-36-I15]">
      <seq>ctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggataccgctggactttcagcagacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23547" stop="22662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23247" g_stop="22962" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E474312" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23247" e_stop="22962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACC</genome_strand>
        <mrna_strand>CTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTCAGCAGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470817" ref_strand="+" ref_description="SGN-E470817 [cSTB-20-L9]">
      <seq>aaactagcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccaaaccgtgttaattacttgggcccattctctggtgagtccccaaactactttaccagggaattccctggtgactatgggtgggataccgctggactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23561" stop="22670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23261" g_stop="22970" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E470817" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23261" e_stop="22970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTC</genome_strand>
        <mrna_strand>AAACTAGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAAACCGTGTTAATTACTTGGGCCCATTCTCTGGTGAGTCCCCAAACTACTTTACCAGGGAATTCCCTGGTGACTATGGGTGGGATACCGCTGGACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475699" ref_strand="+" ref_description="SGN-E475699 [cSTB-41-O22]">
      <seq>caaactagcaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgaccggtgaattccctggtgactatgggtgggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="22982" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E475699" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="22982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATAC</genome_strand>
        <mrna_strand>CAAACTAGCAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGGTGGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319826" ref_strand="+" ref_description="SGN-E319826 [cTOB-12-D12]">
      <seq>tgctacaatggctctttcttctccttcttttgccggacaggcagagaaactctcaccctctgcctcacaaatctctggaaatggaaggatcaccatcaaaaaggctgatcccaagtctgccccatctaacaaaccatggtatggccctgaccgtgttgagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23515" stop="22696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23215" g_stop="22996" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E319826" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23215" e_stop="22996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGAC</genome_strand>
        <mrna_strand>TGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGAGAAACTCTCACCCTCTGCCTCACAAATCTCTGGAAATGGAAGGATCACCATCAAAAAGGCTGATCCCAAGTCTGCCCCATCTAACAAACCATGGTATGGCCCTGACCGTGTTGAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319922" ref_strand="+" ref_description="SGN-E319922 [cTOB-12-F4]">
      <seq>tccttcttttgccggacaggcagagaaactctcaccctctgcctcacaaatctctggaaatggaaggatcaccatgagaaaggctgtcgccaagtctgccccatctagcactccatggtatggccctgaccgcgttaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccctggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23494" stop="22697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23194" g_stop="22997" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E319922" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23194" e_stop="22997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGA</genome_strand>
        <mrna_strand>TCCTTCTTTTGCCGGACAGGCAGAGAAACTCTCACCCTCTGCCTCACAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCACTCCATGGTATGGCCCTGACCGCGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289708" ref_strand="+" ref_description="SGN-E289708 [cLET-4-O7]">
      <seq>ttacatatcaaactagcaactccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgcggtaagtacttgggcccattctctggtgagtccccaagctacttgactggtgaattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23570" stop="22703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23270" g_stop="23003" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E289708" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23270" e_stop="23003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCC</genome_strand>
        <mrna_strand>TTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGCGGTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287840" ref_strand="+" ref_description="SGN-E287840 [cLES-19-A17]">
      <seq>ctccctcattttcctctctttaaaaaccatggcagctgctacaatggctctttcttctccttcttttgccggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcaccatgagaaaggctgttgccaagtctgccccatctagcagtccatggtatggccctgaccgtgttaagtacttgggcccattctctggtgagtccccaagctacttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23551" stop="22713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23251" g_stop="23013" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E287840" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23251" e_stop="23013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTG</genome_strand>
        <mrna_strand>CTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279976" ref_strand="+" ref_description="SGN-E279976 [cLEL-7-A7](-)">
      <seq>agtcaagtagcttggggactcgccagagaatgggcccaagtacttaacacggtcagggccataccatggtctgctagatggggcagacttggcaccagcctttctcatggtgatccttccatttccagagatttctgaggcagagggtgagagtttcactgcctgtccggcaaaagaaggagaagaaagagccattgtagcagctgccatggtttttaaagagagtagaatgaggccgttgctagtttgatatgtaacagttagttgtgatttcatagaatggatctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="22714" stop="23584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23014" g_stop="23282" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E279976" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23014" e_stop="23282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGACTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATGGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGGAGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTTTAAAGAGAGGAAAATGAGGGAGTTGCTAGTTTGATATGTAAAAGTTAGTTGTG</genome_strand>
        <mrna_strand>AGTCAAGTAGCTTGGGGACTCGCCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGTCTGCTAGATGGGGCAGACTTGGCACCAGCCTTTCTCATGGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGGAGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTTTAAAGAGAGTAGAATGAGGCCGTTGCTAGTTTGATATGTAACAGTTAGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462289" ref_strand="+" ref_description="SGN-E462289 [cPRO-11-O23]">
      <seq>caaactaacaaccccctcactttactctctttataaaccatggcagctgctacaatggctctttcttccccttcttttgctggacaggcagtgaaactctcaccctctgcctcagaaatctctggaaatggaaggatcactatgagaaaggctgtcgccaagtctgccccatctagcagcccatggtatggcccagaccgtgttaagtacttgggcccattctctggtgagtccccaagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="23562" stop="22719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23262" g_stop="23019" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E462289" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23262" e_stop="23019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACT</genome_strand>
        <mrna_strand>CAAACTAACAACCCCCTCACTTTACTCTCTTTATAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739900" ref_strand="+" ref_description="SGN-E739900 [LC19BB07]">
      <seq>ccctagcataaccgagcaccttaaccaggttcctgtgtttgagttggctcagagtcttgacttccctatcaaagcatttacgaatttctgctgagaactgaagattcagtttcttaactgctacaattttcccaccttccagtgttcctttgtacacattacttgaactgctggctccaataatgttttgtggactgaaattatcagtagcatgttccaaatccttttgataaaatctctggaggctaagtgctgaggtataatttggaattatatcctccgagtctttcactttttgcttcttcatgtacagatgacacacaaatattcccaccacatgaagaatgagaaccaaaacaggcccaagtatgatccaggttttcttggacaacccatgagaacttgtttggtttcttttgatgctgcatggactgagaaactccgttccacatagcgatggatttccctgtaaatctgctgaccttaagttgtcgaatacacccccctttggaatgtgaccttcaagctggttaaaagaaaggttgagatatattaatgcaggcatattggcaaatctctcaggaatgattcccttgaacttgttttgtgaaagatcaagtgagcgaagatgtagcaatcctaccatttcaggaagtttgccttctaatctgttccttgagaggttcaagaatactagctcacttaacttggtcagaatttcgcctggagcaggaccagacagcatgtttcctgacaggtccagtgagaataagtttttgcagcgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="26438" stop="27825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26738" g_stop="27525" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E739900" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26738" e_stop="27525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCATAACCGAGCACCTTAACCAGGTTCCTGTGTTTGAGTTGGCTCAGAGTCTTGACTTCCCTATCAAAGCATTTACGAATTTCTGCTGAGAACTGAAGATTCAGTTTCTTAACTGCTACAATTTTCCCACCTTCCAGTGTTCCTTTGTACACATTACTTGAACTGCTGGCTCCAATAATGTTTTGTGGACTGAAATTATCAGTAGCATGTTCCAAATCCTTTTGATAAAATCTCTGGAGGCTAAGTGCTGAGGTATAATTTGGAATTATATCCTCCGAGTCTTTCACTTTTTGCTTCTTCATGTACAGATGACACACAAATATTCCCACCACATGAAGAATGAGAACCAAAACAGGCCCAAGTATGATCCAGGTTTTCTTGGACAACCCATGAGAACTTGTTTGGTTTCTTTTGATGCTGCATGGACTGAGAAACTCCGTTCCACATAGCGATGGATTTCCCTGTAAATCTGCTGACCTTAAGTTGTCGAATACACCCCCCTTTGGAATGTGACCTTCAAGCTGGTTAAAAGAAAGGTTGAGATATATTAATGCAGGCATATTGGCAAATCTCTCAGGAATGATTCCCTTGAACTTGTTTTGTGAAAGATCAAGTGAGCGAAGATGTAGCAATCCTACCATTTCAGGAAGTTTGCCTTCTAATCTGTTCCTTGAGAGGTTCAAGAATACTAGCTCACTTAACTTGGTCAGAATTTCGCCTGGAGCAGGACCAGACAGCATGTTTCCTGACAGGTCCAGTGAGAATAAGTTTTTGCAGCGTCCT</genome_strand>
        <mrna_strand>CCCTAGCATAACCGAGCACCTTAACCAGGTTCCTGTGTTTGAGTTGGCTCAGAGTCTTGACTTCCCTATCAAAGCATTTACGAATTTCTGCTGAGAACTGAAGATTCAGTTTCTTAACTGCTACAATTTTCCCACCTTCCAGTGTTCCTTTGTACACATTACTTGAACTGCTGGCTCCAATAATGTTTTGTGGACTGAAATTATCAGTAGCATGTTCCAAATCCTTTTGATAAAATCTCTGGAGGCTAAGTGCTGAGGTATAATTTGGAATTATATCCTCCGAGTCTTTCACTTTTTGCTTCTTCATGTACAGATGACACACAAATATTCCCACCACATGAAGAATGAGAACCAAAACAGGCCCAAGTATGATCCAGGTTTTCTTGGACAACCCATGAGAACTTGTTTGGTTTCTTTTGATGCTGCATGGACTGAGAAACTCCGTTCCACATAGCGATGGATTTCCCTGTAAATCTGCTGACCTTAAGTTGTCGAATACACCCCCCTTTGGAATGTGACCTTCAAGCTGGTTAAAAGAAAGGTTGAGATATATTAATGCAGGCATATTGGCAAATCTCTCAGGAATGATTCCCTTGAACTTGTTTTGTGAAAGATCAAGTGAGCGAAGATGTAGCAATCCTACCATTTCAGGAAGTTTGCCTTCTAATCTGTTCCTTGAGAGGTTCAAGAATACTAGCTCACTTAACTTGGTCAGAATTTCGCCTGGAGCAGGACCAGACAGCATGTTTCCTGACAGGTCCAGTGAGAATAAGTTTTTGCAGCGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406473" ref_strand="+" ref_description="SGN-E406473 [PPI-3-L24]">
      <seq>gaatggcataaacaagctagttcagattgtggatcctaatctagcttcatatgtctccaagaaacaggatgtagtagagggacttcttaacttggctttgtcctgcacctctcctgatcctgaagatagacctgacatggaacaagttctgtcttctctttcaaagctaagtaagatggactgcatgccttcgcatttggtaaaagattaaatttgatgtagaagaagctggaatatcatcactcttaatgtgaaccaccaccaagtttcccatggtggctaatggaactagtgcataacttaaaatgtatttactatttaaataaatttcccatatttcaagccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="34050" stop="33101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33750" g_stop="33393" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E406473" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33750" e_stop="33393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGCATAAACAAGCTAGTTCAGATTGTGGATCCTAATCTAGCTTCATATGTCTCCAAGAAACAGGATGTAGTAGAGGGACTTCTTAACTTGGCTTTGTCCTGCACCTCTCCTGATCCTGAAGATAGACCTGACATGGAACAAGTTCTGTCTTCTCTTTCAAAGCTAAGTAAGATGGACTGTATGCCTTCTCATTTGGTAAAAGATTAAATTTGATGTAGAAGAAGCTGGAATATCATCACTCTTAATGTGAACCACCACCAAGTTTCCCATGGTGGCTAATGGAACTAGTTCATAACTTAAAATGCATTTACTATTTAAATAATTTTTCCGTATTTCAAGCCATAAATGATGATC</genome_strand>
        <mrna_strand>GAATGGCATAAACAAGCTAGTTCAGATTGTGGATCCTAATCTAGCTTCATATGTCTCCAAGAAACAGGATGTAGTAGAGGGACTTCTTAACTTGGCTTTGTCCTGCACCTCTCCTGATCCTGAAGATAGACCTGACATGGAACAAGTTCTGTCTTCTCTTTCAAAGCTAAGTAAGATGGACTGCATGCCTTCGCATTTGGTAAAAGATTAAATTTGATGTAGAAGAAGCTGGAATATCATCACTCTTAATGTGAACCACCACCAAGTTTCCCATGGTGGCTAATGGAACTAGTGCATAACTTAAAATGTATTTACTATTTAAATAAATTTCCCATATTTCAAGCCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420576" ref_strand="+" ref_description="SGN-E420576 [STM-31-O10]">
      <seq>gaatggcataaacaagctagttcagattgtggatcctaatctagcttcatatgtctccaagaaacaggatgtagtagagggacttcttaacttggctttgtcctgcacctctcctgatcctgaagatagacctgacatggaacaagttctgtcttctctttcaaagctaagtaagatggactgcatgccttcgcatttggtaaaagattaaatttgatgtagaagaagctggaatatcatcactcttaatgtgaaccaccaccaagtttcccatggtggctaatggaactagtgcataacttaaaatgtatttactatttaaataaatttcccatatttcaagccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="34050" stop="33101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33750" g_stop="33393" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E420576" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33750" e_stop="33393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGCATAAACAAGCTAGTTCAGATTGTGGATCCTAATCTAGCTTCATATGTCTCCAAGAAACAGGATGTAGTAGAGGGACTTCTTAACTTGGCTTTGTCCTGCACCTCTCCTGATCCTGAAGATAGACCTGACATGGAACAAGTTCTGTCTTCTCTTTCAAAGCTAAGTAAGATGGACTGTATGCCTTCTCATTTGGTAAAAGATTAAATTTGATGTAGAAGAAGCTGGAATATCATCACTCTTAATGTGAACCACCACCAAGTTTCCCATGGTGGCTAATGGAACTAGTTCATAACTTAAAATGCATTTACTATTTAAATAATTTTTCCGTATTTCAAGCCATAAATGATGATC</genome_strand>
        <mrna_strand>GAATGGCATAAACAAGCTAGTTCAGATTGTGGATCCTAATCTAGCTTCATATGTCTCCAAGAAACAGGATGTAGTAGAGGGACTTCTTAACTTGGCTTTGTCCTGCACCTCTCCTGATCCTGAAGATAGACCTGACATGGAACAAGTTCTGTCTTCTCTTTCAAAGCTAAGTAAGATGGACTGCATGCCTTCGCATTTGGTAAAAGATTAAATTTGATGTAGAAGAAGCTGGAATATCATCACTCTTAATGTGAACCACCACCAAGTTTCCCATGGTGGCTAATGGAACTAGTGCATAACTTAAAATGTATTTACTATTTAAATAAATTTCCCATATTTCAAGCCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E420577" ref_strand="+" ref_description="SGN-E420577 [STM-31-O10]">
      <seq>gaaatatgggaattctatttaaatagtaaatacattttaagttatgcactagttccattagccaccatgggaaacttggtggtggttcacattaagagtgatgatattccagcttcttctacatcaaatttaatcttttaccaaatgcgaaggcatgcagtccatcttacttagctttgaaagagaagacagaacttgttccatgtcaggtctatcttcaggatcaggagaggtgcaggacaaagccaagttaagaagtccctctactacatcctgtttcttggagacatatgaagctagattaggatccacaatctgaactagcttgtttatgccattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="33122" stop="34050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33411" g_stop="33750" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E420577" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33411" e_stop="33750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATACGGAAAAATTATTTAAATAGTAAATGCATTTTAAGTTATGAACTAGTTCCATTAGCCACCATGGGAAACTTGGTGGTGGTTCACATTAAGAGTGATGATATTCCAGCTTCTTCTACATCAAATTTAATCTTTTACCAAATGAGAAGGCATACAGTCCATCTTACTTAGCTTTGAAAGAGAAGACAGAACTTGTTCCATGTCAGGTCTATCTTCAGGATCAGGAGAGGTGCAGGACAAAGCCAAGTTAAGAAGTCCCTCTACTACATCCTGTTTCTTGGAGACATATGAAGCTAGATTAGGATCCACAATCTGAACTAGCTTGTTTATGCCATTC</genome_strand>
        <mrna_strand>GAAATATGGGAATTCTATTTAAATAGTAAATACATTTTAAGTTATGCACTAGTTCCATTAGCCACCATGGGAAACTTGGTGGTGGTTCACATTAAGAGTGATGATATTCCAGCTTCTTCTACATCAAATTTAATCTTTTACCAAATGCGAAGGCATGCAGTCCATCTTACTTAGCTTTGAAAGAGAAGACAGAACTTGTTCCATGTCAGGTCTATCTTCAGGATCAGGAGAGGTGCAGGACAAAGCCAAGTTAAGAAGTCCCTCTACTACATCCTGTTTCTTGGAGACATATGAAGCTAGATTAGGATCCACAATCTGAACTAGCTTGTTTATGCCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396679" ref_strand="+" ref_description="SGN-E396679 [TUS-43-D21](-)">
      <seq>tcatttcaaaaagaaggccaacaagtcttacaggagcagatgaattaccaattacattgcatcaaattgttcagaatgcccataaaaacaaaataaacaagctagttcagattgtggatcctaatctagcttcatatgtttccaagaaacaggatgtagtagagggacttcttaacttggctttgtcctgcacctctcctgatcctgaagatagacctgacatggaacaagttctgtcttctctttcaaagctaagtaagatggacttcatgccttctcatttggtaaaagattaaatttgatgtagaagaagctggaatatcatcacttttaatgtgaaccaccactaagtttcccactggtggctaatggaagttttttaaaagttaaaatgcatttactatttaaataatttttccttataaagggccataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="34135" stop="33114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33835" g_stop="33418" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="444"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E396679" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33835" e_stop="33418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACAAAAAGAAGGCCAACAAGTCTTACAGGAGCAGATGAATTACCAATTACTTTGCATCAAATTGTTCAGAATGCCCTTGCGAATGGCATAAACAAGCTAGTTCAGATTGTGGATCCTAATCTAGCTTCATATGTCTCCAAGAAACAGGATGTAGTAGAGGGACTTCTTAACTTGGCTTTGTCCTGCACCTCTCCTGATCCTGAAGATAGACCTGACATGGAACAAGTTCTGTCTTCTCTTTCAAAGCTAAGTAAGATGGACTGTATGCCTTCTCATTTGGTAAAAGATTAAATTTGATGTAGAAGAAGCTGGAATATCATCACTCTTAATGTGAACCACCACCAAGTTTCCCA-TGGTGGCTAATGGAACTAGTTCATAACTTAAAATGCATTTACTATTTAAATAATTTTTCC</genome_strand>
        <mrna_strand>TCATTTCAAAAAGAAGGCCAACAAGTCTTACAGGAGCAGATGAATTACCAATTACATTGCATCAAATTGTTCAGAATGCCCATAAAAACAAAATAAACAAGCTAGTTCAGATTGTGGATCCTAATCTAGCTTCATATGTTTCCAAGAAACAGGATGTAGTAGAGGGACTTCTTAACTTGGCTTTGTCCTGCACCTCTCCTGATCCTGAAGATAGACCTGACATGGAACAAGTTCTGTCTTCTCTTTCAAAGCTAAGTAAGATGGACTTCATGCCTTCTCATTTGGTAAAAGATTAAATTTGATGTAGAAGAAGCTGGAATATCATCACTTTTAATGTGAACCACCACTAAGTTTCCCACTGGTGGCTAATGGAAGTTTTTTAAAAGTTAAAATGCATTTACTATTTAAATAATTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205259" ref_strand="+" ref_description="SGN-E205259 [cLEC-25-H9]">
      <seq>tttactgggaaatccatctctatgtggaaaaaagtttctcagtccatgccacataaaaagaaaccgaacgagttctcatggtttttccaagaaaacctggatcatacttgcagcacttggatctgttttcagtctcattcttcttgtcctgggaatatttttatttcatcggtacatgaagaagaagaaaaaagtgaatgacacggagtttacaaatccaaagtgtaccgcagcactgagcctccagagattttatcaaaaggatttggaacatgctaccaataatttccgtccggaaaacattattggagccagcagtttaagtactgtgtacaaaggaacactggaagatgggaagattgtagcagttaagaagctgaatcaccagttctcagcagaatctggtaaatgttttgatagggaagtcaagactctgagccaactcagacacaggaacctagttaaggtgctaggttacgcttgggaaagcaagaagctaagggctttagttttagaatacatggagaatgggaacttggacaacatgatttattgtcaagtagaggatgactggacgttgtccaacaggattgatattttagtttcagttgcaagtggactatcatacctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="35469" stop="34239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35169" g_stop="34539" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E205259" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35169" e_stop="34539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTGGGAAATCCATCTCTATGTGGAAAAAAGTTTCTCAGTCCATGCCACATAAAAAGAAACCGAACAAGTTCTCATGGTTTTTCCAAGAAAACCTGGATCATACTTGCAGCACTTGGATCTGTTTTCAGTCTCATTCTTCTTGTCCTGGGAATATTTTTATTTCATCGGTACAT---GAAGAAGAAAAAAGTGAATGACACGGAGTTTACAAATCCAAAGTGTACCGCAGCACTGAGCCTCCAGAGATTTTATCAAAAGGATTTGGAACATGCTACCAATAATTTCCGTCCGGAAAACATTATTGGAGCCAGCAGTTTAAGTACTGTGTACAAAGGAACACTGGAAGATGGGAAGATTGTAGCAGTTAAGAAGCTGAATCACCAGTTCTCAGCAGAATCTGGTAAATGTTTTGATAGGGAAGTCAAGACTCTGAGCCAACTCAGACACAGGAACCTAGTTAAGGTGCTAGGTTACGCTTGGGAAAGCAAGAAGCTAAGGGCTTTAGTTTTAGAATACATGGAGAATGGGAACTTGGACAACATGATTTATGGTCAAGTAGAGGATGACTGGACGTTGTCCAACAGGATTGATATTTTAGTTTCAGTTGCAAGTGGACTATCATACCTGCAT</genome_strand>
        <mrna_strand>TTTACTGGGAAATCCATCTCTATGTGGAAAAAAGTTTCTCAGTCCATGCCACATAAAAAGAAACCGAACGAGTTCTCATGGTTTTTCCAAGAAAACCTGGATCATACTTGCAGCACTTGGATCTGTTTTCAGTCTCATTCTTCTTGTCCTGGGAATATTTTTATTTCATCGGTACATGAAGAAGAAGAAAAAAGTGAATGACACGGAGTTTACAAATCCAAAGTGTACCGCAGCACTGAGCCTCCAGAGATTTTATCAAAAGGATTTGGAACATGCTACCAATAATTTCCGTCCGGAAAACATTATTGGAGCCAGCAGTTTAAGTACTGTGTACAAAGGAACACTGGAAGATGGGAAGATTGTAGCAGTTAAGAAGCTGAATCACCAGTTCTCAGCAGAATCTGGTAAATGTTTTGATAGGGAAGTCAAGACTCTGAGCCAACTCAGACACAGGAACCTAGTTAAGGTGCTAGGTTACGCTTGGGAAAGCAAGAAGCTAAGGGCTTTAGTTTTAGAATACATGGAGAATGGGAACTTGGACAACATGATTTATTGTCAAGTAGAGGATGACTGGACGTTGTCCAACAGGATTGATATTTTAGTTTCAGTTGCAAGTGGACTATCATACCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398605" ref_strand="+" ref_description="SGN-E398605 [TUS-43-D21]">
      <seq>accctttgggagatccatctctatgtggaaaaaagtttctcagtccatgccacataaaaagaaaccgaacaagttctcatggtttttccaagaaaacctggatcatacttgcagcacttggatctgttttcagtctcattcttcttgtcctgggaatatttttatttcatcggtacatgaagaagaagaaaaaagtgaatgacacggagtttacaaatccaaagtgtaacacaccactgagcctccacagataataccaaaaggatctggaaaatgatactaataagttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="35464" stop="34582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35170" g_stop="34882" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E398605" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35170" e_stop="34882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACTGGGAAATCCATCTCTATGTGGAAAAAAGTTTCTCAGTCCATGCCACATAAAAAGAAACCGAACAAGTTCTCATGGTTTTTCCAAGAAAACCTGGATCATACTTGCAGCACTTGGATCTGTTTTCAGTCTCATTCTTCTTGTCCTGGGAATATTTTTATTTCATCGGTACAT---GAAGAAGAAAAAAGTGAATGACACGGAGTTTACAAATCCAAAGTGTACCGCAGCACTGAGCCTCCAGAGATTTTATCAAAAGGATTTGGAACATGCTACCAATAATTTCCG</genome_strand>
        <mrna_strand>ACCCTTTGGGAGATCCATCTCTATGTGGAAAAAAGTTTCTCAGTCCATGCCACATAAAAAGAAACCGAACAAGTTCTCATGGTTTTTCCAAGAAAACCTGGATCATACTTGCAGCACTTGGATCTGTTTTCAGTCTCATTCTTCTTGTCCTGGGAATATTTTTATTTCATCGGTACATGAAGAAGAAGAAAAAAGTGAATGACACGGAGTTTACAAATCCAAAGTGTAACACACCACTGAGCCTCCACAGATAATACCAAAAGGATCTGGAAAATGATACTAATAAGTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246215" ref_strand="+" ref_description="SGN-E246215 [cLEF-40-A23]">
      <seq>ttttttttttaaagtgtaatcatcaacccattatccattaaaacaaatcatcaaagtcatacaacaacaataacaaatagcagctccaataggtgaaagagtgtcacatattggagaaattattcaaatgccttaatagagtttgcaactagtggaaacatactatatgctagaatgagaaattagatatagcagctagctactacagcagacttattgtcctatcgctggacaaaggaccatattctacgttacgttaccccctccagagcagcaactcagcaatacgacggtataagtagttcttcttcacataagcaaaagatatgactagggttcataatcatgtgacggtgataaaggaagcgaaattacctataccacaaaggatatcaggcatatgtcttcagattatcgactccaagcttctgcacttccaccttaagtgacttgaggtatctgacagcttcatcaagaacggtgacagtattcatcctgctggcaccagggacgattccctttaatgccttgaccatcttcttaagtttcctgcgttttctctcactgcaattgctagtactgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="44115" stop="45291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44406" g_stop="44991" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E246215" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44406" e_stop="44991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTTGCATAAAGTGTAATCATCAACCCATTATCCATTAAAACAAATCATCAAAGTCATACAACAACAATAACAAATAGCAGCTCCAATAGGTGAAAGAGTGTCACATATTGGAGAAATTATTCAAATGCCTTAATAGAGTTTGCAACTAGTGGAAACATACTATATGCTAGAATGAGAAATTAGATATAGCAGCTAGCTACTACAGCAGACTTATTGTCCTATCGCTGGACAAAGGACCATATTCTACGTTACGTTACCCCCTCCAGAGCAGCAACTCAGCAATACGACGGTATAAGTAGTTCTTCTTCACATAAGCAAAAGATATGACTAGGGTTCATAATCATGTGACGGTGATAAAGGAAGCGAAATTACCTATACCACAAAGGATATCAGGCATATGTCTTCAGATTATCGACTCCAAGCTTCTGCACTTCCACCTTAAGTGACTTGAGGTATCTGACAGCTTCATCAAGAACGGTGACAGTATTCATCCTGCTGGCACCAGGGACGATTCCCTTTAATGCCTTGACCATCTTCTTAAGTTTCCTGCGTTTTCTCTCACTGCAATTGCTAGTACTGCTAC</genome_strand>
        <mrna_strand>TTTTTTTTTTAAAGTGTAATCATCAACCCATTATCCATTAAAACAAATCATCAAAGTCATACAACAACAATAACAAATAGCAGCTCCAATAGGTGAAAGAGTGTCACATATTGGAGAAATTATTCAAATGCCTTAATAGAGTTTGCAACTAGTGGAAACATACTATATGCTAGAATGAGAAATTAGATATAGCAGCTAGCTACTACAGCAGACTTATTGTCCTATCGCTGGACAAAGGACCATATTCTACGTTACGTTACCCCCTCCAGAGCAGCAACTCAGCAATACGACGGTATAAGTAGTTCTTCTTCACATAAGCAAAAGATATGACTAGGGTTCATAATCATGTGACGGTGATAAAGGAAGCGAAATTACCTATACCACAAAGGATATCAGGCATATGTCTTCAGATTATCGACTCCAAGCTTCTGCACTTCCACCTTAAGTGACTTGAGGTATCTGACAGCTTCATCAAGAACGGTGACAGTATTCATCCTGCTGGCACCAGGGACGATTCCCTTTAATGCCTTGACCATCTTCTTAAGTTTCCTGCGTTTTCTCTCACTGCAATTGCTAGTACTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216303" ref_strand="+" ref_description="SGN-E216303 [cLEL-13-P2](-)">
      <seq>tattgctgagttgctgctctggagggggtaacgtaacgtagaatatggtcctttgtccagcgataggacaataagtctgctgtagtagctagctgctatatctaatttctcattctagcatatagtatgtttcccctagttgcaaactctattaaggcatttgaataatttctccaatatgtgacactctttcacctattggagctgctatttgttattgttgttgtatgactttgatgatttgttttaatggataatgggttgatgattacnctttatgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="44992" stop="44110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44692" g_stop="44410" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="298"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E216303" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44692" e_stop="44410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACACTTTATGCAA</genome_strand>
        <mrna_strand>TATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCCCTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACNCTTTATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369494" ref_strand="+" ref_description="SGN-E369494 [TUS-23-I11](-)">
      <seq>aacgtgaggaatgtgatgaagaagaggtgagcactgcacgcactgatgcaaactatggatgcagttcccctgaatcatactcaaactatcattgtcaatccaaaaagagcaggacctcttctttcagggaatcctctggtagcagtactagcaattgcagtgagagaaaacgcaggaaacttaagaagatggtcaaggcattaaagggaatcgtccctggtgccagcaggatgaatactgtcaccgttcttgatgaagctgtcagatacctcaagtcacttaaggtggaagtgcagaagcttggagtcgataatctgaagacatatgcctgatatcctttgtggtataggtaatttcgcttcctttatcaccgtcacatgattatgaaccctagtcatatcttttgcttatgtgaagaagaactacttataccgtcgtattgctgagttgctgctctggagggggtaacgtaacgtagaatatggtcctttgtccagcgataggacaataagtctgctgtagtagctagctgctatatctaatttctcattctagcatatagtatgtttccactagttgcaaactctattaaggcatttgaataatttctccaatatgtgacactctttcacctattggagctgctatttgttattgttgttgtatgactttgatgatttgttttaatggataatgggttgatgattacactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="45429" stop="44115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45129" g_stop="44416" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="724"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E369494" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45129" e_stop="44416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGAGGAATATGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCAAAAAGAGCAGGACCTCTTCTTTCAGGGAATCCTCTGGTAGCAGTACTAGCAATTGCAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACCGTCACATGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACACTTT</genome_strand>
        <mrna_strand>AACGTGAGGAATGTGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCAAAAAGAGCAGGACCTCTTCTTTCAGGGAATCCTCTGGTAGCAGTACTAGCAATTGCAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACCGTCACATGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585434" ref_strand="+" ref_description="SGN-E585434 [67894]">
      <seq>gtgtgagcactgcacgcaccgatgcaaactatggatgcagttcccctgaatcatactcaaactatgattgtcaatccaaaaagagcagaacctcttctttcaggaaatcctctggcagtagtactagcaattgcagtgagagaaaacgccggaaacttaagaagatggtcaaggtattaaagggaatcatccctggtgctagcaggatgaatactgtcaccgttcttgatgaagctgtcagatacctcaagtcacttaaggtggaagtgcagaagcttggagtcgataatctgaagacatatgcttgatttcctttgtggtatgggtaactttgcttcctttatcaccatctcagtcgaagtgattatgaaccgtagtcatatcttttgcatatgtgaagaacttcttacaccgtattgctgagttgctgctctggagggggtaacgtaacgtagaatatggtcctttgtccggcgataggacaataagtttgctgtagctagctagctgctatatctaatttctcattctagcatataatatgtttccactagttgccaactctattaaggtatttgaataatttctccaatatgtgaaactttcacctattggagctgctatttgttattgttgttctatgactttgatgatttgtttaatggataatgggttgatgattacactttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="45403" stop="44115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45105" g_stop="44416" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="701"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E585434" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45105" e_stop="44416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCAAAAAGAGCAGGACCTCTTCTTTCAGGGAATCCTCTGGTAGCAGTACTAGCAATTGCAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACC--GTCA--C--A-TGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAG-TAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACACTTT</genome_strand>
        <mrna_strand>GTGTGAGCACTGCACGCACCGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATGATTGTCAATCCAAAAAGAGCAGAACCTCTTCTTTCAGGAAATCCTCTGGCAGTAGTACTAGCAATTGCAGTGAGAGAAAACGCCGGAAACTTAAGAAGATGGTCAAGGTATTAAAGGGAATCATCCCTGGTGCTAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCTTGATTTCCTTTGTGGTATGGGTAACTTTGCTTCCTTTATCACCATCTCAGTCGAAGTGATTATGAACCGTAGTCATATCTTTTGCATATGT---GAAGAACTTCTTACA-C--CGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCGGCGATAGGACAATAAGTTTGCTGTAGCTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAATATGTTTCCACTAGTTGCCAACTCTATTAAGGTATTTGAATAATTTCTCCAATATGTGA-A-ACTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTCTATGACTTTGATGATTTG-TTTAATGGATAATGGGTTGATGATTACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459934" ref_strand="+" ref_description="SGN-E459934 [cPRO-29-M16]">
      <seq>cagtgagagaaaacgccggcaacttaagaagatggtcaaggcattaaagggaatcgtccctggtgccaggaggatgaatactgtcaccgttcttgatgaagctgtcagatacctcaagtcacttaaggtggaagtgcagaagcttggagtcgataatctgaagacatatgcttgatctcctgtgtggtatgggtaacttcgcttcctttatcaccatctcagtcgaagtgattatgaaccctagtcatatcttttgcatatgtgaagaacttcttacaccgtattgctgagttactgctctggagggggtaacgtaacgtagaatatggtcctttgtctggcgataggacaataagtctgctgtagtagctagctgctatatctaatttctcattctagcatataatatgtttccactagttgcaaactctattaaggtatttgaataatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="45272" stop="44219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44972" g_stop="44519" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E459934" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44972" e_stop="44519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACC--GTCA--C--A-TGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTC</genome_strand>
        <mrna_strand>CAGTGAGAGAAAACGCCGGCAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGGAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCTTGATCTCCTGTGTGGTATGGGTAACTTCGCTTCCTTTATCACCATCTCAGTCGAAGTGATTATGAACCCTAGTCATATCTTTTGCATATGT---GAAGAACTTCTTACA-C--CGTATTGCTGAGTTACTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCTGGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAATATGTTTCCACTAGTTGCAAACTCTATTAAGGTATTTGAATAATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459945" ref_strand="+" ref_description="SGN-E459945 [cPRO-29-O16]">
      <seq>cagtgagagaaaacgccggcaacttaagaagatggtcaaggcattaaagggaatcgtccctggtgccaggaggatgaatactgtcaccgttcttgatgaagctgtcagatacctcaagtcacttaaggtggaagtgcagaagcttggagtcgataatctgaagacatatgcttgatctcctgtgtggtatgggtaacttcgcttcctttatcaccatctcagtcgaagtgattatgaaccctagtcatatcttttgcatatgtgaagaacttcttacaccgtattgctgagttactgctctggagggggtaacgtaacgtagaatatggtcctttgtctggcgataggacaataagtctgctgtagtagctagctgctatatctaatttctcattctagcatataatatgtttccactagttgcaaactctattaaggtatttgaataatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="45272" stop="44219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44972" g_stop="44519" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E459945" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44972" e_stop="44519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACC--GTCA--C--A-TGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTC</genome_strand>
        <mrna_strand>CAGTGAGAGAAAACGCCGGCAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGGAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCTTGATCTCCTGTGTGGTATGGGTAACTTCGCTTCCTTTATCACCATCTCAGTCGAAGTGATTATGAACCCTAGTCATATCTTTTGCATATGT---GAAGAACTTCTTACA-C--CGTATTGCTGAGTTACTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCTGGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAATATGTTTCCACTAGTTGCAAACTCTATTAAGGTATTTGAATAATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369495" ref_strand="+" ref_description="SGN-E369495 [TUS-23-I11]">
      <seq>ctcattaagcactgaatgtggttactgttgattggaattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaaacacttttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttgtctctctggaagaccaagcagctggtggtaatatatttgatattcctgttccatccgtctttgatacaatggcacttcctactagtttcaaatcttctgtgccctttcatggttttgaatttcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccggagccagatcatgtaccaccctgccatgacctccaaattcccatatcctgatctgaattataattcaacttgcttccacgactgcatggagagaaaaattgcaaacaatgagaatacagaagtttcttcatatctgaaggaagattcagatgatataaatgcattgctcagcttggaagaggaagaacgtgaggaatgtgatgaagaagaggtgagcactgcacgcactgatgcaaactatggatgcagttcccctgaatcatactcaaactatcattgtcaatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="46027" stop="44728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45727" g_stop="45028" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E369495" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45727" e_stop="45028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGAAGAGGAAGAATGTGAGGAATATGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCA</genome_strand>
        <mrna_strand>CTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGAAGAGGAAGAACGTGAGGAATGTGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347686" ref_strand="+" ref_description="SGN-E347686 [cTOF-26-C5]">
      <seq>ctactttcatttttaaaacatcccaagtggaaaacacttttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttgtctctctggaagaccaagcagctggtggtaatatatttgatattcctgttccatccgtctttgatacaatggcacttcctactagtttcaaatcttctgtgccctttcatggttttgaatttcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccggagccagatcatgtaccaccctgccatgacctccaaattcccatatcctgatctgaattataattcaacttgcttccacgactgcatggagagaaaaattgcaaacaatgagaatacagaagtttcttcatatctgaaggaagattcagatgatataaatgcattgctcagcttgggagaggaagaacgtgaggaatgtgatgaagaagaggtgagcactgcacgcactgatgcaaactatggatgcagttcnccctgaatcatactcaaactatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="45915" stop="44737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45615" g_stop="45037" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E347686" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45615" e_stop="45037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGAAGAGGAAGAATGTGAGGAATATGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTC-CCCTGAATCATACTCAAACTATCATT</genome_strand>
        <mrna_strand>CTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGGAGAGGAAGAACGTGAGGAATGTGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCNCCCTGAATCATACTCAAACTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608641" ref_strand="+" ref_description="SGN-E608641 [24632]">
      <seq>gtggttacagttgattggaatgtcagtgcttttttacttaacaactaatacaccttgaacgttactctcgtttgtctgtgccttctgtaactcctagctattttcatatttaaaactttccaagtggaaaacacatttctagtccagtttattggttcttttgacttagttactcatgcagaataactatcaattttcccctcaaaagccttttgtctctctggaagacaatgcagctggtggtaatatattcgatattcctgctccatcagtctttggtacaatggcactccctactggtttcaaatcttctgtgccctttcatggtttcgaaattcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccgaagccagatcatgtaccaccctgccatggcctccaagtttccatatcctgatttgaattataattcaacctgcttccaagacggcatggagagaaaaattgcgaaacaattgagaatacagaagtttcttcatatttggaaggacgattcagatgatataactgcattgctcagcttggaagaggaagaacatgaggaatatgatgaagaaaggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="46010" stop="44800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45710" g_stop="45100" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E608641" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45710" e_stop="45100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTAC-T-ACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATC-TTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGC-AAACAA-TGAGAATACAGAAGTTTCTTCATATCT-GAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGAAGAGGAAGAATGTGAGGAATATGATGAAGAAGAGGTGA</genome_strand>
        <mrna_strand>GTGGTTACAGTTGATTGGAA-TGTCAGTGCTTTTTTACTTAACAACTAATACACCTTGAACGTTACTCTCGTTTGTCTGTGCCTTCTGTAACTCCTAGCTATTTTCATATTTAAAACTTTCCAAGTGGAAAACACATTTCTAGTCCAGTTTATTGGTTCTTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTT-CCC-C----TCAAAAGCCTTTTGTCTCTCTGGAAGACAATGCAGCTGGTGGTAATATATTCGATATTCCTGCTCCATCAGTCTTTGGTACAATGGCACTCCCTACTGGTTTCAAATCTTCTGTGCCCTTTCATGGTTTCGAAATTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGAAGCCAGATCATGTACCACCCTGCCATGGCCTCCAAGTTTCCATATCCTGATTTGAATTATAATTCAACCTGCTTCCAAGACGGCATGGAGAGAAAAATTGCGAAACAATTGAGAATACAGAAGTTTCTTCATATTTGGAAGGACGATTCAGATGATATAACTGCATTGCTCAGCTTGGAAGAGGAAGAACATGAGGAATATGATGAAGAA-AGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549907" ref_strand="+" ref_description="SGN-E549907 [TUS-6-H17]">
      <seq>accttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaaacacttttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttgtctctctggaagaccaagcagctggtggtaatatatttgatattcctgttccatccgtctttgatacaatggcacttcctactagtttcaaatcttctgtgccctttcatggttttgaatttcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccggagccagatcatgtaccaccctgccatgacctccaaattcccatatcctgatctgaattataattcaacttgcttccacgactgcatggagagaaaaattgcaaacaatgagaatacagaagtttcttcatatctgaaggaagattcagatgagtataatgcattgctcagcttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="45961" stop="44839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45661" g_stop="45138" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E549907" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45661" e_stop="45138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGA</genome_strand>
        <mrna_strand>ACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGAGTATAATGCATTGCTCAGCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306863" ref_strand="+" ref_description="SGN-E306863 [cLEY-11-D24]">
      <seq>ttgaagttgggattttttgcttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttactgttgattggaattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaaacacttttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttgtctctctggaagaccaagcagctggtggtaatatatttgatattcctgttccatccgtctttgatacaatggcacttcctactagtttcaaatcttctgtgccctttcatggttttgaatttcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccggagccagatcatgtaccaccctgccatgacctccaaattcccatatcctgatctgaattataattcaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="46079" stop="44943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45779" g_stop="45243" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E306863" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45779" e_stop="45243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTG</genome_strand>
        <mrna_strand>TTGAAGTTGGGATTTTTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467509" ref_strand="+" ref_description="SGN-E467509 [cSTB-49-O1]">
      <seq>gttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtagtctgctaaagtgaaagctttggggaggttgggattgcttgcttcttgttgctcttattcagcaaagcctgtggaagttggggtttgttggttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttacagttgattggaattgtcagtgcttttttactacaactaatacaccttgaacgttactctcgtttgtctgtgccttctgtaactcttagctattctcatatttaaaactttccaagtggaaaacacatttctagtccagtttattggttcttttgacttagttactcatgcagaataactatcaattttcccctcaaaagccttttgtctctctggaagacaatgcagctggtggtaatatattcgatattcctgctccatcagtctttggtacaatggcactccctactggattcaaatcttctgtgccctttcatggtttcgaaattcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="46803" stop="45015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46503" g_stop="46471" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46470" i_stop="45890" i_length="581">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45889" g_stop="45315" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="603" r_length="570" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E467509" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46503" e_stop="46471"/>
          <exon e_start="45889" e_stop="45315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATC-TTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCG</genome_strand>
        <mrna_strand>GTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGAAAGCTTTGGGGAGGTTGGGATTGCTTGCTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTGGAAGTTGGGGTTTGTTGGTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACAGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACGTTACTCTCGTTTGTCTGTGCCTTCTGTAACTCTTAGCTATTCTCATATTTAAAACTTTCCAAGTGGAAAACACATTTCTAGTCCAGTTTATTGGTTCTTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTT-CCC-C----TCAAAAGCCTTTTGTCTCTCTGGAAGACAATGCAGCTGGTGGTAATATATTCGATATTCCTGCTCCATCAGTCTTTGGTACAATGGCACTCCCTACTGGATTCAAATCTTCTGTGCCCTTTCATGGTTTCGAAATTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470923" ref_strand="+" ref_description="SGN-E470923 [cSTB-21-E10]">
      <seq>ctcttagctatttcatatttaaaactttccaagaggaaaacacatttctagtccagtttattggttcttttgacttagttactcatgcagaataactatcaattttcccctcaaaagccttttgtctctctggaagacaatgcagctggtggtaatatattcgatattcctgctccatcagtctttggtacaatggcactccctactggtttcaaatcttctgtgccctttcatggtttcgaatttcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgatgaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="45922" stop="45015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45622" g_stop="45315" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E470923" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45622" e_stop="45315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATC-TTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCG</genome_strand>
        <mrna_strand>CTCTTAGCTA-TTTCATATTTAAAACTTTCCAAGAGGAAAACACATTTCTAGTCCAGTTTATTGGTTCTTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTT-CCC-C----TCAAAAGCCTTTTGTCTCTCTGGAAGACAATGCAGCTGGTGGTAATATATTCGATATTCCTGCTCCATCAGTCTTTGGTACAATGGCACTCCCTACTGGTTTCAAATCTTCTGTGCCCTTTCATGGTTTCGAATTTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310255" ref_strand="+" ref_description="SGN-E310255 [cTOA-1-K19]">
      <seq>agcagttaaagaagctggtgagattaaaatgcatgtggggagtgttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtagtctgctaaagtgtaagctttggggaggttgggattgcttacttcttgttgctcttattcagcaaagcctgttgaagttgggattttttgcttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttactgttgattggaattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaaacacttttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttgtctctctggaagaccaagcagctggtggtaatatatttgatattcctgttccatccgtctttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="46846" stop="45127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46546" g_stop="46471" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46470" i_stop="45890" i_length="581">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45889" g_stop="45427" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="539" r_length="463" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E310255" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46546" e_stop="46471"/>
          <exon e_start="45889" e_stop="45427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATA</genome_strand>
        <mrna_strand>AGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTTGAAGTTGGGATTTTTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354707" ref_strand="+" ref_description="SGN-E354707 [cLHT-5-B22]">
      <seq>ttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtcatctgctaaagtgaaagctttggggaggttgggattgcttacttcttgttgctcttattcagcaaagcctgttgaagttgggatttgtagcttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttactgttgattggaattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctacttccattcttaaaacttcccaagtggaaaacactgttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="46802" stop="45193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46502" g_stop="46471" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46470" i_stop="45890" i_length="581">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45889" g_stop="45493" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="429" r_length="397" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E354707" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46502" e_stop="46471"/>
          <exon e_start="45889" e_stop="45493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTG</genome_strand>
        <mrna_strand>TTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTCATCTGCTAAAGTGAAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTTGAAGTTGGGATTTGTAGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTCCATTCTTAAAACTTCCCAAGTGGAAAACACTGTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326698" ref_strand="+" ref_description="SGN-E326698 [cTOC-17-B10]">
      <seq>aaaccacgagcttctgcttcaacatttgcatctgacactcacctcttccctctctagaaaaaaaattcagaaaatctagtgaagaaacaacaaagatctttttttttttttttttcatttggtggcttggattgaagactataatatactgcactggaccaatcaacatgccgtgggcattttcttctctgagttattgtgtgaagtgtgtgcgctttgtggtattctttcgtgtgattctgtaacccatttcacttgattgcggaatcactttattttctgtcttgtgatatttcttgatactagtctatttggaggttgagaatgtacattgcgattaccttgaagagatacagagcagttaaagaagctggtgagattaaaatgcatgtggggagtgttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtagtctgctaaagtgtaagctttggggaggttgggattgcttacttcttgttgctcttattcagcaaagcctgttgaagttgggattttttgcttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttactgttgattgggattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaacacttttctagtccagtttattggatctttgacttagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="48210" stop="45242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47910" g_stop="47792" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47791" i_stop="47191" i_length="601">
            <donor d_prob="0.588" d_score="0.87"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47190" g_stop="47055" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="258" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47054" i_stop="46645" i_length="410">
            <donor d_prob="0.802" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46644" g_stop="46471" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="432" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46470" i_stop="45890" i_length="581">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45889" g_stop="45542" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="779" r_length="347" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E326698" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47910" e_stop="47792"/>
          <exon e_start="47190" e_stop="47055"/>
          <exon e_start="46644" e_stop="46471"/>
          <exon e_start="45889" e_stop="45542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCACGAGCTTCTGCTTCAACATTTGCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAATTCAGAAAATCTAGTGAAGAAACAACAAAGATC---TTTTTTTTTTTTTTCATTTGGGTATGTTCAAAGTTCTTTTTTTTTTTTTGGTTTAGATTTGTTGCTTTAGTCTTTGATTTGAGGTTGATTGTGTTGTTTCTTTTTTTGGGATTTTATCTGACTTGATTTGATGATTTGGGTATTTGTGTTCTTGGTTTAATTTTGTATGGTTAGTGAAGAAAGGAGAAAAATAGTATTTTTTTTTGAGGTTTTTAGATTCATTATGGTTTCTTGTATTGAATTGATCTTAGGTTTGTATTGATTCAATGATAGTGTGTGAATTTCATAGAGGGGTGATCTCTTCTACCGAACTTTTTTGCATCTATTGGTGATTTTTTAAGCATTTGTGATTTGCTGGGAATTTGGGTTTCGACAGTTTATTTGTATTAAGGAGTTTTACTGTAAAGAATATTAGTTTCCTTTTGAAGGAAGCATTGTAAGTTGGTGTTTATTTCTATGAGCTTTTATAATATTATGTTTTGCTATTTGTGTGCTTATTGATTATTATTGATATTTAGAGTTATGTTTTGCTATTTGTTTGCTTATTATTGTTAAAGATGAGCTATTTGTGTTCTTATTGATTATTATTGATATTCGGAGTTGTGTTTTGCTATTCTCGCAGTGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCATTTTACTTGGTGAGATAGCCTCTTGTATTTCCTAAATCTCTATCTGTCTCTTCAGCCTTAGATTTTATTTGTTTCTATGTAACTATTGCACCTTCGAGATAGAGATAAGGTCTGGGAATGTTGTTGTTGTTGTGGTGTGTAAATATTGCGGATTAACTATTCCTGTTGAGGATTTACTAAAACAGAACAGTAATGCCCAAGAGATTAAAAAAAAACTTATTGCCGAAAAGTATTTAGAAGAAGATAATTTTAGTTGGGTTGACAATAGAGAAATGGAAATTAAAGTTGTATTACTCGAGTGTTATTCAGGTGATGGATCCATTAGTTTTACAGTGGTTCGCTACTCACTTGAGAAATAAGTTTTGCTTGTATTGATGTTCTTTAATGTTTTACTCATTTGTGCTTGTTTGGTATGACAGATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACTAGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTA</genome_strand>
        <mrna_strand>AAACCACGAGCTTCTGCTTCAACATTTGCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAATTCAGAAAATCTAGTGAAGAAACAACAAAGATCTTTTTTTTTTTTTTTTTCATTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCATTTCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACTAGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTTGAAGTTGGGATTTTTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGGATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGG-AAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272394" ref_strand="+" ref_description="SGN-E272394 [cLEM-19-G4]">
      <seq>cgattaccttgaagagatacagagcagttaaagaagctggtgagattaaaatgcatgtggggagtgttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtagtctgctaaagtgtaagctttggggaggttgggattgcttacttcttgttgctcttattcagcaaagcctgttgaagttgggattttttgcttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttactgttgattggaattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaaacacttttctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="46868" stop="45271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46568" g_stop="46471" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46470" i_stop="45890" i_length="581">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45889" g_stop="45571" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="417" r_length="319" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E272394" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46568" e_stop="46471"/>
          <exon e_start="45889" e_stop="45571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAG</genome_strand>
        <mrna_strand>CGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTTGAAGTTGGGATTTTTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483993" ref_strand="+" ref_description="SGN-E483993 [cSTE-11-N19]">
      <seq>ctatctgacactcacctcctccctctctagaaaaagtttcagaaaatctagtgaagaaacaacaaagatcttttttttcatttggtggcttggattgaagactataatatactgcactggaccaatcaacatgccgtgggcattttcttctctgagttattgtgtgaagtgtgtgcgctttgtggtattctttcgcgtgattctgtaacccatttttactagattgcaagatctcttttttttcatatttcttgaaactaaagtccatttggaggttgagaatgtacattgcgattaccttgaagagatacagagcagtcaaagaagctggtgagattaaaatgcatgtggggagtgttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtagtctgctaaagtgaaagctttggggaggttgggattgcttgcttcttgttgctcttattcagcaaagcctgtggaagttggggtttgttggttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttacagttgattggaattgtcagtgcttttttactacaactaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="48181" stop="45362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47883" g_stop="47792" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47791" i_stop="47191" i_length="601">
            <donor d_prob="0.588" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47190" g_stop="47055" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="222" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47054" i_stop="46645" i_length="410">
            <donor d_prob="0.802" d_score="0.92"/>
            <acceptor a_prob="0.941" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46644" g_stop="46471" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="389" r_length="167" r_score="0.885"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46470" i_stop="45890" i_length="581">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45889" g_stop="45662" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="617" r_length="228" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E483993" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47883" e_stop="47792"/>
          <exon e_start="47190" e_stop="47055"/>
          <exon e_start="46644" e_stop="46471"/>
          <exon e_start="45889" e_stop="45662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAATTCAGAAAATCTAGTGAAGAAACAACAAAGATCTTTTTTTTTTTTTTCATTTGGGTATGTTCAAAGTTCTTTTTTTTTTTTTGGTTTAGATTTGTTGCTTTAGTCTTTGATTTGAGGTTGATTGTGTTGTTTCTTTTTTTGGGATTTTATCTGACTTGATTTGATGATTTGGGTATTTGTGTTCTTGGTTTAATTTTGTATGGTTAGTGAAGAAAGGAGAAAAATAGTATTTTTTTTTGAGGTTTTTAGATTCATTATGGTTTCTTGTATTGAATTGATCTTAGGTTTGTATTGATTCAATGATAGTGTGTGAATTTCATAGAGGGGTGATCTCTTCTACCGAACTTTTTTGCATCTATTGGTGATTTTTTAAGCATTTGTGATTTGCTGGGAATTTGGGTTTCGACAGTTTATTTGTATTAAGGAGTTTTACTGTAAAGAATATTAGTTTCCTTTTGAAGGAAGCATTGTAAGTTGGTGTTTATTTCTATGAGCTTTTATAATATTATGTTTTGCTATTTGTGTGCTTATTGATTATTATTGATATTTAGAGTTATGTTTTGCTATTTGTTTGCTTATTATTGTTAAAGATGAGCTATTTGTGTTCTTATTGATTATTATTGATATTCGGAGTTGTGTTTTGCTATTCTCGCAGTGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCA-TTTTACTTGGTGAGATAGCCTCTTGTATTTCCTAAATCTCTATCTGTCTCTTCAGCCTTAGATTTTATTTGTTTCTATGTAACTATTGCACCTTCGAGATAGAGATAAGGTCTGGGAATGTTGTTGTTGTTGTGGTGTGTAAATATTGCGGATTAACTATTCCTGTTGAGGATTTACTAAAACAGAACAGTAATGCCCAAGAGATTAAAAAAAAACTTATTGCCGAAAAGTATTTAGAAGAAGATAATTTTAGTTGGGTTGACAATAGAGAAATGGAAATTAAAGTTGTATTACTCGAGTGTTATTCAGGTGATGGATCCATTAGTTTTACAGTGGTTCGCTACTCACTTGAGAAATAAGTTTTGCTTGTATTGATGTTCTTTAATGTTTTACTCATTTGTGCTTGTTTGGTATGACAGATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACT--AGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATAC</genome_strand>
        <mrna_strand>CTATCTGACACTCACCTCCTCCCTCTCTAG-AAAAAGTTTCAGAAAATCTAGTGAAGAAACAACAAAGATC------TTTTTTTTCATTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGCGTGATTCTGTAACCCATTTTTACTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGC--AA-GA-TCT-CTTT-T-T-TT-TCATATTTCTTGAAACTAAAGTCCATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTCAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGAAAGCTTTGGGGAGGTTGGGATTGCTTGCTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTGGAAGTTGGGGTTTGTTGGTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACAGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245364" ref_strand="+" ref_description="SGN-E245364 [cLEF-53-B12]">
      <seq>ttgcatctgacactcacctcttccctctctagaaaaaaaaggcagaaaatctagtgaggaaacaacaaagatctttttttttttttttcatttggtggcttggattgaagactataatatactgcactggaccaatcaacatgccgtgggcattttcttctctgagttattgtgtgaagtgtgtgcgctttgtggtattctttcgtgtgattctgtaacccatttcacttgattgcggaatcactttattttctgtcttgtgatatttcttgatactagtctatttggaggttgagaatgtacattgcgattaccttgaagagatacagagcagttaaagaagctggtgagattaaaatgcatgtggggagtgttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="48185" stop="45558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47885" g_stop="47792" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47791" i_stop="47191" i_length="601">
            <donor d_prob="0.588" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47190" g_stop="47055" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="231" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47054" i_stop="46645" i_length="410">
            <donor d_prob="0.802" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46644" g_stop="46471" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="405" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46470" i_stop="45890" i_length="581">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45889" g_stop="45858" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="437" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E245364" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47885" e_stop="47792"/>
          <exon e_start="47190" e_stop="47055"/>
          <exon e_start="46644" e_stop="46471"/>
          <exon e_start="45889" e_stop="45858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAATTCAGAAAATCTAGTGAAGAAACAACAAAGATCTTTTT-TTTTTTTTTCATTTGGGTATGTTCAAAGTTCTTTTTTTTTTTTTGGTTTAGATTTGTTGCTTTAGTCTTTGATTTGAGGTTGATTGTGTTGTTTCTTTTTTTGGGATTTTATCTGACTTGATTTGATGATTTGGGTATTTGTGTTCTTGGTTTAATTTTGTATGGTTAGTGAAGAAAGGAGAAAAATAGTATTTTTTTTTGAGGTTTTTAGATTCATTATGGTTTCTTGTATTGAATTGATCTTAGGTTTGTATTGATTCAATGATAGTGTGTGAATTTCATAGAGGGGTGATCTCTTCTACCGAACTTTTTTGCATCTATTGGTGATTTTTTAAGCATTTGTGATTTGCTGGGAATTTGGGTTTCGACAGTTTATTTGTATTAAGGAGTTTTACTGTAAAGAATATTAGTTTCCTTTTGAAGGAAGCATTGTAAGTTGGTGTTTATTTCTATGAGCTTTTATAATATTATGTTTTGCTATTTGTGTGCTTATTGATTATTATTGATATTTAGAGTTATGTTTTGCTATTTGTTTGCTTATTATTGTTAAAGATGAGCTATTTGTGTTCTTATTGATTATTATTGATATTCGGAGTTGTGTTTTGCTATTCTCGCAGTGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCATTTTACTTGGTGAGATAGCCTCTTGTATTTCCTAAATCTCTATCTGTCTCTTCAGCCTTAGATTTTATTTGTTTCTATGTAACTATTGCACCTTCGAGATAGAGATAAGGTCTGGGAATGTTGTTGTTGTTGTGGTGTGTAAATATTGCGGATTAACTATTCCTGTTGAGGATTTACTAAAACAGAACAGTAATGCCCAAGAGATTAAAAAAAAACTTATTGCCGAAAAGTATTTAGAAGAAGATAATTTTAGTTGGGTTGACAATAGAGAAATGGAAATTAAAGTTGTATTACTCGAGTGTTATTCAGGTGATGGATCCATTAGTTTTACAGTGGTTCGCTACTCACTTGAGAAATAAGTTTTGCTTGTATTGATGTTCTTTAATGTTTTACTCATTTGTGCTTGTTTGGTATGACAGATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACTAGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGT</genome_strand>
        <mrna_strand>TTGCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAAGGCAGAAAATCTAGTGAGGAAACAACAAAGATCTTTTTTTTTTTTTTTCATTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCATTTCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACTAGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="51592" stop="50548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51292" g_stop="50846" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51292" e_stop="50846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGAGTAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTAGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTGG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="51593" stop="50698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51293" g_stop="50972" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51293" e_stop="50972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGAGTAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="51593" stop="50698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51293" g_stop="50988" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51293" e_stop="50988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGAGTAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTTTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355949" ref_strand="+" ref_description="SGN-E355949 [cLHT-21-N1]">
      <seq>tcaaacttaagggactactatagaaaatatttttctcaactttctctacgccggagaatgcacaattagaccaccaaattccgggctgtgttcgctgtgcgtcaattggagattgcacaattaaattgcgggggccgtgttcgccgtggagtagaggtcggggttactgtggtactctttcgcctgattctgtcatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctgaaaaatctgaagcaattgacgccttttatcaaagaagcatttcagcaaacattactcgtagccaaattcctctgtggtattcatgtggtcaacagctatatctgcaccttagctctcactcaaggtccaagcatgcttccaacgtttaatctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54108" stop="55286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54408" g_stop="54783" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54898" g_stop="54986" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="465" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E355949" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54408" e_stop="54783"/>
          <exon e_start="54898" e_stop="54986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTTAAGGGACTATTGTAGAAAATATTTTTCTCAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCA</genome_strand>
        <mrna_strand>TCAAACTTAAGGGACTACTATAGAAAATATTTTTCTCAACTTTCTCTACGCCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATTGGAGATTGCACAATTAAATTGCGGGGGCCGTGTTCGCCGTGGAGTAGAGGTCGGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAATCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471725" ref_strand="+" ref_description="SGN-E471725 [cSTB-25-C16]">
      <seq>atttttctcaactttctctacaccggcgaatgcacaactagaccaccagattccgggccgtgttcgctgtgcatcaatcggagaatgcacaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgtgctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctggaaaatctgaagcaactgacgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54136" stop="54992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54436" g_stop="54692" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E471725" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54436" e_stop="54692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTCAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTT</genome_strand>
        <mrna_strand>ATTTTTCTCAACTTTCTCTACACCGGCGAATGCACAACTAGACCACCAGATTCCGGGCCGTGTTCGCTGTGCATCAATCGGAGAATGCACAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTGCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGGAAAATCTGAAGCAACTGACGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478977" ref_strand="+" ref_description="SGN-E478977 [cSTD-7-P20]">
      <seq>tttttctcaactttctctacaccggagaatgcacaactagaccaccagattccgggccgtgttcgctgtgcatcaatcggagaatgcacaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgttctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgagtctggaaaatctgaagcaactgacgccttttatcaaagaagcatttcagcaaacactactcgtagccaaattcctctgtggtattcatgtgaccaacagctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54137" stop="55066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54437" g_stop="54766" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E478977" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54437" e_stop="54766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATA</genome_strand>
        <mrna_strand>TTTTTCTCAACTTTCTCTACACCGGAGAATGCACAACTAGACCACCAGATTCCGGGCCGTGTTCGCTGTGCATCAATCGGAGAATGCACAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTTCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGAGTCTGGAAAATCTGAAGCAACTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACACTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGACCAACAGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249377" ref_strand="+" ref_description="SGN-E249377 [cLEF-50-B1]">
      <seq>caactttctctacaccggagaatgcacaattagaccaccaaattccgggctgtgttcgctgtgcgtcaatcggagattgcacaattaaatagcgggggccgtgttcgccgtcgagtagaggtcggggttactgtggtactctttcgcctgattctgtcatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctgaaaaatctgaagcaattgacgccttttatcaaagaagcatttcagcaaacattactcgtagccaaattcctctgtggtattcatgtggtcaacagctatatctgcaccttagctctcactcaaggtccaagcatgcttccaacgtttagtctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgtagtgctagtgcgtagccctgagaacccgagaaaaattgtgatcaaaagaatcatgggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54144" stop="55358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54444" g_stop="54783" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54898" g_stop="55058" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="501" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E249377" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54444" e_stop="54783"/>
          <exon e_start="54898" e_stop="55058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCAT</genome_strand>
        <mrna_strand>CAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249378" ref_strand="+" ref_description="SGN-E249378 [cLEF-50-B3]">
      <seq>tacaccggataatgcacaattagaccaccagatttcttggtgagttttctgggcgtcaatcggagattgcacaattaaatagcgggggccgtgttcgccgtcaagtacaggtcagagactacttcatcctctttcgcctgattctgtcatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctgaaaaatctgaagcaattgacgccttttatcaaagaagcatttcagcaaacattactcgtagccaaattcctctgtggtattcatgtggtcaacagctatatctgcaccttaactctcactcaaggtccaagcatgcttccaacgtttagtctgactggagatcttgttttggctgaaaggctatcaactccgtttgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54154" stop="55281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54454" g_stop="54783" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114">
            <donor d_prob="0.819" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54898" g_stop="54981" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="414" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E249378" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54454" e_stop="54783"/>
          <exon e_start="54898" e_stop="54981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTG-GGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAA</genome_strand>
        <mrna_strand>TACACCGGATAATGCACAATTAGACCACCAGATTTCTTGGTGAGTTTTCTGGGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCAAGTACAGGTCAGAGACTACT-TCATCCTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAACTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCCGTTTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608616" ref_strand="+" ref_description="SGN-E608616 [24607]">
      <seq>aactagaccaccagattccgggccgtgttcgctgtgcatcaatcggagaatgcacaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgtgctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctggaaaatctgaagcaactgacgccttttatcaaagaagcatttcagcaaacactattcgtagccaaattcctctgtggtattcatgtcaccaacagctacatctgcaccttcgctctcactcaaggtccaagcatgcttccaacgtttaatctgactggagatcttgttttggctgaaaggctatcaactcggtttgaaaaaatgcaacgtggagatgtggtgctagtgcgtaagcctgagaacccgagaaaaattgtgatcaaaagactcatgggtatgggtggtgatactgttagatatgttgtggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54171" stop="55392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54471" g_stop="54783" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114">
            <donor d_prob="0.819" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54898" g_stop="55092" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="507" r_length="195" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E608616" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54471" e_stop="54783"/>
          <exon e_start="54898" e_stop="55092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCAT</genome_strand>
        <mrna_strand>AACTAGACCACCAGATTCCGGGCCGTGTTCGCTGTGCATCAATCGGAGAATGCACAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTGCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGGAAAATCTGAAGCAACTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACACTATTCGTAGCCAAATTCCTCTGTGGTATTCATGTCACCAACAGCTACATCTGCACCTTCGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAATCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAAAAAATGCAACGTGGAGATGTGGTGCTAGTGCGTAAGCCTGAGAACCCGAGAAAAATTGTGATCAAAAGACTCATGGGTATGGGTGGTGATACTGTTAGATATGTTGTGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703433" ref_strand="+" ref_description="SGN-E703433 [FA21BH11]">
      <seq>gttcgctgtgcgtcaatcggagattgcacaattaaatagcgggggccgtgttcgccgtcgagtagaggtctgggttactgtggtactctttcgcctgattctgtcatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctgaaaaatctgaagcaattgacgccttttatcaaagaagcatttcagcaaacattactcgtagccaaattcctctgtggtattcatgtggtcaacagctatatctgcaccttagctctcactcaaggtccaagcatgcttccaacgtttagtctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgtagtgctagtgcgtagccctgagaacccgagaaaaattgtgatcaaaagaatcatgggcatgggtagtgatactgttagatatgttgtggatcatgcaaataatggaatagaacatactattgtggtaccagatggacatgtttggattgaaggggataacaaattcaataccaacgattcgaggaactttggacctgtaccttatggacttgtacagggcagagtcttttggcttgtatggcctcctgaaaattttggatcagtaggaagagaagtacagtaaatcaacctttcaagatttggagtatgcttgtagagtattctctcacaagcctggattttaaacaatttactgaagatggcaactggtgggttgctttactactttgttcgaggtggaagacaggacgcaagagctgttaaatatattcggttaatgtatttctctagctccaaagggtgcacgggtttgcataattttgctctgaagtgccactgctaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54197" stop="57508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54497" g_stop="54783" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54898" g_stop="55122" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="512" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55123" i_stop="55296" i_length="174">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55297" g_stop="55407" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="623" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55408" i_stop="56130" i_length="723">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56131" g_stop="56192" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="685" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56193" i_stop="56999" i_length="807">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57000" g_stop="57208" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="894" r_length="209" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E703433" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54497" e_stop="54783"/>
          <exon e_start="54898" e_stop="55122"/>
          <exon e_start="55297" e_stop="55407"/>
          <exon e_start="56131" e_stop="56192"/>
          <exon e_start="57000" e_stop="57208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGTAATTCAGAATTGATCAAATACCTTCATTTACAACTGATTTTCTCCTCTTTTGCAGTTGGTAAATGTTTGTAGTTTACTTTCAGGAGCTAATGTAGTTGGGTTTTTGCTGCCCTATTTTCTTTGCGCCGCTCCACTTTTGTTTCTTAGGTGAATATGCTTTGAATGTGAACAGGTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTACAGGGCAGAGTCTTTTGGCTTGTCAGTAATTCTTCTCTATTTTAATTTTTAGCTAATTTGCCAAACTGTTAGGACTTTATTATATTTTGGAAATATTTTTTGCTTAATTTCGTGGAACTGTTTTCGAAGGTATGTTTAACGCCATCATATTGCTGTCCTTATGCATGCCATTTGATGATTATGTTTAAGACAATTTTTAATTTTTTTAAGTTTGAATTGGTAAGTCAGATTTTTATCTTTGTATTGTTTGATAAGATTAAAAGAATAGCTAAGTCTCCTGTAGGACTTGCCAGAAGGAACACCTGCCATAGGAATCATGTCTAGCTTGTGCATAAGCAGCATTTTCAGGGGATTCTATTGTGCTAAATAGTGTGTGCGCTGATTTTATTGGTACTGTTTGGTACAATTTGGTTAGTTAGGGGCTTAAGGCTAAAATCTCTACATATATGCATAAGCACACCTAATCTTGTGAACGTGTTTAATACTTCAGGTTCTTGTAGACTAGTTGATACTTGTGAAATTCATCCAATATGTTTTATGTTTCTGACTTGAATTCATAAACCAACAGATATGTCGCTAGCTATTTCTGGAGAGTCATCTTCAATTAGTAAACTAGGAACGTTGTAAAACAAAATGTGTAACCTTTTTGATCTTTTTTCCGTATTTGAAGTACTTGTTTGTGCAGCATTCTATCTTTAATTTTGCTGCGTTGTAGAAATCTTAAAGTTCTGATGTTGTCATTAGGTATGGCCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAGGTATGCTTGTTTAGAATTTCATGCTTAATATGTTTTTGCTAATTAGGAGGTTGGATCATTTGTTATGAACTTGTGCCATTGCTTTGCAATGTTGTCCTCATTTCACTTTGATATTTGCCTTCATTTCGTCACTGATTTGATTCCTGTGTTCTATATTTTTTTCTCTTTATTTTTCCAAATTAGTCTTAGTGAACTATTTATGCTACTGTCAATTTTTTCAAGAACTTATGAGGGAGGAAGTTATGTGAACTTTATATGTGTTAAACTTCAAGTTCTCACTTAATGAGAGGTAGCAAAATGTTTAGGAATCAAATATTGTGTTTAGGTTTCTTCCTAGTGTTTTTCTTTCTAAAAGTTTTCTGTTTTCTCCCCTGGCTAATTCAAATTTCCTCCTAGTGGTTTTCCTTGTAGAAAATTTGCACATTTTCAGACTAAGCTTCTTGTTTGCTTCATGTTTTATCTAGCGTATTACGTCCAAATGCTAGTTGTATATTTTTGGTTGTGACTGGAAAAATGTGTGCTTGGTAATGTATGACAAGACTATGGCTCGTAATAATGTATCCTCTGCATAATATTCTGATTTTTGTCATGTTTAGTTCTATAAGAATAATATAATGCTGGCATGTGATGAATTTAAATGTAGAAACCTGATAGGTGAGAATTTATATAGCTGATCCCAACTTGTATGAGAAGGTATATATGTGTTGTTGCTTCCCACAACAATGACATATGATTTTGTTGGACCTTGTGATAAACCTGTTTTCCTTGTTGGTAGCTAAAACCGGTTAATGGACTTTACCTTGGCAGATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTGAAGATGGCAACTGGTGGGTTGCTTTACTACTTTGTTCGAGGTGGAAGACAGGACGCAAGAGCTGTTAAATATATTCGGTTAATGTATTTCTCTAGCTCCAAAGGGTGCACGGTTTTGCATAA-TTTGCTCTTGAAGTGCCACTGCTAATGCA</genome_strand>
        <mrna_strand>GTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTG..............................................................................................................................................................................GTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTACAGGGCAGAGTCTTTTGGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTGAAGATGGCAACTGGTGGGTTGCTTTACTACTTTGTTCGAGGTGGAAGACAGGACGCAAGAGCTGTTAAATATATTCGGTTAATGTATTTCTCTAGCTCCAAAGGGTGCACGGGTTTGCATAATTTTGCTC-TGAAGTGCCACTGCTAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441061" ref_strand="+" ref_description="SGN-E441061 [cSTA-29-E23]">
      <seq>gttcgctgtgcatcaatcggagaatgcaccaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgttctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgagtctggaaaatctgaagcaactgacgccttttatcaaagaagcatttcagcaaacactactcgtagccaaattcctctgtggtattcatgtcaccaacagctaccatctgcaccttcgctctcactcaaggtccaagcctgccttccaacgtttaatctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgtggtgctagtgcgtagccctgagaacccgagaaaaattgtgatcaaaagactcatgggtatgggtggtgatactgttagatatgttgtggatcatgcaaataatggaatagaacatactattgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54197" stop="55424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54497" g_stop="54783" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114">
            <donor d_prob="0.819" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54898" g_stop="55124" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="516" r_length="228" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E441061" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54497" e_stop="54783"/>
          <exon e_start="54898" e_stop="55124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCTGTGCGTCAATCGGAGATTGCA-CAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTA-TATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATG-CTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGT</genome_strand>
        <mrna_strand>GTTCGCTGTGCATCAATCGGAGAATGCACCAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTTCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGAGTCTGGAAAATCTGAAGCAACTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACACTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTCACCAACAGCTACCATCTGCACCTTCGCTCTC..................................................................................................................ACTCAAGGTCCAAGCCTGCCTTCCAACGTTTAATCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTGGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGACTCATGGGTATGGGTGGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469502" ref_strand="+" ref_description="SGN-E469502 [cSTB-12-A11]">
      <seq>gttcgctgtgcatcaatcggagaatgcacaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgttctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgagtctggaaaatctgaagcaactgacgccttttatcaaagaagcatttcagcaaacactactcgtagccaaattcctctgtggtattcatgtcaccaacagctacatctgcaccttcgctctcactcaaggtccaagcatgcttccaacgtttaatctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54197" stop="55298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54497" g_stop="54783" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114">
            <donor d_prob="0.819" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54898" g_stop="54998" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="387" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E469502" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54497" e_stop="54783"/>
          <exon e_start="54898" e_stop="54998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGT</genome_strand>
        <mrna_strand>GTTCGCTGTGCATCAATCGGAGAATGCACAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTTCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGAGTCTGGAAAATCTGAAGCAACTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACACTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTCACCAACAGCTACATCTGCACCTTCGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAATCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206469" ref_strand="+" ref_description="SGN-E206469 [cLEC-23-K10]">
      <seq>tcgctgtgcgtcaatcggagattgcacaattaaatagcgggggccgtgtgggccgtccagtagaggtcggggatactgtggtactctttcgcctgattctgtcatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctgaaaaatctgaagcaattgacgccttttatcaaagaagcatttcagcaaacattactcgtagccaaattcctctgtggtattcatgtggtcaacagctatatctgcaccttagctctcactcaaggtccaagcatgcttccaacgtttagtctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgtagtgctagtgcgtagccctgataacccgagaaaaattgtgatcaaaagaatcatgggcatgggtagtgatactgttagatatgttgtggatcatgcaaataatggaatagaacatactattgtggtaccagatggacatgtttggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54199" stop="55622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54499" g_stop="54783" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54898" g_stop="55122" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="510" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55123" i_stop="55296" i_length="174">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55297" g_stop="55322" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="536" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E206469" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54499" e_stop="54783"/>
          <exon e_start="54898" e_stop="55122"/>
          <exon e_start="55297" e_stop="55322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGTAATTCAGAATTGATCAAATACCTTCATTTACAACTGATTTTCTCCTCTTTTGCAGTTGGTAAATGTTTGTAGTTTACTTTCAGGAGCTAATGTAGTTGGGTTTTTGCTGCCCTATTTTCTTTGCGCCGCTCCACTTTTGTTTCTTAGGTGAATATGCTTTGAATGTGAACAGGTACCAGATGGACATGTTTGGATTGA</genome_strand>
        <mrna_strand>TCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTGGGCCGTCCAGTAGAGGTCGGGGATACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGATAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTG..............................................................................................................................................................................GTACCAGATGGACATGTTTGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466586" ref_strand="+" ref_description="SGN-E466586 [cPRO-24-P2]">
      <seq>catcaatcggagaatgcacaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgtgctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctggaaaatctgaagcaactgacgccttttatcaaagaagcatttcagcaaacactattcgtagccaaattcctctgtggtattcatgtcaccaacagctacatctgcaccttcgctctcactcaaggtccaagcatgcttccaacgtttaatctgactggagatcttgttttggctgaaaggctatcaactcggtttgaaaaaatgcaacgtggagatgtggtgctagtgcgtagccctgagaacccgagaaaaattgtgatcaaaagactcatgggtatgggtggtgatactgttagatatgttgtggatcatgctaataatggaatagaacatactattgtggtaccagatggacatgtttggattgaaggnngatacaaattttataccaacgattcgaggaactttggacctgtaccttatggacttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54207" stop="55687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54507" g_stop="54783" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114">
            <donor d_prob="0.819" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54898" g_stop="55122" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="501" r_length="225" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55123" i_stop="55296" i_length="174">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55297" g_stop="55387" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="592" r_length="91" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E466586" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54507" e_stop="54783"/>
          <exon e_start="54898" e_stop="55122"/>
          <exon e_start="55297" e_stop="55387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGTAATTCAGAATTGATCAAATACCTTCATTTACAACTGATTTTCTCCTCTTTTGCAGTTGGTAAATGTTTGTAGTTTACTTTCAGGAGCTAATGTAGTTGGGTTTTTGCTGCCCTATTTTCTTTGCGCCGCTCCACTTTTGTTTCTTAGGTGAATATGCTTTGAATGTGAACAGGTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTAC</genome_strand>
        <mrna_strand>CATCAATCGGAGAATGCACAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTGCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGGAAAATCTGAAGCAACTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACACTATTCGTAGCCAAATTCCTCTGTGGTATTCATGTCACCAACAGCTACATCTGCACCTTCGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAATCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAAAAAATGCAACGTGGAGATGTGGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGACTCATGGGTATGGGTGGTGATACTGTTAGATATGTTGTGGATCATGCTAATAATGGAATAGAACATACTATTGTG..............................................................................................................................................................................GTACCAGATGGACATGTTTGGATTGAAGGNNGATACAAATTTTATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201235" ref_strand="+" ref_description="SGN-E201235 [cLEC-10-G14]">
      <seq>accttagctctcactcaaggtccaagcatgcttccaacgtttagtctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgtagtgctagtgcgtagccctgagaacccgagaaaaattgtgatcaaaagaatcatgggcatgggtagtgatactgttagatatgttgtggatcatgcaaataatggaatagaacatactattgtggtaccagatggacatgtttggattgaaggggataacaaattcaataccaacgattcgaggaactttggacctgtaccttatggacttgtacagggcagagtcttttggcttgtatggcctcctgaaaattttggatcagtaggaagagaagtacagtaaatcaacctttcaagatttggagtatgcttgtagagtattctctcacaagcctggattttaaacaatttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="54589" stop="57357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54772" g_stop="54783" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114">
            <donor d_prob="0.819" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54898" g_stop="55122" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="237" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55123" i_stop="55296" i_length="174">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55297" g_stop="55407" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="348" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55408" i_stop="56130" i_length="723">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56131" g_stop="56192" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="410" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56193" i_stop="56999" i_length="807">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57000" g_stop="57057" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="468" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E201235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54772" e_stop="54783"/>
          <exon e_start="54898" e_stop="55122"/>
          <exon e_start="55297" e_stop="55407"/>
          <exon e_start="56131" e_stop="56192"/>
          <exon e_start="57000" e_stop="57057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGTAATTCAGAATTGATCAAATACCTTCATTTACAACTGATTTTCTCCTCTTTTGCAGTTGGTAAATGTTTGTAGTTTACTTTCAGGAGCTAATGTAGTTGGGTTTTTGCTGCCCTATTTTCTTTGCGCCGCTCCACTTTTGTTTCTTAGGTGAATATGCTTTGAATGTGAACAGGTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTACAGGGCAGAGTCTTTTGGCTTGTCAGTAATTCTTCTCTATTTTAATTTTTAGCTAATTTGCCAAACTGTTAGGACTTTATTATATTTTGGAAATATTTTTTGCTTAATTTCGTGGAACTGTTTTCGAAGGTATGTTTAACGCCATCATATTGCTGTCCTTATGCATGCCATTTGATGATTATGTTTAAGACAATTTTTAATTTTTTTAAGTTTGAATTGGTAAGTCAGATTTTTATCTTTGTATTGTTTGATAAGATTAAAAGAATAGCTAAGTCTCCTGTAGGACTTGCCAGAAGGAACACCTGCCATAGGAATCATGTCTAGCTTGTGCATAAGCAGCATTTTCAGGGGATTCTATTGTGCTAAATAGTGTGTGCGCTGATTTTATTGGTACTGTTTGGTACAATTTGGTTAGTTAGGGGCTTAAGGCTAAAATCTCTACATATATGCATAAGCACACCTAATCTTGTGAACGTGTTTAATACTTCAGGTTCTTGTAGACTAGTTGATACTTGTGAAATTCATCCAATATGTTTTATGTTTCTGACTTGAATTCATAAACCAACAGATATGTCGCTAGCTATTTCTGGAGAGTCATCTTCAATTAGTAAACTAGGAACGTTGTAAAACAAAATGTGTAACCTTTTTGATCTTTTTTCCGTATTTGAAGTACTTGTTTGTGCAGCATTCTATCTTTAATTTTGCTGCGTTGTAGAAATCTTAAAGTTCTGATGTTGTCATTAGGTATGGCCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAGGTATGCTTGTTTAGAATTTCATGCTTAATATGTTTTTGCTAATTAGGAGGTTGGATCATTTGTTATGAACTTGTGCCATTGCTTTGCAATGTTGTCCTCATTTCACTTTGATATTTGCCTTCATTTCGTCACTGATTTGATTCCTGTGTTCTATATTTTTTTCTCTTTATTTTTCCAAATTAGTCTTAGTGAACTATTTATGCTACTGTCAATTTTTTCAAGAACTTATGAGGGAGGAAGTTATGTGAACTTTATATGTGTTAAACTTCAAGTTCTCACTTAATGAGAGGTAGCAAAATGTTTAGGAATCAAATATTGTGTTTAGGTTTCTTCCTAGTGTTTTTCTTTCTAAAAGTTTTCTGTTTTCTCCCCTGGCTAATTCAAATTTCCTCCTAGTGGTTTTCCTTGTAGAAAATTTGCACATTTTCAGACTAAGCTTCTTGTTTGCTTCATGTTTTATCTAGCGTATTACGTCCAAATGCTAGTTGTATATTTTTGGTTGTGACTGGAAAAATGTGTGCTTGGTAATGTATGACAAGACTATGGCTCGTAATAATGTATCCTCTGCATAATATTCTGATTTTTGTCATGTTTAGTTCTATAAGAATAATATAATGCTGGCATGTGATGAATTTAAATGTAGAAACCTGATAGGTGAGAATTTATATAGCTGATCCCAACTTGTATGAGAAGGTATATATGTGTTGTTGCTTCCCACAACAATGACATATGATTTTGTTGGACCTTGTGATAAACCTGTTTTCCTTGTTGGTAGCTAAAACCGGTTAATGGACTTTACCTTGGCAGATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTG</genome_strand>
        <mrna_strand>ACCTTAGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTG..............................................................................................................................................................................GTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTACAGGGCAGAGTCTTTTGGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354127" ref_strand="+" ref_description="SGN-E354127 [cTOS-16-B18]">
      <seq>cctcctgaaaattttggatcagtaggaagagaagtacagtaaatcaacctttcaagatttggagtatgcttgtagagtattctctcacaagcctggattttaaacaatttactgaagatggcaactggtgggttgctttactacttggttcgaggtggaagacaggacgcaagagctgttaaatatattcggttaatgtatttctctaactccaaagggtgcacggttttgcataatttgctcttgaagtgccactgctaatgcattagctcgaaggcttctttttctattttactttgtcgttgttcttctttcaaaagagtcgtttggactaatgggatttggcagtcacttctcgtataaacttgagcctttgtagtcagtgttaccgctgggaagttacatgtacctggtctctaaggtgcaggcaagctttgccaaaacacagcactacattttaattctcatttttctgatagttacatgttcctttaaataatacagtagtaaattttttaattttaattaactgatgtatatatccaaaagctaggagttaagctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="55837" stop="57807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56137" g_stop="56192" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56193" i_stop="56999" i_length="807">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57000" g_stop="57507" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="564" r_length="508" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="575"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E354127" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56137" e_stop="56192"/>
          <exon e_start="57000" e_stop="57507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAGGTATGCTTGTTTAGAATTTCATGCTTAATATGTTTTTGCTAATTAGGAGGTTGGATCATTTGTTATGAACTTGTGCCATTGCTTTGCAATGTTGTCCTCATTTCACTTTGATATTTGCCTTCATTTCGTCACTGATTTGATTCCTGTGTTCTATATTTTTTTCTCTTTATTTTTCCAAATTAGTCTTAGTGAACTATTTATGCTACTGTCAATTTTTTCAAGAACTTATGAGGGAGGAAGTTATGTGAACTTTATATGTGTTAAACTTCAAGTTCTCACTTAATGAGAGGTAGCAAAATGTTTAGGAATCAAATATTGTGTTTAGGTTTCTTCCTAGTGTTTTTCTTTCTAAAAGTTTTCTGTTTTCTCCCCTGGCTAATTCAAATTTCCTCCTAGTGGTTTTCCTTGTAGAAAATTTGCACATTTTCAGACTAAGCTTCTTGTTTGCTTCATGTTTTATCTAGCGTATTACGTCCAAATGCTAGTTGTATATTTTTGGTTGTGACTGGAAAAATGTGTGCTTGGTAATGTATGACAAGACTATGGCTCGTAATAATGTATCCTCTGCATAATATTCTGATTTTTGTCATGTTTAGTTCTATAAGAATAATATAATGCTGGCATGTGATGAATTTAAATGTAGAAACCTGATAGGTGAGAATTTATATAGCTGATCCCAACTTGTATGAGAAGGTATATATGTGTTGTTGCTTCCCACAACAATGACATATGATTTTGTTGGACCTTGTGATAAACCTGTTTTCCTTGTTGGTAGCTAAAACCGGTTAATGGACTTTACCTTGGCAGATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTGAAGATGGCAACTGGTGGGTTGCTTTACTACTTTGTTCGAGGTGGAAGACAGGACGCAAGAGCTGTTAAATATATTCGGTTAATGTATTTCTCTAGCTCCAAAGGGTGCACGGTTTTGCATAATTTGCTCTTGAAGTGCCACTGCTAATGCATTAGCTCGAAGGCTTCTTTTTCTATTTTACTTTGTCGTTGTTCTTCTTTCAAAAGAGTCGTTTGGACTAATGGGATTTGGCAGTCACTTCTCGTATAAACTTGAGCCTTTGTAGTCAGTGTTACCGCTGGGAAGTTACATGTACCTGGTCTCTAAGGTGCAGGCAAGCTTTGCCAAAACACAGCACTACATTTTAATTCTCATTTTTCTGATAGTTACATGTTCCTTTAAATAATACAGTAGTAAATTTTTTAATTTTAATTAACTGATGTATATATCCAAAAGCTAGGAGTTAAGCTA</genome_strand>
        <mrna_strand>CCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTGAAGATGGCAACTGGTGGGTTGCTTTACTACTTGGTTCGAGGTGGAAGACAGGACGCAAGAGCTGTTAAATATATTCGGTTAATGTATTTCTCTAACTCCAAAGGGTGCACGGTTTTGCATAATTTGCTCTTGAAGTGCCACTGCTAATGCATTAGCTCGAAGGCTTCTTTTTCTATTTTACTTTGTCGTTGTTCTTCTTTCAAAAGAGTCGTTTGGACTAATGGGATTTGGCAGTCACTTCTCGTATAAACTTGAGCCTTTGTAGTCAGTGTTACCGCTGGGAAGTTACATGTACCTGGTCTCTAAGGTGCAGGCAAGCTTTGCCAAAACACAGCACTACATTTTAATTCTCATTTTTCTGATAGTTACATGTTCCTTTAAATAATACAGTAGTAAATTTTTTAATTTTAATTAACTGATGTATATATCCAAAAGCTAGGAGTTAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227564" ref_strand="+" ref_description="SGN-E227564 [cLEL-30-K20](-)">
      <seq>tcagcatttgtgctatgggtgatgagagaactaccacctccacttgtcactttcagtcaacaggagtcgaggacaatagcttttataaatgacagttcagcgacagtacagcctcagcgatggacagctgctgcaagtgtgcaaaatcaggtctcaagggcgagccccatatgatcaccgtgatggaatttgtaaattgattggtgattttcagctagagtgaaggactgacaatactaaaaatgaaagaacttctcagttgagtggtcggtgttgtggttgagtgatcgaagaaagctcaactcaacggataaaaaataccccttgcaactaaggtggttgctcagggtacacatgcctgcataacttggattcttgtacatagcaatgaactttctaaattttacagattctttttcgttgatataatgaggttttagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="59007" stop="57497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58707" g_stop="58558" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58557" i_stop="58092" i_length="466">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58091" g_stop="57798" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="440" r_length="290" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="459"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E227564" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58707" e_stop="58558"/>
          <exon e_start="58091" e_stop="57798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATTTGTGCTATGGGTGATGAGAGAACTACCACCTCCACTTGTCACTTTCAGTCAACAGGAGTCGAGGACAATAGCTTTTATAAATGACAGTTCAGCGACAGTACAGCCTCAGCGATGGACAGCTGCTGCAAGTGTGCAAAATCAGGTTTCTTGCCTTCTTTTAACTCTAATGCACACCTTGTTTGTTGATTTGTCTCTAGTCGTGTGCATCATGATCTTGAGTAGGGAACACGTAGAAAATGCATGTTCATTTACAAGGGCTATAAGCCTATCACTGATTAAATGAAATGGAAAAAAGTTCAAGACGAAGCAAATAAATTATTTATCTCCTGGCACATTACACTAGGGATGGGGAAATCATGGTAAGTGAAGCTATGGCTACAAATCATTTTAGCTGTCCATTAAATTTTTCGTTAAGATCCACCAACTCACCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAGCATTATTTTTAACCTCACATCAAAACCCAAAAGAGAATGTGAAAGTAGAGTGCAAAATCAATGAAGAACTCTTTTCATTATCTTACACTAGATGGATTCACAAACTTGTACCAATGTGTTCTAAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCACCGTGATGGAATTTGTAAATTGATTGGTGATTTTCAGCTAGAGTGAAGGACTGACAATACTAAAAATGAAAGAACTTCTCAGTTGAGTGGTCGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGATAAAAAATACCCCTTGCAACTAAGTAAGGTGGTTGCTCAGGGTACACATGCCTGCATAACTTGGATTCTTGTACATAGCAATGAACTTTCTAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAG</genome_strand>
        <mrna_strand>TCAGCATTTGTGCTATGGGTGATGAGAGAACTACCACCTCCACTTGTCACTTTCAGTCAACAGGAGTCGAGGACAATAGCTTTTATAAATGACAGTTCAGCGACAGTACAGCCTCAGCGATGGACAGCTGCTGCAAGTGTGCAAAATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGGGCGAGCCCCATATGATCACCGTGATGGAATTTGTAAATTGATTGGTGATTTTCAGCTAGAGTGAAGGACTGACAATACTAAAAATGAAAGAACTTCTCAGTTGAGTGGTCGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGATAAAAAATACCCCTTGCAAC----TAAGGTGGTTGCTCAGGGTACACATGCCTGCATAACTTGGATTCTTGTACATAGCAATGAACTTTCTAAATTTTACAGATTCTTTTTCGTTGATATAATGAGGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249750" ref_strand="+" ref_description="SGN-E249750 [cLEF-57-I6]">
      <seq>aaattcaaagaaaaagataccatcgaggctgcataaagagaaaaaaaagtaaggggaattaggagaatatcgttttggataccatttcattttcttttttacttcttcaagacttgtttgttgtaagtgttttgggtacatatatatgcatatatatatatatatatatatatatatatatatatatatacaagcttatcatcatattgtgtgtccacgtttttttctctgtattagaggggaaagggggtaagaaggattgaggcagtggatggttttttaaaaggtaaagaaaaagagtgagaagaacatgattgagtggagagaagggacttgttatcctaaggctttaatgggagtgaatgtgggtcttgcttctgtcgatgccgttattgcagttcttgcttttgctcagttaatgagaattcactctcggaatacacacaatggctggactcgtcagaaagtatttcacttgatgattggatcttcaaatttgggttatttcctttattttattttgacaattgttgccgcatgtaagggttggattttctggtcgcactcctgtggctttgtggttatggctttccccaaaattcttttccttgcggcatttcttcttctcctttctttctgggttgatctttgtcatcagtcaaatgatgaagaagatgaagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="72072" stop="61758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71772" g_stop="71354" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71353" i_stop="67300" i_length="4054">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67299" g_stop="67249" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="466" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67248" i_stop="65176" i_length="2073">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65175" g_stop="65142" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="500" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65141" i_stop="63510" i_length="1632">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.541" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63509" g_stop="63423" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="587" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63422" i_stop="63352" i_length="71">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63351" g_stop="63300" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="639" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63299" i_stop="62103" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62102" g_stop="62058" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="684" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E249750" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71772" e_stop="71354"/>
          <exon e_start="67299" e_stop="67249"/>
          <exon e_start="65175" e_stop="65142"/>
          <exon e_start="63509" e_stop="63423"/>
          <exon e_start="63351" e_stop="63300"/>
          <exon e_start="62102" e_stop="62058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAAAGAAAAAGATACCATCGAGGCTGCATAAAGAGAAAAAAAAGTAAGGGGAATTAGGAGAGTATCGTTTTGGATACCATTTCATTTTCTTTTTTACTTACTTCAAGACTTGTTTGTTGTAAGTGTTTTGGGTACATATATATACATATATACATATATATATATATATATATATATATATATATATATATAAGCTTATCATCATATTGTGTGTCCACGTTTTTTTCTCTGTATTAGAGGGGAAA-GGGCTAAGAAGGATTGAGGCAGTGGATGGTTTTTTAAAAGGTAAAGAAAAAGAGTGAGAAGAACATGATTGAGTGGAGAGAAGGGACTTGTTATCCTAAGGCTTTAATGGGAGTGAATGTGGGTCTTGCTTCTGTCGATGCCGTTATTGCAGTTCTTGCTTTTGCTCAGGTACTCTTCTCTCCCCCCTGTTCTTCATTGTTTCAGAGGGTGTTGTTATATATGTGGAGTTTCTGCTAAAAATTCTGTATTGATTATTGGAATTTTTTGTGTTGGGTGTTCGTTTCTTGTTCCCAATTTGGGATTTTGGGAATGCATTCCAATTGGGATTTTTGAAGGGTTTTAATGGATTCTGAATGATAATCTTGTTTGTGATGGGCAATGGAAAGGTGCTGTTTCGGCTAGGTTTGTGATATTGATTGAAAAATTGAGTCCTTTTGCTAAATTTTCTTCCTGTGGCTTATTAGTTTCTGGTTTCTGTGTTGTCAATTCCGTTAATATGCTTGAATTCGAAGGAATGTAAGTTCATTTGTCACAATGGGGTTAAGTTTTTTGCTTTCTAATTTATCATGGGTTTATACAGACGCATTTTCTTGAGACAGTTTTCTGCCATTGTCATGCATAGTTTAATATAATAAGTAGTGTATCTCTTTGACAAGTTCTGCTGAATTTAGTAATTTAAAGTTGCAAAGATTCGATTCGAAGAGACCAAATGTAATCTTGTTCTGAATATGGATTTTCTGAAGCAGAAAGCTTATTTTTCACGGGGACTTTGCCATAGATCACTTGCATAGCGATTTTTACTATGATTTCTCTTCCTCTTCTCTGGGAGGAGTAGGATGCAGTTTTTCTGGGCCAAATTGTGATATGTTTTGTCATATAGGGCTTGCAGCAACATTTAGGGAGTTATCGAGAAGTGATTTTCACTGTTTTGAGGGACTTTACCAGTATTATGGCATTTATGGCCAATATGATTACCCATGGAGATTGCATTAAGTATATGATTATTATCTCCACATTCAATAGATTTTGCTGCATTTGGTGAAAATGGTTAGTTTCATTGTTACAATACCATCTAAGATACTAGCTAAATGTGGAACTTTTGAATCATTGGTATTCGTATACCCGCTCTGCATTTGTGTAGGTGAACATGATTTTTGATGTCCTTGAGAATGGGCTAAAATTGGGATTGTTCTTGAAGCAGACTACTGGGATTCAACCATGTGTTGTTTTTCTGTTAATGCTTATCAAATACCATATTAGTCCTACGCTTGCATATTATTTGATTAAAAATGGAATAAAAAACAATTTTATCTGAAATTATATTGTTAAATGATTCTCGGAGAATCAAGAAGATTGTGGGTACTAATTTTATTCATGACAAAGAGATCTTATATGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGCGAAAGCAAGGGGTATGCCTTCTGGGTCGAGATCGCCTGGTGCGGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTGTGCGCACCCAAAAGGGTAGTAGCTGCGGGTTTCCCTTGTAGTAAAAAAAAAAAAAGAAGAGAGATCTTATATTTCAATTTTGGACCAGAGATGATACGTGTAAAACTCTTCTTTCTCATTGAGAGTGCAAGATATCATTCCAAAGAATAGTTTGAAAGCTATTCAGAAAGTAGCCAATTTTTTAGAGCTAATGGCTCTTGTTTAAGGCAGGAGAGTACCTTGCTTTTCCTTTTGAGATATCCGGTACTCTAACAGAATTTTGTGATCCTTTTGTTCACTATCCAAATGCAGTTAAAGCAAAAACTTGGTACGTTGGGATAACCTTTAATTGAAAGCTAATATGGTGTAAGCATAACTCAGGGTATGGATCTTTTTTTCCCATCCATGTTGTTGTCAATGCTTCCTGAACTGCAAACCGAATCTCCAAATATCTTCCTTACTCCTCCTCCTTTAGGCATGACCTCTTTGAAGGTTTTTTTTTTCTTTTGATGAAGTAATTAGTTCTATTGCAGGCATCAAGTAGATGCATAATAGTTAGAAAAGCTTAGTAGCAAAAGGTCAGCTCTCCTTTACATTGTTAATTGAGAATCAGGGAGCGGACATGGTTCAGAAATCAGGGCAATCTAGAGGGGATAAATAAACCCAACTATACAAAAACATGAGGCAGTTAGCTTTTAAAGATTGGTAGGTAGTTGATTCCATCAAAGCATCTTCTATTCCTTTCGTTCCAGATACTCCAAAAAATGGCTGCAGGTATCTTTGAAGGTTAACTGACGTACCCCACTTCATATCCCAAGATCATGGTGGATGATGGTTAACTGCAGTGAGGAAGCATTCCCTTTTTCTAATTATTTTTTAAAAAGTCTACTTCTTAAGAAGAAAAAGACATTGCAGACCTGTATCAAAATATTTCATCACTGCTTGGTGCAGCTTTCTGCGACTTAGGTTGCAACTTTCTCCAGTTCTTCTTCTTCAAGCTCCAGCTATGCTGTGTTGCTGCTTCTTCTTCTTCTTCTTCTTATTATTATTATTATTATTACCATGCTGCTATGTTTTTTTTGCTGCTGCTTTCTTTTTTTCTCTTCTCTTGTTTCGGTCTTCTTCAGCTTTTATATTCTTTATTTGTTTCTCTTTTTTTTCTTCTTCAGTATGTTAATTTATTTGGATTTTGTTTATTTGTTGTCTTCTTCTTTTTTTTTCTTTCATGTGTTGCGTGTACTTCTTGTGTCTAATTTTAATTATTTTATTTCCATTTTCTTCTCATATTCATTTTATTCTCTTCTTTTTCAGTAGCTTTTTTTGAATTACAGTTGTTTTTTAATTTTTTGTTCTCTTAACAGCAATTTCAAATGGTATCATCTGAGCAAAATAGAGCCATCAATTTTTTCAATGGCATCATCCATTTATGTTTTGTTTTTTATTTTGCTTGTTCTATCAAGCATTTCTGGCTATCAACTTTCTAGTTTTAAAATTGAAAGATTTGCTTCTATATATTATTTCTGTTGATGTCTTTTTTGATTTAGTTATTTTACTCATATGTGCGAGGTTTATTTTATTTTTGAAATGGTGCTTCACTTCAATGAAGAGAGTGAAGGGAGCTTTTGTTGCTTTTTTGCGCTTCATGCTCTCAAAAACACTGCCTCCCAGCAAACTACTCTATAATTAGTCCAAGGGGAGGGCTAGATTGGTTTTCTTCTACAAGTATAAGTGTCTTCTCCTCATGTATCTTGATTGGTTCAAGATGGAAATCGTTAAGAGTCCCTTGATTATTTGTCCCACTTGAATAAAGAAATTGTTTCTTCGGCTTGGTAACTCTTAAAGGAGGTGTTTGACACATCCCTCGGCAGAAGATGTTACATATGCCTTGTTTTTGCATTGCTCAGTTGCAGCCGATATATGGAAGTATATTCCTGTCCTTTTGTCATTCAATGAGTTATGCCTCATGGTCATAGCATAAAAGCACATACATAAGTGGGGACAATAGAATGTAAGGGAACAATTAAAAAGTTTTGACAGACTGTTCCAGCTTTTATTTTATTTTTTGGTGCCTATGGCTGGAAAGAAATAGCAGAATATGCTTCTCAAGGAGCCTCTTCTCCTATTCATGCTTTGAAGTATGGATGTCTTGGGAACATTTTTTTCTGGAGTAACCATTATATTCTGAATAATTTTGACCAGCTTTTACACTTTGTTAGCTCCTTAGGCGGCATAAAGGAGGATCACTGTTTAATTTAGGTGCTTGCTTAATATGACTAGTTGCTAAGATTGAAAACCAGAGAGGCAGGGGGTGGGGGTTGTGGGAGAGTTTGATGTTGTCAATGAGTTATCAGCATTCAACTACAATCTAGGACCATTGTGAAGATGAGGAATGAATCGAGCAGAGTACTTTTTGACACCAACTGGGTGACTAACTGAAAAAGAGGAAACCTTAATCTAGCTCAATTCTAACCTTGGGATACTGAAGCAATCGAATGGCTGCAAACCAGTTTGGTGCTTCTGTTTAGGTTGCTGCTCGTGCCTTCCGTGGTTGCATAATATTGGTGCAACTCTATTAGAGTATATTCTTGTGCTGTTAATGACACTCACATTTCCAGTGTGGTAGTGATAATTTCTGGTTAAATAGATTGTGCCATCATATTTTTGTGCAACTAAACTTGCTTATCTATTTTTCCAGTTAATGAGAATTCACTCTCGGAATACACACAATGGCTGGACTCGTCAGAAAGTAAGTATTTCATCCTCGATTCTCTTGCTGATTTTATTGGTATCTGAGCTGGATGAAAACATTCTGTCCCTCCTACTTTAAATTAAAGTACTTTCCCAAGGTTTAAGTAATTATTGAACAATGTGAAAGCAGGCCAATTTGCTGCCGACACTTTTTGCCTAGTTCCAATTATGAATAGCAAATATACTAATGAAGCATGTTGCTAGATGCTTATATGCGACCGACTTTCCCTTTGATACCGAAAGTTACTGTGATTTGGGTGTTGTTAATTCTCTTTGGGAATTGCACCGAGGGTGTGGCCTAACTGTCAATGAAGATGAAAACCATGGAACATAGAAGAGACAAAGACTCCTAAGTGAGTTCTTCCCATTTGCCTAAGCCTCAGAGGGTAAAGTTACCCTGTATTTGTGTTGGTGTGCGGTAGTCGAAGTGCTCGCAAACTGGTCTAAACACCACAATTACAATAATAGTAGTTTTCTTCGGCAACTAAGACTTAGGTATGCATGTTCATGTGTGTAATCATTTGTATCTTTACATTAACCATAAGTGACAAGGATAAAATCGTGGAGGAGGTGTGCGTATAGGGAGTATAGTTTGAGTAAATGACTGGTTATGTGAGCTCTATTACTGTTGGTACTTGGTATTATTTTATTTTATTTTTGCATACTTATTAGGAACACTTCCCTCATCTGTTTTCCTTCCAGCCAAGCTCCTCACTTATGTTGCCGGTTTACCTATTAAGAGTGTAGAAGAGAGGAGAATGTGAAAAGTCCCAGAACCCATGTTGATGATATTCAACTAAATACTCTTGTCTAAACCATTAGTATTATAATGTTCAAAACGCGTGCCTAGCATTTACGGTTCAGGTGACTTATCATCTCTTTTTAATAATATTAGATAATTCAGGTGACATAACAGTGGTCTTCAGAAGCGAAAATATACTTCAGATTCCTTTACAGTTGTGGTATTAAGTTGCTTCTTTCTCACTATTGCCATAGTAATGAGTAACGATCCTTATCCTCCGTTTCTACAACTTGATAACTATTACCTAAAATTTTCTTTTTTGATAACCATTGCCTAAATTACTGTTCATCATGTAGGTTTTCAAAATTTTAGTATTCATACCAGGTTAGTCTCCAATTTTTTCCATGTGATCTAGTTGTACTCTCTTAATGTATCTCTCTTCCCCTCTCAGTCCTCTGATGAGTACAAATCCAAACTTCAGGATATTAAACCCAGCCTAATTACTTGGCCATTATGGTATTAGTGGTTCATTTATGCTCACATCTAAATTCTTTGGTGTTAGAGATGAGGGGTGTCTATGCTCAGTTCTTGGTGCAAGATCAGTCTATTGATGATTGACCATGGAGGTTTTACGAGTGTGATAATGGTGATATTGAGCTCTGTAACAGTCAGGGTCATAGTAGTGATCGTCTTGTGGAGTTAACCGGTAAATGCTGGCCACTGCTACGTTCTACCATGTTAACTTCCAGCCAAGTGGTACAATGTGTAGTGCAGATTGGGTTGAATATTCTGGTGATGTTACTTCTTCAAAAGAACACAAATGCATCTTTGAATAGCTGAAATTAGTGAATATCGAGGAGTCTTGTTCTGCATGAAATGATCCAAGTATGGTGCAACAAGACGCTTCTTCCACTCATTTGAAGGCACTACCAAAAAACGAGAGTCAGTTTACCTCCTTGTTCTTCTAATACCTGACTGTGAAGTGGCGCATGCTTGATATACCAATTGGAAACGAAACTGGGCTAAACTTGATAATATCTACATAGACTAGCTCCGTGTAATAACAAATAAAAGACTTCATCAACTCTGAGGTAGCACTACATCTCTTGGAGGATATACACATATATTAGAATTTGGAAATATATTGCCTTAATTAGTTTAGTTTACTGCTATGAAGCGACAGTCATCAAGATTTTTCAATGATTCTTCTTCCTTTTGTCCTGGTTAGCCTTAAAAAAAATTCTTTAGTAGATTCAATGAGGCTTCCTTCTTGTTCACTTATGTGCTAATTACAAATCATGCTTACTGGACTTCGCTATGAAATTGCAGGTATTTCACTTGATGATTGGATCTTCAAATTTGGGTAAGCATCTTATTTTCTCTGTTGTATCATCATTCTATCTATGGATTATTTTTCCCTGAGATCTCCCCGGGAGCTCTTATCAAAAGAAAATATTTGCACTCTTACTCATAATATTGAGTTTCTTAAGCCAATTGTTGATGCATATTTTGTTTTGAATGCACATGGGAGAGATTAAATAATGTGAAGCACAAAATGATAAGCAATTTTAAGAGTTAATGCAATGATATGACTTAGATTAATTTGGAAAATATGAAGTTGGGCAAGATTAAGTAATATGTCGCTTTTCTTTATCATTTATGGGAATACAAGCTTCCTGCAAACCTTTCATCCATATGGGGTAACTGAGTTTTTTTTGAGAAAGGTAAAGTTAATTCTATATATCCACATGTATACTACATCAAAGCGTAGTCACAAGGAACAAATATCAAGAATATTTGCTAGTTCTCTATGTACAGAACTCATGGGGTAACGGAGTTTTGTACATAGAGAACTAGCAAATATTCTTGATATTTGTTCCTTGTGTAGCTTCTCACTAACATTTGACTCAATGGTGGAAGTGTTGAAAAGCAACATGTTATGCTTTAATTAAACGTAATTAAAATGTGGGTTCTTCTGAAAAATGTGCTGATACGAAGTAAGAAGGATTTTAATCTAGTGCAATCTATAAAAATAGAAGAAAGAAATATGTATCCAGCACCAGAAAACATAATTATGAACAAAAACAACTAACTCAGACAAATGAGTTGGTAGATACACAACTAGATGAGATATTTAGAGGTAAGACGATGTAAATTAAGTTCAAAGATCATGCCAGTTTTCTAATTTAGATGCAAATTTGCTGCTTTAAGTTTCTGCTGCACTGCATTCTAACTTCTATTCCTAATAGTAACAATTCATTTGTTTTGTTCTTTGTAACAAAGTAAGATATTAACATGCAGGCTGCGTTTCAGCCCAGTATTAAAATGAGTTGAACAAAGCGGGTCAAAATGAGCCCGCTTAATAAAATAAGTGGGTTATTAATCTGTCCGAATCTAAACAGGCTGGGTGGGTTATGATTTTGGGCTGATTTTATAGTATCTTGTTTTCAAAGTAAACAAGCTCAGTTATTTACCTCATTGAGTTTGAGATGACGTGTTAAAGTATCATTACTATTATTATCATATTCTTCAATTAGATCACTGGTGTTGTTTCTTTTACTTGGGTTATCTTCACTATTTTTGTTTTCAGTACTACTCTTTTCTACAATATTTTTACAATAGCTTTTACTCTTGTATATGCCAAACCTGTTTTCGAAAATGTTTTTCTTGATCCGAGGGTCTATCAGGAACCTCTCTACAAGGTTGGGGTAAGGTCTGTGTACACCCCAACCTTCCCAGACCCCACTAGGTATGTCATTGTAGAAGATCTAGCTTCTCGTTTGGTAGAAATTAAGGGCACAAAGTGTATAAGCTAATTTGGACATGGAACTTTGATAAACCACCTGTGCTCGTGTATACAATTATCTTTAATACCTTACCTTTATCTTTTATTTTTTGCTTTCTATGCATTTCATAATGATAAAGTAAGTTACTGTCCAGCAAGTGATCTGTTTGAATTTAGTTGCATTTCATAATGAATTTAATTCTCCTGCAGGTTATTTCCTTTATTTTATTTTGACAATTGTTGCCGCATGTAATGGTTGGATTTTCTGGTCGCACTCCTGTGGCTTTGTCGTTATGGGTATGTGCAAACCCGCCGTTCTTTTTCAACTGAGGCTATTTTAACTAAGACTTATGAAAACTATTTTGCAGCTTTCCCCAAAATTCTTTTCCTTGCGGCATTTCTTCTTCTCCTTTCTTTCTGGTAAGTTCGCCTTCTGTTTTCTATATCCTTTAACGAGTGAAAATTATTGTTGTGAATTTAACGATTTACCTTCTTTTTATAATTCTAATTTTGAGGAAAAGAAACTAATTTATGAGGGAAATTCAGTATCATGATCTTCCTATTTTTTCTCAGTCATCTTCATTCCAGAAAATAATCTTGGGGCAGAGAAGCAGTACCTGTTGCTTTAATCAGTAAGCTGACAAAACCAGCAGTTTGCGAGACACCAAATAATGATCCTCTTTTGGTGAATAGCAGTTACTTGCTAAAGTTGCGTGACTTCACTTTCAATGCCACACCCGTGTCGGATTCTCCAAAAATCCACTACTTTTGGAGAATCCGACATGCACCCATTGTCATTTATGAAGAGTCTGAGCAACATAGGTTACTTGAGCCTAGTGCTGTTTGTAGATTATAGATACTTCTGCTCTACACCAACAAAGTTGTCACTTGTCATGTATCTCTTTTTTTTAATATCCGATCAGTGGTGCAACATTCAGTGCTTGGTTGATAATGGGCACACTCCTTTATACTTTCTCCACTTAAACAACAACAACAACAAACCCTGTGTGATCCCACAAGTGGGGTCTGGGAAGGGTGGGGTATACCGTATACGCAGACCTTACCTTACCTTTATGGTGGGGTAAAGTTGTTTTCGATAGACTCTCGGCTCAAAAATGGGAAAGAGTGTTTTACAAAACAGGTTTGAAAAATACAAGAGTAGGAGAACTATGATGCAACTATCAAAGAAAAGAAAAATATCGACAACAAAATAGAAAAGATAAGCAAAGTAAAAGAAATAACAGTAGTTCTAAATCTTAAAGAAAAAGGTAACGATACAACAAGAATTATAGTACTGATAAGTATAAGAAGGAGAAAATAATGAACTTCTCCACTTACATACCAGTTCTTTATTTGCAGTGGAATATATACCCGTGACATGCGCCTGACCCACATATCATGACATCACACACTATGTTCTCACCTTTAGACCAAAACCTTGGTGGCCAAAGTTGTCGTGCGTCTTATATCCTTTTGCACTTGAATCTACAAAAATATTACTATACAAGAACCTCTGAAATAAAAGAAAATGTGCAGGGGTCCAAGCCATGAACTCTATCTTCATGTAGAAATTAAATATTGATGAAGTCTAAAATCCTTTTCTGTAAATGAATTTAGGGTTGATCTTTGTCATCAGTCAAATGATGAAGAAGATGAAGATGA</genome_strand>
        <mrna_strand>AAATTCAAAGAAAAAGATACCATCGAGGCTGCATAAAGAGAAAAAAAAGTAAGGGGAATTAGGAGAATATCGTTTTGGATACCATTTCATTTTCTTTTTTACTT-CTTCAAGACTTGTTTGTTGTAAGTGTTTTGGGTACATATATATGC--ATAT--ATATATATATATATATATATATATATATATATATATACAAGCTTATCATCATATTGTGTGTCCACGTTTTTTTCTCTGTATTAGAGGGGAAAGGGGGTAAGAAGGATTGAGGCAGTGGATGGTTTTTTAAAAGGTAAAGAAAAAGAGTGAGAAGAACATGATTGAGTGGAGAGAAGGGACTTGTTATCCTAAGGCTTTAATGGGAGTGAATGTGGGTCTTGCTTCTGTCGATGCCGTTATTGCAGTTCTTGCTTTTGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGAGAATTCACTCTCGGAATACACACAATGGCTGGACTCGTCAGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCACTTGATGATTGGATCTTCAAATTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCCTTTATTTTATTTTGACAATTGTTGCCGCATGTAAGGGTTGGATTTTCTGGTCGCACTCCTGTGGCTTTGTGGTTATGG.......................................................................CTTTCCCCAAAATTCTTTTCCTTGCGGCATTTCTTCTTCTCCTTTCTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGATCTTTGTCATCAGTCAAATGATGAAGAAGATGAAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372436" ref_strand="+" ref_description="SGN-E372436 [TUS-32-K10]">
      <seq>agtcatgtgcatcatgatcttggctagggaatatgtagaaaatgcatgttctttcataagggctattcactgatcaaatgaaatgggaaaaagttgaagacaaagaaaacaaattatttatctcctcgcacattacactagggacgggaaatcatggtaggtgaagctatgtgtgtgagaatcattttagctgtccattaaatttttcgtaagatccacaaactcgccagaattgcagcttagcagttgaaagacaacttatacaaacattgttttttacctttcaccgaacatcaaaacccaaaagagaatatggaaggaagtgcagaatcaatgaagaactcaactttctgcactggaggtctttccactcatttattgattttcattatattacattctttggatttacaaacttgtaccaatgtgttctgagcattgtggatgcaggtctcaagggcgagccccatatgatcatctgatggaattgtacattgatcggtgattttcagctagaaacgagggattgacaatactaaaaatgagacgacttctcagttgagtggttggtgttgtggttgagtgatcgaagaaagctcaactcaacgggagaataataccccatgtatctaagcaaggtaggttgctcagggtatacatgcctgcataacttggatttctgtatttatcaaacattgcaatgaacttttcaaattttacagattcttttttgttgatattatgaaggtttaaaatttttcttgccttaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="83298" stop="81926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82998" g_stop="82226" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="775" polyA_stop="787"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E372436" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82998" e_stop="82226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAACACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCGTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATCTAAGCAAGGTGGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATG-AGGTTTTAGATTTTTCTTGCCTAACAAAA</genome_strand>
        <mrna_strand>AGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAAAACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCTTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATCGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACGACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAGAATAATACCCCATGTATCTAAGCAAGGTAGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATTTATCAAACATTGCAATGAACTTTTCAAATTTTACAGATTCTTTTTTGTTGATATTATGAAGGTTTAAAATTTTTCTTGCCTTACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372435" ref_strand="+" ref_description="SGN-E372435 [TUS-32-K10](-)">
      <seq>gatcaaatgaaatgggaaaaagttgaagacaaagaaaacaaattatttatctcctcgcacattacactagggacgggaaatcatggtaggtgaagctatgtgtgtgagaatcattttagctgtccattaaatttttcgtaagatccacaaactcgccagaattgcagcttagcagttgaaagacaacttatacaaacattgttttttacctttcaccgaacatcaaaacccaaaagagaatatggaaggaagtgcagaatcaatgaagaactcaactttctgcactggaggtctttccactcatttattgattttcattatattacattctttggatttacaaacttgtaccaatgtgttttgagcattgtggatgcaggtctcaagggcgagccccatatgatcatttgatggaattgtacattgatcggtgattttcagctagaaacgagggattgacaatactaaaaatgagacgacttctcagttgagtggttggtgttgtggttgagtgatcgaagaaagctcaactcaacgggaaaataataccccatgtatttaagcaaggtaggttgctcagggtatacatgcctgcataacttggatttctgtatatatcaaacattgcaatgaactttccaaattttacagattcttttttgttgatataatgaggttttagatttttcttgcaaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="83227" stop="81926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82927" g_stop="82226" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="703" polyA_stop="713"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E372435" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82927" e_stop="82226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAACACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCGTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATCTAAGCAAGGTGGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAGATTTTTCTTGCCTAACAAAA</genome_strand>
        <mrna_strand>GATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAAAACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCTTTGGATTTACAAACTTGTACCAATGTGTTTTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATTTGATGGAATTGTACATTGATCGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACGACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATTTAAGCAAGGTAGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAGATTTTTCTTGCAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426636" ref_strand="-" ref_description="SGN-E426636 [STM-46-N2]">
      <seq>gcaagtgtgcaaaatcaggtctcaagggcgagccccatatgatcatcgtgatggaattgtacattgattggtgattttcagctagaaatgagggactgacaatattaaaaatgagagaacttctcagttgagtggttggtattgtggttgagtgatcgaagaaagctcaactcaacggaaaaaataccccatgcaactatgcaaggtggttgctcagggtaaacatgcctgcataacttggattcctgtacatagcaaacattgtgatgaactttttaaattttacagattctttttgttgatatgatgaggttttagatttttcttgccctggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="83369" stop="81934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83069" g_stop="83052" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83051" i_stop="82549" i_length="503">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82548" g_stop="82237" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="327" r_length="309" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="335" polyA_stop="352"/>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E426636" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426636" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="83069" e_stop="83052"/>
          <exon e_start="82548" e_stop="82237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTGTGCAAAATCAGGTTACTTGCCTTCTTTTGACTCTATTGCACACCTTGTTTACTGATTGGTTTCTAGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAACACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCGTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATC-TGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATCTAAGCAAGGTGGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAGATTTTTCTT</genome_strand>
        <mrna_strand>GCAAGTGTGCAAAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGGGCGAGCCCCATATGATCATCGTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAATGAGGGACTGACAATATTAAAAATGAGAGAACTTCTCAGTTGAGTGGTTGGTATTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAAC-GGAAAA-AATACCCCATGCAACTATGCAAGGT-GGTTGCTCAGGGTAAACATGCCTGCATAACTTGGATTCCTGTACATAGCAAACATTGTGATGAACTTTTTAAATTTTACAGATTC-TTTTTGTTGATATGATGAGGTTTTAGATTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E601438" ref_strand="+" ref_description="SGN-E601438 [54476]">
      <seq>gagaaatctaaaacctcatcatatcaacaaaaagaatctgtaaaatttagaaagttcattgcaatgtttgctatgtacaggaatccaagttatgcaggcatgtttaccctgagcaaccaccttgcatagttgcatggggtattttttccgttgagttgagctttcttcgatcactcaaccacaataccgaccactcaactgagaagttctctcatttttagtattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="81939" stop="82770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82239" g_stop="82470" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E601438" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82239" e_stop="82470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATCTAAAACCTCATTATATCAACAAAAAAGAATCTGTAAAATTTGGAAAGTTCATTGCAATGTTTGATATATACAGAAATCCAAGTTATGCAGGCATGTATACCCTGAGCAACCCACCTTGCTTAGATACATGGGGTATTATTTTCCCGTTGAGTTGAGCTTTCTTCGATCACTCAACCACAACACCAACCACTCAACTGAGAAGTTGTCTCATTTTTAGTATTGTC</genome_strand>
        <mrna_strand>GAGAAATCTAAAACCTCATCATATCAAC-AAAAAGAATCTGTAAAATTTAGAAAGTTCATTGCAATGTTTGCTATGTACAGGAATCCAAGTTATGCAGGCATGTTTACCCTGAGCAA-CCACCTTGCATAGTTGCATGGGGTATT-TTTT-CCGTTGAGTTGAGCTTTCTTCGATCACTCAACCACAATACCGACCACTCAACTGAGAAGTTCTCTCATTTTTAGTATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294092" ref_strand="+" ref_description="SGN-E294092 [cLET-13-G14]">
      <seq>agtcatgtgcatcatgatcttggctagggaatatgtagaaaatgcatgttctttcataagggctattcactgatcaaatgaaatgggaaaaagttgaagacaaagaaaacaaattatttatctcctcgcacattacactagggacgggaaatcatggtaggtgaagctatgtgtgtgagaatcattttagctgtccattaaatttttcgtaagatccacaaactcgccagaattgcagcttagcagttgaaagacaacttatacaaacattgttttttacctttcaccgaacatcaaaacccaaaagagaatatggaaggaagtgcagaatcaatgaagaactcaactttctgcactggaggtctttccactcatttattgattttcattatattacattctttggatttacaaacttgtaccaatgtgttctgagcattgtggatgcaggtctcaagggcgagccccatatgatcatctgatggaattgtacattgatcggtgattttcagctagaaacgagggattgacaatactaaaaatgagacgacttctcagttgagtggttggtgttgtggttgagtgatcgaagaaagctcaactcaacgggaaaataataccccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="83298" stop="82073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82998" g_stop="82373" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E294092" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82998" e_stop="82373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAACACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCGTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATG</genome_strand>
        <mrna_strand>AGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAAAACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCTTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATCGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACGACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542433" ref_strand="+" ref_description="SGN-E542433 [TUS-63-L21](-)">
      <seq>agttttctgtaaatgttggtagctgctgtactaatatgattgggaggggaaggaaccctatgatttcatctgttctggctcgggactggtattgttcttgaaaatgagcaaagtgagatctgaaagggcatcatcagaaatgtggaaggttgcaggcttggcagttgtttctgttctatgtttcactttaagtgagctgtcgccttattcacagatataccccttcttttcaactggcgtggacaggagataaatggtgtttgtacatctcttctcattgtttgtacatctcttctcatggttttatattattttataggtaccctttaaaacttgtgttccttactgaaagcttgatttgaaattctagacttcagtgggaacttctgctttctgcctgctaattggtgttaccaattgttgaagctacgagattctcctcaagcccaaccccttatacctaggagctactaactgtagttaattagatgaaaaaggctgaacatggtggaaggaaccaatttaataatcagaggttgctctgatgatgttattaagtgcattaatatcgtaaacattttgaggagttgcgagatgtctctctggatcctctttacagaagttgggagctatcgagtaaggacttaacataagagctggattgggacatattagatatttctttagaattcggggcatgactgagaggggactccagttaatttgttcaaccaagaatgcaagtagcgtgtacgtgttttgttggggggagctgatcttacaatgcagttctttcctacaaattagaattttattcacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="85953" stop="82961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85653" g_stop="85569" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85568" i_stop="84334" i_length="1235">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84333" g_stop="84269" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="148" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84268" i_stop="83998" i_length="271">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83997" g_stop="83864" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="280" r_length="132" r_score="0.761"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83863" i_stop="83809" i_length="55">
            <donor d_prob="0.000" d_score="0.44"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83808" g_stop="83257" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="831" r_length="551" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E542433" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85653" e_stop="85569"/>
          <exon e_start="84333" e_stop="84269"/>
          <exon e_start="83997" e_stop="83864"/>
          <exon e_start="83808" e_stop="83257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGGGTATGGACTAAGGCTCTTTGATTACCAATATCTATTTATTTGTTGTTCTTGCATATTCTGTAACCTATCTGATTTAGCAGTTGTTGGTACTTCGCATAGATTACTTTCAGCCTCACATATTCATTTTTAGCTGCAACCAGATTTTATAACACAATCTATTTGATTGTTGTTTTCACATATTCTTTCTTCAATCCATTTGATTTAGGAGTTGTTTGTTCTCTTTATAGATTACTTTGAGCCTCACATTCATTTTTAGCTGCAGTTAGATTTTAATGCACAAACAAGTATATACCTTCGACTTGGAGCCCTAACTGTTTCTTAGTATTTCCTGAGAGGAGCATCTCGTTGAAAGAGAGGGTGTGTTCCCCTGTGAGTAAGGGTAGTTCTTGTAAAATATTTTTCATGCTTAAATGAATACGTATGGTATTTTTAATTTGCTTACAATACTGGTTTTTGGTGTTTAAATTATTGTTGGGAAAATATAAATTTAGACTGTTTCATGGTGGTTTTTTTCTTTGCCACCTCTCCCCACCTTCCTCTTGATAATTGATGAAGTGCAGTTACATGATCCAGATTTATGTAGATCTTTTTGCCTTAGCAGTTCTTTTGCTGGGAGTGTGGCATTTGCATGTTATGGTTAGTATGTTATACACTGGTATTTTTTATACCGCCTCCTCATCAATGTTCACACGTCACAGAGAATTGTTGTCCTGCCATTTTCAGTAATATAATCTTATCTATTGCTACTATGCACCATAAATCTTTACATGGGCACTTCAGTACTTGTGTAATAACTAACGTCTTTTGATCCACCATTTCTTCACAGAATCAGCTGATATAAAAGATTGAGTTATTTTATTTAACAAGGATAGACTTACAAATGTTCAAGAGTTCTCTCTCCCTCTATGTGTGTGTGTGTCCCCAGAGGTGGGTCAGGGGTGTGGAGAAGTGATTTCAAGGAATAGTTTAAACAATAAGATATTCATGGTTGATAGTTTTAGGCGGTGAAACTGCTGCCTCCCCAGAAAGACCAATATTTCATCAGTAATATCGCAGTCGAATGAATTGATTGTTCAACCAATTATCCATTTCTCGTCGAGCTGTGCAAAATTCTAAGTAACAGTTGTCGTAAAGAATTTGCTGTTTAAACTAGGTCTTTTGTGTTCTAATTATTTTATGTGAAGGTTTCCTATTTCAAAATCTATCTTTCTGACCATAATATCTCTGCTATGCAGGACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCTTCATCAGAAATGTGGAAGGTACTAACTCATCTTTCCTCGGTGCATCTCTAGCATTTTCTGTATGTCGATTGGAATTGTTATTTGCAGACTGCAGAAAACTTCTGTGGCATGTCATATCATGTCATACTGAGATCTTTTACAATTCTAGTCTTAAGAATTGAGCTTGAATAAAGTGCACTTTTCTTTCTCTTCTTTTCTTCCTTGTTAAAATTCAGCTCTCATGACACAGATTGTGATAGATTATTTTATTGTGAAGTTTGATTTTTTATTATATGTTTGTCCAATGAAGGTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCGTATGTCTTCTGCTGGTCTCATGAGATGTCTTTTGTTTTGACTGCATAAGTTTCTAAGAGATTATGCTTTTAATGCAGCTTCTTTTCAACTGGCGTGGACAGAAGATAAATGGTGTTTGTACATCTCTTCTCATGGTTTTATATTATTTTATAGGTACCCTTTAAAACTTGTGTTCCTTACTGAAAGCTTGATTTTAAATTCTAGACTTCAGTGGGAACTTCTGCTTTCTGCCTGCTAATTGTTGTTACCAATTGTTGAAGCTATGAGATTCTCCTCAAGCCCAACCCCTTATACCTAGGAGCTACTAACTGTAGTTAATTAGATGAAAAAGGCTGAACATGGTGGAAGGAACCAATTTAATAATCAGAGGTTGCTCTGATGATGTTACATAAGTGCATTAATATCGTAAACATTTTGAGGAGTTGTGAGATGTCTCTCTGGATCCTTTTTACAGAAGTTGGGAGCTATAGAGTAAGGACTTAACATAAGAGCTAGATTGGGACATATTAGATATTTCTTTAGAATTCGGGGCATGACTGAGAGGGGACTCCAGTTAATTTGTTCAACCAAGAATGCAAGTAGCGTGTACGTGTTTTGTTGGGGGGAGCTGATCTTACAATGCAGTTCTTTCCTACAAATTAGAATTTTATTCACAAAAAAAAGGGG</genome_strand>
        <mrna_strand>AGTT-TTCTGTAAATGTTGGTAGCTGCTGTACTAATAT-GATTGGGAGGGGAAGGAACCCTATGATTTCATCTGTTCTGGCTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCATCATCAGAAATGTGGAAG...............................................................................................................................................................................................................................................................................GTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCCT-TCTTTTCAACTGGCGTGGACAGGAGATAAATGGTGTTTGTACAT-CTCTTCTCATTG.......................................................TTTGTACATCTCTTCTCATGGTTTTATATTATTTTATAGGTACCCTTTAAAACTTGTGTTCCTTACTGAAAGCTTGATTTGAAATTCTAGACTTCAGTGGGAACTTCTGCTTTCTGCCTGCTAATTGGTGTTACCAATTGTTGAAGCTACGAGATTCTCCTCAAGCCCAACCCCTTATACCTAGGAGCTACTAACTGTAGTTAATTAGATGAAAAAGGCTGAACATGGTGGAAGGAACCAATTTAATAATCAGAGGTTGCTCTGATGATGTTA-TTAAGTGCATTAATATCGTAAACATTTTGAGGAGTTGCGAGATGTCTCTCTGGATCCTCTTTACAGAAGTTGGGAGCTATCGAGTAAGGACTTAACATAAGAGCTGGATTGGGACATATTAGATATTTCTTTAGAATTCGGGGCATGACTGAGAGGGGACTCCAGTTAATTTGTTCAACCAAGAATGCAAGTAGCGTGTACGTGTTTTGTTGGGGGGAGCTGATCTTACAATGCAGTTCTTTCCTACAAATTAGAATTTTATTCACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542435" ref_strand="+" ref_description="SGN-E542435 [TUS-63-L21]">
      <seq>ctaattttggacatggaactttgataaaccacctgtgcacgtgtatacagttatttaaataccttacctttatcttcttttattttttactttctgtgcatttcataaggatcttactgtccggcaagtaatagtatgaatcggtcattaactttattctcctgcaggttatttcctttattttttgttgacagttgttgctgcatgtaagggttggattttctggcgcactcctgtggctttgttgtaatgggtagctttcaccagaattcttttccttgctgcatttcttcttctcctttctttctggttaccctgttagtttttctgttaatgttggtagctgctgtactaatatggattgggaggggaaggaaccctattgattcatctgttctggctcgggactggtattgttcttgaaaatgagcaaagtgagatctgaaagggcatcatcagaaatgtggaaggttgcaggcttggcagttgtttctgttctatgtttcactttaagtgagctgtcgccttattcacagatataccccttcttttcaactggcgtggacaggagataaatggtgtttgtacatctcttctcattgtttgtacatctcttctcatggttttatattattttataggtaccctttaaaacttgtgttccnttactgaagcttgatttgaaattctagacttcagtgggaacttctgctttctgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="87722" stop="59046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87422" g_stop="87166" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87165" i_stop="87092" i_length="74">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87091" g_stop="87040" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="309" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87039" i_stop="85665" i_length="1375">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85664" g_stop="85569" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="405" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85568" i_stop="84334" i_length="1235">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84333" g_stop="84269" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="470" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84268" i_stop="83998" i_length="271">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83997" g_stop="83864" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="602" r_length="132" r_score="0.761"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83863" i_stop="83809" i_length="55">
            <donor d_prob="0.000" d_score="0.44"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83808" g_stop="83690" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="721" r_length="119" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E542435" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87422" e_stop="87166"/>
          <exon e_start="87091" e_stop="87040"/>
          <exon e_start="85664" e_stop="85569"/>
          <exon e_start="84333" e_stop="84269"/>
          <exon e_start="83997" e_stop="83864"/>
          <exon e_start="83808" e_stop="83690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAGGTATGTGCAAACCCACCCTGTTCTTTTTCAACTGAGGCTATTTTAACTAGGACTAATGAAGAACTATTTTGCAGCTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTGGTAAGTTCGCCTTCTGTTTTCTGTATCCTTGAACGTGTGAAAGTTATTGCTCTGAATTTAACTATTTGCAAACTAATTAATGAGGGGAACTTTCAGTATGGTGAACTTCCCATTTTTTCTCCAGAGTCATCTTCATTCCAGAAAATAGCAGTACCTGTTAATTTAATCAGTAAGCTGCCAAAAATCAGCAGTTTGCAAGACACTGCTACTGAGCTTTAGAATGTGGTTGACCAAATAATGATCCTCTTTTGGTGAATAGCAGTTATTTGCTAAGTTGCGCAGACTCTTCACTTCCAATGCCCCACCCGTGTCGGATTTCCCAAAAATCCACTACTTTTGGAGAAACCGACATGTACCCGTTGTCATTTTTGAAGTGTCTTAGCAACATAAGTTATTTGATCCTAGTGCTATTCAAAGACTATAGATTCTTCTGCTCTACACCAAAAGTTGTCACTTGTCATGTATCTCTTTTCTTTTAATATCCGATCAGTAGTGCACCATTCAGTACACTCCTTTATACCTTTGTGGGGTAGAGAAGCTGTTTTTAATAGACTCTCGGCTAAAAAAATGGGAAAAACAGTTTTTACAGAACAGGTTTGAAAAATACAAGAGCAAAAAGATCTACAATGGAACTATCAAAGAAAAGAAAAATATTGACAACAAAATATAAAAGATAAGCGAAGTAAAAGAAACAACAGCAGAGCTAAATTTTAAAGAAAAAGGTAATGATACAACAAGAATTATAGTACTGATAAGTAGAAGAAGGAGAAAATAAGGAACTTCTCCACTTGAATACCAGTTATTTTATTTTCAGTGGAATATATACCCGTGACATGCGCTTAACCCACATATCACGACATCACACACTTTGTGCTAACCTATAAGAACAATGTGTTTTTGTTCTATAATTTAGTATGTGGTGATAAACTATATTAAAATAAACACATCTGATTATCACTTGTTATTAAATTATTTCTGTTTAACTTGTGCTTATGAATTATAGCAAATTTTAGAGTGTGTTTTTTTTATTAAAATATTGTTTTCTAAAATTCTTTCAAAAAATCTGTGCGGCATATGTCTGCTTTGTGGCAAAATCCCTATTCAATTTGTGAATGGCTTTCATGGTTTGTTTGTTGTAGAAGAACATCTACGTAATCCTCATTGTGTATAACTGTTTGAGCTATTATATTCTGTTCCTGCCTGTCAAATTCAATAAAATTGTTAAATGTAGGAGTATTAATTTGCGTACCTATTTGGACTGGTTGTTGTACATCTTGTATAATATTTTGTTGCAGATTTTTAGGCACACGGTAACTCACTGTATTTCTCTTTTTCCATTTCGGTTCTTTAGTCATGCACTTGCTTTTTTGACCAGGTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGGGTATGGACTAAGGCTCTTTGATTACCAATATCTATTTATTTGTTGTTCTTGCATATTCTGTAACCTATCTGATTTAGCAGTTGTTGGTACTTCGCATAGATTACTTTCAGCCTCACATATTCATTTTTAGCTGCAACCAGATTTTATAACACAATCTATTTGATTGTTGTTTTCACATATTCTTTCTTCAATCCATTTGATTTAGGAGTTGTTTGTTCTCTTTATAGATTACTTTGAGCCTCACATTCATTTTTAGCTGCAGTTAGATTTTAATGCACAAACAAGTATATACCTTCGACTTGGAGCCCTAACTGTTTCTTAGTATTTCCTGAGAGGAGCATCTCGTTGAAAGAGAGGGTGTGTTCCCCTGTGAGTAAGGGTAGTTCTTGTAAAATATTTTTCATGCTTAAATGAATACGTATGGTATTTTTAATTTGCTTACAATACTGGTTTTTGGTGTTTAAATTATTGTTGGGAAAATATAAATTTAGACTGTTTCATGGTGGTTTTTTTCTTTGCCACCTCTCCCCACCTTCCTCTTGATAATTGATGAAGTGCAGTTACATGATCCAGATTTATGTAGATCTTTTTGCCTTAGCAGTTCTTTTGCTGGGAGTGTGGCATTTGCATGTTATGGTTAGTATGTTATACACTGGTATTTTTTATACCGCCTCCTCATCAATGTTCACACGTCACAGAGAATTGTTGTCCTGCCATTTTCAGTAATATAATCTTATCTATTGCTACTATGCACCATAAATCTTTACATGGGCACTTCAGTACTTGTGTAATAACTAACGTCTTTTGATCCACCATTTCTTCACAGAATCAGCTGATATAAAAGATTGAGTTATTTTATTTAACAAGGATAGACTTACAAATGTTCAAGAGTTCTCTCTCCCTCTATGTGTGTGTGTGTCCCCAGAGGTGGGTCAGGGGTGTGGAGAAGTGATTTCAAGGAATAGTTTAAACAATAAGATATTCATGGTTGATAGTTTTAGGCGGTGAAACTGCTGCCTCCCCAGAAAGACCAATATTTCATCAGTAATATCGCAGTCGAATGAATTGATTGTTCAACCAATTATCCATTTCTCGTCGAGCTGTGCAAAATTCTAAGTAACAGTTGTCGTAAAGAATTTGCTGTTTAAACTAGGTCTTTTGTGTTCTAATTATTTTATGTGAAGGTTTCCTATTTCAAAATCTATCTTTCTGACCATAATATCTCTGCTATGCAGGACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCTTCATCAGAAATGTGGAAGGTACTAACTCATCTTTCCTCGGTGCATCTCTAGCATTTTCTGTATGTCGATTGGAATTGTTATTTGCAGACTGCAGAAAACTTCTGTGGCATGTCATATCATGTCATACTGAGATCTTTTACAATTCTAGTCTTAAGAATTGAGCTTGAATAAAGTGCACTTTTCTTTCTCTTCTTTTCTTCCTTGTTAAAATTCAGCTCTCATGACACAGATTGTGATAGATTATTTTATTGTGAAGTTTGATTTTTTATTATATGTTTGTCCAATGAAGGTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCGTATGTCTTCTGCTGGTCTCATGAGATGTCTTTTGTTTTGACTGCATAAGTTTCTAAGAGATTATGCTTTTAATGCAGCTTCTTTTCAACTGGCGTGGACAGAAGATAAATGGTGTTTGTACATCTCTTCTCATGGTTTTATATTATTTTATAGGTACCCTTTAAAACTTGTGTTCC-TTACTGAAAGCTTGATTTTAAATTCTAGACTTCAGTGGGAACTTCTGCTTTCTGCCT</genome_strand>
        <mrna_strand>CTAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAG..........................................................................CTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCATCATCAGAAATGTGGAAG...............................................................................................................................................................................................................................................................................GTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCCT-TCTTTTCAACTGGCGTGGACAGGAGATAAATGGTGTTTGTACAT-CTCTTCTCATTG.......................................................TTTGTACATCTCTTCTCATGGTTTTATATTATTTTATAGGTACCCTTTAAAACTTGTGTTCCNTTACTG-AAGCTTGATTTGAAATTCTAGACTTCAGTGGGAACTTCTGCTTTCTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302316" ref_strand="+" ref_description="SGN-E302316 [cLEW-19-J4]">
      <seq>taattttggacatggaactttgataaaccacctgtgcacgtgtatacagttatttaaataccttacctttatcttcttttattttttactttctgtgcatttcataaggatcttactgtccggcaagtaatagtatgaatcggtcattaactttattctcctgcaggttatttcctttattttttgttgacagttgttgctgcatgtaagggttggattttctggcgcactcctgtggctttgttgtaatgggtagctttcaccagaattcttttccttgctgcatttcttcttctcctttctttctggttaccctgttagtttttctgttaatgttggtagctgctgtactaatatggattgggaggggaaggaaccctattgattcatctgttctggctcgggactggtattgttcttgaaaatgagcaaagtgagatctgaaagggcatcatcagaaatgtggaaggttgcaggcttggcagttgtttctgttctatgtttcactttaagtgagctgtcgccttattcacagatataccccttcttttcaactggcgtggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="87721" stop="83523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87421" g_stop="87166" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87165" i_stop="87092" i_length="74">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87091" g_stop="87040" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="308" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87039" i_stop="85665" i_length="1375">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85664" g_stop="85569" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="404" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85568" i_stop="84334" i_length="1235">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84333" g_stop="84269" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="469" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84268" i_stop="83998" i_length="271">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83997" g_stop="83924" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="543" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83923" i_stop="83846" i_length="78">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83845" g_stop="83823" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="566" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E302316" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87421" e_stop="87166"/>
          <exon e_start="87091" e_stop="87040"/>
          <exon e_start="85664" e_stop="85569"/>
          <exon e_start="84333" e_stop="84269"/>
          <exon e_start="83997" e_stop="83924"/>
          <exon e_start="83845" e_stop="83823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAGGTATGTGCAAACCCACCCTGTTCTTTTTCAACTGAGGCTATTTTAACTAGGACTAATGAAGAACTATTTTGCAGCTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTGGTAAGTTCGCCTTCTGTTTTCTGTATCCTTGAACGTGTGAAAGTTATTGCTCTGAATTTAACTATTTGCAAACTAATTAATGAGGGGAACTTTCAGTATGGTGAACTTCCCATTTTTTCTCCAGAGTCATCTTCATTCCAGAAAATAGCAGTACCTGTTAATTTAATCAGTAAGCTGCCAAAAATCAGCAGTTTGCAAGACACTGCTACTGAGCTTTAGAATGTGGTTGACCAAATAATGATCCTCTTTTGGTGAATAGCAGTTATTTGCTAAGTTGCGCAGACTCTTCACTTCCAATGCCCCACCCGTGTCGGATTTCCCAAAAATCCACTACTTTTGGAGAAACCGACATGTACCCGTTGTCATTTTTGAAGTGTCTTAGCAACATAAGTTATTTGATCCTAGTGCTATTCAAAGACTATAGATTCTTCTGCTCTACACCAAAAGTTGTCACTTGTCATGTATCTCTTTTCTTTTAATATCCGATCAGTAGTGCACCATTCAGTACACTCCTTTATACCTTTGTGGGGTAGAGAAGCTGTTTTTAATAGACTCTCGGCTAAAAAAATGGGAAAAACAGTTTTTACAGAACAGGTTTGAAAAATACAAGAGCAAAAAGATCTACAATGGAACTATCAAAGAAAAGAAAAATATTGACAACAAAATATAAAAGATAAGCGAAGTAAAAGAAACAACAGCAGAGCTAAATTTTAAAGAAAAAGGTAATGATACAACAAGAATTATAGTACTGATAAGTAGAAGAAGGAGAAAATAAGGAACTTCTCCACTTGAATACCAGTTATTTTATTTTCAGTGGAATATATACCCGTGACATGCGCTTAACCCACATATCACGACATCACACACTTTGTGCTAACCTATAAGAACAATGTGTTTTTGTTCTATAATTTAGTATGTGGTGATAAACTATATTAAAATAAACACATCTGATTATCACTTGTTATTAAATTATTTCTGTTTAACTTGTGCTTATGAATTATAGCAAATTTTAGAGTGTGTTTTTTTTATTAAAATATTGTTTTCTAAAATTCTTTCAAAAAATCTGTGCGGCATATGTCTGCTTTGTGGCAAAATCCCTATTCAATTTGTGAATGGCTTTCATGGTTTGTTTGTTGTAGAAGAACATCTACGTAATCCTCATTGTGTATAACTGTTTGAGCTATTATATTCTGTTCCTGCCTGTCAAATTCAATAAAATTGTTAAATGTAGGAGTATTAATTTGCGTACCTATTTGGACTGGTTGTTGTACATCTTGTATAATATTTTGTTGCAGATTTTTAGGCACACGGTAACTCACTGTATTTCTCTTTTTCCATTTCGGTTCTTTAGTCATGCACTTGCTTTTTTGACCAGGTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGGGTATGGACTAAGGCTCTTTGATTACCAATATCTATTTATTTGTTGTTCTTGCATATTCTGTAACCTATCTGATTTAGCAGTTGTTGGTACTTCGCATAGATTACTTTCAGCCTCACATATTCATTTTTAGCTGCAACCAGATTTTATAACACAATCTATTTGATTGTTGTTTTCACATATTCTTTCTTCAATCCATTTGATTTAGGAGTTGTTTGTTCTCTTTATAGATTACTTTGAGCCTCACATTCATTTTTAGCTGCAGTTAGATTTTAATGCACAAACAAGTATATACCTTCGACTTGGAGCCCTAACTGTTTCTTAGTATTTCCTGAGAGGAGCATCTCGTTGAAAGAGAGGGTGTGTTCCCCTGTGAGTAAGGGTAGTTCTTGTAAAATATTTTTCATGCTTAAATGAATACGTATGGTATTTTTAATTTGCTTACAATACTGGTTTTTGGTGTTTAAATTATTGTTGGGAAAATATAAATTTAGACTGTTTCATGGTGGTTTTTTTCTTTGCCACCTCTCCCCACCTTCCTCTTGATAATTGATGAAGTGCAGTTACATGATCCAGATTTATGTAGATCTTTTTGCCTTAGCAGTTCTTTTGCTGGGAGTGTGGCATTTGCATGTTATGGTTAGTATGTTATACACTGGTATTTTTTATACCGCCTCCTCATCAATGTTCACACGTCACAGAGAATTGTTGTCCTGCCATTTTCAGTAATATAATCTTATCTATTGCTACTATGCACCATAAATCTTTACATGGGCACTTCAGTACTTGTGTAATAACTAACGTCTTTTGATCCACCATTTCTTCACAGAATCAGCTGATATAAAAGATTGAGTTATTTTATTTAACAAGGATAGACTTACAAATGTTCAAGAGTTCTCTCTCCCTCTATGTGTGTGTGTGTCCCCAGAGGTGGGTCAGGGGTGTGGAGAAGTGATTTCAAGGAATAGTTTAAACAATAAGATATTCATGGTTGATAGTTTTAGGCGGTGAAACTGCTGCCTCCCCAGAAAGACCAATATTTCATCAGTAATATCGCAGTCGAATGAATTGATTGTTCAACCAATTATCCATTTCTCGTCGAGCTGTGCAAAATTCTAAGTAACAGTTGTCGTAAAGAATTTGCTGTTTAAACTAGGTCTTTTGTGTTCTAATTATTTTATGTGAAGGTTTCCTATTTCAAAATCTATCTTTCTGACCATAATATCTCTGCTATGCAGGACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCTTCATCAGAAATGTGGAAGGTACTAACTCATCTTTCCTCGGTGCATCTCTAGCATTTTCTGTATGTCGATTGGAATTGTTATTTGCAGACTGCAGAAAACTTCTGTGGCATGTCATATCATGTCATACTGAGATCTTTTACAATTCTAGTCTTAAGAATTGAGCTTGAATAAAGTGCACTTTTCTTTCTCTTCTTTTCTTCCTTGTTAAAATTCAGCTCTCATGACACAGATTGTGATAGATTATTTTATTGTGAAGTTTGATTTTTTATTATATGTTTGTCCAATGAAGGTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCGTATGTCTTCTGCTGGTCTCATGAGATGTCTTTTGTTTTGACTGCATAAGTTTCTAAGAGATTATGCTTTTAATGCAGCTTCTTTTCAACTGGCGTGGACA</genome_strand>
        <mrna_strand>TAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAG..........................................................................CTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCATCATCAGAAATGTGGAAG...............................................................................................................................................................................................................................................................................GTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCC..............................................................................CTTCTTTTCAACTGGCGTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456737" ref_strand="+" ref_description="SGN-E456737 [cSTS-30-K12]">
      <seq>cccgtcagggactgcactttttggcgtctattggaatggcttttgatttccacataacgatttgttgattttgagaatcttttgtgtgggcataatgtatgcagtcccgaaccatgttgagatgtattcgagtaagagtgggaaatggaagaagctgaaaaatgagatgatttttcatattcttgagtttacttgcaatgtgattgttaaaggggtggcgtattggttggtttgtatgcctgataagttcggatcgcgtgctgtgtttgtgcgatttgatgtggggaaactagtttttgagaagttaccttcgataggaaggcgtaagaagcatcaatatcttgtggaattggagggttctctttgtatgttagactgggatcataaagatgattgtcatatggatgtttgggtaatggatgatgtagatggttggagtaagaaatacagtgttggaccgttagttgggtttgacctaatattgggctgtttgaggaatggtgacattgtagctaagaatgaaaatggagtgatattcttgtgtgatcccataactagttcaatcaaggaaaaattcagctttgataataataaggatggatcatatgtgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="91069" stop="89844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90768" g_stop="90144" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E456737" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90768" e_stop="90144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCCGGAACTGCACTTTTTGGCGTCTATTGGAATGGGTTTTGATTACCAACATAACGAATTATTGATCTTGAGAATCTTTTGTGTGGGCATAATGTTTGCAGTCCCGAACCACATTTGAGGTTTATTCGAGTGAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGTTTTTTCATATTGTTGAGTTAACTTGCAATGTGATTGTTAAA-AGATGGCGTATTGGTTGGTTTGTATGCCTGGTAAGTTCGGATCACGTGCTGTGTTAGTGCGATTTGATGTGGGGAAACTAGTGTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGCAGGGTTCTCTTTGTATGTAAGACTGGGATCATAAAGATGATTGTCATATGGATGGATGTTTGGGTAATGGATGATGTTGATGGTTGGAGTAAGAAATACAGCGTTGGACCATTAATCGGATTTTTTGACCGAATCTTGGGTTGTTTGAGGAATGGTGACATTGTAGCTAAGAATG-AAATGGAGTGATATCCTTGTGTGAACCCATATCTAATTCAGTCAAGGAAAATTTCAGCATTGATAATAGCAATGATGAATCATATGTGATTGTTGA</genome_strand>
        <mrna_strand>CCCGTCAGGGACTGCACTTTTTGGCGTCTATTGGAATGGCTTTTGATTTCC-ACATAACGATTTGTTGATTTTGAGAATCTTTTGTGTGGGCATAATGTATGCAGTCCCGAACCA-TGTTGAGATGTATTCGAGTAAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGATTTTTCATATTCTTGAGTTTACTTGCAATGTGATTGTTAAAGGGGTGGCGTATTGGTTGGTTTGTATGCCTGATAAGTTCGGATCGCGTGCTGTGTTTGTGCGATTTGATGTGGGGAAACTAGTTTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGGAGGGTTCTCTTTGTATGTTAGACTGGGATCATAAAGATGATTGTC--AT--ATGGATGTTTGGGTAATGGATGATGTAGATGGTTGGAGTAAGAAATACAGTGTTGGACCGTTAGTTGG---GTTTGACCTAATATTGGGCTGTTTGAGGAATGGTGACATTGTAGCTAAGAATGAAAATGGAGTGATATTCTTGTGTGATCCCATAACTAGTTCAATCAAGGAAAAATTCAGCTTTGATAATAATAAGGATGGATCATATGTGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426394" ref_strand="+" ref_description="SGN-E426394 [STM-46-D5]">
      <seq>cccgtcagggactgcactttttggcgtctattggaatggcttttgatttccacataacgatttgttgattttgagaatcttttgtgtgggcataatgtatgcagtcccgaaccatgttgagatgtattcgagtaagagtgggaaatggaagaagctgaaaaatgagatgatttttcatattcttgagtttacttgcaatgtgattgttaaaggggtggcgtattggttggtttgtatgcctgataagttcggatcgcgtgctgtgtttgtgcgatttgatgtggggaaactagtttttgagaagttaccttcgataggaaggcgtaagaagcatcaatatcttgtggaattggagggttctctttgtatgttagactgggatcataaagatgattgtcatatggatgtttgggtaatggatgatgtagatggttggagtaagaaatacagtgttggaccgttagttgggtttgacctaatattgggctgtttgaggaatggtgacattgtagctaagaatgaaaatggagtgatattcttgtgtgatcccataactagttcaatcaaagaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="91069" stop="89887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90768" g_stop="90186" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E426394" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90768" e_stop="90186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCCGGAACTGCACTTTTTGGCGTCTATTGGAATGGGTTTTGATTACCAACATAACGAATTATTGATCTTGAGAATCTTTTGTGTGGGCATAATGTTTGCAGTCCCGAACCACATTTGAGGTTTATTCGAGTGAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGTTTTTTCATATTGTTGAGTTAACTTGCAATGTGATTGTTAAA-AGATGGCGTATTGGTTGGTTTGTATGCCTGGTAAGTTCGGATCACGTGCTGTGTTAGTGCGATTTGATGTGGGGAAACTAGTGTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGCAGGGTTCTCTTTGTATGTAAGACTGGGATCATAAAGATGATTGTCATATGGATGGATGTTTGGGTAATGGATGATGTTGATGGTTGGAGTAAGAAATACAGCGTTGGACCATTAATCGGATTTTTTGACCGAATCTTGGGTTGTTTGAGGAATGGTGACATTGTAGCTAAGAATG-AAATGGAGTGATATCCTTGTGTGAACCCATATCTAATTCAGTCAAGGAAAATTT</genome_strand>
        <mrna_strand>CCCGTCAGGGACTGCACTTTTTGGCGTCTATTGGAATGGCTTTTGATTTCC-ACATAACGATTTGTTGATTTTGAGAATCTTTTGTGTGGGCATAATGTATGCAGTCCCGAACCA-TGTTGAGATGTATTCGAGTAAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGATTTTTCATATTCTTGAGTTTACTTGCAATGTGATTGTTAAAGGGGTGGCGTATTGGTTGGTTTGTATGCCTGATAAGTTCGGATCGCGTGCTGTGTTTGTGCGATTTGATGTGGGGAAACTAGTTTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGGAGGGTTCTCTTTGTATGTTAGACTGGGATCATAAAGATGATTGTC--AT--ATGGATGTTTGGGTAATGGATGATGTAGATGGTTGGAGTAAGAAATACAGTGTTGGACCGTTAGTTGG---GTTTGACCTAATATTGGGCTGTTTGAGGAATGGTGACATTGTAGCTAAGAATGAAAATGGAGTGATATTCTTGTGTGATCCCATAACTAGTTCAATCAAAGAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="92647" stop="90648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92347" g_stop="92208" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92207" i_stop="91202" i_length="1006">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91201" g_stop="90962" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="380" r_length="241" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92347" e_stop="92208"/>
          <exon e_start="91201" e_stop="90962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAGAACACTGAAAATTTTTCTTTCTCTGCATAT-TTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGATTGAGTCTGTGTGACTTGTTCCTGTTCTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAGGAAAAGAGAGGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGGTAATGGAAATGAAAATAGGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAATAGGGACCCCTCGCACCGTCGTCGCTCGCTTCGGCTTTGGCTTTGGCAAATCGATCGAGAGATAATTTTTTGGACAAATTTATTTTAATTATTTATTTGATTAATTAAATGGCCAAAAATTATTTTCAATTAATCAGTTGATAACAAAAATTAACCAACCGAAATGTTTTCAACTTTTTAGTTAACCCGACCCGACTCAGGTCCGCACGCGTGACCCGTTTTAAATTCCGTTATATTTAAAAATTTCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTTGTGTCAATTCTGAAAGGGTTGCAACCTTTCAGAATATATTATTCTTGCCTATAAATACCATTCAGTTTTTAGAATATTTACTAACGAATTTTCTGATCTTCCTACTTCTTAAAAAACACATTTTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTTTTGGTATCTATACTCTACTGATTAAGATCATTTTACCCTGGGAGGTTATATTCCAAATCAAACCTCGGATACTAGAGGGGAATAATTTCCTTAAGGGGACACTGTAAATTCAGTGGACTTGATTTTCTTCCTAAATTATCAAAAAGAGTATTCAAGATTCTGGTAAGTTTTACAGATTAAATTATTTTTACAAATAAATTTCTGTTCATCTTATTTACTGGTTCTAAAAATCTCAGTTACTTCGTGTTTCTGAATGATTTATCACAACCAGTAATTTCTGATTTTCTTAACACAGATTGGCAACAGTTCTTCAGTTCGTCGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAATTTCTGTGGACTCGGATTAATTCTTGTATT-TTTAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTA-AACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTC-AAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="92592" stop="90658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92292" g_stop="92208" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92207" i_stop="91202" i_length="1006">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91201" g_stop="90962" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="326" r_length="241" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92292" e_stop="92208"/>
          <exon e_start="91201" e_stop="90962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTTTCTCTGCATAT-TTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGATTGAGTCTGTGTGACTTGTTCCTGTTCTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAGGAAAAGAGAGGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGGTAATGGAAATGAAAATAGGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAATAGGGACCCCTCGCACCGTCGTCGCTCGCTTCGGCTTTGGCTTTGGCAAATCGATCGAGAGATAATTTTTTGGACAAATTTATTTTAATTATTTATTTGATTAATTAAATGGCCAAAAATTATTTTCAATTAATCAGTTGATAACAAAAATTAACCAACCGAAATGTTTTCAACTTTTTAGTTAACCCGACCCGACTCAGGTCCGCACGCGTGACCCGTTTTAAATTCCGTTATATTTAAAAATTTCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTTGTGTCAATTCTGAAAGGGTTGCAACCTTTCAGAATATATTATTCTTGCCTATAAATACCATTCAGTTTTTAGAATATTTACTAACGAATTTTCTGATCTTCCTACTTCTTAAAAAACACATTTTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTTTTGGTATCTATACTCTACTGATTAAGATCATTTTACCCTGGGAGGTTATATTCCAAATCAAACCTCGGATACTAGAGGGGAATAATTTCCTTAAGGGGACACTGTAAATTCAGTGGACTTGATTTTCTTCCTAAATTATCAAAAAGAGTATTCAAGATTCTGGTAAGTTTTACAGATTAAATTATTTTTACAAATAAATTTCTGTTCATCTTATTTACTGGTTCTAAAAATCTCAGTTACTTCGTGTTTCTGAATGATTTATCACAACCAGTAATTTCTGATTTTCTTAACACAGATTGGCAACAGTTCTTCAGTTCGTCGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAATTTCTGTGGACTCGGATTAATTCTTGTATT-TTTAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAA</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTC-AAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="-" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="92656" stop="90824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92357" g_stop="92214" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92213" i_stop="91208" i_length="1006">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91207" g_stop="91124" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="227" r_length="84" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92357" e_stop="92214"/>
          <exon e_start="91207" e_stop="91124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAGAACACTGAAAATTTTTCTTTCTCTGCATAT-TTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGATTGAGTCTGTGTGACTTGTTCCTGTTCTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAGGAAAAGAGAGGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGGTAATGGAAATGAAAATAGGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAATAGGGACCCCTCGCACCGTCGTCGCTCGCTTCGGCTTTGGCTTTGGCAAATCGATCGAGAGATAATTTTTTGGACAAATTTATTTTAATTATTTATTTGATTAATTAAATGGCCAAAAATTATTTTCAATTAATCAGTTGATAACAAAAATTAACCAACCGAAATGTTTTCAACTTTTTAGTTAACCCGACCCGACTCAGGTCCGCACGCGTGACCCGTTTTAAATTCCGTTATATTTAAAAATTTCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTTGTGTCAATTCTGAAAGGGTTGCAACCTTTCAGAATATATTATTCTTGCCTATAAATACCATTCAGTTTTTAGAATATTTACTAACGAATTTTCTGATCTTCCTACTTCTTAAAAAACACATTTTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTTTTGGTATCTATACTCTACTGATTAAGATCATTTTACCCTGGGAGGTTATATTCCAAATCAAACCTCGGATACTAGAGGGGAATAATTTCCTTAAGGGGACACTGTAAATTCAGTGGACTTGATTTTCTTCCTAAATTATCAAAAAGAGTATTCAAGATTCTGGTAAGTTTTACAGATTAAATTATTTTTACAAATAAATTTCTGTTCATCTTATTTACTGGTTCTAAAAATCTCAGTTACTTCGTGTTTCTGAATGATTTATCACAACCAGTAATTTCTGATTTTCTTAACACAGATTGGCAACAGTTCTTCAGTTCGTCGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTA-AACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTC-AAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538064" ref_strand="+" ref_description="SGN-E538064 [TUS-56-P20]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaatataacggaatttaaaacgggtcacgcgcgcggatccgagtcgggtcgggttaactaaaaagttgaaaacaattcggttaatttctgttatcaactgattaattgaaaataatttttggccatttaannttattaataaataattaaaataatttgtccaaaaaatatctctcgatcatttgccaagtcgaagccgagcgagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0091J18-Lgqd8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0091J18.1" temp_strand="+" temp_description="C02HBa0091J18.1  AC215381.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0091J18 sequenced_by:kribb upload_account_name:korea">
        <position start="90899" stop="92287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91200" g_stop="91987" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="857" r_length="778" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0091J18.1" gen_strand="+" ref_id="SGN-E538064" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0091J18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91200" e_stop="91987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAACTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTTACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTAAAAACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGAAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGTGCGGACCTGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTGGTTAATTTTTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATCAAATAAATAATTAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATTTGCCAAAGCCAAAGCCGAAGCGAGCGA</genome_strand>
        <mrna_strand>TTAAG-ATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACAATTC----GGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAANNTTATTAATAAATAATTAAAAT-AATTTGTCCAAAAAA-TATCTCTCGATC-ATTTGCC-AAGTCGAAGCCG-AGCGAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1104</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="498" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="498" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="498" e_stop="1" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="498" stop="90"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="491" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="491" stop="139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="480" stop="108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="478" stop="107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="476" stop="91"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="474" stop="220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="471" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="470" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="470" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="469" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="469" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="469" stop="8"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="469" stop="19"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="469" stop="31"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="469" stop="55"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="469" stop="191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="468" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="468" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="468" stop="49"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="467" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="462" stop="189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="461" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="458" stop="39"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="457" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="456" stop="68"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="446" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="439" stop="93"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="409" stop="189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACTTCATCTTCATCACCCATCAAACACTTAATTCTTCTCTTAAAATAAACACAAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCCGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTTCCTGGTGATTACGGGTGGGATACCGCTGGACTTTCAGCAGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGTGAAGGTGGACTTGACTACTTGGGCA</gDNA_template>
            <first_frame> *  L  H  L  H  H  P  S  N  T  *  F  F  S  *  N  K  H  K  W  Q  L  L  Q  W  L  F  L  P  L  H  L  L  D  R  Q  S  N  S  H  H  L  P  Q  K  F  L  E  M  E  G  S  L  *  E  R  L  L  P  S  P  P  H  L  A  A  H  G  M  A  L  T  V  L  S  T  W  A  H  S  L  V  S  P  Q  A  T  *  P  V  N  F  L  V  I  T  G  G  I  P  L  D  F  Q  Q  T  L  K  L  L  P  R  T  V  N  L  R  *  S  T  A  D  G  L  C  L  V  L  L  D  V  S  S  L  S  S  W  P  V  M  V  S  S  S  V  R  L  C  G  S  R  P  D  P  R  S  S  V  K  V  D  L  T  T  W  A </first_frame>
            <second_frame>  N  F  I  F  I  T  H  Q  T  L  N  S  S  L  K  I  N  T  N  G  S  C  Y  N  G  S  F  F  P  F  I  C  W  T  G  S  Q  T  L  T  I  C  L  R  N  F  W  K  W  K  D  H  Y  E  K  G  C  C  Q  V  R  P  I  *  Q  P  M  V  W  P  *  P  C  *  V  L  G  P  I  L  W  *  V  P  K  L  L  D  R  *  I  S  W  *  L  R  V  G  Y  R  W  T  F  S  R  P  *  N  F  C  Q  E  P  *  T  *  G  D  P  L  Q  M  G  Y  A  W  C  S  W  M  C  L  P  *  A  L  G  P  *  W  C  Q  V  R  *  G  C  V  V  Q  G  R  I  P  D  L  Q  *  R  W  T  *  L  L  G   </second_frame>
            <third_frame>   T  S  S  S  S  P  I  K  H  L  I  L  L  L  K  *  T  Q  M  A  A  A  T  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="448" stop="2"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQMAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="1" PGL_stop="477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="1" e_stop="477" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71" stop="424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87" stop="471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125" stop="471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161" stop="477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="169" stop="466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="220" stop="462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCCAAGTAGTCAAGTCCACCTTCACTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCTGCTGAAAGTCCAGCGGTATCCCACCCGTAATCACCAGGAAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCGGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAAATTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTTGTGTTTATTTTAAGAGAAGAATTAAGTGTTTGA</gDNA_template>
            <first_frame> C  P  S  S  Q  V  H  L  H  *  R  S  G  I  R  P  *  T  T  Q  P  H  R  T  *  H  H  Y  G  P  R  A  Q  G  R  H  I  Q  E  H  Q  A  *  P  I  C  S  G  S  P  Q  V  H  G  S  W  Q  K  F  Q  G  L  L  K  V  Q  R  Y  P  T  R  N  H  Q  E  I  H  R  S  S  S  L  G  T  H  Q  R  M  G  P  S  T  *  H  G  Q  G  H  T  M  G  C  *  M  G  R  T  W  Q  Q  P  F  S  *  *  S  F  H  F  Q  K  F  L  R  Q  M  V  R  V  *  L  P  V  Q  Q  M  K  G  K  K  E  P  L  *  Q  L  P  F  V  F  I  L  R  E  E  L  S  V  * </first_frame>
            <second_frame>  A  Q  V  V  K  S  T  F  T  E  D  L  G  S  G  L  E  P  H  S  L  T  E  L  D  T  I  T  G  Q  E  L  R  E  D  T  S  K  S  T  K  H  S  P  S  A  V  D  H  L  K  F  T  V  L  G  K  S  F  R  V  C  *  K  S  S  G  I  P  P  V  I  T  R  K  F  T  G  Q  V  A  W  G  L  T  R  E  W  A  Q  V  L  N  T  V  R  A  I  P  W  A  A  R  W  G  G  L  G  N  S  L  S  H  S  D  P  S  I  S  R  N  F  *  G  R  W  *  E  F  D  C  L  S  S  K  *  R  G  R  K  S  H  C  S  S  C  H  L  C  L  F  *  E  K  N  *  V  F   </second_frame>
            <third_frame>   P  K  *  S  S  P  P  S  L  K  I  W  D  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  L  A  T  A  F  L  I  V  I  L  P  F  P  E  I  S  E  A  D  G  E  S  L  T  A  C  P  A  N  E  G  E  E  R  A  I  V  A  A  A  I  C  V  Y  F  K  R  R  I  K  C  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="243" stop="476"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLLDGADLATAFLIVILPFPEISEADGESLTACPANEGEERAIVAAAICVYFKRRIKCL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12" stop="215"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPPSLKIWDPALNHTASPNLTPLRAKSSGKTHPRAPSIAHLQWITSSSRFLAKVSGSAESPAVSHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="3165" PGL_stop="6688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3170" e_stop="3187"/>
            <exon e_start="3309" e_stop="4250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.562"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.562">
            <gDNA_exon_boundary e_start="3170" e_stop="3187" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3188" i_stop="3308" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="3309" e_stop="4250" e_length="942"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3170" stop="3187"/>
              <exon start="3309" stop="3723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225388" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="3187"/>
              <exon start="3309" stop="3744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219886" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="3187"/>
              <exon start="3309" stop="3732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228806" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="3187"/>
              <exon start="3309" stop="3650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225326" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="3187"/>
              <exon start="3309" stop="3574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219838" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3561" stop="3906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3704" stop="4233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3836" stop="4243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3860" stop="4243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3899" stop="4233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3906" stop="4240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3967" stop="4250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGGTTTTTTAATTACC : TCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCTGTGATGA</gDNA_template>
            <first_frame> C  G  F  L  I  T  :  S  L  E  *  K  N  P  L  Y  C  Q  L  I  H  N  N  F  T  *  K  F  K  N  H  F  M  V  F  T  F  R  E  Q  S  L  W  R  R  P  R  R  C  C  L  L  G  L  Q  G  D  Q  Q  G  S  P  M  D  L  F  R  *  Q  W  L  E  Q  R  I  Q  T  *  R  T  *  Q  V  Y  R  S  *  S  P  L  P  *  A  Q  Q  M  P  L  G  L  Q  Q  G  L  M  G  R  S  F  H  L  G  R  V  G  R  Q  P  H  Q  E  V  H  Q  Q  Y  G  N  L  Q  Q  L  P  S  T  Q  L  G  K  P  K  W  P  R  C  F  V  H  E  P  S  L  G  C  P  S  S  Q  V  H  P  R  *  R  S  G  I  R  P  *  T  T  Q  P  H  Q  T  L  H  R  C  G  P  R  A  Q  E  R  H  I  Q  E  H  Q  A  *  P  I  Y  S  G  S  P  R  V  H  G  S  W  Q  R  S  Q  G  L  L  K  V  Q  Q  C  P  I  H  S  H  Q  G  I  H  R  S  S  S  L  G  I  H  Q  R  M  G  P  S  T  *  H  G  Q  G  H  T  M  G  C  *  M  G  Q  T  W  Q  Q  P  F  S  *  *  S  F  H  F  Q  R  F  L  R  Q  R  V  R  V  S  P  P  V  Q  Q  K  K  G  K  K  E  P  L  *  Q  L  P  L  C  L  Y  Q  E  K  S  K  C  L  M  V  N  F  *  S  L  L  *  * </first_frame>
            <second_frame>  V  V  F  *  L  P :   H  W  N  R  K  I  H  Y  I  V  N  S  F  T  T  T  L  H  E  N  L  K  I  I  L  W  Y  S  L  S  G  N  K  V  C  G  E  G  P  G  V  V  V  Y  W  V  C  K  V  I  S  K  V  L  Q  W  T  F  S  G  N  N  G  L  N  K  E  S  K  H  R  E  H  S  K  S  T  V  L  D  L  L  Y  L  E  L  S  K  C  L  W  V  F  S  K  A  *  W  V  E  A  S  T  W  V  E  W  V  D  N  L  T  K  R  S  T  S  N  T  V  T  F  N  S  S  H  Q  H  N  L  A  S  P  N  G  Q  D  A  L  C  M  N  Q  A  W  V  A  Q  V  V  K  S  T  L  A  E  D  L  G  S  G  L  E  P  H  S  L  T  K  L  Y  T  V  A  G  Q  E  L  R  K  D  T  S  K  S  T  K  H  S  P  S  T  V  D  H  L  E  F  T  V  L  G  K  G  L  R  V  C  *  K  S  S  S  V  P  S  I  V  T  R  E  F  T  G  Q  V  A  W  G  F  T  R  E  W  A  Q  V  L  N  T  V  R  A  I  P  W  A  A  R  W  G  R  L  G  N  S  L  S  H  S  D  P  S  I  S  R  D  F  *  G  R  G  *  E  F  H  R  L  S  S  K  R  R  G  R  K  S  H  C  S  S  C  H  C  V  Y  I  K  R  K  V  S  V  *  W  *  T  F  E  V  C  C  D   </second_frame>
            <third_frame>   W  F  F  N  Y   : L  I  G  I  E  K  S  I  I  L  S  T  H  S  Q  Q  L  Y  M  K  I  *  K  S  F  Y  G  I  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  F  T  G  S  A  R  *  S  A  R  F  S  N  G  P  F  P  V  T  M  A  *  T  K  N  P  N  I  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  N  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q  A  Q  M  A  K  M  L  C  A  *  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  W  D  P  A  L  N  H  T  A  S  P  N  F  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  L  A  T  A  F  L  I  V  I  L  P  F  P  E  I  S  E  A  E  G  E  S  F  T  A  C  P  A  K  E  G  E  E  R  A  I  V  A  A  A  I  V  F  I  S  R  E  K  *  V  F  D  G  K  L  L  K  F  A  V  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3601" stop="3936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVEASTWVEWVDNLTKRSTSNTVTFNSSHQHNLASPNGQDALCMNQAWVAQVVKSTLAEDLGSGLEPHSLTKLYTVAGQELRKDTSKSTKHSPSTVDHLEFTVLGKGLRVC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3183" stop="3187"/>
                    <exon start="3309" stop="3600"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPHWNRKIHYIVNSFTTTLHENLKIILWYSLSGNKVCGEGPGVVVYWVCKVISKVLQWTFSGNNGLNKESKHREHSKSTVLDLLYLELSKCLWVFSKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3989" stop="4213"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLLDGADLATAFLIVILPFPEISEAEGESFTACPAKEGEERAIVAAAIVFISREK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3165" e_stop="3187"/>
            <exon e_start="3311" e_stop="4250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.609"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.609">
            <gDNA_exon_boundary e_start="3165" e_stop="3187" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3188" i_stop="3310" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3311" e_stop="4250" e_length="940"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3165" stop="3187"/>
              <exon start="3311" stop="3989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735613" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3165" stop="3187"/>
              <exon start="3311" stop="3658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234902" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3165" stop="3187"/>
              <exon start="3311" stop="3558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234806" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3561" stop="3906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3704" stop="4233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3836" stop="4243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3860" stop="4243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3899" stop="4233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3906" stop="4240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3967" stop="4250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTACTGTGGTTTTTTAATTACC : ATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCTGTGATGA</gDNA_template>
            <first_frame> F  T  V  V  F  *  L  P :   L  E  *  K  N  P  L  Y  C  Q  L  I  H  N  N  F  T  *  K  F  K  N  H  F  M  V  F  T  F  R  E  Q  S  L  W  R  R  P  R  R  C  C  L  L  G  L  Q  G  D  Q  Q  G  S  P  M  D  L  F  R  *  Q  W  L  E  Q  R  I  Q  T  *  R  T  *  Q  V  Y  R  S  *  S  P  L  P  *  A  Q  Q  M  P  L  G  L  Q  Q  G  L  M  G  R  S  F  H  L  G  R  V  G  R  Q  P  H  Q  E  V  H  Q  Q  Y  G  N  L  Q  Q  L  P  S  T  Q  L  G  K  P  K  W  P  R  C  F  V  H  E  P  S  L  G  C  P  S  S  Q  V  H  P  R  *  R  S  G  I  R  P  *  T  T  Q  P  H  Q  T  L  H  R  C  G  P  R  A  Q  E  R  H  I  Q  E  H  Q  A  *  P  I  Y  S  G  S  P  R  V  H  G  S  W  Q  R  S  Q  G  L  L  K  V  Q  Q  C  P  I  H  S  H  Q  G  I  H  R  S  S  S  L  G  I  H  Q  R  M  G  P  S  T  *  H  G  Q  G  H  T  M  G  C  *  M  G  Q  T  W  Q  Q  P  F  S  *  *  S  F  H  F  Q  R  F  L  R  Q  R  V  R  V  S  P  P  V  Q  Q  K  K  G  K  K  E  P  L  *  Q  L  P  L  C  L  Y  Q  E  K  S  K  C  L  M  V  N  F  *  S  L  L  *  * </first_frame>
            <second_frame>  L  L  W  F  F  N  Y   : H  W  N  R  K  I  H  Y  I  V  N  S  F  T  T  T  L  H  E  N  L  K  I  I  L  W  Y  S  L  S  G  N  K  V  C  G  E  G  P  G  V  V  V  Y  W  V  C  K  V  I  S  K  V  L  Q  W  T  F  S  G  N  N  G  L  N  K  E  S  K  H  R  E  H  S  K  S  T  V  L  D  L  L  Y  L  E  L  S  K  C  L  W  V  F  S  K  A  *  W  V  E  A  S  T  W  V  E  W  V  D  N  L  T  K  R  S  T  S  N  T  V  T  F  N  S  S  H  Q  H  N  L  A  S  P  N  G  Q  D  A  L  C  M  N  Q  A  W  V  A  Q  V  V  K  S  T  L  A  E  D  L  G  S  G  L  E  P  H  S  L  T  K  L  Y  T  V  A  G  Q  E  L  R  K  D  T  S  K  S  T  K  H  S  P  S  T  V  D  H  L  E  F  T  V  L  G  K  G  L  R  V  C  *  K  S  S  S  V  P  S  I  V  T  R  E  F  T  G  Q  V  A  W  G  F  T  R  E  W  A  Q  V  L  N  T  V  R  A  I  P  W  A  A  R  W  G  R  L  G  N  S  L  S  H  S  D  P  S  I  S  R  D  F  *  G  R  G  *  E  F  H  R  L  S  S  K  R  R  G  R  K  S  H  C  S  S  C  H  C  V  Y  I  K  R  K  V  S  V  *  W  *  T  F  E  V  C  C  D   </second_frame>
            <third_frame>   Y  C  G  F  L  I  T  :  I  G  I  E  K  S  I  I  L  S  T  H  S  Q  Q  L  Y  M  K  I  *  K  S  F  Y  G  I  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  F  T  G  S  A  R  *  S  A  R  F  S  N  G  P  F  P  V  T  M  A  *  T  K  N  P  N  I  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  N  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q  A  Q  M  A  K  M  L  C  A  *  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  W  D  P  A  L  N  H  T  A  S  P  N  F  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  L  A  T  A  F  L  I  V  I  L  P  F  P  E  I  S  E  A  E  G  E  S  F  T  A  C  P  A  K  E  G  E  E  R  A  I  V  A  A  A  I  V  F  I  S  R  E  K  *  V  F  D  G  K  L  L  K  F  A  V  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3601" stop="3936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVEASTWVEWVDNLTKRSTSNTVTFNSSHQHNLASPNGQDALCMNQAWVAQVVKSTLAEDLGSGLEPHSLTKLYTVAGQELRKDTSKSTKHSPSTVDHLEFTVLGKGLRVC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3166" stop="3187"/>
                    <exon start="3311" stop="3600"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLWFFNYHWNRKIHYIVNSFTTTLHENLKIILWYSLSGNKVCGEGPGVVVYWVCKVISKVLQWTFSGNNGLNKESKHREHSKSTVLDLLYLELSKCLWVFSKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3989" stop="4213"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLLDGADLATAFLIVILPFPEISEAEGESFTACPAKEGEERAIVAAAIVFISREK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="3170" e_stop="3187"/>
            <exon e_start="3309" e_stop="4197"/>
            <exon e_start="6647" e_stop="6688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.562"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.562">
            <gDNA_exon_boundary e_start="3170" e_stop="3187" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3188" i_stop="3308" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="3309" e_stop="4197" e_length="889"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4198" i_stop="6646" i_length="2449"/>
          </intron>
          <exon e_serial="3" e_score="0.919">
            <gDNA_exon_boundary e_start="6647" e_stop="6688" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3170" stop="3187"/>
              <exon start="3309" stop="3723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225388" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="3187"/>
              <exon start="3309" stop="3744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219886" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="3187"/>
              <exon start="3309" stop="3732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228806" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="3187"/>
              <exon start="3309" stop="3650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225326" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="3187"/>
              <exon start="3309" stop="3574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219838" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3561" stop="3906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3563" stop="4197"/>
              <exon start="6647" stop="6688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3663" stop="4197"/>
              <exon start="6647" stop="6683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468417" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3686" stop="4197"/>
              <exon start="6647" stop="6688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472688" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGGTTTTTTAATTACC : TCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTAT : AAATGTAAGTGTTTGATGGTATGAGATATTGTTGAAGTTGGC</gDNA_template>
            <first_frame> C  G  F  L  I  T  :  S  L  E  *  K  N  P  L  Y  C  Q  L  I  H  N  N  F  T  *  K  F  K  N  H  F  M  V  F  T  F  R  E  Q  S  L  W  R  R  P  R  R  C  C  L  L  G  L  Q  G  D  Q  Q  G  S  P  M  D  L  F  R  *  Q  W  L  E  Q  R  I  Q  T  *  R  T  *  Q  V  Y  R  S  *  S  P  L  P  *  A  Q  Q  M  P  L  G  L  Q  Q  G  L  M  G  R  S  F  H  L  G  R  V  G  R  Q  P  H  Q  E  V  H  Q  Q  Y  G  N  L  Q  Q  L  P  S  T  Q  L  G  K  P  K  W  P  R  C  F  V  H  E  P  S  L  G  C  P  S  S  Q  V  H  P  R  *  R  S  G  I  R  P  *  T  T  Q  P  H  Q  T  L  H  R  C  G  P  R  A  Q  E  R  H  I  Q  E  H  Q  A  *  P  I  Y  S  G  S  P  R  V  H  G  S  W  Q  R  S  Q  G  L  L  K  V  Q  Q  C  P  I  H  S  H  Q  G  I  H  R  S  S  S  L  G  I  H  Q  R  M  G  P  S  T  *  H  G  Q  G  H  T  M  G  C  *  M  G  Q  T  W  Q  Q  P  F  S  *  *  S  F  H  F  Q  R  F  L  R  Q  R  V  R  V  S  P  P  V  Q  Q  K  K  G  K  K  E  P  L  *  Q  L  P  L  C  L   : *  M  *  V  F  D  G  M  R  Y  C  *  S  W  </first_frame>
            <second_frame>  V  V  F  *  L  P :   H  W  N  R  K  I  H  Y  I  V  N  S  F  T  T  T  L  H  E  N  L  K  I  I  L  W  Y  S  L  S  G  N  K  V  C  G  E  G  P  G  V  V  V  Y  W  V  C  K  V  I  S  K  V  L  Q  W  T  F  S  G  N  N  G  L  N  K  E  S  K  H  R  E  H  S  K  S  T  V  L  D  L  L  Y  L  E  L  S  K  C  L  W  V  F  S  K  A  *  W  V  E  A  S  T  W  V  E  W  V  D  N  L  T  K  R  S  T  S  N  T  V  T  F  N  S  S  H  Q  H  N  L  A  S  P  N  G  Q  D  A  L  C  M  N  Q  A  W  V  A  Q  V  V  K  S  T  L  A  E  D  L  G  S  G  L  E  P  H  S  L  T  K  L  Y  T  V  A  G  Q  E  L  R  K  D  T  S  K  S  T  K  H  S  P  S  T  V  D  H  L  E  F  T  V  L  G  K  G  L  R  V  C  *  K  S  S  S  V  P  S  I  V  T  R  E  F  T  G  Q  V  A  W  G  F  T  R  E  W  A  Q  V  L  N  T  V  R  A  I  P  W  A  A  R  W  G  R  L  G  N  S  L  S  H  S  D  P  S  I  S  R  D  F  *  G  R  G  *  E  F  H  R  L  S  S  K  R  R  G  R  K  S  H  C  S  S  C  H  C  V  Y  :  K  C  K  C  L  M  V  *  D  I  V  E  V  G </second_frame>
            <third_frame>   W  F  F  N  Y   : L  I  G  I  E  K  S  I  I  L  S  T  H  S  Q  Q  L  Y  M  K  I  *  K  S  F  Y  G  I  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  F  T  G  S  A  R  *  S  A  R  F  S  N  G  P  F  P  V  T  M  A  *  T  K  N  P  N  I  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  N  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q  A  Q  M  A  K  M  L  C  A  *  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  W  D  P  A  L  N  H  T  A  S  P  N  F  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  L  A  T  A  F  L  I  V  I  L  P  F  P  E  I  S  E  A  E  G  E  S  F  T  A  C  P  A  K  E  G  E  E  R  A  I  V  A  A  A  I  V  F  I :   N  V  S  V  *  W  Y  E  I  L  L  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3601" stop="3936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVEASTWVEWVDNLTKRSTSNTVTFNSSHQHNLASPNGQDALCMNQAWVAQVVKSTLAEDLGSGLEPHSLTKLYTVAGQELRKDTSKSTKHSPSTVDHLEFTVLGKGLRVC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3183" stop="3187"/>
                    <exon start="3309" stop="3600"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPHWNRKIHYIVNSFTTTLHENLKIILWYSLSGNKVCGEGPGVVVYWVCKVISKVLQWTFSGNNGLNKESKHREHSKSTVLDLLYLELSKCLWVFSKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3989" stop="4197"/>
                    <exon start="6647" stop="6662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLLDGADLATAFLIVILPFPEISEAEGESFTACPAKEGEERAIVAAAIVFINVSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="3172" e_stop="3187"/>
            <exon e_start="3309" e_stop="3704"/>
            <exon e_start="3755" e_stop="4250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.562"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.968"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.562">
            <gDNA_exon_boundary e_start="3172" e_stop="3187" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3188" i_stop="3308" i_length="121"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="3309" e_stop="3704" e_length="396"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3705" i_stop="3754" i_length="50"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="3755" e_stop="4250" e_length="496"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="3187"/>
              <exon start="3309" stop="3650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225326" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3172" stop="3187"/>
              <exon start="3309" stop="3574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219838" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3563" stop="3704"/>
              <exon start="3755" stop="4221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347738" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3836" stop="4243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3860" stop="4243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3899" stop="4233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3906" stop="4240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3967" stop="4250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTTTTTTAATTACC : TCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAG : TAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCTGTGATGA</gDNA_template>
            <first_frame> W  F  F  N  Y   : L  I  G  I  E  K  S  I  I  L  S  T  H  S  Q  Q  L  Y  M  K  I  *  K  S  F  Y  G  I  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  F  T  G  S  A  R  *  S  A  R  F  S  N  G  P  F  P  V  T  M  A  *  T  K  N  P  N  I  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  N  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q   : V  V  K  S  T  L  A  E  D  L  G  S  G  L  E  P  H  S  L  T  K  L  Y  T  V  A  G  Q  E  L  R  K  D  T  S  K  S  T  K  H  S  P  S  T  V  D  H  L  E  F  T  V  L  G  K  G  L  R  V  C  *  K  S  S  S  V  P  S  I  V  T  R  E  F  T  G  Q  V  A  W  G  F  T  R  E  W  A  Q  V  L  N  T  V  R  A  I  P  W  A  A  R  W  G  R  L  G  N  S  L  S  H  S  D  P  S  I  S  R  D  F  *  G  R  G  *  E  F  H  R  L  S  S  K  R  R  G  R  K  S  H  C  S  S  C  H  C  V  Y  I  K  R  K  V  S  V  *  W  *  T  F  E  V  C  C  D   </first_frame>
            <second_frame>  G  F  L  I  T  :  S  L  E  *  K  N  P  L  Y  C  Q  L  I  H  N  N  F  T  *  K  F  K  N  H  F  M  V  F  T  F  R  E  Q  S  L  W  R  R  P  R  R  C  C  L  L  G  L  Q  G  D  Q  Q  G  S  P  M  D  L  F  R  *  Q  W  L  E  Q  R  I  Q  T  *  R  T  *  Q  V  Y  R  S  *  S  P  L  P  *  A  Q  Q  M  P  L  G  L  Q  Q  G  L  M  G  R  S  F  H  L  G  R  V  G  R  Q  P  H  Q  E  V  H  Q  Q  Y  G  N  L  Q  Q  L  P  S  T  Q  L  G  K  :  *  S  S  P  P  S  L  K  I  W  D  P  A  L  N  H  T  A  S  P  N  F  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  L  A  T  A  F  L  I  V  I  L  P  F  P  E  I  S  E  A  E  G  E  S  F  T  A  C  P  A  K  E  G  E  E  R  A  I  V  A  A  A  I  V  F  I  S  R  E  K  *  V  F  D  G  K  L  L  K  F  A  V  M  </second_frame>
            <third_frame>   V  F  *  L  P :   H  W  N  R  K  I  H  Y  I  V  N  S  F  T  T  T  L  H  E  N  L  K  I  I  L  W  Y  S  L  S  G  N  K  V  C  G  E  G  P  G  V  V  V  Y  W  V  C  K  V  I  S  K  V  L  Q  W  T  F  S  G  N  N  G  L  N  K  E  S  K  H  R  E  H  S  K  S  T  V  L  D  L  L  Y  L  E  L  S  K  C  L  W  V  F  S  K  A  *  W  V  E  A  S  T  W  V  E  W  V  D  N  L  T  K  R  S  T  S  N  T  V  T  F  N  S  S  H  Q  H  N  L  A  S :   S  Q  V  H  P  R  *  R  S  G  I  R  P  *  T  T  Q  P  H  Q  T  L  H  R  C  G  P  R  A  Q  E  R  H  I  Q  E  H  Q  A  *  P  I  Y  S  G  S  P  R  V  H  G  S  W  Q  R  S  Q  G  L  L  K  V  Q  Q  C  P  I  H  S  H  Q  G  I  H  R  S  S  S  L  G  I  H  Q  R  M  G  P  S  T  *  H  G  Q  G  H  T  M  G  C  *  M  G  Q  T  W  Q  Q  P  F  S  *  *  S  F  H  F  Q  R  F  L  R  Q  R  V  R  V  S  P  P  V  Q  Q  K  K  G  K  K  E  P  L  *  Q  L  P  L  C  L  Y  Q  E  K  S  K  C  L  M  V  N  F  *  S  L  L  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3183" stop="3187"/>
                    <exon start="3309" stop="3600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPHWNRKIHYIVNSFTTTLHENLKIILWYSLSGNKVCGEGPGVVVYWVCKVISKVLQWTFSGNNGLNKESKHREHSKSTVLDLLYLELSKCLWVFSKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3989" stop="4213"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLLDGADLATAFLIVILPFPEISEAEGESFTACPAKEGEERAIVAAAIVFISREK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3671" stop="3704"/>
                    <exon start="3755" stop="3936"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTAPINTTWQVVKSTLAEDLGSGLEPHSLTKLYTVAGQELRKDTSKSTKHSPSTVDHLEFTVLGKGLRVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="3305" e_stop="4250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="3305" e_stop="4250" e_length="946"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3305" stop="3644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3561" stop="3906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3704" stop="4233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3836" stop="4243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3860" stop="4243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3899" stop="4233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3906" stop="4240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3967" stop="4250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCATTGGAATAGAAAAATCCATTATATTGTCAACTCATTCACAACAACTTTACATGAAAATTTAAAAATCATTTTATGGTATTCACTTTCCGGGAACAAAGTTTGTGGCGAAGGCCCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGACCTTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACAGCTCCCATCAACACAACTTGGCAAGCCCAAATGGCCAAGATGCTTTGTGCATGAACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTACAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCTGCTGAAAGTCCAGCAGTGTCCCATCCATAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGATTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATTGTGTTTATATCAAGAGAAAAGTAAGTGTTTGATGGTAAACTTTTGAAGTTTGCTGTGATGA</gDNA_template>
            <first_frame> K  I  I  G  I  E  K  S  I  I  L  S  T  H  S  Q  Q  L  Y  M  K  I  *  K  S  F  Y  G  I  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  F  T  G  S  A  R  *  S  A  R  F  S  N  G  P  F  P  V  T  M  A  *  T  K  N  P  N  I  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  N  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  N  T  T  W  Q  A  Q  M  A  K  M  L  C  A  *  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  W  D  P  A  L  N  H  T  A  S  P  N  F  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  L  A  T  A  F  L  I  V  I  L  P  F  P  E  I  S  E  A  E  G  E  S  F  T  A  C  P  A  K  E  G  E  E  R  A  I  V  A  A  A  I  V  F  I  S  R  E  K  *  V  F  D  G  K  L  L  K  F  A  V  M  </first_frame>
            <second_frame>  K  S  L  E  *  K  N  P  L  Y  C  Q  L  I  H  N  N  F  T  *  K  F  K  N  H  F  M  V  F  T  F  R  E  Q  S  L  W  R  R  P  R  R  C  C  L  L  G  L  Q  G  D  Q  Q  G  S  P  M  D  L  F  R  *  Q  W  L  E  Q  R  I  Q  T  *  R  T  *  Q  V  Y  R  S  *  S  P  L  P  *  A  Q  Q  M  P  L  G  L  Q  Q  G  L  M  G  R  S  F  H  L  G  R  V  G  R  Q  P  H  Q  E  V  H  Q  Q  Y  G  N  L  Q  Q  L  P  S  T  Q  L  G  K  P  K  W  P  R  C  F  V  H  E  P  S  L  G  C  P  S  S  Q  V  H  P  R  *  R  S  G  I  R  P  *  T  T  Q  P  H  Q  T  L  H  R  C  G  P  R  A  Q  E  R  H  I  Q  E  H  Q  A  *  P  I  Y  S  G  S  P  R  V  H  G  S  W  Q  R  S  Q  G  L  L  K  V  Q  Q  C  P  I  H  S  H  Q  G  I  H  R  S  S  S  L  G  I  H  Q  R  M  G  P  S  T  *  H  G  Q  G  H  T  M  G  C  *  M  G  Q  T  W  Q  Q  P  F  S  *  *  S  F  H  F  Q  R  F  L  R  Q  R  V  R  V  S  P  P  V  Q  Q  K  K  G  K  K  E  P  L  *  Q  L  P  L  C  L  Y  Q  E  K  S  K  C  L  M  V  N  F  *  S  L  L  *  * </second_frame>
            <third_frame>   N  H  W  N  R  K  I  H  Y  I  V  N  S  F  T  T  T  L  H  E  N  L  K  I  I  L  W  Y  S  L  S  G  N  K  V  C  G  E  G  P  G  V  V  V  Y  W  V  C  K  V  I  S  K  V  L  Q  W  T  F  S  G  N  N  G  L  N  K  E  S  K  H  R  E  H  S  K  S  T  V  L  D  L  L  Y  L  E  L  S  K  C  L  W  V  F  S  K  A  *  W  V  E  A  S  T  W  V  E  W  V  D  N  L  T  K  R  S  T  S  N  T  V  T  F  N  S  S  H  Q  H  N  L  A  S  P  N  G  Q  D  A  L  C  M  N  Q  A  W  V  A  Q  V  V  K  S  T  L  A  E  D  L  G  S  G  L  E  P  H  S  L  T  K  L  Y  T  V  A  G  Q  E  L  R  K  D  T  S  K  S  T  K  H  S  P  S  T  V  D  H  L  E  F  T  V  L  G  K  G  L  R  V  C  *  K  S  S  S  V  P  S  I  V  T  R  E  F  T  G  Q  V  A  W  G  F  T  R  E  W  A  Q  V  L  N  T  V  R  A  I  P  W  A  A  R  W  G  R  L  G  N  S  L  S  H  S  D  P  S  I  S  R  D  F  *  G  R  G  *  E  F  H  R  L  S  S  K  R  R  G  R  K  S  H  C  S  S  C  H  C  V  Y  I  K  R  K  V  S  V  *  W  *  T  F  E  V  C  C  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3601" stop="3936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVEASTWVEWVDNLTKRSTSNTVTFNSSHQHNLASPNGQDALCMNQAWVAQVVKSTLAEDLGSGLEPHSLTKLYTVAGQELRKDTSKSTKHSPSTVDHLEFTVLGKGLRVC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3307" stop="3600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHWNRKIHYIVNSFTTTLHENLKIILWYSLSGNKVCGEGPGVVVYWVCKVISKVLQWTFSGNNGLNKESKHREHSKSTVLDLLYLELSKCLWVFSKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3989" stop="4213"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLLDGADLATAFLIVILPFPEISEAEGESFTACPAKEGEERAIVAAAIVFISREK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="5728" e_stop="6683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="5728" e_stop="6683" e_length="956"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5728" stop="6018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5733" stop="6265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5764" stop="6527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5774" stop="6204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5808" stop="6334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6400" stop="6675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6409" stop="6683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280838" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATAAGATGTAAGAAAAATCAATTCTATTGTTCAAGTTAACTCACAAATTACAACTTTACATGGTCAACAAATGATCAGAAACTTGAGAATGTTTTAAGATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAGGACCAGGCGTTGTTGTTTACTGGGTCTGCAAGGTGATCAGCAAGGTTCTCCAATGGTCCCTTTCCAGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTTCCACCGGGGTAGAGTGGGTCTACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGATCCAGCCTTGAACCAGACAGCCTCACCAAACTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCTGGATCTGCTGAAAGTCCAGCGGTGTCCCACCCGTAGTCACCAGGGAATTCACCATTCAAGTAGCTAGGGGACTCACCAGAGAATGGACCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTTGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCTGTGATTTCTGAGGCAGATGGTAAGAGTTTCACTGCTTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGGTATGAGATATTGTTGAAG</gDNA_template>
            <first_frame> E  *  D  V  R  K  I  N  S  I  V  Q  V  N  S  Q  I  T  T  L  H  G  Q  Q  M  I  R  N  L  R  M  F  *  D  F  Y  F  P  G  T  K  F  V  A  *  D  Q  A  L  L  F  T  G  S  A  R  *  S  A  R  F  S  N  G  P  F  P  V  T  M  A  *  T  K  N  P  N  I  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  N  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  M  S  T  T  W  Q  A  Q  M  A  K  M  L  C  A  W  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  *  D  P  A  L  N  Q  T  A  S  P  N  L  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  F  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  F  A  T  A  F  L  I  V  I  L  P  F  P  V  I  S  E  A  D  G  K  S  F  T  A  C  P  A  K  E  G  E  E  R  A  I  V  A  A  A  M  V  F  I  S  R  E  M  *  V  F  D  G  M  R  Y  C  *   </first_frame>
            <second_frame>  N  K  M  *  E  K  S  I  L  L  F  K  L  T  H  K  L  Q  L  Y  M  V  N  K  *  S  E  T  *  E  C  F  K  I  F  I  F  R  G  Q  S  L  W  R  R  T  R  R  C  C  L  L  G  L  Q  G  D  Q  Q  G  S  P  M  V  P  F  Q  *  Q  W  L  E  Q  R  I  Q  T  *  R  T  *  Q  V  Y  R  S  *  S  P  L  P  *  A  Q  Q  M  P  Q  G  L  Q  Q  G  L  M  G  R  S  F  H  R  G  R  V  G  L  Q  P  H  Q  E  V  H  Q  Q  Y  G  N  L  Q  R  L  P  *  V  Q  L  G  K  P  R  W  P  R  C  S  V  H  G  P  S  L  G  C  P  S  S  Q  V  H  P  H  *  R  F  E  I  Q  P  *  T  R  Q  P  H  Q  T  *  H  H  Y  G  P  R  A  Q  G  R  H  I  Q  E  H  Q  A  *  P  I  C  S  G  S  P  R  V  H  G  S  W  Q  R  F  L  D  L  L  K  V  Q  R  C  P  T  R  S  H  Q  G  I  H  H  S  S  S  *  G  T  H  Q  R  M  D  P  S  T  *  H  G  Q  G  H  T  M  G  C  *  M  G  L  T  L  R  Q  P  F  S  *  *  S  F  H  F  L  *  F  L  R  Q  M  V  R  V  S  L  L  V  Q  Q  K  K  G  K  K  E  P  L  *  Q  L  P  W  C  L  Y  Q  E  K  C  K  C  L  M  V  *  D  I  V  E  </second_frame>
            <third_frame>   I  R  C  K  K  N  Q  F  Y  C  S  S  *  L  T  N  Y  N  F  T  W  S  T  N  D  Q  K  L  E  N  V  L  R  F  L  F  S  G  D  K  V  C  G  V  G  P  G  V  V  V  Y  W  V  C  K  V  I  S  K  V  L  Q  W  S  L  S  S  N  N  G  L  N  K  E  S  K  H  R  E  H  S  K  S  T  V  L  N  L  L  Y  L  E  L  S  K  C  L  R  V  F  S  K  A  *  W  V  E  A  S  T  G  V  E  W  V  Y  N  L  T  K  R  S  T  S  N  T  V  T  F  N  G  S  H  E  Y  N  L  A  S  P  D  G  Q  D  A  L  C  M  D  Q  A  W  V  A  Q  V  V  K  S  T  L  T  E  D  L  R  S  S  L  E  P  D  S  L  T  K  L  D  T  I  T  G  Q  E  L  R  E  D  T  S  K  S  T  K  H  S  P  S  A  V  D  H  L  E  F  T  V  L  G  K  G  F  W  I  C  *  K  S  S  G  V  P  P  V  V  T  R  E  F  T  I  Q  V  A  R  G  L  T  R  E  W  T  Q  V  L  N  T  V  R  A  I  P  W  A  A  R  W  G  *  L  C  D  S  L  S  H  S  D  P  S  I  S  C  D  F  *  G  R  W  *  E  F  H  C  L  S  S  K  R  R  G  R  K  S  H  C  S  S  C  H  G  V  Y  I  K  R  N  V  S  V  *  W  Y  E  I  L  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6042" stop="6377"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVEASTGVEWVYNLTKRSTSNTVTFNGSHEYNLASPDGQDALCMDQAWVAQVVKSTLTEDLRSSLEPDSLTKLDTITGQELREDTSKSTKHSPSAVDHLEFTVLGKGFWIC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5769" stop="6041"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTNYNFTWSTNDQKLENVLRFLFSGDKVCGVGPGVVVYWVCKVISKVLQWSLSSNNGLNKESKHREHSKSTVLNLLYLELSKCLRVFSKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6430" stop="6654"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLLDGADFATAFLIVILPFPVISEADGKSFTACPAKEGEERAIVAAAMVFISREM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="4256" PGL_stop="3222"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4256" e_stop="3222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="4256" e_stop="3222" e_length="1035"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4256" stop="3451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4247" stop="3675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4246" stop="3314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4244" stop="3646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4244" stop="3697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4243" stop="3508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4243" stop="3562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4243" stop="3581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4243" stop="3587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4243" stop="3855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4239" stop="3511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4237" stop="3508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4237" stop="3563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4237" stop="3678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4237" stop="3738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4236" stop="3844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4235" stop="3563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4235" stop="3716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4235" stop="3717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4235" stop="3814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="3399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="3487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="3567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="3584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="3657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="3681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="3704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="3717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3610" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3610" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3609" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3603" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289606" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3595" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3571" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3492" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAACTCATCACAGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTTCATGCACAAAGCATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGAATTTTCATCTTCTAAACCCACAATACGAATCAAACAATAAAACTTTCATTCCAAAAACAAAAGAAACAGAATAG</gDNA_template>
            <first_frame> F  N  S  S  Q  Q  T  S  K  V  Y  H  Q  T  L  T  F  L  L  I  *  T  Q  W  Q  L  L  Q  W  L  F  L  P  L  L  L  L  D  R  R  *  N  S  H  P  L  P  Q  K  S  L  E  M  E  G  S  L  *  E  R  L  L  P  S  L  P  H  L  A  A  H  G  M  A  L  T  V  L  S  T  W  A  H  S  L  V  N  P  Q  A  T  *  P  V  N  S  L  V  T  M  D  G  T  L  L  D  F  Q  Q  T  L  R  P  L  P  R  T  V  N  S  R  *  S  T  V  D  G  L  C  L  V  L  L  D  V  S  F  L  S  S  W  P  A  T  V  *  S  L  V  R  L  C  G  S  R  P  D  P  R  S  S  A  R  V  D  L  T  T  W  A  T  Q  A  W  F  M  H  K  A  S  W  P  F  G  L  A  K  L  C  *  W  E  L  L  K  V  T  V  L  L  V  D  L  L  V  R  L  S  T  H  S  T  Q  V  E  A  S  T  H  *  A  L  L  K  T  Q  R  H  L  L  S  S  R  *  R  R  S  R  T  V  D  L  L  C  S  L  C  L  D  S  L  F  K  P  L  L  P  E  K  V  H  W  R  T  L  L  I  T  L  Q  T  Q  *  T  T  T  P  G  P  S  P  Q  T  L  F  P  E  S  E  Y  H  K  M  I  F  K  F  S  C  K  V  V  V  N  E  L  T  I  *  W  I  F  L  F  Q  *  F  L  V  L  N  F  H  L  L  N  P  Q  Y  E  S  N  N  K  T  F  I  P  K  T  K  E  T  E  * </first_frame>
            <second_frame>  S  T  H  H  S  K  L  Q  K  F  T  I  K  H  L  L  F  S  *  Y  K  H  N  G  S  C  Y  N  G  S  F  F  P  F  F  C  W  T  G  G  E  T  L  T  L  C  L  R  N  L  W  K  W  K  D  H  Y  E  K  G  C  C  Q  V  C  P  I  *  Q  P  M  V  W  P  *  P  C  *  V  L  G  P  I  L  W  *  I  P  K  L  L  D  R  *  I  P  W  *  L  W  M  G  H  C  W  T  F  S  R  P  *  D  L  C  Q  E  P  *  T  R  G  D  P  L  *  M  G  Y  A  W  C  S  W  M  C  L  S  *  A  L  G  P  Q  R  C  K  V  W  *  G  C  V  V  Q  G  R  I  P  D  L  Q  R  G  W  T  *  L  L  G  Q  P  K  L  G  S  C  T  K  H  L  G  H  L  G  L  P  S  C  V  D  G  S  C  *  R  L  P  Y  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  K  L  R  P  I  R  P  C  *  R  P  R  G  I  C  *  A  Q  G  K  G  D  Q  E  R  *  T  C  Y  V  L  Y  V  W  I  L  C  S  S  H  C  Y  R  K  R  S  I  G  E  P  C  *  S  P  C  R  P  S  K  Q  Q  R  L  G  L  R  H  K  L  C  S  R  K  V  N  T  I  K  *  F  L  N  F  H  V  K  L  L  *  M  S  *  Q  Y  N  G  F  F  Y  S  N  D  F  *  S  *  I  F  I  F  *  T  H  N  T  N  Q  T  I  K  L  S  F  Q  K  Q  K  K  Q  N   </second_frame>
            <third_frame>   Q  L  I  T  A  N  F  K  S  L  P  S  N  T  Y  F  S  L  D  I  N  T  M  A  A  A  T  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  I  P  *  N  D  F  *  I  F  M  *  S  C  C  E  *  V  D  N  I  M  D  F  S  I  P  M  I  F  S  P  E  F  S  S  S  K  P  T  I  R  I  K  Q  *  N  F  H  S  K  N  K  R  N  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4254" stop="3391"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLITANFKSLPSNTYFSLDINTMAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4243" e_stop="3772"/>
            <exon e_start="3721" e_stop="3296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="4243" e_stop="3772" e_length="472"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3771" i_stop="3722" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="3721" e_stop="3296" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4243" stop="3855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4242" stop="3903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3772"/>
              <exon start="3721" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4241" stop="3837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4240" stop="3826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4236" stop="3844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4235" stop="3814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="3827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4234" stop="3861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4233" stop="3796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4233" stop="3821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4233" stop="3826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4233" stop="3835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4233" stop="3837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4233" stop="3899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4233" stop="3915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4231" stop="3903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4231" stop="3903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4231" stop="3903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4230" stop="3783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4230" stop="3837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4230" stop="4006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4226" stop="3837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4226" stop="3924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4225" stop="3829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4219" stop="3809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4219" stop="3814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4219" stop="3825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4219" stop="3843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4216" stop="3800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4214" stop="3924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4205" stop="3902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4200" stop="3902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4200" stop="3902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4200" stop="3902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4199" stop="3902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4174" stop="3950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4161" stop="3904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4094" stop="3902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3707" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3704" stop="3296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3703" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3703" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280593" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3698" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3697" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3679" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3672" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3665" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3646" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3640" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3617" stop="3454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3610" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3610" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3610" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3610" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3610" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3610" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3609" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3603" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289606" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3595" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3571" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3492" stop="3313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAACTTCAAAAGTTTACCATCAAACACTTACTTTTCTCTTGATATAAACACAATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAATCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTATGGATGGGACACTGCTGGACTTTCAGCAGACCCTGAGACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGTAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGC : CATCTTGGCCATTTGGGCTTGCCAAGTTGTGTTGATGGGAGCTGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAAGGTCCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGGCCTTCGCCACAAACTTTGTTCCCGGAAAGTGAATACCATAAAATGATTTTTAAATTTTCATGTAAAGTTGTTGTGAATGAGTTGACAATATAATGGATTTTTCTATTCCAATGATTTTTAGTCCTGA</gDNA_template>
            <first_frame> S  K  L  Q  K  F  T  I  K  H  L  L  F  S  *  Y  K  H  N  G  S  C  Y  N  G  S  F  F  P  F  F  C  W  T  G  G  E  T  L  T  L  C  L  R  N  L  W  K  W  K  D  H  Y  E  K  G  C  C  Q  V  C  P  I  *  Q  P  M  V  W  P  *  P  C  *  V  L  G  P  I  L  W  *  I  P  K  L  L  D  R  *  I  P  W  *  L  W  M  G  H  C  W  T  F  S  R  P  *  D  L  C  Q  E  P  *  T  R  G  D  P  L  *  M  G  Y  A  W  C  S  W  M  C  L  S  *  A  L  G  P  Q  R  C  K  V  W  *  G  C  V  V  Q  G  R  I  P  D  L  Q   : P  S  W  P  F  G  L  A  K  L  C  *  W  E  L  L  K  V  T  V  L  L  V  D  L  L  V  R  L  S  T  H  S  T  Q  V  E  A  S  T  H  *  A  L  L  K  T  Q  R  H  L  L  S  S  R  *  R  R  S  R  T  V  D  L  L  C  S  L  C  L  D  S  L  F  K  P  L  L  P  E  K  V  H  W  R  T  L  L  I  T  L  Q  T  Q  *  T  T  T  P  G  P  S  P  Q  T  L  F  P  E  S  E  Y  H  K  M  I  F  K  F  S  C  K  V  V  V  N  E  L  T  I  *  W  I  F  L  F  Q  *  F  L  V  L  </first_frame>
            <second_frame>  A  N  F  K  S  L  P  S  N  T  Y  F  S  L  D  I  N  T  M  A  A  A  T  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  :  H  L  G  H  L  G  L  P  S  C  V  D  G  S  C  *  R  L  P  Y  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  K  L  R  P  I  R  P  C  *  R  P  R  G  I  C  *  A  Q  G  K  G  D  Q  E  R  *  T  C  Y  V  L  Y  V  W  I  L  C  S  S  H  C  Y  R  K  R  S  I  G  E  P  C  *  S  P  C  R  P  S  K  Q  Q  R  L  G  L  R  H  K  L  C  S  R  K  V  N  T  I  K  *  F  L  N  F  H  V  K  L  L  *  M  S  *  Q  Y  N  G  F  F  Y  S  N  D  F  *  S  * </second_frame>
            <third_frame>   Q  T  S  K  V  Y  H  Q  T  L  T  F  L  L  I  *  T  Q  W  Q  L  L  Q  W  L  F  L  P  L  L  L  L  D  R  R  *  N  S  H  P  L  P  Q  K  S  L  E  M  E  G  S  L  *  E  R  L  L  P  S  L  P  H  L  A  A  H  G  M  A  L  T  V  L  S  T  W  A  H  S  L  V  N  P  Q  A  T  *  P  V  N  S  L  V  T  M  D  G  T  L  L  D  F  Q  Q  T  L  R  P  L  P  R  T  V  N  S  R  *  S  T  V  D  G  L  C  L  V  L  L  D  V  S  F  L  S  S  W  P  A  T  V  *  S  L  V  R  L  C  G  S  R  P  D  P  R  S  S  A :   I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  I  P  *  N  D  F  *  I  F  M  *  S  C  C  E  *  V  D  N  I  M  D  F  S  I  P  M  I  F  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4242" stop="3772"/>
                    <exon start="3721" stop="3674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANFKSLPSNTYFSLDINTMAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSHLGHLGLPSCVDGSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="11429" PGL_stop="5729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11429" e_stop="10378"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="11429" e_stop="10378" e_length="1052"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11429" stop="10685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11429" stop="10750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11429" stop="10863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11427" stop="10604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11426" stop="10742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11426" stop="10743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11426" stop="10767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11426" stop="10863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11425" stop="10534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11425" stop="10543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11425" stop="10608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11423" stop="10533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11423" stop="10556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11423" stop="10603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11422" stop="10733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11422" stop="10865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11422" stop="10883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11422" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11420" stop="10462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11420" stop="10555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11420" stop="10884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11420" stop="10895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11420" stop="11207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11419" stop="10768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11419" stop="11006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11418" stop="10779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11418" stop="10825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11417" stop="10465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11417" stop="10522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11417" stop="10768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11417" stop="10913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11416" stop="10533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11416" stop="10558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11416" stop="10669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11416" stop="10835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11416" stop="10862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11415" stop="10502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11415" stop="10600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11415" stop="10827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11413" stop="10712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11413" stop="10732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11413" stop="10747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11413" stop="10881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11412" stop="10666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11412" stop="10681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11412" stop="10781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11412" stop="10824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11412" stop="10865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11412" stop="10882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11412" stop="10898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11412" stop="11116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11411" stop="10798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11410" stop="11190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11408" stop="10768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11408" stop="10896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11408" stop="10929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11407" stop="10475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11407" stop="10746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11406" stop="10599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11405" stop="10896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11405" stop="10923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11404" stop="10743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11404" stop="10865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11403" stop="10600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11402" stop="10734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11401" stop="10546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11401" stop="10884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11401" stop="11210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11400" stop="10784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11398" stop="10884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11398" stop="11000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11390" stop="10526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11370" stop="10859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11365" stop="10728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11361" stop="10579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11361" stop="10664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11361" stop="10828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11361" stop="10859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11361" stop="10859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11361" stop="10882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11361" stop="10884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11360" stop="10780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11357" stop="10898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11339" stop="10700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11329" stop="10696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11329" stop="11064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11283" stop="10459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11251" stop="10451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11251" stop="10451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11249" stop="10608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11227" stop="11017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11203" stop="10465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11197" stop="10684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11100" stop="10478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374338" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11089" stop="10602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11031" stop="10462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11024" stop="10728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11020" stop="10478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10981" stop="10478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10953" stop="10462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10945" stop="10385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10933" stop="10467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10912" stop="10384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10837" stop="10478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10806" stop="10478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10803" stop="10378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10771" stop="10469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277673" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10755" stop="10384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10632" stop="10451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294231" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGCGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTTCCTGAGCTCTTGGCCCGCAACGGTGTAAAGTTTGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAAGGTTACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCCGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCGATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAAAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTTCCCGGAAAATGAAAATCTTAAACATTCTTAAAATTTGATTGTTTGATGGCCTTGTAAAGTAGTTGTCAGTAATTACTTGACATTAGAATGGATTATTTTTTTTCAATATTCAAAATTTCCAATGATTGTGTAATCCTGAGTTACATTTTTCAAAGCCACGAATAAAAAATATTGCCACTTTTATACCAAAGGGTAGAAGAAAGAG</gDNA_template>
            <first_frame> H  S  L  Q  Q  Y  L  I  P  *  N  T  Q  H  F  S  L  N  I  N  H  G  S  C  C  N  G  S  F  F  P  F  I  C  W  T  G  S  Q  T  L  T  I  C  L  R  K  F  W  K  W  K  D  H  Y  E  K  G  C  R  Q  V  C  P  I  *  Q  P  M  V  W  P  *  P  C  *  V  L  G  T  I  L  W  *  V  P  K  L  L  D  W  R  I  P  W  *  L  R  L  G  Y  R  W  T  F  S  *  P  *  D  L  C  Q  E  P  *  T  *  G  D  P  L  Q  M  G  Y  A  W  C  S  W  M  C  L  S  *  A  L  G  P  Q  R  C  K  V  W  *  G  C  V  V  Q  G  R  I  P  D  L  Q  R  G  W  T  *  L  L  G  Q  P  K  L  G  P  C  T  K  H  L  G  H  L  G  L  S  S  C  V  D  G  S  R  *  R  L  P  H  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  Q  L  R  P  I  R  P  C  *  R  P  *  G  I  C  R  A  Q  G  K  G  D  *  E  R  Q  T  C  Y  V  L  D  V  W  I  L  R  S  S  H  C  Y  W  K  G  S  I  G  K  P  C  *  P  P  C  R  P  R  *  Q  Q  R  L  G  F  R  H  K  L  C  S  R  K  M  K  I  L  N  I  L  K  I  *  L  F  D  G  L  V  K  *  L  S  V  I  T  *  H  *  N  G  L  F  F  F  N  I  Q  N  F  Q  *  L  C  N  P  E  L  H  F  S  K  P  R  I  K  N  I  A  T  F  I  P  K  G  R  R  K   </first_frame>
            <second_frame>  T  A  F  N  N  I  *  Y  H  K  I  L  N  T  F  L  L  I  *  I  M  A  A  A  A  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  N  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  K  S  *  T  F  L  K  F  D  C  L  M  A  L  *  S  S  C  Q  *  L  L  D  I  R  M  D  Y  F  F  S  I  F  K  I  S  N  D  C  V  I  L  S  Y  I  F  Q  S  H  E  *  K  I  L  P  L  L  Y  Q  R  V  E  E  R  </second_frame>
            <third_frame>   Q  P  S  T  I  F  N  T  I  K  Y  S  T  L  F  S  *  Y  K  S  W  Q  L  L  Q  W  L  F  L  P  L  H  L  L  D  R  Q  S  N  S  H  H  L  P  Q  K  I  L  E  M  E  G  S  L  *  E  R  L  S  P  S  L  P  H  L  A  A  H  G  M  A  L  T  V  L  S  T  W  D  H  S  L  V  S  P  Q  A  T  *  L  A  N  S  L  V  T  T  A  G  I  P  L  D  F  Q  L  T  L  R  P  L  P  R  T  V  N  L  R  *  S  T  A  D  G  L  C  L  V  L  L  D  V  S  F  L  S  S  W  P  A  T  V  *  S  L  V  R  L  C  G  S  R  P  D  P  R  S  S  A  R  V  D  L  T  T  W  A  T  Q  A  W  S  M  H  K  A  S  W  P  S  G  L  V  K  L  C  *  W  E  P  L  K  V  T  A  L  L  V  D  L  L  V  R  L  S  T  H  S  T  P  V  A  A  S  T  H  *  A  L  L  K  T  L  R  H  L  P  S  S  R  *  R  R  L  R  T  A  D  L  L  C  S  R  C  L  D  S  S  F  K  P  L  L  L  E  R  V  H  W  K  T  L  L  T  T  L  Q  T  P  L  T  T  T  L  G  L  S  P  Q  T  L  F  P  E  N  E  N  L  K  H  S  *  N  L  I  V  *  W  P  C  K  V  V  V  S  N  Y  L  T  L  E  W  I  I  F  F  Q  Y  S  K  F  P  M  I  V  *  S  *  V  T  F  F  K  A  T  N  K  K  Y  C  H  F  Y  T  K  G  *  K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11371" stop="10571"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAAAAMALSSPSFAGQAVKLSPSASENSGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6690" e_stop="5729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="6690" e_stop="5729" e_length="962"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6690" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6688" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6688" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6688" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6688" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6688" stop="5792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6688" stop="5805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6688" stop="5940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6688" stop="5947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6687" stop="5732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6687" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6687" stop="5805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6687" stop="5818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6687" stop="5944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6687" stop="6004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6687" stop="6008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6687" stop="6161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6686" stop="5796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6686" stop="6002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6685" stop="6167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6684" stop="5958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6683" stop="5741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6683" stop="6079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6682" stop="6004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6682" stop="6005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6682" stop="6220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6681" stop="5896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6681" stop="6122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="5729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="5730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="5732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="5739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="5777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="5794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="5799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="5992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="6138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6680" stop="6194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6679" stop="5964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6679" stop="6088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6679" stop="6179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6679" stop="6221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6679" stop="6255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6679" stop="6278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6679" stop="6504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6678" stop="6023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6678" stop="6184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6677" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6677" stop="5930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6677" stop="6047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478550" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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              <exon start="6210" stop="5729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6210" stop="5729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6207" stop="5818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6202" stop="5729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6193" stop="5778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6153" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284030" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6150" stop="5778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6146" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6054" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6031" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6031" stop="5737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCCAACTTCAACAATATCTCATACCATCAAACACTTACATTTCTCTTGATATAAACACCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAAGCAGTGAAACTCTTACCATCTGCCTCAGAAATCACAGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCAAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAGTCCCCTAGCTACTTGAATGGTGAATTCCCTGGTGACTACGGGTGGGACACCGCTGGACTTTCAGCAGATCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAGTTTGGTGAGGCTGTCTGGTTCAAGGCTGGATCTCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTAGACCCACTCTACCCCGGTGGAAGCTTCGACCCATTAGGCCTTGCTGAAGACCCTGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGTAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTAATTTGTGAGTTAACTTGAACAATAGAATTGATTTTTCTTACATCTTATT</gDNA_template>
            <first_frame> Q  P  T  S  T  I  S  H  T  I  K  H  L  H  F  S  *  Y  K  H  H  G  S  C  Y  N  G  S  F  F  P  F  F  C  W  T  S  S  E  T  L  T  I  C  L  R  N  H  R  K  W  K  D  H  Y  E  K  G  C  R  K  V  S  P  I  *  Q  P  M  V  W  P  *  P  C  *  V  L  G  S  I  L  W  *  V  P  *  L  L  E  W  *  I  P  W  *  L  R  V  G  H  R  W  T  F  S  R  S  R  N  L  C  Q  E  P  *  T  R  G  D  P  L  Q  M  G  Y  A  W  C  S  W  M  C  L  P  *  A  L  G  P  *  W  C  Q  V  W  *  G  C  L  V  Q  G  W  I  S  N  L  Q  *  G  W  T  *  L  L  G  Q  P  K  L  G  P  C  T  E  H  L  G  H  L  G  L  P  S  C  T  H  G  S  R  *  R  L  P  Y  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  K  L  R  P  I  R  P  C  *  R  P  *  G  I  C  *  A  Q  G  K  G  D  *  E  R  *  T  C  Y  V  L  Y  V  W  I  L  C  S  S  H  C  Y  W  K  G  T  I  G  E  P  C  *  S  P  C  R  P  S  K  Q  Q  R  L  V  L  R  H  K  L  C  P  R  K  I  K  I  L  K  H  S  Q  V  S  D  H  L  L  T  M  *  S  C  N  L  *  V  N  L  N  N  R  I  D  F  S  Y  I  L   </first_frame>
            <second_frame>  S  Q  L  Q  Q  Y  L  I  P  S  N  T  Y  I  S  L  D  I  N  T  M  A  A  A  T  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  L  P  S  A  S  E  I  T  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  N  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  S  Y  A  T  N  F  V  P  G  K  *  K  S  *  N  I  L  K  F  L  I  I  C  *  P  C  K  V  V  I  C  E  L  T  *  T  I  E  L  I  F  L  T  S  Y  </second_frame>
            <third_frame>   A  N  F  N  N  I  S  Y  H  Q  T  L  T  F  L  L  I  *  T  P  W  Q  L  L  Q  W  L  F  L  P  L  L  L  L  D  K  Q  *  N  S  Y  H  L  P  Q  K  S  Q  E  M  E  G  S  L  *  E  R  L  S  Q  S  Q  P  H  L  A  A  H  G  M  A  L  T  V  L  S  T  W  V  H  S  L  V  S  P  L  A  T  *  M  V  N  S  L  V  T  T  G  G  T  P  L  D  F  Q  Q  I  Q  K  P  L  P  R  T  V  N  S  R  *  S  T  A  D  G  L  C  L  V  L  L  D  V  S  S  L  S  S  W  P  V  M  V  S  S  L  V  R  L  S  G  S  R  L  D  L  K  S  S  V  R  V  D  L  T  T  W  A  T  Q  A  W  S  M  H  R  A  S  W  P  S  G  L  A  K  L  Y  S  W  E  P  L  K  V  T  V  L  L  V  D  L  L  V  R  L  *  T  H  S  T  P  V  E  A  S  T  H  *  A  L  L  K  T  L  R  H  L  L  S  S  R  *  R  R  L  R  T  V  D  L  L  C  S  L  C  L  D  S  L  F  K  P  L  L  L  E  R  D  H  W  R  T  L  L  I  T  L  Q  T  Q  *  T  T  T  P  G  P  T  P  Q  T  L  S  P  E  N  K  N  L  K  T  F  S  S  F  *  S  F  V  D  H  V  K  L  *  F  V  S  *  L  E  Q  *  N  *  F  F  L  H  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6689" stop="5832"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQLQQYLIPSNTYISLDINTMAAATMALSSPSFAGQAVKLLPSASEITGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLNGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9073" e_stop="8071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="9073" e_stop="8071" e_length="1003"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9073" stop="8212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9072" stop="8403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9072" stop="8552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9071" stop="8154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9071" stop="8500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9070" stop="8163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9069" stop="8234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9069" stop="8360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9068" stop="8522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9067" stop="8195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9065" stop="8403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9065" stop="8404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9064" stop="8568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9064" stop="8744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9063" stop="8359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9063" stop="8488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9063" stop="8498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9063" stop="8523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9063" stop="8611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9063" stop="8626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9063" stop="8889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9061" stop="8463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9049" stop="8773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9048" stop="8484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9036" stop="8440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9030" stop="8502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9026" stop="8369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9026" stop="8389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9019" stop="8299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9018" stop="8521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9013" stop="8474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9010" stop="8360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9010" stop="8457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9009" stop="8521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9007" stop="8539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8955" stop="8368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8911" stop="8326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8846" stop="8524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8836" stop="8508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8794" stop="8477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8734" stop="8359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8674" stop="8154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8623" stop="8154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8616" stop="8146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8549" stop="8163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8506" stop="8163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8370" stop="8071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAACTATGGTGTAGTATATAATTCCATTTTCCAATTGCATGAATGAAATACTGCAAGATTCATATCAAAGGGGGAAAAAAGATGAC</gDNA_template>
            <first_frame> L  *  H  F  K  H  S  S  L  F  S  C  Y  K  P  W  Q  L  L  Q  W  L  F  L  P  L  L  L  L  G  R  Q  *  N  S  H  P  L  P  Q  K  S  L  E  M  E  G  S  L  *  E  R  L  L  P  S  L  P  R  L  A  A  H  G  M  D  Q  T  V  L  S  T  *  A  H  S  L  V  S  P  Q  A  T  *  P  V  N  S  L  V  T  T  A  G  I  P  L  D  F  Q  L  T  L  K  L  L  P  R  T  V  N  L  R  *  S  T  A  D  G  L  C  L  V  L  L  D  V  S  S  L  S  Y  W  P  V  M  V  S  S  S  V  R  L  C  G  S  R  L  D  P  R  S  S  A  R  V  D  L  I  T  W  A  T  Q  A  W  S  M  H  K  A  S  W  P  S  G  L  V  K  L  C  *  W  E  P  L  R  D  T  A  L  L  V  D  L  L  V  R  L  S  T  H  S  T  P  V  A  A  S  T  H  *  A  L  L  K  T  R  R  H  L  L  S  L  R  L  R  R  S  R  T  A  D  L  L  C  S  L  C  L  G  S  L  F  R  P  L  L  P  E  R  V  H  W  R  T  S  L  T  T  L  R  I  Q  L  I  T  M  P  G  P  L  P  Q  T  L  F  L  E  N  E  Y  H  K  L  M  A  L  *  S  C  N  C  E  F  T  R  Q  Y  N  G  F  F  L  Y  S  N  Y  G  V  V  Y  N  S  I  F  Q  L  H  E  *  N  T  A  R  F  I  S  K  G  E  K  R  *  </first_frame>
            <second_frame>  F  D  I  S  N  T  H  H  F  S  L  V  I  N  H  G  S  F  Y  N  G  S  F  F  P  F  F  C  W  A  G  S  E  T  L  T  L  C  L  R  N  L  W  K  W  K  D  H  Y  E  K  G  C  C  Q  V  C  P  V  *  Q  P  M  V  W  T  R  P  C  *  V  L  R  P  I  L  W  *  V  P  K  L  L  D  R  *  I  P  W  *  L  R  L  G  Y  R  W  T  F  S  *  P  *  N  F  C  Q  E  P  *  T  *  G  D  P  L  Q  M  G  Y  A  W  C  S  W  M  C  L  P  *  A  I  G  P  *  W  C  Q  V  R  *  G  C  V  V  Q  G  W  I  P  D  L  Q  R  G  W  T  *  L  L  G  Q  P  K  L  G  P  C  T  K  H  L  G  H  L  G  L  S  S  C  V  D  G  S  R  *  G  I  P  H  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  Q  L  R  P  I  R  P  C  *  R  P  G  G  I  C  *  A  *  G  *  G  D  Q  E  R  Q  T  C  Y  V  L  Y  V  W  V  L  C  S  G  H  C  Y  R  K  G  S  I  G  E  P  R  *  P  P  C  G  S  S  *  *  Q  C  L  G  L  C  H  K  L  C  S  W  K  M  N  I  I  N  *  W  P  C  K  V  V  I  V  S  L  L  D  N  I  M  D  F  S  Y  I  P  T  M  V  *  Y  I  I  P  F  S  N  C  M  N  E  I  L  Q  D  S  Y  Q  R  G  K  K  D  D </second_frame>
            <third_frame>   L  T  F  Q  T  L  I  T  F  L  L  L  *  T  M  A  A  S  T  M  A  L  S  S  P  S  F  V  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  I  S  *  I  D  G  L  V  K  L  *  L  *  V  Y  *  T  I  *  W  I  F  L  I  F  Q  L  W  C  S  I  *  F  H  F  P  I  A  *  M  K  Y  C  K  I  H  I  K  G  G  K  K  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9032" stop="8232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAASTMALSSPSFVGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9064" e_stop="8620"/>
            <exon e_start="8451" e_stop="8071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="9064" e_stop="8620" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8619" i_stop="8452" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="8451" e_stop="8071" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9064" stop="8744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9063" stop="8626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9063" stop="8889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9049" stop="8773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8756" stop="8620"/>
              <exon start="8451" stop="8081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8370" stop="8071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGAT : CTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAACTATGGTGTAGTATATAATTCCATTTTCCAATTGCATGAATGAAATACTGCAAGATTCATATCAAAGGGGGAAAAAAGATGAC</gDNA_template>
            <first_frame> F  K  H  S  S  L  F  S  C  Y  K  P  W  Q  L  L  Q  W  L  F  L  P  L  L  L  L  G  R  Q  *  N  S  H  P  L  P  Q  K  S  L  E  M  E  G  S  L  *  E  R  L  L  P  S  L  P  R  L  A  A  H  G  M  D  Q  T  V  L  S  T  *  A  H  S  L  V  S  P  Q  A  T  *  P  V  N  S  L  V  T  T  A  G  I  P  L  D  F  Q  L  T  L  K  L  L  P  R  T  V  N  L  R  *  S  T  A  D  G  L  C  L  V  L  L  D  V  S  S  L  S  Y  W  P  V  M  V  S  S  S  V  R  L  C  G  S  R  L  D  P  R   : S  S  T  H  *  A  L  L  K  T  R  R  H  L  L  S  L  R  L  R  R  S  R  T  A  D  L  L  C  S  L  C  L  G  S  L  F  R  P  L  L  P  E  R  V  H  W  R  T  S  L  T  T  L  R  I  Q  L  I  T  M  P  G  P  L  P  Q  T  L  F  L  E  N  E  Y  H  K  L  M  A  L  *  S  C  N  C  E  F  T  R  Q  Y  N  G  F  F  L  Y  S  N  Y  G  V  V  Y  N  S  I  F  Q  L  H  E  *  N  T  A  R  F  I  S  K  G  E  K  R  *  </first_frame>
            <second_frame>  S  N  T  H  H  F  S  L  V  I  N  H  G  S  F  Y  N  G  S  F  F  P  F  F  C  W  A  G  S  E  T  L  T  L  C  L  R  N  L  W  K  W  K  D  H  Y  E  K  G  C  C  Q  V  C  P  V  *  Q  P  M  V  W  T  R  P  C  *  V  L  R  P  I  L  W  *  V  P  K  L  L  D  R  *  I  P  W  *  L  R  L  G  Y  R  W  T  F  S  *  P  *  N  F  C  Q  E  P  *  T  *  G  D  P  L  Q  M  G  Y  A  W  C  S  W  M  C  L  P  *  A  I  G  P  *  W  C  Q  V  R  *  G  C  V  V  Q  G  W  I  P  D  :  L  R  P  I  R  P  C  *  R  P  G  G  I  C  *  A  *  G  *  G  D  Q  E  R  Q  T  C  Y  V  L  Y  V  W  V  L  C  S  G  H  C  Y  R  K  G  S  I  G  E  P  R  *  P  P  C  G  S  S  *  *  Q  C  L  G  L  C  H  K  L  C  S  W  K  M  N  I  I  N  *  W  P  C  K  V  V  I  V  S  L  L  D  N  I  M  D  F  S  Y  I  P  T  M  V  *  Y  I  I  P  F  S  N  C  M  N  E  I  L  Q  D  S  Y  Q  R  G  K  K  D  D </second_frame>
            <third_frame>   Q  T  L  I  T  F  L  L  L  *  T  M  A  A  S  T  M  A  L  S  S  P  S  F  V  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I :   F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  I  S  *  I  D  G  L  V  K  L  *  L  *  V  Y  *  T  I  *  W  I  F  L  I  F  Q  L  W  C  S  I  *  F  H  F  P  I  A  *  M  K  Y  C  K  I  H  I  K  G  G  K  K  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9032" stop="8620"/>
                    <exon start="8451" stop="8232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAASTMALSSPSFVGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="9073" e_stop="8646"/>
            <exon e_start="8534" e_stop="8071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9073" e_stop="8646" e_length="428"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8645" i_stop="8535" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="8534" e_stop="8071" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9073" stop="8646"/>
              <exon start="8534" stop="8147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9064" stop="8744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9063" stop="8889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9049" stop="8773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8506" stop="8163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8370" stop="8071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGACATTTCAAACACTCATCACTTTTCTCTTGTTATAAACCATGGCAGCTTCTACAATGGCTCTTTCTTCCCCTTCTTTTGTTGGGCAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTTGCCAAGTCTGCCCCGTCTAGCAGCCCATGGTATGGACCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCT : GTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGGTTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTCGCTGACCACCTTGCGGATCCAGTTAATAACAATGCCTGGGCCTTTGCCACAAACTTTGTTCCTGGAAAATGAATATCATAAATTGATGGCCTTGTAAAGTTGTAATTGTGAGTTTACTAGACAATATAATGGATTTTTCTTATATTCCAACTATGGTGTAGTATATAATTCCATTTTCCAATTGCATGAATGAAATACTGCAAGATTCATATCAAAGGGGGAAAAAAGATGAC</gDNA_template>
            <first_frame> L  *  H  F  K  H  S  S  L  F  S  C  Y  K  P  W  Q  L  L  Q  W  L  F  L  P  L  L  L  L  G  R  Q  *  N  S  H  P  L  P  Q  K  S  L  E  M  E  G  S  L  *  E  R  L  L  P  S  L  P  R  L  A  A  H  G  M  D  Q  T  V  L  S  T  *  A  H  S  L  V  S  P  Q  A  T  *  P  V  N  S  L  V  T  T  A  G  I  P  L  D  F  Q  L  T  L  K  L  L  P  R  T  V  N  L  R  *  S  T  A  D  G  L  C  L  V  L  L  D  V  S  S  L  S  Y  W  P  V  M  V  S  S  S  V  R  L :   C  *  W  E  P  L  R  D  T  A  L  L  V  D  L  L  V  R  L  S  T  H  S  T  P  V  A  A  S  T  H  *  A  L  L  K  T  R  R  H  L  L  S  L  R  L  R  R  S  R  T  A  D  L  L  C  S  L  C  L  G  S  L  F  R  P  L  L  P  E  R  V  H  W  R  T  S  L  T  T  L  R  I  Q  L  I  T  M  P  G  P  L  P  Q  T  L  F  L  E  N  E  Y  H  K  L  M  A  L  *  S  C  N  C  E  F  T  R  Q  Y  N  G  F  F  L  Y  S  N  Y  G  V  V  Y  N  S  I  F  Q  L  H  E  *  N  T  A  R  F  I  S  K  G  E  K  R  *  </first_frame>
            <second_frame>  F  D  I  S  N  T  H  H  F  S  L  V  I  N  H  G  S  F  Y  N  G  S  F  F  P  F  F  C  W  A  G  S  E  T  L  T  L  C  L  R  N  L  W  K  W  K  D  H  Y  E  K  G  C  C  Q  V  C  P  V  *  Q  P  M  V  W  T  R  P  C  *  V  L  R  P  I  L  W  *  V  P  K  L  L  D  R  *  I  P  W  *  L  R  L  G  Y  R  W  T  F  S  *  P  *  N  F  C  Q  E  P  *  T  *  G  D  P  L  Q  M  G  Y  A  W  C  S  W  M  C  L  P  *  A  I  G  P  *  W  C  Q  V  R  *  G   : C  V  D  G  S  R  *  G  I  P  H  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  Q  L  R  P  I  R  P  C  *  R  P  G  G  I  C  *  A  *  G  *  G  D  Q  E  R  Q  T  C  Y  V  L  Y  V  W  V  L  C  S  G  H  C  Y  R  K  G  S  I  G  E  P  R  *  P  P  C  G  S  S  *  *  Q  C  L  G  L  C  H  K  L  C  S  W  K  M  N  I  I  N  *  W  P  C  K  V  V  I  V  S  L  L  D  N  I  M  D  F  S  Y  I  P  T  M  V  *  Y  I  I  P  F  S  N  C  M  N  E  I  L  Q  D  S  Y  Q  R  G  K  K  D  D </second_frame>
            <third_frame>   L  T  F  Q  T  L  I  T  F  L  L  L  *  T  M  A  A  S  T  M  A  L  S  S  P  S  F  V  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  :  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  I  S  *  I  D  G  L  V  K  L  *  L  *  V  Y  *  T  I  *  W  I  F  L  I  F  Q  L  W  C  S  I  *  F  H  F  P  I  A  *  M  K  Y  C  K  I  H  I  K  G  G  K  K  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9032" stop="8646"/>
                    <exon start="8534" stop="8232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMAASTMALSSPSFVGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="9359" e_stop="9342"/>
            <exon e_start="8688" e_stop="8373"/>
            <exon e_start="5972" e_stop="5778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.886" acc_prob="0.000" e_score="0.556"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="0.949"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.556">
            <gDNA_exon_boundary e_start="9359" e_stop="9342" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.886" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9341" i_stop="8689" i_length="653"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="8688" e_stop="8373" e_length="316"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8372" i_stop="5973" i_length="2400"/>
          </intron>
          <exon e_serial="3" e_score="0.892">
            <gDNA_exon_boundary e_start="5972" e_stop="5778" e_length="195"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9359" stop="9342"/>
              <exon start="8688" stop="8373"/>
              <exon start="5972" stop="5778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAATCTATAGAAATG : CCCTGAGCTATTGGCCCGTAATGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGACTTGATTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTT : GCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</gDNA_template>
            <first_frame> T  K  S  I  E  M  :  P  *  A  I  G  P  *  W  C  Q  V  R  *  G  C  V  V  Q  G  W  I  P  D  L  Q  R  G  W  T  *  L  L  G  Q  P  K  L  G  P  C  T  K  H  L  G  H  L  G  L  S  S  C  V  D  G  S  R  *  G  I  P  H  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  Q  L  R  P  I  R  P  C  *  R  P  G  G  I  C  *  A  *  G  *  G  D  Q  E  R  Q  T   : C  Y  V  L  Y  V  W  I  L  C  S  S  H  C  Y  W  K  G  T  I  G  E  P  C  *  S  P  C  R  P  S  K  Q  Q  R  L  V  L  R  H  K  L  C  P  R  K  I  K  I  L  K  H  S  Q  V  S  D  H  L  L  T  M  *  S  C  </first_frame>
            <second_frame>  Q  N  L  *  K  C :   P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  :  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  S  Y  A  T  N  F  V  P  G  K  *  K  S  *  N  I  L  K  F  L  I  I  C  *  P  C  K  V  V </second_frame>
            <third_frame>   K  I  Y  R  N   : A  L  S  Y  W  P  V  M  V  S  S  S  V  R  L  C  G  S  R  L  D  P  R  S  S  A  R  V  D  L  I  T  W  A  T  Q  A  W  S  M  H  K  A  S  W  P  S  G  L  V  K  L  C  *  W  E  P  L  R  D  T  A  L  L  V  D  L  L  V  R  L  S  T  H  S  T  P  V  A  A  S  T  H  *  A  L  L  K  T  R  R  H  L  L  S  L  R  L  R  R  S  R  T  A  D  L :   L  C  S  L  C  L  D  S  L  F  K  P  L  L  L  E  R  D  H  W  R  T  L  L  I  T  L  Q  T  Q  *  T  T  T  P  G  P  T  P  Q  T  L  S  P  E  N  K  N  L  K  T  F  S  S  F  *  S  F  V  D  H  V  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9346" stop="9342"/>
                    <exon start="8688" stop="8373"/>
                    <exon start="5972" stop="5832"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="11394" e_stop="11230"/>
            <exon e_start="8587" e_stop="8373"/>
            <exon e_start="5972" e_stop="5778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.897"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="0.963"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="11394" e_stop="11230" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11229" i_stop="8588" i_length="2642"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="8587" e_stop="8373" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8372" i_stop="5973" i_length="2400"/>
          </intron>
          <exon e_serial="3" e_score="0.892">
            <gDNA_exon_boundary e_start="5972" e_stop="5778" e_length="195"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11394" stop="11230"/>
              <exon start="8587" stop="8373"/>
              <exon start="5972" stop="5778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343750" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTGCAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAAATTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCA : ACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTGTTGATGGGAGCCGTTGAGGGATACCGCATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTTAAGGTTAAGGAGATCAAGAACGGCAGACTT : GCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGACCATTGGAGAACCTTGCTGATCACCTTGCAGACCCAGTAAACAACAACGCCTGGTCCTACGCCACAAACTTTGTCCCCGGAAAATAAAAATCTTAAAACATTCTCAAGTTTCTGATCATTTGTTGACCATGTAAAGTTGTA</gDNA_template>
            <first_frame> S  T  L  F  S  *  Y  K  S  W  Q  L  L  Q  W  L  F  L  P  L  H  L  L  D  R  Q  S  N  S  H  H  L  P  Q  K  I  L  E  M  E  G  S  L  *  E  R  L  S  P  S  L  P  H  L  A  :  T  Q  A  W  S  M  H  K  A  S  W  P  S  G  L  V  K  L  C  *  W  E  P  L  R  D  T  A  L  L  V  D  L  L  V  R  L  S  T  H  S  T  P  V  A  A  S  T  H  *  A  L  L  K  T  R  R  H  L  L  S  L  R  L  R  R  S  R  T  A  D  L :   L  C  S  L  C  L  D  S  L  F  K  P  L  L  L  E  R  D  H  W  R  T  L  L  I  T  L  Q  T  Q  *  T  T  T  P  G  P  T  P  Q  T  L  S  P  E  N  K  N  L  K  T  F  S  S  F  *  S  F  V  D  H  V  K  L   </first_frame>
            <second_frame>  Q  H  F  S  L  N  I  N  H  G  S  C  C  N  G  S  F  F  P  F  I  C  W  T  G  S  Q  T  L  T  I  C  L  R  K  F  W  K  W  K  D  H  Y  E  K  G  C  R  Q  V  C  P  I  *  Q :   P  K  L  G  P  C  T  K  H  L  G  H  L  G  L  S  S  C  V  D  G  S  R  *  G  I  P  H  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  Q  L  R  P  I  R  P  C  *  R  P  G  G  I  C  *  A  *  G  *  G  D  Q  E  R  Q  T   : C  Y  V  L  Y  V  W  I  L  C  S  S  H  C  Y  W  K  G  T  I  G  E  P  C  *  S  P  C  R  P  S  K  Q  Q  R  L  V  L  R  H  K  L  C  P  R  K  I  K  I  L  K  H  S  Q  V  S  D  H  L  L  T  M  *  S  C  </second_frame>
            <third_frame>   N  T  F  L  L  I  *  I  M  A  A  A  A  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  N  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S   : N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  :  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  S  Y  A  T  N  F  V  P  G  K  *  K  S  *  N  I  L  K  F  L  I  I  C  *  P  C  K  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11371" stop="11230"/>
                    <exon start="8587" stop="8373"/>
                    <exon start="5972" stop="5832"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAAAAMALSSPSFAGQAVKLSPSASENSGNGRITMRKAVAKSAPSSNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="8155" PGL_stop="8897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8155" e_stop="8897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="8155" e_stop="8897" e_length="743"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8155" stop="8550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8159" stop="8670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8160" stop="8889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8160" stop="8645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8408" stop="8897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8460" stop="8813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8483" stop="8813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAATATAAGAAAAATCCATTATATTGTCTAGTAAACTCACAATTACAACTTTACAAGGCCATCAATTTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCAAAGGCCCAGGCATTGTTATTAACTGGATCCGCAAGGTGGTCAGCGAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAACCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTGATCTCCTTAACCTTAAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTATCCCTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAATCAAGTCCACCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCACACAGCCTCACCGAACTTGACACCATTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAAGTTTCAGGGTCAGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCTAAGTACTTAACACGGTCTGGTCCATACCATGGGCTGCTAGA</gDNA_template>
            <first_frame> W  N  I  R  K  I  H  Y  I  V  *  *  T  H  N  Y  N  F  T  R  P  S  I  Y  D  I  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  L  T  G  S  A  R  W  S  A  R  F  S  N  G  P  F  P  V  T  M  A  *  T  K  N  P  N  I  E  N  I  A  S  L  P  F  L  I  S  L  T  L  S  S  A  N  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  M  R  Y  P  S  T  A  P  I  N  T  T  *  Q  A  Q  M  A  K  M  L  C  A  W  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  W  D  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  N  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  Q  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L   </first_frame>
            <second_frame>  G  I  *  E  K  S  I  I  L  S  S  K  L  T  I  T  T  L  Q  G  H  Q  F  M  I  F  I  F  Q  E  Q  S  L  W  Q  R  P  R  H  C  Y  *  L  D  P  Q  G  G  Q  R  G  S  P  M  D  P  F  R  *  Q  W  P  E  Q  R  T  Q  T  *  R  T  *  Q  V  C  R  S  *  S  P  *  P  *  A  Q  Q  M  P  P  G  L  Q  Q  G  L  M  G  R  S  C  H  R  G  R  V  G  R  Q  P  H  Q  E  V  H  Q  Q  C  G  I  P  Q  R  L  P  S  T  Q  L  D  K  P  R  W  P  R  C  F  V  H  G  P  S  L  G  C  P  S  N  Q  V  H  P  R  *  R  S  G  I  Q  P  *  T  T  Q  P  H  R  T  *  H  H  Y  G  P  I  A  Q  G  R  H  I  Q  E  H  Q  A  *  P  I  C  S  G  S  P  Q  V  H  G  S  W  Q  K  F  Q  G  Q  L  K  V  Q  R  Y  P  S  R  S  H  Q  G  I  H  R  S  S  S  L  G  T  H  Q  R  M  G  L  S  T  *  H  G  L  V  H  T  M  G  C  *  </second_frame>
            <third_frame>   E  Y  K  K  N  P  L  Y  C  L  V  N  S  Q  L  Q  L  Y  K  A  I  N  L  *  Y  S  F  S  R  N  K  V  C  G  K  G  P  G  I  V  I  N  W  I  R  K  V  V  S  E  V  L  Q  W  T  L  S  G  N  N  G  L  N  K  E  P  K  H  R  E  H  S  K  S  A  V  L  D  L  L  N  L  K  L  S  K  C  L  R  V  F  S  K  A  *  W  V  E  A  A  T  G  V  E  W  V  D  N  L  T  K  R  S  T  S  N  A  V  S  L  N  G  S  H  Q  H  N  L  T  S  P  D  G  Q  D  A  L  C  M  D  Q  A  W  V  A  Q  V  I  K  S  T  L  A  E  D  L  G  S  S  L  E  P  H  S  L  T  E  L  D  T  I  T  G  Q  *  L  R  E  D  T  S  K  S  T  K  H  S  P  S  A  V  D  H  L  K  F  T  V  L  G  K  S  F  R  V  S  *  K  S  S  G  I  P  A  V  V  T  R  E  F  T  G  Q  V  A  W  G  L  T  R  E  W  A  *  V  L  N  T  V  W  S  I  P  W  A  A  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8442" stop="8681"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVEAATGVEWVDNLTKRSTSNAVSLNGSHQHNLTSPDGQDALCMDQAWVAQVIKSTLAEDLGSSLEPHSLTELDTITGQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8405" stop="8617"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQQMPPGLQQGLMGRSCHRGRVGRQPHQEVHQQCGIPQRLPSTQLDKPRWPRCFVHGPSLGCPSNQVHPR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8229" stop="8441"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSFSRNKVCGKGPGIVINWIRKVVSEVLQWTLSGNNGLNKEPKHREHSKSAVLDLLNLKLSKCLRVFSKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8599" stop="8802"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPPSLKIWDPALNHTASPNLTPLRANSSGKTHPRAPSIAHLQWITSSSRFLAKVSGSAESPAVSQP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="10388" PGL_stop="11420"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10388" e_stop="10967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="10388" e_stop="10967" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10388" stop="10967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10467" stop="10830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10470" stop="10747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10473" stop="10886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCCTTTGGTATAAAAGTGGCAATATTTTTTATTCGTGGCTTTGAAAAATGTAACTCAGGATTACACAATCATTGGAAATTTTGAATATTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTCCAATGGACCCTTTCCAGTAACAATGGCTTGAACGAAGAATCCAAACATCGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCGGCAAATGCCTCAGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATGCGGTAACCTTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGAT</gDNA_template>
            <first_frame> Y  P  L  V  *  K  W  Q  Y  F  L  F  V  A  L  K  N  V  T  Q  D  Y  T  I  I  G  N  F  E  Y  *  K  K  I  I  H  S  N  V  K  *  L  L  T  T  T  L  Q  G  H  Q  T  I  K  F  *  E  C  L  R  F  S  F  S  G  N  K  V  C  G  E  S  P  S  V  V  V  N  G  V  C  K  V  V  S  K  V  F  Q  W  T  L  S  S  N  N  G  L  N  E  E  S  K  H  R  E  H  S  K  S  A  V  L  N  L  L  Y  L  E  L  G  K  C  L  R  V  F  S  K  A  *  W  V  E  A  A  T  G  V  E  W  V  D  N  L  T  K  R  S  T  S  N  A  V  T  F  N  G  S  H  Q  H  N  L  T  S  P  D  G  Q  D  A  L  C  M  D  Q  A  W  V  A  Q  V  V  K  S  T  L  A  E  D  L  G  </first_frame>
            <second_frame>  T  L  W  Y  K  S  G  N  I  F  Y  S  W  L  *  K  M  *  L  R  I  T  Q  S  L  E  I  L  N  I  E  K  K  *  S  I  L  M  S  S  N  Y  *  Q  L  L  Y  K  A  I  K  Q  S  N  F  K  N  V  *  D  F  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  L  T  G  S  A  R  W  S  A  R  F  S  N  G  P  F  P  V  T  M  A  *  T  K  N  P  N  I  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  N  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  M  R  *  P  S  T  A  P  I  N  T  T  *  Q  A  Q  M  A  K  M  L  C  A  W  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  W  D </second_frame>
            <third_frame>   P  F  G  I  K  V  A  I  F  F  I  R  G  F  E  K  C  N  S  G  L  H  N  H  W  K  F  *  I  L  K  K  N  N  P  F  *  C  Q  V  I  T  D  N  Y  F  T  R  P  S  N  N  Q  I  L  R  M  F  K  I  F  I  F  R  E  Q  S  L  W  R  K  P  K  R  C  C  *  R  G  L  Q  G  G  Q  Q  G  F  P  M  D  P  F  Q  *  Q  W  L  E  R  R  I  Q  T  S  R  T  *  Q  V  C  R  S  *  S  P  L  P  *  A  R  Q  M  P  Q  G  L  Q  Q  G  L  M  G  R  S  C  H  R  G  R  V  G  R  Q  P  H  Q  E  V  H  Q  Q  C  G  N  L  Q  R  L  P  S  T  Q  L  D  K  P  R  W  P  R  C  F  V  H  G  P  S  L  G  C  P  S  S  Q  V  H  P  R  *  R  S  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10556" stop="10780"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECLRFSFSGNKVCGESPSVVVNGVCKVVSKVFQWTLSSNNGLNEESKHREHSKSAVLNLLYLELGKCLRVFSKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10744" stop="10956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARQMPQGLQQGLMGRSCHRGRVGRQPHQEVHQQCGNLQRLPSTQLDKPRWPRCFVHGPSLGCPSSQVHPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10474" e_stop="10651"/>
            <exon e_start="10840" e_stop="11420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10474" e_stop="10651" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10652" i_stop="10839" i_length="188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10840" e_stop="11420" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10474" stop="10651"/>
              <exon start="10840" stop="11320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343095" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11139" stop="11420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTGAAAAAAAATAATCCATTCTAATGTCAAGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTTTC : CAATGCGGTAACCTTCAACGGCTCCCATCAACACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCAAACTTTACACCGTTGCGGGCCAAGAGCTCAGGAAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAGGTCTCAGGGTCAGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCGCCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAATTTTCTGAGGCAGATGGTGAGAGTTTGACTGCCTGTCCAGCAAATGAAGGGGAAGAAAGAGCCATTGCAGCAGCTGCCATGATTTATATTAAGAGAAAAGTGTTGAGTATTTTATGGTATTAAATATTGTTG</gDNA_template>
            <first_frame> I  L  K  K  N  N  P  F  *  C  Q  V  I  T  D  N  Y  F  T  R  P  S  N  N  Q  I  L  R  M  F  K  I  F  I  F  R  E  Q  S  L  W  R  K  P  K  R  C  C  *  R  G  L  Q  G  G  Q  Q  G  F   : P  M  R  *  P  S  T  A  P  I  N  T  T  *  Q  A  Q  M  A  K  M  L  C  A  W  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  W  D  P  A  L  N  H  T  A  S  P  N  F  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  Q  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  L  A  T  A  F  L  I  V  I  L  P  F  P  E  F  S  E  A  D  G  E  S  L  T  A  C  P  A  N  E  G  E  E  R  A  I  A  A  A  A  M  I  Y  I  K  R  K  V  L  S  I  L  W  Y  *  I  L  L </first_frame>
            <second_frame>  Y  *  K  K  I  I  H  S  N  V  K  *  L  L  T  T  T  L  Q  G  H  Q  T  I  K  F  *  E  C  L  R  F  S  F  S  G  N  K  V  C  G  E  S  P  S  V  V  V  N  G  V  C  K  V  V  S  K  V  F  :  Q  C  G  N  L  Q  R  L  P  S  T  Q  L  D  K  P  R  W  P  R  C  F  V  H  G  P  S  L  G  C  P  S  S  Q  V  H  P  R  *  R  S  G  I  R  P  *  T  T  Q  P  H  Q  T  L  H  R  C  G  P  R  A  Q  E  R  H  I  Q  E  H  Q  A  *  P  I  C  S  G  S  P  Q  V  H  G  S  W  Q  R  S  Q  G  Q  L  K  V  Q  R  Y  P  S  R  S  H  Q  G  I  R  Q  S  S  S  L  G  T  H  Q  R  M  V  P  S  T  *  H  G  Q  G  H  T  M  G  C  *  M  G  Q  T  W  R  Q  P  F  S  *  *  S  F  H  F  Q  N  F  L  R  Q  M  V  R  V  *  L  P  V  Q  Q  M  K  G  K  K  E  P  L  Q  Q  L  P  *  F  I  L  R  E  K  C  *  V  F  Y  G  I  K  Y  C   </second_frame>
            <third_frame>   I  E  K  K  *  S  I  L  M  S  S  N  Y  *  Q  L  L  Y  K  A  I  K  Q  S  N  F  K  N  V  *  D  F  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  L  T  G  S  A  R  W  S  A  R  F  S :   N  A  V  T  F  N  G  S  H  Q  H  N  L  T  S  P  D  G  Q  D  A  L  C  M  D  Q  A  W  V  A  Q  V  V  K  S  T  L  A  E  D  L  G  S  G  L  E  P  H  S  L  T  K  L  Y  T  V  A  G  Q  E  L  R  K  D  T  S  K  S  T  K  H  S  P  S  A  V  D  H  L  K  F  T  V  L  G  K  G  L  R  V  S  *  K  S  S  G  I  P  A  V  V  T  R  E  F  A  S  Q  V  A  W  G  L  T  R  E  W  S  Q  V  L  N  T  V  R  A  I  P  W  A  A  R  W  G  R  L  G  D  S  L  S  H  S  D  P  S  I  S  R  I  F  *  G  R  W  *  E  F  D  C  L  S  S  K  *  R  G  R  K  S  H  C  S  S  C  H  D  L  Y  *  E  K  S  V  E  Y  F  M  V  L  N  I  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10566" stop="10651"/>
                    <exon start="10840" stop="11116"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFHFPGTKFVAKAQALLLTGSARWSARFSNAVTFNGSHQHNLTSPDGQDALCMDQAWVAQVVKSTLAEDLGSGLEPHSLTKLYTVAGQELRKDTSKSTKHSPSAVDHLKFTVLGKGLRVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11169" stop="11411"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLLDGADLATAFLIVILPFPEFSEADGESLTACPANEGEERAIAAAAMIYIKRKVLSILWY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="13867" PGL_stop="12839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13867" e_stop="12839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="13867" e_stop="12839" e_length="1029"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13867" stop="13412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13864" stop="13338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13863" stop="13128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13862" stop="12920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13862" stop="13004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13862" stop="13426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13861" stop="12979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13861" stop="13305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13860" stop="12938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13860" stop="13221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13860" stop="13305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13859" stop="12968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13859" stop="13012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13859" stop="13337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13857" stop="13322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13855" stop="13103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13855" stop="13303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13854" stop="12985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="12978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13848" stop="13305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13847" stop="13149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13847" stop="13158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13845" stop="12862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="12992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="13110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="12855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="12934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="12936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="12983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="12996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="13182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="13301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13841" stop="12925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13841" stop="13323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13841" stop="13371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13841" stop="13436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13840" stop="13323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13838" stop="13001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13837" stop="13012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13836" stop="13000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13832" stop="13118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13825" stop="13554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13823" stop="13326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13819" stop="13324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13813" stop="13358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13799" stop="13301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13760" stop="12854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13695" stop="13163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13695" stop="13211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13694" stop="12839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13694" stop="12840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13691" stop="13306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13659" stop="13163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13659" stop="13182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13622" stop="13301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13617" stop="12936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13551" stop="13050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13528" stop="12936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13487" stop="13217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13472" stop="12856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13471" stop="12855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13471" stop="12855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13460" stop="12928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13459" stop="12936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13424" stop="12928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13372" stop="12917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283279" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13286" stop="12936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTAATATTTCAATGTTTGTGTAGTACTGAGTAACATCTTACTAAGCTATGAATCAAATGTTGCCACTTTCATAACAAAGGATAATCAAAGAAAGAGAACA</gDNA_template>
            <first_frame> S  K  P  T  S  T  V  S  S  N  T  Y  I  S  L  D  I  N  T  M  A  A  A  T  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  N  F  L  N  N  L  N  I  P  C  K  V  V  V  S  Y  L  T  I  E  W  I  V  F  L  *  Y  F  N  V  C  V  V  L  S  N  I  L  L  S  Y  E  S  N  V  A  T  F  I  T  K  D  N  Q  R  K  R  T </first_frame>
            <second_frame>  Q  N  Q  L  Q  Q  Y  H  Q  T  L  T  F  L  L  I  *  T  Q  W  Q  L  Q  Q  W  L  F  L  P  L  L  L  L  D  R  R  *  N  S  H  P  L  P  Q  K  S  L  E  M  E  G  S  L  *  E  R  L  S  P  S  Q  P  H  L  A  A  H  G  M  A  L  T  V  L  S  T  W  D  H  S  L  V  S  H  Q  A  T  *  P  V  N  S  L  V  T  T  A  G  I  P  L  D  F  Q  Q  T  Q  K  P  L  P  R  T  A  N  L  R  *  S  T  A  D  G  L  C  L  V  L  L  A  V  S  S  L  S  Y  W  L  V  T  A  S  S  S  V  R  L  C  G  S  K  L  D  P  K  S  S  V  R  V  D  L  T  T  W  A  T  Q  A  W  S  M  H  K  A  S  W  P  S  G  L  A  K  L  Y  S  W  E  P  L  K  V  T  V  L  L  V  A  L  L  V  R  L  S  T  H  S  T  L  V  A  A  S  T  H  W  V  L  L  K  T  Q  R  H  L  L  S  S  R  *  R  R  S  R  T  V  D  L  P  C  S  L  C  S  D  S  S  F  K  L  L  L  P  E  R  V  H  W  R  T  L  L  T  T  L  Q  T  P  L  T  T  T  L  G  L  L  P  Q  T  L  S  P  E  N  E  T  F  *  T  I  L  I  F  L  V  K  *  *  *  V  T  *  Q  *  N  G  L  F  F  F  N  I  S  M  F  V  *  Y  *  V  T  S  Y  *  A  M  N  Q  M  L  P  L  S  *  Q  R  I  I  K  E  R  E   </second_frame>
            <third_frame>   K  T  N  F  N  S  I  I  K  H  L  H  F  S  *  Y  K  H  N  G  S  C  N  N  G  S  F  F  P  F  F  C  W  T  G  G  E  T  L  T  L  C  L  R  N  L  W  K  W  K  D  H  Y  E  K  G  C  R  Q  V  S  P  I  *  Q  P  M  V  W  P  *  P  C  *  V  L  G  T  I  L  W  *  V  T  K  L  L  D  R  *  I  P  W  *  L  R  L  G  Y  R  W  T  F  S  R  P  R  N  L  C  Q  E  P  R  T  *  G  D  P  L  Q  M  G  Y  A  W  C  S  W  L  C  L  P  *  A  I  G  S  *  R  R  Q  V  R  *  G  C  V  V  Q  S  W  I  P  N  L  Q  *  G  W  T  *  L  L  G  Q  P  K  L  G  P  C  T  K  H  L  G  H  L  G  L  P  S  C  T  H  G  S  R  *  R  L  P  Y  C  W  W  P  S  W  *  G  C  R  P  T  L  P  W  W  Q  L  R  P  T  G  S  C  *  R  P  R  G  I  C  *  A  Q  G  K  G  D  Q  E  R  *  T  C  H  V  L  Y  V  R  I  L  R  S  S  Y  C  Y  R  K  G  S  I  G  E  P  C  *  P  P  C  R  P  R  *  Q  Q  R  L  G  F  C  H  K  L  C  P  R  K  M  K  L  F  K  Q  S  *  Y  S  L  *  S  S  S  E  L  L  D  N  R  M  D  C  F  S  L  I  F  Q  C  L  C  S  T  E  *  H  L  T  K  L  *  I  K  C  C  H  F  H  N  K  G  *  S  K  K  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13867" stop="13013"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKPTSTVSSNTYISLDINTMAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13867" e_stop="12936"/>
            <exon e_start="12859" e_stop="12846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.612" e_score="0.997"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="13867" e_stop="12936" e_length="932"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.612">
            <gDNA_intron_boundary i_start="12935" i_stop="12860" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.643">
            <gDNA_exon_boundary e_start="12859" e_stop="12846" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13867" stop="13412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13864" stop="13338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13863" stop="13128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13862" stop="13004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13862" stop="13426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13861" stop="12979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13861" stop="13305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13860" stop="12938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13860" stop="13221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13860" stop="13305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13859" stop="12968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13859" stop="13012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13859" stop="13337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13857" stop="13322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13856" stop="13485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13855" stop="13103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13855" stop="13303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13854" stop="12985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13853" stop="12936"/>
              <exon start="12859" stop="12846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="12978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13849" stop="13349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13848" stop="13305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13847" stop="13149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13847" stop="13158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="12992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="13110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="12936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="12983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="12996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="13182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13842" stop="13301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13841" stop="13323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13841" stop="13371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13841" stop="13436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13840" stop="13323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13838" stop="13001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13837" stop="13012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13836" stop="13000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13832" stop="13118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13825" stop="13554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13823" stop="13326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13819" stop="13324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13813" stop="13358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13799" stop="13301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13695" stop="13163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13695" stop="13211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13691" stop="13306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13659" stop="13163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13659" stop="13182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13622" stop="13301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13617" stop="12936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13551" stop="13050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13528" stop="12936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13487" stop="13217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13459" stop="12936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13286" stop="12936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAACCAACTTCAACAGTATCATCAAACACTTACATTTCTCTTGATATAAACACAATGGCAGCTGCAACAATGGCTCTTTCTTCCCCTTCTTTTGCTGGACAGGCGGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACTATGAGAAAGGCTGTCGCCAAGTCAGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACCGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTTTCAGCAGACCCAGAAACCTTTGCCAAGAACCGCGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGCTGTGTCTTCCCTGAGCTATTGGCTCGTAACGGCGTCAAGTTCGGTGAGGCTGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGCCAAGTTGTACTCATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGCCCTCTTGGTGAGGTTGTCGACCCACTCTACCCTGGTGGCAGCTTCGACCCACTGGGTCTTGCTGAAGACCCAGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATCAAGAACGGTAGACTTGCCATGTTCTCTATGTTCGGATTCTTCGTTCAAGCTATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTTGCCACAAACTTTGTCCCCGGAAAATGAAACTTTTTAAACAATCTTAATATTCCTTGTAAAGTAGTAGTGAGTTACTTGACAATAGAATGGATTGTTTTTCTTTA : GATAATCAAAGAAA</gDNA_template>
            <first_frame> S  K  P  T  S  T  V  S  S  N  T  Y  I  S  L  D  I  N  T  M  A  A  A  T  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  N  F  L  N  N  L  N  I  P  C  K  V  V  V  S  Y  L  T  I  E  W  I  V  F  L  * :   I  I  K  E  </first_frame>
            <second_frame>  Q  N  Q  L  Q  Q  Y  H  Q  T  L  T  F  L  L  I  *  T  Q  W  Q  L  Q  Q  W  L  F  L  P  L  L  L  L  D  R  R  *  N  S  H  P  L  P  Q  K  S  L  E  M  E  G  S  L  *  E  R  L  S  P  S  Q  P  H  L  A  A  H  G  M  A  L  T  V  L  S  T  W  D  H  S  L  V  S  H  Q  A  T  *  P  V  N  S  L  V  T  T  A  G  I  P  L  D  F  Q  Q  T  Q  K  P  L  P  R  T  A  N  L  R  *  S  T  A  D  G  L  C  L  V  L  L  A  V  S  S  L  S  Y  W  L  V  T  A  S  S  S  V  R  L  C  G  S  K  L  D  P  K  S  S  V  R  V  D  L  T  T  W  A  T  Q  A  W  S  M  H  K  A  S  W  P  S  G  L  A  K  L  Y  S  W  E  P  L  K  V  T  V  L  L  V  A  L  L  V  R  L  S  T  H  S  T  L  V  A  A  S  T  H  W  V  L  L  K  T  Q  R  H  L  L  S  S  R  *  R  R  S  R  T  V  D  L  P  C  S  L  C  S  D  S  S  F  K  L  L  L  P  E  R  V  H  W  R  T  L  L  T  T  L  Q  T  P  L  T  T  T  L  G  L  L  P  Q  T  L  S  P  E  N  E  T  F  *  T  I  L  I  F  L  V  K  *  *  *  V  T  *  Q  *  N  G  L  F  F  F   : R  *  S  K  K </second_frame>
            <third_frame>   K  T  N  F  N  S  I  I  K  H  L  H  F  S  *  Y  K  H  N  G  S  C  N  N  G  S  F  F  P  F  F  C  W  T  G  G  E  T  L  T  L  C  L  R  N  L  W  K  W  K  D  H  Y  E  K  G  C  R  Q  V  S  P  I  *  Q  P  M  V  W  P  *  P  C  *  V  L  G  T  I  L  W  *  V  T  K  L  L  D  R  *  I  P  W  *  L  R  L  G  Y  R  W  T  F  S  R  P  R  N  L  C  Q  E  P  R  T  *  G  D  P  L  Q  M  G  Y  A  W  C  S  W  L  C  L  P  *  A  I  G  S  *  R  R  Q  V  R  *  G  C  V  V  Q  S  W  I  P  N  L  Q  *  G  W  T  *  L  L  G  Q  P  K  L  G  P  C  T  K  H  L  G  H  L  G  L  P  S  C  T  H  G  S  R  *  R  L  P  Y  C  W  W  P  S  W  *  G  C  R  P  T  L  P  W  W  Q  L  R  P  T  G  S  C  *  R  P  R  G  I  C  *  A  Q  G  K  G  D  Q  E  R  *  T  C  H  V  L  Y  V  R  I  L  R  S  S  Y  C  Y  R  K  G  S  I  G  E  P  C  *  P  P  C  R  P  R  *  Q  Q  R  L  G  F  C  H  K  L  C  P  R  K  M  K  L  F  K  Q  S  *  Y  S  L  *  S  S  S  E  L  L  D  N  R  M  D  C  F  S  L  :  D  N  Q  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13867" stop="13013"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKPTSTVSSNTYISLDINTMAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="12851" PGL_stop="13861"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12851" e_stop="13861"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="12851" e_stop="13861" e_length="1011"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12851" stop="13419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12879" stop="13133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13326" stop="13798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13403" stop="13861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13493" stop="13861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280095" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTATCCTTTGTTATGAAAGTGGCAACATTTGATTCATAGCTTAGTAAGATGTTACTCAGTACTACACAAACATTGAAATATTAAAGAAAAACAATCCATTCTATTGTCAAGTAACTCACTACTACTTTACAAGGAATATTAAGATTGTTTAAAAAGTTTCATTTTCCGGGGACAAAGTTTGTGGCAAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATAGCTTGAACGAAGAATCCGAACATAGAGAACATGGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGACCCAGTGGGTCGAAGCTGCCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGGCCACCAGCAATACGGTAACCTTCAACGGCTCCCATGAGTACAACTTGGCAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGGGATCCAGCTTTGAACCACACAGCCTCACCGAACTTGACGCCGTTACGAGCCAATAGCTCAGGGAAGACACAGCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCGCGGTTCTTGGCAAAGGTTTCTGGGTCTGCTGAAAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGTGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCTGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACCGCCTGTCCAGCAAAAGAAGGGGAAGAAAGAGCCATTGTTGCAGCTGCCATTGTGTTTATATCAAGAGAAATGTAAGTGTTTGATGATACTGTTGAAGTTGG</gDNA_template>
            <first_frame> L  I  I  L  C  Y  E  S  G  N  I  *  F  I  A  *  *  D  V  T  Q  Y  Y  T  N  I  E  I  L  K  K  N  N  P  F  Y  C  Q  V  T  H  Y  Y  F  T  R  N  I  K  I  V  *  K  V  S  F  S  G  D  K  V  C  G  K  S  P  S  V  V  V  N  G  V  C  K  V  V  S  K  V  L  Q  W  T  L  S  G  N  N  S  L  N  E  E  S  E  H  R  E  H  G  K  S  T  V  L  D  L  L  Y  L  E  L  S  K  C  L  W  V  F  S  K  T  Q  W  V  E  A  A  T  R  V  E  W  V  D  N  L  T  K  R  A  T  S  N  T  V  T  F  N  G  S  H  E  Y  N  L  A  S  P  D  G  Q  D  A  L  C  M  D  Q  A  W  V  A  Q  V  V  K  S  T  L  T  E  D  L  G  S  S  F  E  P  H  S  L  T  E  L  D  A  V  T  S  Q  *  L  R  E  D  T  A  K  S  T  K  H  S  P  S  A  V  D  H  L  K  F  A  V  L  G  K  G  F  W  V  C  *  K  S  S  G  I  P  A  V  V  T  R  E  F  T  G  Q  V  A  W  *  L  T  R  E  W  S  Q  V  L  N  T  V  R  A  I  P  W  A  A  R  W  G  *  L  G  D  S  L  S  H  S  D  P  S  I  S  R  D  F  *  G  R  G  *  E  F  H  R  L  S  S  K  R  R  G  R  K  S  H  C  C  S  C  H  C  V  Y  I  K  R  N  V  S  V  *  *  Y  C  *  S  W </first_frame>
            <second_frame>  *  L  S  F  V  M  K  V  A  T  F  D  S  *  L  S  K  M  L  L  S  T  T  Q  T  L  K  Y  *  R  K  T  I  H  S  I  V  K  *  L  T  T  T  L  Q  G  I  L  R  L  F  K  K  F  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  L  T  G  S  A  R  W  S  A  R  F  S  N  G  P  F  P  V  T  I  A  *  T  K  N  P  N  I  E  N  M  A  S  L  P  F  L  I  S  F  T  L  S  S  A  N  A  S  G  S  S  A  R  P  S  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  M  S  T  T  W  Q  A  Q  M  A  K  M  L  C  A  W  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  W  D  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  N  S  S  G  K  T  Q  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  Q  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  L  A  T  A  F  L  I  V  I  L  P  F  P  E  I  S  E  A  E  G  E  S  F  T  A  C  P  A  K  E  G  E  E  R  A  I  V  A  A  A  I  V  F  I  S  R  E  M  *  V  F  D  D  T  V  E  V   </second_frame>
            <third_frame>   D  Y  P  L  L  *  K  W  Q  H  L  I  H  S  L  V  R  C  Y  S  V  L  H  K  H  *  N  I  K  E  K  Q  S  I  L  L  S  S  N  S  L  L  L  Y  K  E  Y  *  D  C  L  K  S  F  I  F  R  G  Q  S  L  W  Q  K  P  K  R  C  C  *  R  G  L  Q  G  G  Q  Q  G  S  P  M  D  P  F  R  *  Q  *  L  E  R  R  I  R  T  *  R  T  W  Q  V  Y  R  S  *  S  P  L  P  *  A  Q  Q  M  P  L  G  L  Q  Q  D  P  V  G  R  S  C  H  Q  G  R  V  G  R  Q  P  H  Q  E  G  H  Q  Q  Y  G  N  L  Q  R  L  P  *  V  Q  L  G  K  P  R  W  P  R  C  F  V  H  G  P  S  L  G  C  P  S  S  Q  V  H  P  H  *  R  F  G  I  Q  L  *  T  T  Q  P  H  R  T  *  R  R  Y  E  P  I  A  Q  G  R  H  S  Q  E  H  Q  A  *  P  I  C  S  G  S  P  Q  V  R  G  S  W  Q  R  F  L  G  L  L  K  V  Q  R  Y  P  S  R  S  H  Q  G  I  H  R  S  S  S  L  V  T  H  Q  R  M  V  P  S  T  *  H  G  Q  G  H  T  M  G  C  *  M  G  L  T  W  R  Q  P  F  S  *  *  S  F  H  F  Q  R  F  L  R  Q  R  V  R  V  S  P  P  V  Q  Q  K  K  G  K  K  E  P  L  L  Q  L  P  L  C  L  Y  Q  E  K  C  K  C  L  M  I  L  L  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13007" stop="13462"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVSFSGDKVCGKSPSVVVNGVCKVVSKVLQWTLSGNNSLNEESEHREHGKSTVLDLLYLELSKCLWVFSKTQWVEAATRVEWVDNLTKRATSNTVTFNGSHEYNLASPDGQDALCMDQAWVAQVVKSTLTEDLGSSFEPHSLTELDAVTSQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13611" stop="13835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLLDGADLATAFLIVILPFPEISEAEGESFTACPAKEGEERAIVAAAIVFISREM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="20956" PGL_stop="19897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20956" e_stop="19897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20956" e_stop="19897" e_length="1060"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20956" stop="20148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20954" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20954" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20954" stop="20081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20954" stop="20229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20953" stop="20134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20953" stop="20197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20953" stop="20271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20952" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20952" stop="20224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20951" stop="20274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20951" stop="20364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20950" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20950" stop="20391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20949" stop="19990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20949" stop="20227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20949" stop="20269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20949" stop="20362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20948" stop="20326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20947" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20947" stop="20379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20947" stop="20423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20947" stop="20544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20946" stop="20118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20946" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20946" stop="20234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20945" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20944" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20944" stop="20079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20944" stop="20270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20944" stop="20316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20944" stop="20376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20944" stop="20409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20943" stop="20086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20943" stop="20198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20943" stop="20516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20942" stop="19990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20942" stop="20346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20942" stop="20544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20941" stop="19997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20941" stop="20088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20941" stop="20130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20941" stop="20373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20940" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20940" stop="20079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20940" stop="20274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20940" stop="20370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20940" stop="20502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20940" stop="20656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20939" stop="20272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20935" stop="20121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20931" stop="20533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20930" stop="19995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20930" stop="20056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20930" stop="20544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20928" stop="20058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20925" stop="20508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20920" stop="20542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20901" stop="20051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20892" stop="20255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20888" stop="20355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20886" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20885" stop="20165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20883" stop="20123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20872" stop="20077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20856" stop="20591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20825" stop="19990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20823" stop="20008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20823" stop="20059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20785" stop="20329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20674" stop="19989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20660" stop="19948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20651" stop="19948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20651" stop="19948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20651" stop="19948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20651" stop="19948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20631" stop="20000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20595" stop="19999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20586" stop="20127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20526" stop="19999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20364" stop="20018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20347" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20339" stop="20007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20332" stop="19991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20321" stop="19997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20264" stop="20081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20241" stop="19985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20209" stop="19997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20127" stop="19897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGCCTTCAACAATATTTAATACCATAAAATACTCAACACTTTTCTCTTAATATAAATCATGGCAGCTGCTACAATGGCTCTTTCTTCCCCTTCATTTGCTGGACAGGCAGTCAAACTCTCACCATCTGCCTCAGAAATTTCTGGAAATGGAAGAATCACTATGAGAAAGGCTGTCGCCAAGTCTGCCCCATCTAGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGACCATTCTCTGGTGAGTCACCAAGCTACTTGACTGGCGAATTCCCTGGTGACTATGGATGGGATACCGCTGGACTTTCAGCTGACCCCGAGACCTTTGCCAAGAACCGTGAACTTGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTCTTGGCCCGTAATGGTGTCAAATTTGGTGAAGCTGTGTGGTTCAAGGCCGGTTCCCAGATTTTCAGCGAGGGTGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAAAGCATCTTGGCCATCTGGGCTTGTCAAGTTGTACTGATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCGGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATTGTTACCGGAAAGGGTCCATTGGAGAATCTTGCTGACCACCTTGCAGATCCAGTTAACAACAATGCATGGGCCTTTGCCACAAACTTTGTTCCCGGCAAATGAATATCATAAAATGTTCTCTAGATATTATTGTTTGATGGCTTTGTAAAGTTTTAGTTGTGAGTTTACTTGACAATAGAATGATTTTTTCTTAGTCCTGAATTTCATTTGATGAATGAAATACTGCAAAATTCATATTGAAGGGGAAAATTGATGACGAAGCAAAATTAACAAGACCAGAGTTAAATTTGAGGTGTGGTAAAA</gDNA_template>
            <first_frame> H  S  L  Q  Q  Y  L  I  P  *  N  T  Q  H  F  S  L  N  I  N  H  G  S  C  Y  N  G  S  F  F  P  F  I  C  W  T  G  S  Q  T  L  T  I  C  L  R  N  F  W  K  W  K  N  H  Y  E  K  G  C  R  Q  V  C  P  I  *  Q  P  M  V  W  P  *  P  C  *  V  L  G  T  I  L  W  *  V  T  K  L  L  D  W  R  I  P  W  *  L  W  M  G  Y  R  W  T  F  S  *  P  R  D  L  C  Q  E  P  *  T  *  G  D  P  L  Q  M  G  Y  A  W  C  S  W  M  C  L  P  *  A  L  G  P  *  W  C  Q  I  W  *  S  C  V  V  Q  G  R  F  P  D  F  Q  R  G  W  T  *  L  L  G  Q  P  K  L  G  P  C  T  K  H  L  G  H  L  G  L  S  S  C  T  D  G  S  C  *  G  L  P  Y  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  Q  L  R  P  I  R  P  C  *  R  P  G  G  I  C  *  A  Q  G  K  G  D  *  E  R  Q  T  C  Y  V  L  Y  V  W  I  L  C  S  S  H  C  Y  R  K  G  S  I  G  E  S  C  *  P  P  C  R  S  S  *  Q  Q  C  M  G  L  C  H  K  L  C  S  R  Q  M  N  I  I  K  C  S  L  D  I  I  V  *  W  L  C  K  V  L  V  V  S  L  L  D  N  R  M  I  F  S  *  S  *  I  S  F  D  E  *  N  T  A  K  F  I  L  K  G  K  I  D  D  E  A  K  L  T  R  P  E  L  N  L  R  C  G  K  </first_frame>
            <second_frame>  T  A  F  N  N  I  *  Y  H  K  I  L  N  T  F  L  L  I  *  I  M  A  A  A  T  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  I  S  *  N  V  L  *  I  L  L  F  D  G  F  V  K  F  *  L  *  V  Y  L  T  I  E  *  F  F  L  S  P  E  F  H  L  M  N  E  I  L  Q  N  S  Y  *  R  G  K  L  M  T  K  Q  N  *  Q  D  Q  S  *  I  *  G  V  V  K </second_frame>
            <third_frame>   Q  P  S  T  I  F  N  T  I  K  Y  S  T  L  F  S  *  Y  K  S  W  Q  L  L  Q  W  L  F  L  P  L  H  L  L  D  R  Q  S  N  S  H  H  L  P  Q  K  F  L  E  M  E  E  S  L  *  E  R  L  S  P  S  L  P  H  L  A  A  H  G  M  A  L  T  V  L  S  T  W  D  H  S  L  V  S  H  Q  A  T  *  L  A  N  S  L  V  T  M  D  G  I  P  L  D  F  Q  L  T  P  R  P  L  P  R  T  V  N  L  R  *  S  T  A  D  G  L  C  L  V  L  L  D  V  S  S  L  S  S  W  P  V  M  V  S  N  L  V  K  L  C  G  S  R  P  V  P  R  F  S  A  R  V  D  L  T  T  W  A  T  Q  A  W  S  M  H  K  A  S  W  P  S  G  L  V  K  L  Y  *  W  E  L  L  R  V  T  V  L  L  V  D  L  L  V  R  L  S  T  H  S  T  Q  V  A  A  S  T  H  *  A  L  L  K  T  R  R  H  L  L  S  S  R  *  R  R  L  R  T  A  D  L  L  C  S  L  C  L  D  S  L  F  K  P  L  L  P  E  R  V  H  W  R  I  L  L  T  T  L  Q  I  Q  L  T  T  M  H  G  P  L  P  Q  T  L  F  P  A  N  E  Y  H  K  M  F  S  R  Y  Y  C  L  M  A  L  *  S  F  S  C  E  F  T  *  Q  *  N  D  F  F  L  V  L  N  F  I  *  *  M  K  Y  C  K  I  H  I  E  G  E  N  *  *  R  S  K  I  N  K  T  R  V  K  F  E  V  W  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20898" stop="20098"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="19939" PGL_stop="20785"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19939" e_stop="20785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="19939" e_stop="20785" e_length="847"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19939" stop="20451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20001" stop="20418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20056" stop="20543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20507" stop="20785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCGTCATCAATTTTCCCCTTCAATATGAATTTTGCAGTATTTCATTCATCAAATGAAATTCAGGACTAAGAAAAAATCATTCTATTGTCAAGTAAACTCACAACTAAAACTTTACAAAGCCATCAAACAATAATATCTAGAGAACATTTTATGATATTCATTTGCCGGGAACAAAGTTTGTGGCAAAGGCCCATGCATTGTTGTTAACTGGATCTGCAAGGTGGTCAGCAAGATTCTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCCTCAACAGCTCCCATCAGTACAACTTGACAAGCCCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAAATCTGGGAACCGGCCTTGAACCACACAGCTTCACCAAATTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAGGTCTCGGGGTCAGCTGAAAGTCCAGCGGTATCCCATCCATAGTCACCAGGGAATTCGCCAGTCAAGTAGCTTGGTGACTCACCAGAGAATGGTCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTGCTAGATGGGGCAGACTTGGCGACAGCC</gDNA_template>
            <first_frame> L  R  H  Q  F  S  P  S  I  *  I  L  Q  Y  F  I  H  Q  M  K  F  R  T  K  K  K  S  F  Y  C  Q  V  N  S  Q  L  K  L  Y  K  A  I  K  Q  *  Y  L  E  N  I  L  *  Y  S  F  A  G  N  K  V  C  G  K  G  P  C  I  V  V  N  W  I  C  K  V  V  S  K  I  L  Q  W  T  L  S  G  N  N  G  L  N  K  E  S  K  H  R  E  H  S  K  S  A  V  L  N  L  L  Y  L  E  L  S  K  C  L  R  V  F  S  K  A  *  W  V  E  A  A  T  W  V  E  W  V  D  N  L  T  K  R  S  T  S  N  T  V  T  L  N  S  S  H  Q  Y  N  L  T  S  P  D  G  Q  D  A  L  C  M  D  Q  A  W  V  A  Q  V  V  K  S  T  L  A  E  N  L  G  T  G  L  E  P  H  S  F  T  K  F  D  T  I  T  G  Q  E  L  R  E  D  T  S  K  S  T  K  H  S  P  S  A  V  D  H  L  K  F  T  V  L  G  K  G  L  G  V  S  *  K  S  S  G  I  P  S  I  V  T  R  E  F  A  S  Q  V  A  W  *  L  T  R  E  W  S  Q  V  L  N  T  V  R  A  I  P  W  A  A  R  W  G  R  L  G  D  S  </first_frame>
            <second_frame>  F  V  I  N  F  P  L  Q  Y  E  F  C  S  I  S  F  I  K  *  N  S  G  L  R  K  N  H  S  I  V  K  *  T  H  N  *  N  F  T  K  P  S  N  N  N  I  *  R  T  F  Y  D  I  H  L  P  G  T  K  F  V  A  K  A  H  A  L  L  L  T  G  S  A  R  W  S  A  R  F  S  N  G  P  F  P  V  T  M  A  *  T  K  N  P  N  I  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  N  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  S  T  T  *  Q  A  Q  M  A  K  M  L  C  A  W  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  W  E  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  K  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  H  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  L  A  T  A </second_frame>
            <third_frame>   S  S  S  I  F  P  F  N  M  N  F  A  V  F  H  S  S  N  E  I  Q  D  *  E  K  I  I  L  L  S  S  K  L  T  T  K  T  L  Q  S  H  Q  T  I  I  S  R  E  H  F  M  I  F  I  C  R  E  Q  S  L  W  Q  R  P  M  H  C  C  *  L  D  L  Q  G  G  Q  Q  D  S  P  M  D  P  F  R  *  Q  W  L  E  Q  R  I  Q  T  *  R  T  *  Q  V  C  R  S  *  S  P  L  P  *  A  Q  Q  M  P  P  G  L  Q  Q  G  L  M  G  R  S  C  H  L  G  R  V  G  R  Q  P  H  Q  E  V  H  Q  Q  Y  G  N  P  Q  Q  L  P  S  V  Q  L  D  K  P  R  W  P  R  C  F  V  H  G  P  S  L  G  C  P  S  S  Q  V  H  P  R  *  K  S  G  N  R  P  *  T  T  Q  L  H  Q  I  *  H  H  Y  G  P  R  A  Q  G  R  H  I  Q  E  H  Q  A  *  P  I  C  S  G  S  P  Q  V  H  G  S  W  Q  R  S  R  G  Q  L  K  V  Q  R  Y  P  I  H  S  H  Q  G  I  R  Q  S  S  S  L  V  T  H  Q  R  M  V  P  S  T  *  H  G  Q  G  H  T  M  G  C  *  M  G  Q  T  W  R  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20308" stop="20643"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVEAATWVEWVDNLTKRSTSNTVTLNSSHQYNLTSPDGQDALCMDQAWVAQVVKSTLAENLGTGLEPHSFTKFDTITGQELREDTSKSTKHSPSAVDHLKFTVLGKGLGVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20095" stop="20307"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSFAGNKVCGKGPCIVVNWICKVVSKILQWTLSGNNGLNKESKHREHSKSAVLNLLYLELSKCLRVFSKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="23283" PGL_stop="22221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23283" e_stop="22221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="23283" e_stop="22221" e_length="1063"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23283" stop="22622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23276" stop="22409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23271" stop="22331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23271" stop="22644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23271" stop="22836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23270" stop="22590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23270" stop="23003"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22651" stop="22341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22649" stop="22257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22642" stop="22341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22641" stop="22341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22639" stop="22341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22633" stop="22251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22619" stop="22341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22616" stop="22334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22609" stop="22251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22596" stop="22221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22547" stop="22276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22521" stop="22256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22438" stop="22251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224445" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACAACTAACTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAAAGAGAACAGAACAAAAAAGAGTGAAGATACAT</gDNA_template>
            <first_frame> S  Q  L  T  F  T  Y  Q  T  S  N  S  L  I  F  L  S  L  K  T  M  A  A  A  T  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  I  S  *  Y  I  F  *  I  L  I  V  *  W  P  C  K  V  V  V  T  *  *  N  G  F  F  F  Q  N  S  Y  D  C  V  V  L  S  Y  I  F  Q  S  Y  E  S  N  I  A  T  F  I  P  K  G  K  L  K  K  E  N  R  T  K  K  S  E  D  T  </first_frame>
            <second_frame>  H  N  *  L  L  H  I  K  L  A  T  P  S  F  S  S  L  *  K  P  W  Q  L  L  Q  W  L  F  L  L  L  L  L  P  D  R  Q  *  N  S  H  P  L  P  Q  K  S  L  E  M  E  G  S  P  *  E  R  L  L  P  S  L  P  H  L  A  V  H  G  M  A  L  T  V  L  S  T  W  A  H  S  L  V  S  P  Q  A  T  *  L  V  N  S  L  V  T  T  A  G  I  P  L  D  S  Q  Q  T  L  K  P  L  P  R  T  V  N  S  R  *  S  T  A  D  G  L  C  L  V  L  L  D  V  S  S  L  S  Y  W  P  V  T  V  S  S  S  V  R  L  C  G  S  R  P  D  P  R  S  S  A  R  E  D  L  T  T  W  A  T  Q  A  W  S  M  H  R  A  S  *  P  S  G  L  A  K  L  S  *  W  E  P  L  K  V  T  V  L  L  V  D  L  L  V  R  L  S  T  H  S  T  P  V  A  A  S  T  H  *  A  L  L  K  T  P  R  H  L  L  S  S  R  *  R  R  L  R  T  A  D  L  L  C  S  L  C  S  D  S  L  F  R  P  L  L  P  E  R  V  H  W  R  T  L  L  T  T  L  Q  T  P  L  T  T  T  L  G  L  S  P  Q  T  L  S  P  E  N  E  Y  H  N  I  F  F  E  F  *  L  F  D  G  P  V  K  *  L  *  L  N  R  M  D  F  F  F  K  I  P  M  I  V  *  F  *  V  T  F  S  K  A  M  N  Q  I  L  P  L  S  Y  Q  R  G  N  *  R  K  R  T  E  Q  K  R  V  K  I  H </second_frame>
            <third_frame>   T  T  N  F  Y  I  S  N  *  Q  L  P  H  F  P  L  F  K  N  H  G  S  C  Y  N  G  S  F  F  S  F  F  C  R  T  G  S  E  T  L  T  L  C  L  R  N  L  W  K  W  K  D  H  H  E  K  G  C  C  Q  V  C  P  I  *  Q  S  M  V  W  P  *  P  C  *  V  L  G  P  I  L  W  *  V  P  K  L  L  D  W  *  I  P  W  *  L  R  L  G  Y  R  W  T  L  S  R  P  *  N  L  C  Q  E  P  *  T  R  G  D  P  L  Q  M  G  Y  A  W  C  S  W  M  C  L  P  *  A  I  G  P  *  R  C  Q  V  R  *  G  C  V  V  Q  G  R  I  P  D  L  Q  R  G  R  T  *  L  L  G  Q  P  K  L  G  P  C  T  E  H  L  S  H  L  G  L  P  S  C  L  D  G  S  R  *  R  L  P  Y  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  Q  L  R  P  I  R  P  C  *  R  P  R  G  I  C  *  A  Q  G  K  G  D  *  E  R  Q  T  C  Y  V  L  Y  V  R  I  L  C  S  G  H  C  Y  R  K  G  S  I  G  E  P  C  *  P  P  C  R  P  R  *  Q  Q  R  L  G  F  R  H  K  L  C  P  R  K  M  N  I  I  I  Y  F  L  N  F  D  C  L  M  A  L  *  S  S  C  D  L  I  E  W  I  F  F  S  K  F  L  *  L  C  S  S  E  L  H  F  P  K  L  *  I  K  Y  C  H  F  H  T  K  G  E  I  K  E  R  E  Q  N  K  K  E  *  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23283" stop="22426"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQLTFTYQTSNSLIFLSLKTMAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23283" e_stop="22396"/>
            <exon e_start="22266" e_stop="22252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.492" e_score="0.997"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="23283" e_stop="22396" e_length="888"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.492">
            <gDNA_intron_boundary i_start="22395" i_stop="22267" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="22266" e_stop="22252" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23283" stop="22622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23276" stop="22409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23271" stop="22644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23271" stop="22836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23270" stop="22590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23270" stop="23003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23269" stop="22401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23269" stop="22494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23269" stop="22716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23269" stop="22751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23269" stop="22921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23268" stop="22745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23268" stop="22764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23268" stop="22819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23265" stop="22396"/>
              <exon start="22266" stop="22252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23265" stop="22539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23265" stop="22597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23262" stop="22405"/>
            </gDNA_exon_coordinates>
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          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22895" stop="22406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACAACTAACTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAGACCCCGAGGCATTTGCTGAGCTCAAGGTAAAGGAGATTAAGAACGGCAGACTTGCTATGTTCTCTATGTTCGGATTCTTTGTTCAGGCCATTGTTACCGGAAAGGGTCCATTGGAGAACCTTGCTGACCACCTTGCAGACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATT : GGGAAATTAAAGAAA</gDNA_template>
            <first_frame> S  Q  L  T  F  T  Y  Q  T  S  N  S  L  I  F  L  S  L  K  T  M  A  A  A  T  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E  D  P  E  A  F  A  E  L  K  V  K  E  I  K  N  G  R  L  A  M  F  S  M  F  G  F  F  V  Q  A  I  V  T  G  K  G  P  L  E  N  L  A  D  H  L  A  D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  I  S  *  Y  I  F  *  I  L  I  :  G  K  L  K  K </first_frame>
            <second_frame>  H  N  *  L  L  H  I  K  L  A  T  P  S  F  S  S  L  *  K  P  W  Q  L  L  Q  W  L  F  L  L  L  L  L  P  D  R  Q  *  N  S  H  P  L  P  Q  K  S  L  E  M  E  G  S  P  *  E  R  L  L  P  S  L  P  H  L  A  V  H  G  M  A  L  T  V  L  S  T  W  A  H  S  L  V  S  P  Q  A  T  *  L  V  N  S  L  V  T  T  A  G  I  P  L  D  S  Q  Q  T  L  K  P  L  P  R  T  V  N  S  R  *  S  T  A  D  G  L  C  L  V  L  L  D  V  S  S  L  S  Y  W  P  V  T  V  S  S  S  V  R  L  C  G  S  R  P  D  P  R  S  S  A  R  E  D  L  T  T  W  A  T  Q  A  W  S  M  H  R  A  S  *  P  S  G  L  A  K  L  S  *  W  E  P  L  K  V  T  V  L  L  V  D  L  L  V  R  L  S  T  H  S  T  P  V  A  A  S  T  H  *  A  L  L  K  T  P  R  H  L  L  S  S  R  *  R  R  L  R  T  A  D  L  L  C  S  L  C  S  D  S  L  F  R  P  L  L  P  E  R  V  H  W  R  T  L  L  T  T  L  Q  T  P  L  T  T  T  L  G  L  S  P  Q  T  L  S  P  E  N  E  Y  H  N  I  F  F  E  F  *  L :   G  N  *  R   </second_frame>
            <third_frame>   T  T  N  F  Y  I  S  N  *  Q  L  P  H  F  P  L  F  K  N  H  G  S  C  Y  N  G  S  F  F  S  F  F  C  R  T  G  S  E  T  L  T  L  C  L  R  N  L  W  K  W  K  D  H  H  E  K  G  C  C  Q  V  C  P  I  *  Q  S  M  V  W  P  *  P  C  *  V  L  G  P  I  L  W  *  V  P  K  L  L  D  W  *  I  P  W  *  L  R  L  G  Y  R  W  T  L  S  R  P  *  N  L  C  Q  E  P  *  T  R  G  D  P  L  Q  M  G  Y  A  W  C  S  W  M  C  L  P  *  A  I  G  P  *  R  C  Q  V  R  *  G  C  V  V  Q  G  R  I  P  D  L  Q  R  G  R  T  *  L  L  G  Q  P  K  L  G  P  C  T  E  H  L  S  H  L  G  L  P  S  C  L  D  G  S  R  *  R  L  P  Y  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  Q  L  R  P  I  R  P  C  *  R  P  R  G  I  C  *  A  Q  G  K  G  D  *  E  R  Q  T  C  Y  V  L  Y  V  R  I  L  C  S  G  H  C  Y  R  K  G  S  I  G  E  P  C  *  P  P  C  R  P  R  *  Q  Q  R  L  G  F  R  H  K  L  C  P  R  K  M  N  I  I  I  Y  F  L  N  F  D   : W  E  I  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23283" stop="22426"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQLTFTYQTSNSLIFLSLKTMAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23283" e_stop="22620"/>
            <exon e_start="22481" e_stop="22251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="23283" e_stop="22620" e_length="664"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22619" i_stop="22482" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="22481" e_stop="22251" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23283" stop="22622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23273" stop="22752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23271" stop="22644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23271" stop="22836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23270" stop="23003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23269" stop="22716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23269" stop="22751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23269" stop="22921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23268" stop="22745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23268" stop="22764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23268" stop="22819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23264" stop="22789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23262" stop="22664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23262" stop="22714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23262" stop="22716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23262" stop="22716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23262" stop="22717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23262" stop="22738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23262" stop="22878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23262" stop="22982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23262" stop="23019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23261" stop="22715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23261" stop="22718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23261" stop="22831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23261" stop="22840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23261" stop="22866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23261" stop="22867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23261" stop="22869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23261" stop="22970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23258" stop="22677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23258" stop="22709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23258" stop="22775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23258" stop="22890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23257" stop="22716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23257" stop="22732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23257" stop="22736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23257" stop="22873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23257" stop="22886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23256" stop="22623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23256" stop="22878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23255" stop="22738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23254" stop="22716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23254" stop="22717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23254" stop="22737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23253" stop="22620"/>
              <exon start="22481" stop="22405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23253" stop="22780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23251" stop="22755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23251" stop="23013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23249" stop="22834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23248" stop="22717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23247" stop="22962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23246" stop="22680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23245" stop="22659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23243" stop="22739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23243" stop="22752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23243" stop="22871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23240" stop="22762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23239" stop="22716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23233" stop="22698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23232" stop="22658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23231" stop="22714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23227" stop="22805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23227" stop="22938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23220" stop="22636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E199957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23216" stop="22679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23215" stop="22996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23213" stop="22708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23212" stop="22674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23212" stop="22679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23212" stop="22777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23209" stop="22774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23194" stop="22997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23190" stop="22716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23149" stop="22755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23134" stop="22692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23133" stop="22622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23129" stop="22685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23108" stop="22740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23100" stop="22622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23061" stop="22718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23006" stop="22719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22438" stop="22251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224445" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACAACTAACTTTTACATATCAAACTAGCAACTCCCTCATTTTCCTCTCTTTAAAAACCATGGCAGCTGCTACAATGGCTCTTTCTTCTCCTTCTTTTGCCGGACAGGCAGTGAAACTCTCACCCTCTGCCTCAGAAATCTCTGGAAATGGAAGGATCACCATGAGAAAGGCTGTTGCCAAGTCTGCCCCATCTAGCAGTCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGTCCCCAAGCTACTTGACTGGTGAATTCCCTGGTGACTACGGCTGGGATACCGCTGGACTCTCAGCAGACCCTGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCTATGCTTGGTGCTCTTGGATGTGTCTTCCCTGAGCTATTGGCCCGTAACGGTGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCCGGATCCCAGATCTTCAGCGAGGGAGGACTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCACAGAGCATCTTAGCCATCTGGGCTTGCCAAGTTGTCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTCGACCCACTCTACCCCGGTGGCAGCTTCGACCCATTAGGCCTTGCTGAAG : ACCCCGTTAACAACAACGCTTGGGCTTTCGCCACAAACTTTGTCCCCGGAAAATGAATATCATAATATATTTTTTGAATTTTGATTGTTTGATGGCCCTGTAAAGTAGTTGTGACTTAATAGAATGGATTTTTTTTTCAAAATTCCTATGATTGTGTAGTTCTGAGTTACATTTTCCAAAGCTATGAATCAAATATTGCCACTTTCATACCAAAGGGGAAATTAAAGAAAG</gDNA_template>
            <first_frame> S  Q  L  T  F  T  Y  Q  T  S  N  S  L  I  F  L  S  L  K  T  M  A  A  A  T  M  A  L  S  S  P  S  F  A  G  Q  A  V  K  L  S  P  S  A  S  E  I  S  G  N  G  R  I  T  M  R  K  A  V  A  K  S  A  P  S  S  S  P  W  Y  G  P  D  R  V  K  Y  L  G  P  F  S  G  E  S  P  S  Y  L  T  G  E  F  P  G  D  Y  G  W  D  T  A  G  L  S  A  D  P  E  T  F  A  K  N  R  E  L  E  V  I  H  C  R  W  A  M  L  G  A  L  G  C  V  F  P  E  L  L  A  R  N  G  V  K  F  G  E  A  V  W  F  K  A  G  S  Q  I  F  S  E  G  G  L  D  Y  L  G  N  P  S  L  V  H  A  Q  S  I  L  A  I  W  A  C  Q  V  V  L  M  G  A  V  E  G  Y  R  I  A  G  G  P  L  G  E  V  V  D  P  L  Y  P  G  G  S  F  D  P  L  G  L  A  E   : D  P  V  N  N  N  A  W  A  F  A  T  N  F  V  P  G  K  *  I  S  *  Y  I  F  *  I  L  I  V  *  W  P  C  K  V  V  V  T  *  *  N  G  F  F  F  Q  N  S  Y  D  C  V  V  L  S  Y  I  F  Q  S  Y  E  S  N  I  A  T  F  I  P  K  G  K  L  K  K  </first_frame>
            <second_frame>  H  N  *  L  L  H  I  K  L  A  T  P  S  F  S  S  L  *  K  P  W  Q  L  L  Q  W  L  F  L  L  L  L  L  P  D  R  Q  *  N  S  H  P  L  P  Q  K  S  L  E  M  E  G  S  P  *  E  R  L  L  P  S  L  P  H  L  A  V  H  G  M  A  L  T  V  L  S  T  W  A  H  S  L  V  S  P  Q  A  T  *  L  V  N  S  L  V  T  T  A  G  I  P  L  D  S  Q  Q  T  L  K  P  L  P  R  T  V  N  S  R  *  S  T  A  D  G  L  C  L  V  L  L  D  V  S  S  L  S  Y  W  P  V  T  V  S  S  S  V  R  L  C  G  S  R  P  D  P  R  S  S  A  R  E  D  L  T  T  W  A  T  Q  A  W  S  M  H  R  A  S  *  P  S  G  L  A  K  L  S  *  W  E  P  L  K  V  T  V  L  L  V  D  L  L  V  R  L  S  T  H  S  T  P  V  A  A  S  T  H  *  A  L  L  K  :  T  P  L  T  T  T  L  G  L  S  P  Q  T  L  S  P  E  N  E  Y  H  N  I  F  F  E  F  *  L  F  D  G  P  V  K  *  L  *  L  N  R  M  D  F  F  F  K  I  P  M  I  V  *  F  *  V  T  F  S  K  A  M  N  Q  I  L  P  L  S  Y  Q  R  G  N  *  R  K </second_frame>
            <third_frame>   T  T  N  F  Y  I  S  N  *  Q  L  P  H  F  P  L  F  K  N  H  G  S  C  Y  N  G  S  F  F  S  F  F  C  R  T  G  S  E  T  L  T  L  C  L  R  N  L  W  K  W  K  D  H  H  E  K  G  C  C  Q  V  C  P  I  *  Q  S  M  V  W  P  *  P  C  *  V  L  G  P  I  L  W  *  V  P  K  L  L  D  W  *  I  P  W  *  L  R  L  G  Y  R  W  T  L  S  R  P  *  N  L  C  Q  E  P  *  T  R  G  D  P  L  Q  M  G  Y  A  W  C  S  W  M  C  L  P  *  A  I  G  P  *  R  C  Q  V  R  *  G  C  V  V  Q  G  R  I  P  D  L  Q  R  G  R  T  *  L  L  G  Q  P  K  L  G  P  C  T  E  H  L  S  H  L  G  L  P  S  C  L  D  G  S  R  *  R  L  P  Y  C  W  W  T  S  W  *  G  C  R  P  T  L  P  R  W  Q  L  R  P  I  R  P  C  *  R :   P  R  *  Q  Q  R  L  G  F  R  H  K  L  C  P  R  K  M  N  I  I  I  Y  F  L  N  F  D  C  L  M  A  L  *  S  S  C  D  L  I  E  W  I  F  F  S  K  F  L  *  L  C  S  S  E  L  H  F  P  K  L  *  I  K  Y  C  H  F  H  T  K  G  E  I  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23283" stop="22620"/>
                    <exon start="22481" stop="22426"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQLTFTYQTSNSLIFLSLKTMAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPVNNNAWAFATNFVPGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="22258" PGL_stop="23282"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22258" e_stop="23282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="22258" e_stop="23282" e_length="1025"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22258" stop="23020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22268" stop="22642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22336" stop="22930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22337" stop="22782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22338" stop="22564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22340" stop="23069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22368" stop="23055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22371" stop="22653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22428" stop="23134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22840" stop="23261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22953" stop="23220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23014" stop="23282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTCCCCTTTGGTATGAAAGTGGCAATATTTGATTCATAGCTTTGGAAAATGTAACTCAGAACTACACAATCATAGGAATTTTGAAAAAAAAATCCATTCTATTAAGTCACAACTACTTTACAGGGCCATCAAACAATCAAAATTCAAAAAATATATTATGATATTCATTTTCCGGGGACAAAGTTTGTGGCGAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACAAAGAATCCGAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCGGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCTAAGATGCTCTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCGTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGACTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATGGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGGAGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTTTAAAGAGAGGAAAATGAGGGAGTTGCTAGTTTGATATGTAAAAGTTAGTTGTG</gDNA_template>
            <first_frame> *  F  P  L  W  Y  E  S  G  N  I  *  F  I  A  L  E  N  V  T  Q  N  Y  T  I  I  G  I  L  K  K  K  S  I  L  L  S  H  N  Y  F  T  G  P  S  N  N  Q  N  S  K  N  I  L  *  Y  S  F  S  G  D  K  V  C  G  E  S  P  S  V  V  V  N  G  V  C  K  V  V  S  K  V  L  Q  W  T  L  S  G  N  N  G  L  N  K  E  S  E  H  R  E  H  S  K  S  A  V  L  N  L  L  Y  L  E  L  S  K  C  L  G  V  F  S  K  A  *  W  V  E  A  A  T  G  V  E  W  V  D  N  L  T  K  R  S  T  S  N  T  V  T  F  N  G  S  H  Q  D  N  L  A  S  P  D  G  *  D  A  L  C  M  D  Q  A  W  V  A  Q  V  V  K  S  S  L  A  E  D  L  G  S  G  L  E  P  H  S  L  T  E  L  D  T  V  T  G  Q  *  L  R  E  D  T  S  K  S  T  K  H  S  P  S  A  V  D  H  L  E  F  T  V  L  G  K  G  F  R  V  C  *  E  S  S  G  I  P  A  V  V  T  R  E  F  T  S  Q  V  A  W  G  L  T  R  E  W  A  Q  V  L  N  T  V  R  A  I  P  W  T  A  R  W  G  R  L  G  N  S  L  S  H  G  D  P  S  I  S  R  D  F  *  G  R  G  *  E  F  H  C  L  S  G  K  R  R  R  R  K  S  H  C  S  S  C  H  G  F  *  R  E  E  N  E  G  V  A  S  L  I  C  K  S  *  L   </first_frame>
            <second_frame>  N  F  P  F  G  M  K  V  A  I  F  D  S  *  L  W  K  M  *  L  R  T  T  Q  S  *  E  F  *  K  K  N  P  F  Y  *  V  T  T  T  L  Q  G  H  Q  T  I  K  I  Q  K  I  Y  Y  D  I  H  F  P  G  T  K  F  V  A  K  A  Q  A  L  L  L  T  G  S  A  R  W  S  A  R  F  S  N  G  P  F  P  V  T  M  A  *  T  K  N  P  N  I  E  N  I  A  S  L  P  F  L  I  S  F  T  L  S  S  A  N  A  S  G  S  S  A  R  P  N  G  S  K  L  P  P  G  *  S  G  S  T  T  S  P  R  G  P  P  A  I  R  *  P  S  T  A  P  I  K  T  T  W  Q  A  Q  M  A  K  M  L  C  A  W  T  K  L  G  L  P  K  *  S  S  P  P  S  L  K  I  W  D  P  A  L  N  H  T  A  S  P  N  L  T  P  L  R  A  N  S  S  G  K  T  H  P  R  A  P  S  I  A  H  L  Q  W  I  T  S  S  S  R  F  L  A  K  V  S  G  S  A  E  S  P  A  V  S  Q  P  *  S  P  G  N  S  P  V  K  *  L  G  D  S  P  E  N  G  P  K  Y  L  T  R  S  G  P  Y  H  G  L  L  D  G  A  D  L  A  T  A  F  L  M  V  I  L  P  F  P  E  I  S  E  A  E  G  E  S  F  T  A  C  P  A  K  E  G  E  E  R  A  I  V  A  A  A  M  V  F  K  E  R  K  M  R  E  L  L  V  *  Y  V  K  V  S  C  </second_frame>
            <third_frame>   I  S  P  L  V  *  K  W  Q  Y  L  I  H  S  F  G  K  C  N  S  E  L  H  N  H  R  N  F  E  K  K  I  H  S  I  K  S  Q  L  L  Y  R  A  I  K  Q  S  K  F  K  K  Y  I  M  I  F  I  F  R  G  Q  S  L  W  R  K  P  K  R  C  C  *  R  G  L  Q  G  G  Q  Q  G  S  P  M  D  P  F  R  *  Q  W  P  E  Q  R  I  R  T  *  R  T  *  Q  V  C  R  S  *  S  P  L  P  *  A  Q  Q  M  P  R  G  L  Q  Q  G  L  M  G  R  S  C  H  R  G  R  V  G  R  Q  P  H  Q  E  V  H  Q  Q  Y  G  N  L  Q  R  L  P  S  R  Q  L  G  K  P  R  W  L  R  C  S  V  H  G  P  S  L  G  C  P  S  S  Q  V  L  P  R  *  R  S  G  I  R  P  *  T  T  Q  P  H  R  T  *  H  R  Y  G  P  I  A  Q  G  R  H  I  Q  E  H  Q  A  *  P  I  C  S  G  S  P  R  V  H  G  S  W  Q  R  F  Q  G  L  L  R  V  Q  R  Y  P  S  R  S  H  Q  G  I  H  Q  S  S  S  L  G  T  H  Q  R  M  G  P  S  T  *  H  G  Q  G  H  T  M  D  C  *  M  G  Q  T  W  Q  Q  P  F  S  W  *  S  F  H  F  Q  R  F  L  R  Q  R  V  R  V  S  L  P  V  R  Q  K  K  E  K  K  E  P  L  *  Q  L  P  W  F  L  K  R  G  K  *  G  S  C  *  F  D  M  *  K  L  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23024" stop="23263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGDSPENGPKYLTRSGPYHGLLDGADLATAFLMVILPFPEISEAEGESFTACPAKEGEERAIVAAAMVFKERKMRELLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22423" stop="22635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSFSGDKVCGESPSVVVNGVCKVVSKVLQWTLSGNNGLNKESEHREHSKSAVLNLLYLELSKCLGVFSKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22599" stop="22811"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQQMPRGLQQGLMGRSCHRGRVGRQPHQEVHQQYGNLQRLPSRQLGKPRWLRCSVHGPSLGCPSSQVLPR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22793" stop="22996"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPPSLKIWDPALNHTASPNLTPLRANSSGKTHPRAPSIAHLQWITSSSRFLAKVSGSAESPAVSQP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22278" stop="22475"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWQYLIHSFGKCNSELHNHRNFEKKIHSIKSQLLYRAIKQSKFKKYIMIFIFRGQSLWRKPKRCC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="26738" PGL_stop="27525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26738" e_stop="27525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="26738" e_stop="27525" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26738" stop="27525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAGCATAACCGAGCACCTTAACCAGGTTCCTGTGTTTGAGTTGGCTCAGAGTCTTGACTTCCCTATCAAAGCATTTACGAATTTCTGCTGAGAACTGAAGATTCAGTTTCTTAACTGCTACAATTTTCCCACCTTCCAGTGTTCCTTTGTACACATTACTTGAACTGCTGGCTCCAATAATGTTTTGTGGACTGAAATTATCAGTAGCATGTTCCAAATCCTTTTGATAAAATCTCTGGAGGCTAAGTGCTGAGGTATAATTTGGAATTATATCCTCCGAGTCTTTCACTTTTTGCTTCTTCATGTACAGATGACACACAAATATTCCCACCACATGAAGAATGAGAACCAAAACAGGCCCAAGTATGATCCAGGTTTTCTTGGACAACCCATGAGAACTTGTTTGGTTTCTTTTGATGCTGCATGGACTGAGAAACTCCGTTCCACATAGCGATGGATTTCCCTGTAAATCTGCTGACCTTAAGTTGTCGAATACACCCCCCTTTGGAATGTGACCTTCAAGCTGGTTAAAAGAAAGGTTGAGATATATTAATGCAGGCATATTGGCAAATCTCTCAGGAATGATTCCCTTGAACTTGTTTTGTGAAAGATCAAGTGAGCGAAGATGTAGCAATCCTACCATTTCAGGAAGTTTGCCTTCTAATCTGTTCCTTGAGAGGTTCAAGAATACTAGCTCACTTAACTTGGTCAGAATTTCGCCTGGAGCAGGACCAGACAGCATGTTTCCTGACAGGTCCAGTGAGAATAAGTTTTTGCAGCGTCCT</gDNA_template>
            <first_frame> P  K  H  N  R  A  P  *  P  G  S  C  V  *  V  G  S  E  S  *  L  P  Y  Q  S  I  Y  E  F  L  L  R  T  E  D  S  V  S  *  L  L  Q  F  S  H  L  P  V  F  L  C  T  H  Y  L  N  C  W  L  Q  *  C  F  V  D  *  N  Y  Q  *  H  V  P  N  P  F  D  K  I  S  G  G  *  V  L  R  Y  N  L  E  L  Y  P  P  S  L  S  L  F  A  S  S  C  T  D  D  T  Q  I  F  P  P  H  E  E  *  E  P  K  Q  A  Q  V  *  S  R  F  S  W  T  T  H  E  N  L  F  G  F  F  *  C  C  M  D  *  E  T  P  F  H  I  A  M  D  F  P  V  N  L  L  T  L  S  C  R  I  H  P  P  L  E  C  D  L  Q  A  G  *  K  K  G  *  D  I  L  M  Q  A  Y  W  Q  I  S  Q  E  *  F  P  *  T  C  F  V  K  D  Q  V  S  E  D  V  A  I  L  P  F  Q  E  V  C  L  L  I  C  S  L  R  G  S  R  I  L  A  H  L  T  W  S  E  F  R  L  E  Q  D  Q  T  A  C  F  L  T  G  P  V  R  I  S  F  C  S  V   </first_frame>
            <second_frame>  P  S  I  T  E  H  L  N  Q  V  P  V  F  E  L  A  Q  S  L  D  F  P  I  K  A  F  T  N  F  C  *  E  L  K  I  Q  F  L  N  C  Y  N  F  P  T  F  Q  C  S  F  V  H  I  T  *  T  A  G  S  N  N  V  L  W  T  E  I  I  S  S  M  F  Q  I  L  L  I  K  S  L  E  A  K  C  *  G  I  I  W  N  Y  I  L  R  V  F  H  F  L  L  L  H  V  Q  M  T  H  K  Y  S  H  H  M  K  N  E  N  Q  N  R  P  K  Y  D  P  G  F  L  G  Q  P  M  R  T  C  L  V  S  F  D  A  A  W  T  E  K  L  R  S  T  *  R  W  I  S  L  *  I  C  *  P  *  V  V  E  Y  T  P  L  W  N  V  T  F  K  L  V  K  R  K  V  E  I  Y  *  C  R  H  I  G  K  S  L  R  N  D  S  L  E  L  V  L  *  K  I  K  *  A  K  M  *  Q  S  Y  H  F  R  K  F  A  F  *  S  V  P  *  E  V  Q  E  Y  *  L  T  *  L  G  Q  N  F  A  W  S  R  T  R  Q  H  V  S  *  Q  V  Q  *  E  *  V  F  A  A  S  </second_frame>
            <third_frame>   Q  A  *  P  S  T  L  T  R  F  L  C  L  S  W  L  R  V  L  T  S  L  S  K  H  L  R  I  S  A  E  N  *  R  F  S  F  L  T  A  T  I  F  P  P  S  S  V  P  L  Y  T  L  L  E  L  L  A  P  I  M  F  C  G  L  K  L  S  V  A  C  S  K  S  F  *  *  N  L  W  R  L  S  A  E  V  *  F  G  I  I  S  S  E  S  F  T  F  C  F  F  M  Y  R  *  H  T  N  I  P  T  T  *  R  M  R  T  K  T  G  P  S  M  I  Q  V  F  L  D  N  P  *  E  L  V  W  F  L  L  M  L  H  G  L  R  N  S  V  P  H  S  D  G  F  P  C  K  S  A  D  L  K  L  S  N  T  P  P  F  G  M  *  P  S  S  W  L  K  E  R  L  R  Y  I  N  A  G  I  L  A  N  L  S  G  M  I  P  L  N  L  F  C  E  R  S  S  E  R  R  C  S  N  P  T  I  S  G  S  L  P  S  N  L  F  L  E  R  F  K  N  T  S  S  L  N  L  V  R  I  S  P  G  A  G  P  D  S  M  F  P  D  R  S  S  E  N  K  F  L  Q  R  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27256" stop="27525"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSSWLKERLRYINAGILANLSGMIPLNLFCERSSERRCSNPTISGSLPSNLFLERFKNTSSLNLVRISPGAGPDSMFPDRSSENKFLQRP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26994" stop="27191"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIIWNYILRVFHFLLLHVQMTHKYSHHMKNENQNRPKYDPGFLGQPMRTCLVSFDAAWTEKLRST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="33835" PGL_stop="33393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33835" e_stop="33393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="33835" e_stop="33393" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33835" stop="33418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33750" stop="33393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33750" stop="33393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTACAAAAAGAAGGCCAACAAGTCTTACAGGAGCAGATGAATTACCAATTACTTTGCATCAAATTGTTCAGAATGCCCTTGCGAATGGCATAAACAAGCTAGTTCAGATTGTGGATCCTAATCTAGCTTCATATGTCTCCAAGAAACAGGATGTAGTAGAGGGACTTCTTAACTTGGCTTTGTCCTGCACCTCTCCTGATCCTGAAGATAGACCTGACATGGAACAAGTTCTGTCTTCTCTTTCAAAGCTAAGTAAGATGGACTGTATGCCTTCTCATTTGGTAAAAGATTAAATTTGATGTAGAAGAAGCTGGAATATCATCACTCTTAATGTGAACCACCACCAAGTTTCCCATGGTGGCTAATGGAACTAGTTCATAACTTAAAATGCATTTACTATTTAAATAATTTTTCCGTATTTCAAGCCATAAATGATGATC</gDNA_template>
            <first_frame> S  L  Q  K  E  G  Q  Q  V  L  Q  E  Q  M  N  Y  Q  L  L  C  I  K  L  F  R  M  P  L  R  M  A  *  T  S  *  F  R  L  W  I  L  I  *  L  H  M  S  P  R  N  R  M  *  *  R  D  F  L  T  W  L  C  P  A  P  L  L  I  L  K  I  D  L  T  W  N  K  F  C  L  L  F  Q  S  *  V  R  W  T  V  C  L  L  I  W  *  K  I  K  F  D  V  E  E  A  G  I  S  S  L  L  M  *  T  T  T  K  F  P  M  V  A  N  G  T  S  S  *  L  K  M  H  L  L  F  K  *  F  F  R  I  S  S  H  K  *  *   </first_frame>
            <second_frame>  H  Y  K  K  K  A  N  K  S  Y  R  S  R  *  I  T  N  Y  F  A  S  N  C  S  E  C  P  C  E  W  H  K  Q  A  S  S  D  C  G  S  *  S  S  F  I  C  L  Q  E  T  G  C  S  R  G  T  S  *  L  G  F  V  L  H  L  S  *  S  *  R  *  T  *  H  G  T  S  S  V  F  S  F  K  A  K  *  D  G  L  Y  A  F  S  F  G  K  R  L  N  L  M  *  K  K  L  E  Y  H  H  S  *  C  E  P  P  P  S  F  P  W  W  L  M  E  L  V  H  N  L  K  C  I  Y  Y  L  N  N  F  S  V  F  Q  A  I  N  D  D  </second_frame>
            <third_frame>   I  T  K  R  R  P  T  S  L  T  G  A  D  E  L  P  I  T  L  H  Q  I  V  Q  N  A  L  A  N  G  I  N  K  L  V  Q  I  V  D  P  N  L  A  S  Y  V  S  K  K  Q  D  V  V  E  G  L  L  N  L  A  L  S  C  T  S  P  D  P  E  D  R  P  D  M  E  Q  V  L  S  S  L  S  K  L  S  K  M  D  C  M  P  S  H  L  V  K  D  *  I  *  C  R  R  S  W  N  I  I  T  L  N  V  N  H  H  Q  V  S  H  G  G  *  W  N  *  F  I  T  *  N  A  F  T  I  *  I  I  F  P  Y  F  K  P  *  M  M  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33833" stop="33540"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITKRRPTSLTGADELPITLHQIVQNALANGINKLVQIVDPNLASYVSKKQDVVEGLLNLALSCTSPDPEDRPDMEQVLSSLSKLSKMDCMPSHLVKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="33411" PGL_stop="33750"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33411" e_stop="33750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="33411" e_stop="33750" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33411" stop="33750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATACGGAAAAATTATTTAAATAGTAAATGCATTTTAAGTTATGAACTAGTTCCATTAGCCACCATGGGAAACTTGGTGGTGGTTCACATTAAGAGTGATGATATTCCAGCTTCTTCTACATCAAATTTAATCTTTTACCAAATGAGAAGGCATACAGTCCATCTTACTTAGCTTTGAAAGAGAAGACAGAACTTGTTCCATGTCAGGTCTATCTTCAGGATCAGGAGAGGTGCAGGACAAAGCCAAGTTAAGAAGTCCCTCTACTACATCCTGTTTCTTGGAGACATATGAAGCTAGATTAGGATCCACAATCTGAACTAGCTTGTTTATGCCATTC</gDNA_template>
            <first_frame> E  I  R  K  N  Y  L  N  S  K  C  I  L  S  Y  E  L  V  P  L  A  T  M  G  N  L  V  V  V  H  I  K  S  D  D  I  P  A  S  S  T  S  N  L  I  F  Y  Q  M  R  R  H  T  V  H  L  T  *  L  *  K  R  R  Q  N  L  F  H  V  R  S  I  F  R  I  R  R  G  A  G  Q  S  Q  V  K  K  S  L  Y  Y  I  L  F  L  G  D  I  *  S  *  I  R  I  H  N  L  N  *  L  V  Y  A  I  </first_frame>
            <second_frame>  K  Y  G  K  I  I  *  I  V  N  A  F  *  V  M  N  *  F  H  *  P  P  W  E  T  W  W  W  F  T  L  R  V  M  I  F  Q  L  L  L  H  Q  I  *  S  F  T  K  *  E  G  I  Q  S  I  L  L  S  F  E  R  E  D  R  T  C  S  M  S  G  L  S  S  G  S  G  E  V  Q  D  K  A  K  L  R  S  P  S  T  T  S  C  F  L  E  T  Y  E  A  R  L  G  S  T  I  *  T  S  L  F  M  P  F </second_frame>
            <third_frame>   N  T  E  K  L  F  K  *  *  M  H  F  K  L  *  T  S  S  I  S  H  H  G  K  L  G  G  G  S  H  *  E  *  *  Y  S  S  F  F  Y  I  K  F  N  L  L  P  N  E  K  A  Y  S  P  S  Y  L  A  L  K  E  K  T  E  L  V  P  C  Q  V  Y  L  Q  D  Q  E  R  C  R  T  K  P  S  *  E  V  P  L  L  H  P  V  S  W  R  H  M  K  L  D  *  D  P  Q  S  E  L  A  C  L  C  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0091J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="35170" PGL_stop="34539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35170" e_stop="34539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="35170" e_stop="34539" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35170" stop="34882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35169" stop="34539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTACTGGGAAATCCATCTCTATGTGGAAAAAAGTTTCTCAGTCCATGCCACATAAAAAGAAACCGAACAAGTTCTCATGGTTTTTCCAAGAAAACCTGGATCATACTTGCAGCACTTGGATCTGTTTTCAGTCTCATTCTTCTTGTCCTGGGAATATTTTTATTTCATCGGTACATGAAGAAGAAAAAAGTGAATGACACGGAGTTTACAAATCCAAAGTGTACCGCAGCACTGAGCCTCCAGAGATTTTATCAAAAGGATTTGGAACATGCTACCAATAATTTCCGTCCGGAAAACATTATTGGAGCCAGCAGTTTAAGTACTGTGTACAAAGGAACACTGGAAGATGGGAAGATTGTAGCAGTTAAGAAGCTGAATCACCAGTTCTCAGCAGAATCTGGTAAATGTTTTGATAGGGAAGTCAAGACTCTGAGCCAACTCAGACACAGGAACCTAGTTAAGGTGCTAGGTTACGCTTGGGAAAGCAAGAAGCTAAGGGCTTTAGTTTTAGAATACATGGAGAATGGGAACTTGGACAACATGATTTATGGTCAAGTAGAGGATGACTGGACGTTGTCCAACAGGATTGATATTTTAGTTTCAGTTGCAAGTGGACTATCATACCTGCAT</gDNA_template>
            <first_frame> I  Y  W  E  I  H  L  Y  V  E  K  S  F  S  V  H  A  T  *  K  E  T  E  Q  V  L  M  V  F  P  R  K  P  G  S  Y  L  Q  H  L  D  L  F  S  V  S  F  F  L  S  W  E  Y  F  Y  F  I  G  T  *  R  R  K  K  *  M  T  R  S  L  Q  I  Q  S  V  P  Q  H  *  A  S  R  D  F  I  K  R  I  W  N  M  L  P  I  I  S  V  R  K  T  L  L  E  P  A  V  *  V  L  C  T  K  E  H  W  K  M  G  R  L  *  Q  L  R  S  *  I  T  S  S  Q  Q  N  L  V  N  V  L  I  G  K  S  R  L  *  A  N  S  D  T  G  T  *  L  R  C  *  V  T  L  G  K  A  R  S  *  G  L  *  F  *  N  T  W  R  M  G  T  W  T  T  *  F  M  V  K  *  R  M  T  G  R  C  P  T  G  L  I  F  *  F  Q  L  Q  V  D  Y  H  T  C   </first_frame>
            <second_frame>  F  T  G  K  S  I  S  M  W  K  K  V  S  Q  S  M  P  H  K  K  K  P  N  K  F  S  W  F  F  Q  E  N  L  D  H  T  C  S  T  W  I  C  F  Q  S  H  S  S  C  P  G  N  I  F  I  S  S  V  H  E  E  E  K  S  E  *  H  G  V  Y  K  S  K  V  Y  R  S  T  E  P  P  E  I  L  S  K  G  F  G  T  C  Y  Q  *  F  P  S  G  K  H  Y  W  S  Q  Q  F  K  Y  C  V  Q  R  N  T  G  R  W  E  D  C  S  S  *  E  A  E  S  P  V  L  S  R  I  W  *  M  F  *  *  G  S  Q  D  S  E  P  T  Q  T  Q  E  P  S  *  G  A  R  L  R  L  G  K  Q  E  A  K  G  F  S  F  R  I  H  G  E  W  E  L  G  Q  H  D  L  W  S  S  R  G  *  L  D  V  V  Q  Q  D  *  Y  F  S  F  S  C  K  W  T  I  I  P  A  </second_frame>
            <third_frame>   L  L  G  N  P  S  L  C  G  K  K  F  L  S  P  C  H  I  K  R  N  R  T  S  S  H  G  F  S  K  K  T  W  I  I  L  A  A  L  G  S  V  F  S  L  I  L  L  V  L  G  I  F  L  F  H  R  Y  M  K  K  K  K  V  N  D  T  E  F  T  N  P  K  C  T  A  A  L  S  L  Q  R  F  Y  Q  K  D  L  E  H  A  T  N  N  F  R  P  E  N  I  I  G  A  S  S  L  S  T  V  Y  K  G  T  L  E  D  G  K  I  V  A  V  K  K  L  N  H  Q  F  S  A  E  S  G  K  C  F  D  R  E  V  K  T  L  S  Q  L  R  H  R  N  L  V  K  V  L  G  Y  A  W  E  S  K  K  L  R  A  L  V  L  E  Y  M  E  N  G  N  L  D  N  M  I  Y  G  Q  V  E  D  D  W  T  L  S  N  R  I  D  I  L  V  S  V  A  S  G  L  S  Y  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35168" stop="34539"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLGNPSLCGKKFLSPCHIKRNRTSSHGFSKKTWIILAALGSVFSLILLVLGIFLFHRYMKKKKVNDTEFTNPKCTAALSLQRFYQKDLEHATNNFRPENIIGASSLSTVYKGTLEDGKIVAVKKLNHQFSAESGKCFDREVKTLSQLRHRNLVKVLGYAWESKKLRALVLEYMENGNLDNMIYGQVEDDWTLSNRIDILVSVASGLSYLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="44406" PGL_stop="44991"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44406" e_stop="44991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="44406" e_stop="44991" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44406" stop="44991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGCTTGCATAAAGTGTAATCATCAACCCATTATCCATTAAAACAAATCATCAAAGTCATACAACAACAATAACAAATAGCAGCTCCAATAGGTGAAAGAGTGTCACATATTGGAGAAATTATTCAAATGCCTTAATAGAGTTTGCAACTAGTGGAAACATACTATATGCTAGAATGAGAAATTAGATATAGCAGCTAGCTACTACAGCAGACTTATTGTCCTATCGCTGGACAAAGGACCATATTCTACGTTACGTTACCCCCTCCAGAGCAGCAACTCAGCAATACGACGGTATAAGTAGTTCTTCTTCACATAAGCAAAAGATATGACTAGGGTTCATAATCATGTGACGGTGATAAAGGAAGCGAAATTACCTATACCACAAAGGATATCAGGCATATGTCTTCAGATTATCGACTCCAAGCTTCTGCACTTCCACCTTAAGTGACTTGAGGTATCTGACAGCTTCATCAAGAACGGTGACAGTATTCATCCTGCTGGCACCAGGGACGATTCCCTTTAATGCCTTGACCATCTTCTTAAGTTTCCTGCGTTTTCTCTCACTGCAATTGCTAGTACTGCTAC</gDNA_template>
            <first_frame> T  L  A  *  S  V  I  I  N  P  L  S  I  K  T  N  H  Q  S  H  T  T  T  I  T  N  S  S  S  N  R  *  K  S  V  T  Y  W  R  N  Y  S  N  A  L  I  E  F  A  T  S  G  N  I  L  Y  A  R  M  R  N  *  I  *  Q  L  A  T  T  A  D  L  L  S  Y  R  W  T  K  D  H  I  L  R  Y  V  T  P  S  R  A  A  T  Q  Q  Y  D  G  I  S  S  S  S  S  H  K  Q  K  I  *  L  G  F  I  I  M  *  R  *  *  R  K  R  N  Y  L  Y  H  K  G  Y  Q  A  Y  V  F  R  L  S  T  P  S  F  C  T  S  T  L  S  D  L  R  Y  L  T  A  S  S  R  T  V  T  V  F  I  L  L  A  P  G  T  I  P  F  N  A  L  T  I  F  L  S  F  L  R  F  L  S  L  Q  L  L  V  L  L  </first_frame>
            <second_frame>  R  L  H  K  V  *  S  S  T  H  Y  P  L  K  Q  I  I  K  V  I  Q  Q  Q  *  Q  I  A  A  P  I  G  E  R  V  S  H  I  G  E  I  I  Q  M  P  *  *  S  L  Q  L  V  E  T  Y  Y  M  L  E  *  E  I  R  Y  S  S  *  L  L  Q  Q  T  Y  C  P  I  A  G  Q  R  T  I  F  Y  V  T  L  P  P  P  E  Q  Q  L  S  N  T  T  V  *  V  V  L  L  H  I  S  K  R  Y  D  *  G  S  *  S  C  D  G  D  K  G  S  E  I  T  Y  T  T  K  D  I  R  H  M  S  S  D  Y  R  L  Q  A  S  A  L  P  P  *  V  T  *  G  I  *  Q  L  H  Q  E  R  *  Q  Y  S  S  C  W  H  Q  G  R  F  P  L  M  P  *  P  S  S  *  V  S  C  V  F  S  H  C  N  C  *  Y  C  Y </second_frame>
            <third_frame>   A  C  I  K  C  N  H  Q  P  I  I  H  *  N  K  S  S  K  S  Y  N  N  N  N  K  *  Q  L  Q  *  V  K  E  C  H  I  L  E  K  L  F  K  C  L  N  R  V  C  N  *  W  K  H  T  I  C  *  N  E  K  L  D  I  A  A  S  Y  Y  S  R  L  I  V  L  S  L  D  K  G  P  Y  S  T  L  R  Y  P  L  Q  S  S  N  S  A  I  R  R  Y  K  *  F  F  F  T  *  A  K  D  M  T  R  V  H  N  H  V  T  V  I  K  E  A  K  L  P  I  P  Q  R  I  S  G  I  C  L  Q  I  I  D  S  K  L  L  H  F  H  L  K  *  L  E  V  S  D  S  F  I  K  N  G  D  S  I  H  P  A  G  T  R  D  D  S  L  *  C  L  D  H  L  L  K  F  P  A  F  S  L  T  A  I  A  S  T  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44766" stop="44990"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKRNYLYHKGYQAYVFRLSTPSFCTSTLSDLRYLTASSRTVTVFILLAPGTIPFNALTIFLSFLRFLSLQLLVLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="47910" PGL_stop="44410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47910" e_stop="47792"/>
            <exon e_start="47190" e_stop="47055"/>
            <exon e_start="46644" e_stop="46471"/>
            <exon e_start="45889" e_stop="44410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.588" acc_prob="0.989" e_score="0.950"/>
          <exon-intron don_prob="0.802" acc_prob="0.941" e_score="0.993"/>
          <exon-intron don_prob="0.964" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="47910" e_stop="47792" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.588" acc_prob="0.989">
            <gDNA_intron_boundary i_start="47791" i_stop="47191" i_length="601"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="47190" e_stop="47055" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.802" acc_prob="0.941">
            <gDNA_intron_boundary i_start="47054" i_stop="46645" i_length="410"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46644" e_stop="46471" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46470" i_stop="45890" i_length="581"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="45889" e_stop="44410" e_length="1480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47910" stop="47792"/>
              <exon start="47190" stop="47055"/>
              <exon start="46644" stop="46471"/>
              <exon start="45889" stop="45542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47885" stop="47792"/>
              <exon start="47190" stop="47055"/>
              <exon start="46644" stop="46471"/>
              <exon start="45889" stop="45858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47883" stop="47792"/>
              <exon start="47190" stop="47055"/>
              <exon start="46644" stop="46471"/>
              <exon start="45889" stop="45662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46568" stop="46471"/>
              <exon start="45889" stop="45571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46546" stop="46471"/>
              <exon start="45889" stop="45427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46503" stop="46471"/>
              <exon start="45889" stop="45315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46502" stop="46471"/>
              <exon start="45889" stop="45493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45779" stop="45243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45727" stop="45028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45710" stop="45100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45661" stop="45138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45622" stop="45315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45615" stop="45037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45129" stop="44416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45105" stop="44416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44972" stop="44519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44972" stop="44519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44692" stop="44410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCACGAGCTTCTGCTTCAACATTTGCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAATTCAGAAAATCTAGTGAAGAAACAACAAAGATCTTTTTTTTTTTTTTCATTTGG : TGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCATTTTACTTG : ATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACTAGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG : GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGAAGAGGAAGAATGTGAGGAATATGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCAAAAAGAGCAGGACCTCTTCTTTCAGGGAATCCTCTGGTAGCAGTACTAGCAATTGCAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACCGTCACATGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACACTTTATGCAA</gDNA_template>
            <first_frame> K  P  R  A  S  A  S  T  F  A  S  D  T  H  L  F  P  L  *  K  K  N  S  E  N  L  V  K  K  Q  Q  R  S  F  F  F  F  S  F  G :   G  L  D  *  R  L  *  Y  T  A  L  D  Q  S  T  C  R  G  H  F  L  L  *  V  I  V  *  S  V  C  A  L  W  Y  S  F  V  *  F  C  N  P  F  Y  L  :  I  A  E  S  L  Y  F  L  S  C  D  I  S  *  Y  *  S  I  W  R  L  R  M  Y  I  A  I  T  L  K  R  Y  R  A  V  K  E  A  G  E  I  K  M  H  V  G  S  V  A  Y  Y  Q  L  M  L  V  C  Q  :  A  E  Y  F  R  Q  L  L  K  P  V  T  *  S  A  K  V  *  A  L  G  R  L  G  L  L  T  S  C  C  S  Y  S  A  K  P  C  *  S  W  D  L  L  L  L  F  Q  C  I  R  N  Q  N  D  L  I  K  H  *  M  W  L  L  L  I  G  I  V  S  A  F  Y  Y  N  *  Y  T  L  N  I  T  L  F  C  L  C  L  S  *  L  L  A  T  L  I  F  K  T  S  Q  V  E  N  T  F  L  V  Q  F  I  G  S  L  T  *  L  L  M  Q  N  N  Y  Q  F  S  P  Q  I  Q  K  P  F  V  S  L  E  D  Q  A  A  G  G  N  I  F  D  I  P  V  P  S  V  F  D  T  M  A  L  P  T  S  F  K  S  S  V  P  F  H  G  F  E  F  R  S  S  E  A  C  P  K  N  F  I  I  F  D  Q  T  D  Y  R  S  Q  I  M  Y  H  P  A  M  T  S  K  F  P  Y  P  D  L  N  Y  N  S  T  C  F  H  D  C  M  E  R  K  I  A  N  N  E  N  T  E  V  S  S  Y  L  K  E  D  S  D  D  I  N  A  L  L  S  L  E  E  E  E  C  E  E  Y  D  E  E  E  V  S  T  A  R  T  D  A  N  Y  G  C  S  S  P  E  S  Y  S  N  Y  H  C  Q  S  K  K  S  R  T  S  S  F  R  E  S  S  G  S  S  T  S  N  C  S  E  R  K  R  R  K  L  K  K  M  V  K  A  L  K  G  I  V  P  G  A  S  R  M  N  T  V  T  V  L  D  E  A  V  R  Y  L  K  S  L  K  V  E  V  Q  K  L  G  V  D  N  L  K  T  Y  A  *  Y  P  L  W  Y  R  *  F  R  F  L  Y  H  R  H  M  I  M  N  P  S  H  I  F  C  L  C  E  E  E  L  L  I  P  S  Y  C  *  V  A  A  L  E  G  V  T  *  R  R  I  W  S  F  V  Q  R  *  D  N  K  S  A  V  V  A  S  C  Y  I  *  F  L  I  L  A  Y  S  M  F  P  L  V  A  N  S  I  K  A  F  E  *  F  L  Q  Y  V  T  L  F  H  L  L  E  L  L  F  V  I  V  V  V  *  L  *  *  F  V  L  M  D  N  G  L  M  I  T  L  Y  A  </first_frame>
            <second_frame>  N  H  E  L  L  L  Q  H  L  H  L  T  L  T  S  S  L  S  R  K  K  I  Q  K  I  *  *  R  N  N  K  D  L  F  F  F  F  H  L   : V  A  W  I  E  D  Y  N  I  L  H  W  T  N  Q  H  A  V  G  I  F  F  S  E  L  L  C  E  V  C  A  L  C  G  I  L  S  C  D  S  V  T  H  F  T  * :   L  R  N  H  F  I  F  C  L  V  I  F  L  D  T  S  L  F  G  G  *  E  C  T  L  R  L  P  *  R  D  T  E  Q  L  K  K  L  V  R  L  K  C  M  W  G  V  L  L  I  T  N  *  C  *  F  V  R :   L  S  T  S  V  S  C  L  N  L  *  R  S  L  L  K  C  K  L  W  G  G  W  D  C  L  L  L  V  A  L  I  Q  Q  S  L  V  E  V  G  I  C  C  F  S  F  S  V  Y  E  I  R  M  T  S  L  S  T  E  C  G  Y  C  *  L  E  L  S  V  L  F  T  T  T  N  T  P  *  T  L  L  S  F  A  C  A  F  R  N  S  *  L  L  *  F  L  K  H  P  K  W  K  T  L  F  *  S  S  L  L  D  L  *  L  S  Y  S  C  R  I  T  I  N  F  P  L  K  F  K  S  L  L  S  L  W  K  T  K  Q  L  V  V  I  Y  L  I  F  L  F  H  P  S  L  I  Q  W  H  F  L  L  V  S  N  L  L  C  P  F  M  V  L  N  F  G  P  L  R  H  V  Q  R  I  S  S  S  L  I  R  L  I  T  G  A  R  S  C  T  T  L  P  *  P  P  N  S  H  I  L  I  *  I  I  I  Q  L  A  S  T  T  A  W  R  E  K  L  Q  T  M  R  I  Q  K  F  L  H  I  *  R  K  I  Q  M  I  *  M  H  C  S  A  W  K  R  K  N  V  R  N  M  M  K  K  R  *  A  L  H  A  L  M  Q  T  M  D  A  V  P  L  N  H  T  Q  T  I  I  V  N  P  K  R  A  G  P  L  L  S  G  N  P  L  V  A  V  L  A  I  A  V  R  E  N  A  G  N  L  R  R  W  S  R  H  *  R  E  S  S  L  V  P  A  G  *  I  L  S  P  F  L  M  K  L  S  D  T  S  S  H  L  R  W  K  C  R  S  L  E  S  I  I  *  R  H  M  P  D  I  L  C  G  I  G  N  F  A  S  F  I  T  V  T  *  L  *  T  L  V  I  S  F  A  Y  V  K  K  N  Y  L  Y  R  R  I  A  E  L  L  L  W  R  G  *  R  N  V  E  Y  G  P  L  S  S  D  R  T  I  S  L  L  *  *  L  A  A  I  S  N  F  S  F  *  H  I  V  C  F  H  *  L  Q  T  L  L  R  H  L  N  N  F  S  N  M  *  H  S  F  T  Y  W  S  C  Y  L  L  L  L  L  Y  D  F  D  D  L  F  *  W  I  M  G  *  *  L  H  F  M  Q </second_frame>
            <third_frame>   T  T  S  F  C  F  N  I  C  I  *  H  S  P  L  P  S  L  E  K  K  F  R  K  S  S  E  E  T  T  K  I  F  F  F  F  F  I  W  :  W  L  G  L  K  T  I  I  Y  C  T  G  P  I  N  M  P  W  A  F  S  S  L  S  Y  C  V  K  C  V  R  F  V  V  F  F  R  V  I  L  *  P  I  L  L   : D  C  G  I  T  L  F  S  V  L  *  Y  F  L  I  L  V  Y  L  E  V  E  N  V  H  C  D  Y  L  E  E  I  Q  S  S  *  R  S  W  *  D  *  N  A  C  G  E  C  C  L  L  P  I  D  A  S  L  S   : G  *  V  L  P  S  V  A  *  T  C  N  V  V  C  *  S  V  S  F  G  E  V  G  I  A  Y  F  L  L  L  L  F  S  K  A  L  L  K  L  G  F  V  A  S  L  S  V  Y  T  K  S  E  *  P  H  *  A  L  N  V  V  T  V  D  W  N  C  Q  C  F  L  L  Q  L  I  H  L  E  H  Y  S  L  L  P  V  P  F  V  T  L  S  Y  F  N  F  *  N  I  P  S  G  K  H  F  S  S  P  V  Y  W  I  F  D  L  V  T  H  A  E  *  L  S  I  F  P  S  N  S  K  A  F  C  L  S  G  R  P  S  S  W  W  *  Y  I  *  Y  S  C  S  I  R  L  *  Y  N  G  T  S  Y  *  F  Q  I  F  C  A  L  S  W  F  *  I  S  V  L  *  G  M  S  K  E  F  H  H  L  *  S  D  *  L  P  E  P  D  H  V  P  P  C  H  D  L  Q  I  P  I  S  *  S  E  L  *  F  N  L  L  P  R  L  H  G  E  K  N  C  K  Q  *  E  Y  R  S  F  F  I  S  E  G  R  F  R  *  Y  K  C  I  A  Q  L  G  R  G  R  M  *  G  I  *  *  R  R  G  E  H  C  T  H  *  C  K  L  W  M  Q  F  P  *  I  I  L  K  L  S  L  S  I  Q  K  E  Q  D  L  F  F  Q  G  I  L  W  *  Q  Y  *  Q  L  Q  *  E  K  T  Q  E  T  *  E  D  G  Q  G  I  K  G  N  R  P  W  C  Q  Q  D  E  Y  C  H  R  S  *  *  S  C  Q  I  P  Q  V  T  *  G  G  S  A  E  A  W  S  R  *  S  E  D  I  C  L  I  S  F  V  V  *  V  I  S  L  P  L  S  P  S  H  D  Y  E  P  *  S  Y  L  L  L  M  *  R  R  T  T  Y  T  V  V  L  L  S  C  C  S  G  G  G  N  V  T  *  N  M  V  L  C  P  A  I  G  Q  *  V  C  C  S  S  *  L  L  Y  L  I  S  H  S  S  I  *  Y  V  S  T  S  C  K  L  Y  *  G  I  *  I  I  S  P  I  C  D  T  L  S  P  I  G  A  A  I  C  Y  C  C  C  M  T  L  M  I  C  F  N  G  *  W  V  D  D  Y  T  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45544" stop="44798"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLMQNNYQFSPQIQKPFVSLEDQAAGGNIFDIPVPSVFDTMALPTSFKSSVPFHGFEFRSSEACPKNFIIFDQTDYRSQIMYHPAMTSKFPYPDLNYNSTCFHDCMERKIANNENTEVSSYLKEDSDDINALLSLEEEECEEYDEEEVSTARTDANYGCSSPESYSNYHCQSKKSRTSSFRESSGSSTSNCSERKRRKLKKMVKALKGIVPGASRMNTVTVLDEAVRYLKSLKVEVQKLGVDNLKTYA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47875" stop="47792"/>
                    <exon start="47190" stop="47068"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSPLPSLEKKFRKSSEETTKIFFFFFIWWLGLKTIIYCTGPINMPWAFSSLSYCVKCVRFVVFFRVIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="51293" PGL_stop="50846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51293" e_stop="50846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="51293" e_stop="50846" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51293" stop="50972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51293" stop="50988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51292" stop="50846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAAAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGAGTAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTAGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTGG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  G  K  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  *  V  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  E  K  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  F  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  E  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  F  V  Y  K  A  R  E  A  S  E  N  G  E  *  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  W </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  R  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  S  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  S  E  R  D  F  W  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0091J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="54408" PGL_stop="57507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54408" e_stop="54783"/>
            <exon e_start="54898" e_stop="55122"/>
            <exon e_start="55297" e_stop="55407"/>
            <exon e_start="56131" e_stop="56192"/>
            <exon e_start="57000" e_stop="57507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.819" acc_prob="0.995" e_score="0.981"/>
          <exon-intron don_prob="0.845" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.798" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="54408" e_stop="54783" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.819" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54898" e_stop="55122" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.845" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55123" i_stop="55296" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55297" e_stop="55407" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.976">
            <gDNA_intron_boundary i_start="55408" i_stop="56130" i_length="723"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56131" e_stop="56192" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.798">
            <gDNA_intron_boundary i_start="56193" i_stop="56999" i_length="807"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="57000" e_stop="57507" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54408" stop="54783"/>
              <exon start="54898" stop="54986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54436" stop="54692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54437" stop="54766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54444" stop="54783"/>
              <exon start="54898" stop="55058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54454" stop="54783"/>
              <exon start="54898" stop="54981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54471" stop="54783"/>
              <exon start="54898" stop="55092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54497" stop="54783"/>
              <exon start="54898" stop="55122"/>
              <exon start="55297" stop="55407"/>
              <exon start="56131" stop="56192"/>
              <exon start="57000" stop="57208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54497" stop="54783"/>
              <exon start="54898" stop="54998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54499" stop="54783"/>
              <exon start="54898" stop="55122"/>
              <exon start="55297" stop="55322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54507" stop="54783"/>
              <exon start="54898" stop="55122"/>
              <exon start="55297" stop="55387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54772" stop="54783"/>
              <exon start="54898" stop="55122"/>
              <exon start="55297" stop="55407"/>
              <exon start="56131" stop="56192"/>
              <exon start="57000" stop="57057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56137" stop="56192"/>
              <exon start="57000" stop="57507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAACTTAAGGGACTATTGTAGAAAATATTTTTCTCAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC : ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTG : GTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTACAGGGCAGAGTCTTTTGGCTT : GTATGGCCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAG : ATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTGAAGATGGCAACTGGTGGGTTGCTTTACTACTTTGTTCGAGGTGGAAGACAGGACGCAAGAGCTGTTAAATATATTCGGTTAATGTATTTCTCTAGCTCCAAAGGGTGCACGGTTTTGCATAATTTGCTCTTGAAGTGCCACTGCTAATGCATTAGCTCGAAGGCTTCTTTTTCTATTTTACTTTGTCGTTGTTCTTCTTTCAAAAGAGTCGTTTGGACTAATGGGATTTGGCAGTCACTTCTCGTATAAACTTGAGCCTTTGTAGTCAGTGTTACCGCTGGGAAGTTACATGTACCTGGTCTCTAAGGTGCAGGCAAGCTTTGCCAAAACACAGCACTACATTTTAATTCTCATTTTTCTGATAGTTACATGTTCCTTTAAATAATACAGTAGTAAATTTTTTAATTTTAATTAACTGATGTATATATCCAAAAGCTAGGAGTTAAGCTA</gDNA_template>
            <first_frame> S  N  L  R  D  Y  C  R  K  Y  F  S  Q  L  S  L  H  R  R  M  H  N  *  T  T  K  F  R  A  V  F  A  V  R  Q  S  E  I  A  Q  L  N  S  G  G  R  V  R  R  R  V  E  V  W  V  T  V  V  L  F  R  L  I  L  S  S  I  L  I  G  E  I  A  S  L  G  L  R  C  R  L  T  N  N  G  S  E  K  S  E  A  I  D  A  F  Y  Q  R  S  I  S  A  N  I  T  R  S  Q  I  P  L  W  Y  S  C  G  Q  Q  L  Y  L  H  L  S  S   : H  S  R  S  K  H  A  S  N  V  *  S  D  W  R  S  C  F  G  *  K  A  I  N  S  V  *  E  N  A  T  W  R  C  S  A  S  A  *  P  *  E  P  E  K  N  C  D  Q  K  N  H  G  H  G  *  *  Y  C  *  I  C  C  G  S  C  K  *  W  N  R  T  Y  Y  C   : G  T  R  W  T  C  L  D  *  R  G  *  Q  I  Q  Y  Q  R  F  E  E  L  W  T  C  T  L  W  T  C  T  G  Q  S  L  L  A   : C  M  A  S  *  K  F  W  I  S  R  K  R  S  T  V  N  Q  P  F  K  :  I  W  S  M  L  V  E  Y  S  L  T  S  L  D  F  K  Q  F  T  E  D  G  N  W  W  V  A  L  L  L  C  S  R  W  K  T  G  R  K  S  C  *  I  Y  S  V  N  V  F  L  *  L  Q  R  V  H  G  F  A  *  F  A  L  E  V  P  L  L  M  H  *  L  E  G  F  F  F  Y  F  T  L  S  L  F  F  F  Q  K  S  R  L  D  *  W  D  L  A  V  T  S  R  I  N  L  S  L  C  S  Q  C  Y  R  W  E  V  T  C  T  W  S  L  R  C  R  Q  A  L  P  K  H  S  T  T  F  *  F  S  F  F  *  *  L  H  V  P  L  N  N  T  V  V  N  F  L  I  L  I  N  *  C  I  Y  P  K  A  R  S  *  A  </first_frame>
            <second_frame>  Q  T  *  G  T  I  V  E  N  I  F  L  N  F  L  Y  T  G  E  C  T  I  R  P  P  N  S  G  L  C  S  L  C  V  N  R  R  L  H  N  *  I  A  G  A  V  F  A  V  E  *  R  S  G  L  L  W  Y  S  F  A  *  F  C  H  P  F  *  L  V  R  *  P  L  *  G  *  D  A  D  *  L  I  M  G  L  K  N  L  K  Q  L  T  P  F  I  K  E  A  F  Q  Q  T  L  L  V  A  K  F  L  C  G  I  H  V  V  N  S  Y  I  C  T  L  A  L  :  T  Q  G  P  S  M  L  P  T  F  S  L  T  G  D  L  V  L  A  E  R  L  S  T  R  F  E  K  M  Q  R  G  D  V  V  L  V  R  S  P  E  N  P  R  K  I  V  I  K  R  I  M  G  M  G  S  D  T  V  R  Y  V  V  D  H  A  N  N  G  I  E  H  T  I  V  :  V  P  D  G  H  V  W  I  E  G  D  N  K  F  N  T  N  D  S  R  N  F  G  P  V  P  Y  G  L  V  Q  G  R  V  F  W  L  :  V  W  P  P  E  N  F  G  S  V  G  R  E  V  Q  *  I  N  L  S  R :   F  G  V  C  L  *  S  I  L  S  Q  A  W  I  L  N  N  L  L  K  M  A  T  G  G  L  L  Y  Y  F  V  R  G  G  R  Q  D  A  R  A  V  K  Y  I  R  L  M  Y  F  S  S  S  K  G  C  T  V  L  H  N  L  L  L  K  C  H  C  *  C  I  S  S  K  A  S  F  S  I  L  L  C  R  C  S  S  F  K  R  V  V  W  T  N  G  I  W  Q  S  L  L  V  *  T  *  A  F  V  V  S  V  T  A  G  K  L  H  V  P  G  L  *  G  A  G  K  L  C  Q  N  T  A  L  H  F  N  S  H  F  S  D  S  Y  M  F  L  *  I  I  Q  *  *  I  F  *  F  *  L  T  D  V  Y  I  Q  K  L  G  V  K  L </second_frame>
            <third_frame>   K  L  K  G  L  L  *  K  I  F  F  S  T  F  S  T  P  E  N  A  Q  L  D  H  Q  I  P  G  C  V  R  C  A  S  I  G  D  C  T  I  K  *  R  G  P  C  S  P  S  S  R  G  L  G  Y  C  G  T  L  S  P  D  S  V  I  H  F  N  W  *  D  S  L  F  R  V  E  M  Q  I  D  *  *  W  V  *  K  I  *  S  N  *  R  L  L  S  K  K  H  F  S  K  H  Y  S  *  P  N  S  S  V  V  F  M  W  S  T  A  I  S  A  P  *  L  S :   L  K  V  Q  A  C  F  Q  R  L  V  *  L  E  I  L  F  W  L  K  G  Y  Q  L  G  L  R  K  C  N  V  E  M  *  C  *  C  V  A  L  R  T  R  E  K  L  *  S  K  E  S  W  A  W  V  V  I  L  L  D  M  L  W  I  M  Q  I  M  E  *  N  I  L  L  W :   Y  Q  M  D  M  F  G  L  K  G  I  T  N  S  I  P  T  I  R  G  T  L  D  L  Y  L  M  D  L  Y  R  A  E  S  F  G  L :   Y  G  L  L  K  I  L  D  Q  *  E  E  K  Y  S  K  S  T  F  Q   : D  L  E  Y  A  C  R  V  F  S  H  K  P  G  F  *  T  I  Y  *  R  W  Q  L  V  G  C  F  T  T  L  F  E  V  E  D  R  T  Q  E  L  L  N  I  F  G  *  C  I  S  L  A  P  K  G  A  R  F  C  I  I  C  S  *  S  A  T  A  N  A  L  A  R  R  L  L  F  L  F  Y  F  V  V  V  L  L  S  K  E  S  F  G  L  M  G  F  G  S  H  F  S  Y  K  L  E  P  L  *  S  V  L  P  L  G  S  Y  M  Y  L  V  S  K  V  Q  A  S  F  A  K  T  Q  H  Y  I  L  I  L  I  F  L  I  V  T  C  S  F  K  *  Y  S  S  K  F  F  N  F  N  *  L  M  Y  I  S  K  S  *  E  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54652" stop="54783"/>
                    <exon start="54898" stop="55122"/>
                    <exon start="55297" stop="55407"/>
                    <exon start="56131" stop="56178"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMGLKNLKQLTPFIKEAFQQTLLVAKFLCGIHVVNSYICTLALTQGPSMLPTFSLTGDLVLAERLSTRFEKMQRGDVVLVRSPENPRKIVIKRIMGMGSDTVRYVVDHANNGIEHTIVVPDGHVWIEGDNKFNTNDSRNFGPVPYGLVQGRVFWLVWPPENFGSVGREVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54408" e_stop="54783"/>
            <exon e_start="54898" e_stop="55124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.819" acc_prob="0.995" e_score="0.981"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="54408" e_stop="54783" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.819" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54784" i_stop="54897" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="54898" e_stop="55124" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54408" stop="54783"/>
              <exon start="54898" stop="54986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54436" stop="54692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54437" stop="54766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54444" stop="54783"/>
              <exon start="54898" stop="55058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54454" stop="54783"/>
              <exon start="54898" stop="54981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54471" stop="54783"/>
              <exon start="54898" stop="55092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54497" stop="54783"/>
              <exon start="54898" stop="55124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54497" stop="54783"/>
              <exon start="54898" stop="54998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAACTTAAGGGACTATTGTAGAAAATATTTTTCTCAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC : ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGT</gDNA_template>
            <first_frame> S  N  L  R  D  Y  C  R  K  Y  F  S  Q  L  S  L  H  R  R  M  H  N  *  T  T  K  F  R  A  V  F  A  V  R  Q  S  E  I  A  Q  L  N  S  G  G  R  V  R  R  R  V  E  V  W  V  T  V  V  L  F  R  L  I  L  S  S  I  L  I  G  E  I  A  S  L  G  L  R  C  R  L  T  N  N  G  S  E  K  S  E  A  I  D  A  F  Y  Q  R  S  I  S  A  N  I  T  R  S  Q  I  P  L  W  Y  S  C  G  Q  Q  L  Y  L  H  L  S  S   : H  S  R  S  K  H  A  S  N  V  *  S  D  W  R  S  C  F  G  *  K  A  I  N  S  V  *  E  N  A  T  W  R  C  S  A  S  A  *  P  *  E  P  E  K  N  C  D  Q  K  N  H  G  H  G  *  *  Y  C  *  I  C  C  G  S  C  K  *  W  N  R  T  Y  Y  C  G </first_frame>
            <second_frame>  Q  T  *  G  T  I  V  E  N  I  F  L  N  F  L  Y  T  G  E  C  T  I  R  P  P  N  S  G  L  C  S  L  C  V  N  R  R  L  H  N  *  I  A  G  A  V  F  A  V  E  *  R  S  G  L  L  W  Y  S  F  A  *  F  C  H  P  F  *  L  V  R  *  P  L  *  G  *  D  A  D  *  L  I  M  G  L  K  N  L  K  Q  L  T  P  F  I  K  E  A  F  Q  Q  T  L  L  V  A  K  F  L  C  G  I  H  V  V  N  S  Y  I  C  T  L  A  L  :  T  Q  G  P  S  M  L  P  T  F  S  L  T  G  D  L  V  L  A  E  R  L  S  T  R  F  E  K  M  Q  R  G  D  V  V  L  V  R  S  P  E  N  P  R  K  I  V  I  K  R  I  M  G  M  G  S  D  T  V  R  Y  V  V  D  H  A  N  N  G  I  E  H  T  I  V   </second_frame>
            <third_frame>   K  L  K  G  L  L  *  K  I  F  F  S  T  F  S  T  P  E  N  A  Q  L  D  H  Q  I  P  G  C  V  R  C  A  S  I  G  D  C  T  I  K  *  R  G  P  C  S  P  S  S  R  G  L  G  Y  C  G  T  L  S  P  D  S  V  I  H  F  N  W  *  D  S  L  F  R  V  E  M  Q  I  D  *  *  W  V  *  K  I  *  S  N  *  R  L  L  S  K  K  H  F  S  K  H  Y  S  *  P  N  S  S  V  V  F  M  W  S  T  A  I  S  A  P  *  L  S :   L  K  V  Q  A  C  F  Q  R  L  V  *  L  E  I  L  F  W  L  K  G  Y  Q  L  G  L  R  K  C  N  V  E  M  *  C  *  C  V  A  L  R  T  R  E  K  L  *  S  K  E  S  W  A  W  V  V  I  L  L  D  M  L  W  I  M  Q  I  M  E  *  N  I  L  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54652" stop="54783"/>
                    <exon start="54898" stop="55122"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMGLKNLKQLTPFIKEAFQQTLLVAKFLCGIHVVNSYICTLALTQGPSMLPTFSLTGDLVLAERLSTRFEKMQRGDVVLVRSPENPRKIVIKRIMGMGSDTVRYVVDHANNGIEHTIV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54477" stop="54783"/>
                    <exon start="54898" stop="54929"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTKFRAVFAVRQSEIAQLNSGGRVRRRVEVWVTVVLFRLILSSILIGEIASLGLRCRLTNNGSEKSEAIDAFYQRSISANITRSQIPLWYSCGQQLYLHLSSHSRSKHASNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="58707" PGL_stop="57798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58707" e_stop="58558"/>
            <exon e_start="58091" e_stop="57798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58707" e_stop="58558" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="58557" i_stop="58092" i_length="466"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="58091" e_stop="57798" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58707" stop="58558"/>
              <exon start="58091" stop="57798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCATTTGTGCTATGGGTGATGAGAGAACTACCACCTCCACTTGTCACTTTCAGTCAACAGGAGTCGAGGACAATAGCTTTTATAAATGACAGTTCAGCGACAGTACAGCCTCAGCGATGGACAGCTGCTGCAAGTGTGCAAAATCAG : GTCTCAAGGGCGAGCCCCATATGATCACCGTGATGGAATTTGTAAATTGATTGGTGATTTTCAGCTAGAGTGAAGGACTGACAATACTAAAAATGAAAGAACTTCTCAGTTGAGTGGTCGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGATAAAAAATACCCCTTGCAACTAAGTAAGGTGGTTGCTCAGGGTACACATGCCTGCATAACTTGGATTCTTGTACATAGCAATGAACTTTCTAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAG</gDNA_template>
            <first_frame> S  A  F  V  L  W  V  M  R  E  L  P  P  P  L  V  T  F  S  Q  Q  E  S  R  T  I  A  F  I  N  D  S  S  A  T  V  Q  P  Q  R  W  T  A  A  A  S  V  Q  N  Q  :  V  S  R  A  S  P  I  *  S  P  *  W  N  L  *  I  D  W  *  F  S  A  R  V  K  D  *  Q  Y  *  K  *  K  N  F  S  V  E  W  S  V  L  W  L  S  D  R  R  K  L  N  S  T  D  K  K  Y  P  L  Q  L  S  K  V  V  A  Q  G  T  H  A  C  I  T  W  I  L  V  H  S  N  E  L  S  K  F  Y  R  F  F  F  V  D  I  M  R  F  * </first_frame>
            <second_frame>  Q  H  L  C  Y  G  *  *  E  N  Y  H  L  H  L  S  L  S  V  N  R  S  R  G  Q  *  L  L  *  M  T  V  Q  R  Q  Y  S  L  S  D  G  Q  L  L  Q  V  C  K  I  R :   S  Q  G  R  A  P  Y  D  H  R  D  G  I  C  K  L  I  G  D  F  Q  L  E  *  R  T  D  N  T  K  N  E  R  T  S  Q  L  S  G  R  C  C  G  *  V  I  E  E  S  S  T  Q  R  I  K  N  T  P  C  N  *  V  R  W  L  L  R  V  H  M  P  A  *  L  G  F  L  Y  I  A  M  N  F  L  N  F  T  D  S  F  L  L  I  *  *  G  F   </second_frame>
            <third_frame>   S  I  C  A  M  G  D  E  R  T  T  T  S  T  C  H  F  Q  S  T  G  V  E  D  N  S  F  Y  K  *  Q  F  S  D  S  T  A  S  A  M  D  S  C  C  K  C  A  K  S   : G  L  K  G  E  P  H  M  I  T  V  M  E  F  V  N  *  L  V  I  F  S  *  S  E  G  L  T  I  L  K  M  K  E  L  L  S  *  V  V  G  V  V  V  E  *  S  K  K  A  Q  L  N  G  *  K  I  P  L  A  T  K  *  G  G  C  S  G  Y  T  C  L  H  N  L  D  S  C  T  *  Q  *  T  F  *  I  L  Q  I  L  F  C  *  Y  N  E  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57995" stop="57798"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNFSVEWSVLWLSDRRKLNSTDKKYPLQLSKVVAQGTHACITWILVHSNELSKFYRFFFVDIMRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="71772" PGL_stop="62058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71772" e_stop="71354"/>
            <exon e_start="67299" e_stop="67249"/>
            <exon e_start="65175" e_stop="65142"/>
            <exon e_start="63509" e_stop="63423"/>
            <exon e_start="63351" e_stop="63300"/>
            <exon e_start="62102" e_stop="62058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.974"/>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.568" e_score="0.977"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="71772" e_stop="71354" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="71353" i_stop="67300" i_length="4054"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67299" e_stop="67249" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="67248" i_stop="65176" i_length="2073"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65175" e_stop="65142" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.541">
            <gDNA_intron_boundary i_start="65141" i_stop="63510" i_length="1632"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="63509" e_stop="63423" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.568">
            <gDNA_intron_boundary i_start="63422" i_stop="63352" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63351" e_stop="63300" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="63299" i_stop="62103" i_length="1197"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62102" e_stop="62058" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71772" stop="71354"/>
              <exon start="67299" stop="67249"/>
              <exon start="65175" stop="65142"/>
              <exon start="63509" stop="63423"/>
              <exon start="63351" stop="63300"/>
              <exon start="62102" stop="62058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249750" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCAAAGAAAAAGATACCATCGAGGCTGCATAAAGAGAAAAAAAAGTAAGGGGAATTAGGAGAGTATCGTTTTGGATACCATTTCATTTTCTTTTTTACTTACTTCAAGACTTGTTTGTTGTAAGTGTTTTGGGTACATATATATACATATATACATATATATATATATATATATATATATATATATATATATAAGCTTATCATCATATTGTGTGTCCACGTTTTTTTCTCTGTATTAGAGGGGAAAGGGCTAAGAAGGATTGAGGCAGTGGATGGTTTTTTAAAAGGTAAAGAAAAAGAGTGAGAAGAACATGATTGAGTGGAGAGAAGGGACTTGTTATCCTAAGGCTTTAATGGGAGTGAATGTGGGTCTTGCTTCTGTCGATGCCGTTATTGCAGTTCTTGCTTTTGCTCAG : TTAATGAGAATTCACTCTCGGAATACACACAATGGCTGGACTCGTCAGAAA : GTATTTCACTTGATGATTGGATCTTCAAATTTGG : GTTATTTCCTTTATTTTATTTTGACAATTGTTGCCGCATGTAATGGTTGGATTTTCTGGTCGCACTCCTGTGGCTTTGTCGTTATGG : CTTTCCCCAAAATTCTTTTCCTTGCGGCATTTCTTCTTCTCCTTTCTTTCTG : GGTTGATCTTTGTCATCAGTCAAATGATGAAGAAGATGAAGATGA</gDNA_template>
            <first_frame> K  F  K  E  K  D  T  I  E  A  A  *  R  E  K  K  V  R  G  I  R  R  V  S  F  W  I  P  F  H  F  L  F  Y  L  L  Q  D  L  F  V  V  S  V  L  G  T  Y  I  Y  I  Y  T  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  *  A  Y  H  H  I  V  C  P  R  F  F  L  C  I  R  G  E  R  A  K  K  D  *  G  S  G  W  F  F  K  R  *  R  K  R  V  R  R  T  *  L  S  G  E  K  G  L  V  I  L  R  L  *  W  E  *  M  W  V  L  L  L  S  M  P  L  L  Q  F  L  L  L  L  S :   *  *  E  F  T  L  G  I  H  T  M  A  G  L  V  R  K :   Y  F  T  *  *  L  D  L  Q  I  W  :  V  I  S  F  I  L  F  *  Q  L  L  P  H  V  M  V  G  F  S  G  R  T  P  V  A  L  S  L  W  :  L  S  P  K  F  F  S  L  R  H  F  F  F  S  F  L  S   : G  L  I  F  V  I  S  Q  M  M  K  K  M  K  M  </first_frame>
            <second_frame>  N  S  K  K  K  I  P  S  R  L  H  K  E  K  K  K  *  G  E  L  G  E  Y  R  F  G  Y  H  F  I  F  F  F  T  Y  F  K  T  C  L  L  *  V  F  W  V  H  I  Y  T  Y  I  H  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  K  L  I  I  I  L  C  V  H  V  F  F  S  V  L  E  G  K  G  L  R  R  I  E  A  V  D  G  F  L  K  G  K  E  K  E  *  E  E  H  D  *  V  E  R  R  D  L  L  S  *  G  F  N  G  S  E  C  G  S  C  F  C  R  C  R  Y  C  S  S  C  F  C  S   : V  N  E  N  S  L  S  E  Y  T  Q  W  L  D  S  S  E   : S  I  S  L  D  D  W  I  F  K  F  G :   L  F  P  L  F  Y  F  D  N  C  C  R  M  *  W  L  D  F  L  V  A  L  L  W  L  C  R  Y  G :   F  P  Q  N  S  F  P  C  G  I  S  S  S  P  F  F  L  :  G  *  S  L  S  S  V  K  *  *  R  R  *  R  * </second_frame>
            <third_frame>   I  Q  R  K  R  Y  H  R  G  C  I  K  R  K  K  S  K  G  N  *  E  S  I  V  L  D  T  I  S  F  S  F  L  L  T  S  R  L  V  C  C  K  C  F  G  Y  I  Y  I  H  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  S  L  S  S  Y  C  V  S  T  F  F  S  L  Y  *  R  G  K  G  *  E  G  L  R  Q  W  M  V  F  *  K  V  K  K  K  S  E  K  N  M  I  E  W  R  E  G  T  C  Y  P  K  A  L  M  G  V  N  V  G  L  A  S  V  D  A  V  I  A  V  L  A  F  A  Q  :  L  M  R  I  H  S  R  N  T  H  N  G  W  T  R  Q  K  :  V  F  H  L  M  I  G  S  S  N  L   : G  Y  F  L  Y  F  I  L  T  I  V  A  A  C  N  G  W  I  F  W  S  H  S  C  G  F  V  V  M   : A  F  P  K  I  L  F  L  A  A  F  L  L  L  L  S  F  W :   V  D  L  C  H  Q  S  N  D  E  E  D  E  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71485" stop="71354"/>
                    <exon start="67299" stop="67249"/>
                    <exon start="65175" stop="65142"/>
                    <exon start="63509" stop="63423"/>
                    <exon start="63351" stop="63300"/>
                    <exon start="62102" stop="62060"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVKKKSEKNMIEWREGTCYPKALMGVNVGLASVDAVIAVLAFAQLMRIHSRNTHNGWTRQKVFHLMIGSSNLGYFLYFILTIVAACNGWIFWSHSCGFVVMAFPKILFLAAFLLLLSFWVDLCHQSNDEEDED</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="83069" PGL_stop="82226"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82998" e_stop="82226"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="82998" e_stop="82226" e_length="773"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82998" stop="82226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82998" stop="82373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82927" stop="82226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAACACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCGTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATCTAAGCAAGGTGGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAGATTTTTCTTGCCTAACAAAA</gDNA_template>
            <first_frame> S  H  V  H  H  D  L  G  *  G  I  C  R  K  C  M  F  F  H  K  G  Y  S  L  I  K  *  N  G  K  K  L  K  T  K  N  T  N  Y  L  S  P  R  T  L  H  *  G  R  E  I  M  V  G  E  A  M  C  V  R  I  I  L  A  V  H  *  I  F  R  K  I  H  K  L  A  R  I  A  A  *  Q  L  K  D  N  L  Y  K  H  C  F  L  P  F  T  E  H  Q  N  P  K  E  N  M  E  G  S  A  E  S  M  K  N  S  T  F  C  T  G  G  L  S  T  H  L  L  I  F  I  I  L  H  S  L  D  L  Q  T  C  T  N  V  F  *  A  L  W  M  Q  V  S  R  A  S  P  I  *  S  S  D  G  I  V  H  *  L  V  I  F  S  *  K  R  G  I  D  N  T  K  N  E  T  T  S  Q  L  S  G  W  C  C  G  *  V  I  E  E  S  S  T  Q  R  E  N  N  T  P  C  I  *  A  R  W  V  A  Q  G  I  H  A  C  I  T  W  I  S  V  Y  I  K  H  C  N  E  L  S  K  F  Y  R  F  F  F  V  D  I  M  R  F  *  I  F  L  A  *  Q   </first_frame>
            <second_frame>  V  M  C  I  M  I  L  A  R  E  Y  V  E  N  A  C  S  F  I  R  A  I  H  *  S  N  E  M  G  K  S  *  R  Q  R  T  Q  I  I  Y  L  L  A  H  Y  T  R  D  G  K  S  W  *  V  K  L  C  V  *  E  S  F  *  L  S  I  K  F  F  V  R  S  T  N  S  P  E  L  Q  L  S  S  *  K  T  T  Y  T  N  I  V  F  Y  L  S  P  N  I  K  T  Q  K  R  I  W  K  E  V  Q  N  Q  *  R  T  Q  L  S  A  L  E  V  F  P  L  I  Y  *  F  S  L  Y  Y  I  R  W  I  Y  K  L  V  P  M  C  S  E  H  C  G  C  R  S  Q  G  R  A  P  Y  D  H  L  M  E  L  Y  I  D  W  *  F  S  A  R  N  E  G  L  T  I  L  K  M  R  Q  L  L  S  *  V  V  G  V  V  V  E  *  S  K  K  A  Q  L  N  G  K  I  I  P  H  V  S  K  Q  G  G  L  L  R  V  Y  M  P  A  *  L  G  F  L  Y  I  S  N  I  A  M  N  F  P  N  F  T  D  S  F  L  L  I  *  *  G  F  R  F  F  L  P  N  K  </second_frame>
            <third_frame>   S  C  A  S  *  S  W  L  G  N  M  *  K  M  H  V  L  S  *  G  L  F  T  D  Q  M  K  W  E  K  V  E  D  K  E  H  K  L  F  I  S  S  H  I  T  L  G  T  G  N  H  G  R  *  S  Y  V  C  E  N  H  F  S  C  P  L  N  F  S  *  D  P  Q  T  R  Q  N  C  S  L  A  V  E  R  Q  L  I  Q  T  L  F  F  T  F  H  R  T  S  K  P  K  R  E  Y  G  R  K  C  R  I  N  E  E  L  N  F  L  H  W  R  S  F  H  S  F  I  D  F  H  Y  I  T  F  V  G  F  T  N  L  Y  Q  C  V  L  S  I  V  D  A  G  L  K  G  E  P  H  M  I  I  *  W  N  C  T  L  I  G  D  F  Q  L  E  T  R  D  *  Q  Y  *  K  *  D  N  F  S  V  E  W  L  V  L  W  L  S  D  R  R  K  L  N  S  T  G  K  *  Y  P  M  Y  L  S  K  V  G  C  S  G  Y  T  C  L  H  N  L  D  F  C  I  Y  Q  T  L  Q  *  T  F  Q  I  L  Q  I  L  F  C  *  Y  N  E  V  L  D  F  S  C  L  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82786" stop="82517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPQTRQNCSLAVERQLIQTLFFTFHRTSKPKREYGRKCRINEELNFLHWRSFHSFIDFHYITFVGFTNLYQCVLSIVDAGLKGEPHMII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83069" e_stop="83052"/>
            <exon e_start="82548" e_stop="82237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83069" e_stop="83052" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="83051" i_stop="82549" i_length="503"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="82548" e_stop="82237" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83069" stop="83052"/>
              <exon start="82548" stop="82237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426636" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGTGTGCAAAATCAG : GTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATCTAAGCAAGGTGGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAGATTTTTCTT</gDNA_template>
            <first_frame> A  S  V  Q  N  Q  :  V  S  R  A  S  P  I  *  S  S  D  G  I  V  H  *  L  V  I  F  S  *  K  R  G  I  D  N  T  K  N  E  T  T  S  Q  L  S  G  W  C  C  G  *  V  I  E  E  S  S  T  Q  R  E  N  N  T  P  C  I  *  A  R  W  V  A  Q  G  I  H  A  C  I  T  W  I  S  V  Y  I  K  H  C  N  E  L  S  K  F  Y  R  F  F  F  V  D  I  M  R  F  *  I  F  L </first_frame>
            <second_frame>  Q  V  C  K  I  R :   S  Q  G  R  A  P  Y  D  H  L  M  E  L  Y  I  D  W  *  F  S  A  R  N  E  G  L  T  I  L  K  M  R  Q  L  L  S  *  V  V  G  V  V  V  E  *  S  K  K  A  Q  L  N  G  K  I  I  P  H  V  S  K  Q  G  G  L  L  R  V  Y  M  P  A  *  L  G  F  L  Y  I  S  N  I  A  M  N  F  P  N  F  T  D  S  F  L  L  I  *  *  G  F  R  F  F   </second_frame>
            <third_frame>   K  C  A  K  S   : G  L  K  G  E  P  H  M  I  I  *  W  N  C  T  L  I  G  D  F  Q  L  E  T  R  D  *  Q  Y  *  K  *  D  N  F  S  V  E  W  L  V  L  W  L  S  D  R  R  K  L  N  S  T  G  K  *  Y  P  M  Y  L  S  K  V  G  C  S  G  Y  T  C  L  H  N  L  D  F  C  I  Y  Q  T  L  Q  *  T  F  Q  I  L  Q  I  L  F  C  *  Y  N  E  V  L  D  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0091J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="82239" PGL_stop="82470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82239" e_stop="82470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="82239" e_stop="82470" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82239" stop="82470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAATCTAAAACCTCATTATATCAACAAAAAAGAATCTGTAAAATTTGGAAAGTTCATTGCAATGTTTGATATATACAGAAATCCAAGTTATGCAGGCATGTATACCCTGAGCAACCCACCTTGCTTAGATACATGGGGTATTATTTTCCCGTTGAGTTGAGCTTTCTTCGATCACTCAACCACAACACCAACCACTCAACTGAGAAGTTGTCTCATTTTTAGTATTGTC</gDNA_template>
            <first_frame> E  K  S  K  T  S  L  Y  Q  Q  K  R  I  C  K  I  W  K  V  H  C  N  V  *  Y  I  Q  K  S  K  L  C  R  H  V  Y  P  E  Q  P  T  L  L  R  Y  M  G  Y  Y  F  P  V  E  L  S  F  L  R  S  L  N  H  N  T  N  H  S  T  E  K  L  S  H  F  *  Y  C  </first_frame>
            <second_frame>  K  N  L  K  P  H  Y  I  N  K  K  E  S  V  K  F  G  K  F  I  A  M  F  D  I  Y  R  N  P  S  Y  A  G  M  Y  T  L  S  N  P  P  C  L  D  T  W  G  I  I  F  P  L  S  *  A  F  F  D  H  S  T  T  T  P  T  T  Q  L  R  S  C  L  I  F  S  I  V </second_frame>
            <third_frame>   K  I  *  N  L  I  I  S  T  K  K  N  L  *  N  L  E  S  S  L  Q  C  L  I  Y  T  E  I  Q  V  M  Q  A  C  I  P  *  A  T  H  L  A  *  I  H  G  V  L  F  S  R  *  V  E  L  S  S  I  T  Q  P  Q  H  Q  P  L  N  *  E  V  V  S  F  L  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0091J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="87422" PGL_stop="83257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87422" e_stop="87166"/>
            <exon e_start="87091" e_stop="87040"/>
            <exon e_start="85664" e_stop="85569"/>
            <exon e_start="84333" e_stop="84269"/>
            <exon e_start="83997" e_stop="83864"/>
            <exon e_start="83808" e_stop="83257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.382" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.972" e_score="0.985"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.761"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87422" e_stop="87166" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87165" i_stop="87092" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87091" e_stop="87040" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.382">
            <gDNA_intron_boundary i_start="87039" i_stop="85665" i_length="1375"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85664" e_stop="85569" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="85568" i_stop="84334" i_length="1235"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="84333" e_stop="84269" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.972">
            <gDNA_intron_boundary i_start="84268" i_stop="83998" i_length="271"/>
          </intron>
          <exon e_serial="5" e_score="0.761">
            <gDNA_exon_boundary e_start="83997" e_stop="83864" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83863" i_stop="83809" i_length="55"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="83808" e_stop="83257" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87422" stop="87166"/>
              <exon start="87091" stop="87040"/>
              <exon start="85664" stop="85569"/>
              <exon start="84333" stop="84269"/>
              <exon start="83997" stop="83864"/>
              <exon start="83808" stop="83690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85653" stop="85569"/>
              <exon start="84333" stop="84269"/>
              <exon start="83997" stop="83864"/>
              <exon start="83808" stop="83257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542433" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAG : CTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTG : GTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGG : GACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCTTCATCAGAAATGTGGAAG : GTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCGTATGTCTTCTGCTGGTCTCATGAGATGTCTTTTGTTTTGACTGCATAAGTTTCTAAGAG : TTTGTACATCTCTTCTCATGGTTTTATATTATTTTATAGGTACCCTTTAAAACTTGTGTTCCTTACTGAAAGCTTGATTTTAAATTCTAGACTTCAGTGGGAACTTCTGCTTTCTGCCTGCTAATTGTTGTTACCAATTGTTGAAGCTATGAGATTCTCCTCAAGCCCAACCCCTTATACCTAGGAGCTACTAACTGTAGTTAATTAGATGAAAAAGGCTGAACATGGTGGAAGGAACCAATTTAATAATCAGAGGTTGCTCTGATGATGTTACATAAGTGCATTAATATCGTAAACATTTTGAGGAGTTGTGAGATGTCTCTCTGGATCCTTTTTACAGAAGTTGGGAGCTATAGAGTAAGGACTTAACATAAGAGCTAGATTGGGACATATTAGATATTTCTTTAGAATTCGGGGCATGACTGAGAGGGGACTCCAGTTAATTTGTTCAACCAAGAATGCAAGTAGCGTGTACGTGTTTTGTTGGGGGGAGCTGATCTTACAATGCAGTTCTTTCCTACAAATTAGAATTTTATTCACAAAAAAAAGGGG</gDNA_template>
            <first_frame> L  I  L  D  M  E  L  *  *  T  T  C  A  R  V  Y  S  Y  L  N  T  L  P  L  S  S  F  I  F  Y  F  L  C  I  S  *  G  S  Y  C  P  A  S  N  S  M  N  R  S  L  T  L  F  S  C  R  L  F  P  L  F  F  V  D  S  C  C  C  M  *  G  L  D  F  L  A  H  S  C  G  F  V  V  M  G  S :   F  H  Q  N  S  F  P  C  C  I  S  S  S  P  F  F  L  :  V  T  L  L  V  F  L  L  M  L  V  A  A  V  L  I  W  I  G  R  G  R  N  P  I  D  S  S  V  L  A  R  :  D  W  Y  C  S  *  K  *  A  K  *  D  L  K  G  L  H  Q  K  C  G  R :   L  Q  A  W  Q  L  F  L  F  Y  V  S  L  *  V  S  C  R  L  I  H  R  Y  T  R  M  S  S  A  G  L  M  R  C  L  L  F  *  L  H  K  F  L  R   : V  C  T  S  L  L  M  V  L  Y  Y  F  I  G  T  L  *  N  L  C  S  L  L  K  A  *  F  *  I  L  D  F  S  G  N  F  C  F  L  P  A  N  C  C  Y  Q  L  L  K  L  *  D  S  P  Q  A  Q  P  L  I  P  R  S  Y  *  L  *  L  I  R  *  K  R  L  N  M  V  E  G  T  N  L  I  I  R  G  C  S  D  D  V  T  *  V  H  *  Y  R  K  H  F  E  E  L  *  D  V  S  L  D  P  F  Y  R  S  W  E  L  *  S  K  D  L  T  *  E  L  D  W  D  I  L  D  I  S  L  E  F  G  A  *  L  R  G  D  S  S  *  F  V  Q  P  R  M  Q  V  A  C  T  C  F  V  G  G  S  *  S  Y  N  A  V  L  S  Y  K  L  E  F  Y  S  Q  K  K  G  </first_frame>
            <second_frame>  *  F  W  T  W  N  F  D  K  P  P  V  H  V  Y  T  V  I  *  I  P  Y  L  Y  L  L  L  F  F  T  F  C  A  F  H  K  D  L  T  V  R  Q  V  I  V  *  I  G  H  *  L  Y  S  P  A  G  Y  F  L  Y  F  L  L  T  V  V  A  A  C  K  G  W  I  F  W  R  T  P  V  A  L  L  *  W  V   : A  F  T  R  I  L  F  L  A  A  F  L  L  L  L  S  F  W :   L  P  C  *  F  F  C  *  C  W  *  L  L  Y  *  Y  G  L  G  G  E  G  T  L  L  I  H  L  F  W  L  G :   T  G  I  V  L  E  N  E  Q  S  E  I  *  K  G  F  I  R  N  V  E   : G  C  R  L  G  S  C  F  C  S  M  F  H  F  K  *  A  V  A  L  F  T  D  I  P  V  C  L  L  L  V  S  *  D  V  F  C  F  D  C  I  S  F  *  E  :  F  V  H  L  F  S  W  F  Y  I  I  L  *  V  P  F  K  T  C  V  P  Y  *  K  L  D  F  K  F  *  T  S  V  G  T  S  A  F  C  L  L  I  V  V  T  N  C  *  S  Y  E  I  L  L  K  P  N  P  L  Y  L  G  A  T  N  C  S  *  L  D  E  K  G  *  T  W  W  K  E  P  I  *  *  S  E  V  A  L  M  M  L  H  K  C  I  N  I  V  N  I  L  R  S  C  E  M  S  L  W  I  L  F  T  E  V  G  S  Y  R  V  R  T  *  H  K  S  *  I  G  T  Y  *  I  F  L  *  N  S  G  H  D  *  E  G  T  P  V  N  L  F  N  Q  E  C  K  *  R  V  R  V  L  L  G  G  A  D  L  T  M  Q  F  F  P  T  N  *  N  F  I  H  K  K  K  G </second_frame>
            <third_frame>   N  F  G  H  G  T  L  I  N  H  L  C  T  C  I  Q  L  F  K  Y  L  T  F  I  F  F  Y  F  L  L  S  V  H  F  I  R  I  L  L  S  G  K  *  *  Y  E  S  V  I  N  F  I  L  L  Q  V  I  S  F  I  F  C  *  Q  L  L  L  H  V  R  V  G  F  S  G  A  L  L  W  L  C  C  N  G  *  :  L  S  P  E  F  F  S  L  L  H  F  F  F  S  F  L  S   : G  Y  P  V  S  F  S  V  N  V  G  S  C  C  T  N  M  D  W  E  G  K  E  P  Y  *  F  I  C  S  G  S   : G  L  V  L  F  L  K  M  S  K  V  R  S  E  R  A  S  S  E  M  W  K  :  V  A  G  L  A  V  V  S  V  L  C  F  T  L  S  E  L  S  P  Y  S  Q  I  Y  P  Y  V  F  C  W  S  H  E  M  S  F  V  L  T  A  *  V  S  K  S :   L  Y  I  S  S  H  G  F  I  L  F  Y  R  Y  P  L  K  L  V  F  L  T  E  S  L  I  L  N  S  R  L  Q  W  E  L  L  L  S  A  C  *  L  L  L  P  I  V  E  A  M  R  F  S  S  S  P  T  P  Y  T  *  E  L  L  T  V  V  N  *  M  K  K  A  E  H  G  G  R  N  Q  F  N  N  Q  R  L  L  *  *  C  Y  I  S  A  L  I  S  *  T  F  *  G  V  V  R  C  L  S  G  S  F  L  Q  K  L  G  A  I  E  *  G  L  N  I  R  A  R  L  G  H  I  R  Y  F  F  R  I  R  G  M  T  E  R  G  L  Q  L  I  C  S  T  K  N  A  S  S  V  Y  V  F  C  W  G  E  L  I  L  Q  C  S  S  F  L  Q  I  R  I  L  F  T  K  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87212" stop="87166"/>
                    <exon start="87091" stop="87040"/>
                    <exon start="85664" stop="85569"/>
                    <exon start="84333" stop="84316"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLDFLAHSCGFVVMGSFHQNSFPCCISSSPFFLVTLLVFLLMLVAAVLIWIGRGRNPIDSSVLARDWYCS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85587" stop="85569"/>
                    <exon start="84333" stop="84269"/>
                    <exon start="83997" stop="83875"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FICSGSGLVLFLKMSKVRSERASSEMWKVAGLAVVSVLCFTLSELSPYSQIYPYVFCWSHEMSFVLTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87421" e_stop="87166"/>
            <exon e_start="87091" e_stop="87040"/>
            <exon e_start="85664" e_stop="85569"/>
            <exon e_start="84333" e_stop="84269"/>
            <exon e_start="83997" e_stop="83924"/>
            <exon e_start="83845" e_stop="83823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.382" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.972" e_score="0.985"/>
          <exon-intron don_prob="0.786" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87421" e_stop="87166" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87165" i_stop="87092" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87091" e_stop="87040" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.382">
            <gDNA_intron_boundary i_start="87039" i_stop="85665" i_length="1375"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85664" e_stop="85569" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="85568" i_stop="84334" i_length="1235"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="84333" e_stop="84269" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.972">
            <gDNA_intron_boundary i_start="84268" i_stop="83998" i_length="271"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83997" e_stop="83924" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.786" acc_prob="0.926">
            <gDNA_intron_boundary i_start="83923" i_stop="83846" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83845" e_stop="83823" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87421" stop="87166"/>
              <exon start="87091" stop="87040"/>
              <exon start="85664" stop="85569"/>
              <exon start="84333" stop="84269"/>
              <exon start="83997" stop="83924"/>
              <exon start="83845" stop="83823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAG : CTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTG : GTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGG : GACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCTTCATCAGAAATGTGGAAG : GTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCC : CTTCTTTTCAACTGGCGTGGACA</gDNA_template>
            <first_frame> *  F  W  T  W  N  F  D  K  P  P  V  H  V  Y  T  V  I  *  I  P  Y  L  Y  L  L  L  F  F  T  F  C  A  F  H  K  D  L  T  V  R  Q  V  I  V  *  I  G  H  *  L  Y  S  P  A  G  Y  F  L  Y  F  L  L  T  V  V  A  A  C  K  G  W  I  F  W  R  T  P  V  A  L  L  *  W  V   : A  F  T  R  I  L  F  L  A  A  F  L  L  L  L  S  F  W :   L  P  C  *  F  F  C  *  C  W  *  L  L  Y  *  Y  G  L  G  G  E  G  T  L  L  I  H  L  F  W  L  G :   T  G  I  V  L  E  N  E  Q  S  E  I  *  K  G  F  I  R  N  V  E   : G  C  R  L  G  S  C  F  C  S  M  F  H  F  K  *  A  V  A  L  F  T  D  I  P  :  L  L  F  N  W  R  G   </first_frame>
            <second_frame>  N  F  G  H  G  T  L  I  N  H  L  C  T  C  I  Q  L  F  K  Y  L  T  F  I  F  F  Y  F  L  L  S  V  H  F  I  R  I  L  L  S  G  K  *  *  Y  E  S  V  I  N  F  I  L  L  Q  V  I  S  F  I  F  C  *  Q  L  L  L  H  V  R  V  G  F  S  G  A  L  L  W  L  C  C  N  G  *  :  L  S  P  E  F  F  S  L  L  H  F  F  F  S  F  L  S   : G  Y  P  V  S  F  S  V  N  V  G  S  C  C  T  N  M  D  W  E  G  K  E  P  Y  *  F  I  C  S  G  S   : G  L  V  L  F  L  K  M  S  K  V  R  S  E  R  A  S  S  E  M  W  K  :  V  A  G  L  A  V  V  S  V  L  C  F  T  L  S  E  L  S  P  Y  S  Q  I  Y  P :   F  F  S  T  G  V  D  </second_frame>
            <third_frame>   I  L  D  M  E  L  *  *  T  T  C  A  R  V  Y  S  Y  L  N  T  L  P  L  S  S  F  I  F  Y  F  L  C  I  S  *  G  S  Y  C  P  A  S  N  S  M  N  R  S  L  T  L  F  S  C  R  L  F  P  L  F  F  V  D  S  C  C  C  M  *  G  L  D  F  L  A  H  S  C  G  F  V  V  M  G  S :   F  H  Q  N  S  F  P  C  C  I  S  S  S  P  F  F  L  :  V  T  L  L  V  F  L  L  M  L  V  A  A  V  L  I  W  I  G  R  G  R  N  P  I  D  S  S  V  L  A  R  :  D  W  Y  C  S  *  K  *  A  K  *  D  L  K  G  L  H  Q  K  C  G  R :   L  Q  A  W  Q  L  F  L  F  Y  V  S  L  *  V  S  C  R  L  I  H  R  Y  T   : P  S  F  Q  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87212" stop="87166"/>
                    <exon start="87091" stop="87040"/>
                    <exon start="85664" stop="85569"/>
                    <exon start="84333" stop="84316"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLDFLAHSCGFVVMGSFHQNSFPCCISSSPFFLVTLLVFLLMLVAAVLIWIGRGRNPIDSSVLARDWYCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="-" PGL_start="90768" PGL_stop="90144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90768" e_stop="90144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="90768" e_stop="90144" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90768" stop="90144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90768" stop="90186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGTCCGGAACTGCACTTTTTGGCGTCTATTGGAATGGGTTTTGATTACCAACATAACGAATTATTGATCTTGAGAATCTTTTGTGTGGGCATAATGTTTGCAGTCCCGAACCACATTTGAGGTTTATTCGAGTGAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGTTTTTTCATATTGTTGAGTTAACTTGCAATGTGATTGTTAAAAGATGGCGTATTGGTTGGTTTGTATGCCTGGTAAGTTCGGATCACGTGCTGTGTTAGTGCGATTTGATGTGGGGAAACTAGTGTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGCAGGGTTCTCTTTGTATGTAAGACTGGGATCATAAAGATGATTGTCATATGGATGGATGTTTGGGTAATGGATGATGTTGATGGTTGGAGTAAGAAATACAGCGTTGGACCATTAATCGGATTTTTTGACCGAATCTTGGGTTGTTTGAGGAATGGTGACATTGTAGCTAAGAATGAAATGGAGTGATATCCTTGTGTGAACCCATATCTAATTCAGTCAAGGAAAATTTCAGCATTGATAATAGCAATGATGAATCATATGTGATTGTTGA</gDNA_template>
            <first_frame> L  V  R  N  C  T  F  W  R  L  L  E  W  V  L  I  T  N  I  T  N  Y  *  S  *  E  S  F  V  W  A  *  C  L  Q  S  R  T  T  F  E  V  Y  S  S  E  S  G  K  W  K  K  L  K  N  E  M  F  F  H  I  V  E  L  T  C  N  V  I  V  K  R  W  R  I  G  W  F  V  C  L  V  S  S  D  H  V  L  C  *  C  D  L  M  W  G  N  *  C  L  R  S  Y  L  R  *  E  G  V  R  S  I  N  I  L  W  N  C  R  V  L  F  V  C  K  T  G  I  I  K  M  I  V  I  W  M  D  V  W  V  M  D  D  V  D  G  W  S  K  K  Y  S  V  G  P  L  I  G  F  F  D  R  I  L  G  C  L  R  N  G  D  I  V  A  K  N  E  M  E  *  Y  P  C  V  N  P  Y  L  I  Q  S  R  K  I  S  A  L  I  I  A  M  M  N  H  M  *  L  L  </first_frame>
            <second_frame>  S  S  G  T  A  L  F  G  V  Y  W  N  G  F  *  L  P  T  *  R  I  I  D  L  E  N  L  L  C  G  H  N  V  C  S  P  E  P  H  L  R  F  I  R  V  R  V  G  N  G  R  S  *  K  M  R  C  F  F  I  L  L  S  *  L  A  M  *  L  L  K  D  G  V  L  V  G  L  Y  A  W  *  V  R  I  T  C  C  V  S  A  I  *  C  G  E  T  S  V  *  E  V  T  F  D  R  K  A  *  E  A  S  I  S  C  G  I  A  G  F  S  L  Y  V  R  L  G  S  *  R  *  L  S  Y  G  W  M  F  G  *  W  M  M  L  M  V  G  V  R  N  T  A  L  D  H  *  S  D  F  L  T  E  S  W  V  V  *  G  M  V  T  L  *  L  R  M  K  W  S  D  I  L  V  *  T  H  I  *  F  S  Q  G  K  F  Q  H  *  *  *  Q  *  *  I  I  C  D  C  * </second_frame>
            <third_frame>   R  P  E  L  H  F  L  A  S  I  G  M  G  F  D  Y  Q  H  N  E  L  L  I  L  R  I  F  C  V  G  I  M  F  A  V  P  N  H  I  *  G  L  F  E  *  E  W  E  M  E  E  A  E  K  *  D  V  F  S  Y  C  *  V  N  L  Q  C  D  C  *  K  M  A  Y  W  L  V  C  M  P  G  K  F  G  S  R  A  V  L  V  R  F  D  V  G  K  L  V  F  E  K  L  P  S  I  G  R  R  K  K  H  Q  Y  L  V  E  L  Q  G  S  L  C  M  *  D  W  D  H  K  D  D  C  H  M  D  G  C  L  G  N  G  *  C  *  W  L  E  *  E  I  Q  R  W  T  I  N  R  I  F  *  P  N  L  G  L  F  E  E  W  *  H  C  S  *  E  *  N  G  V  I  S  L  C  E  P  I  S  N  S  V  K  E  N  F  S  I  D  N  S  N  D  E  S  Y  V  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0091J18.1" strand="-"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90450" stop="90229"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGVRSINILWNCRVLFVCKTGIIKMIVIWMDVWVMDDVDGWSKKYSVGPLIGFFDRILGCLRNGDIVAKNEME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="92357" PGL_stop="90962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92347" e_stop="92208"/>
            <exon e_start="91201" e_stop="90962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.929"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="92347" e_stop="92208" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92207" i_stop="91202" i_length="1006"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="91201" e_stop="90962" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92347" stop="92208"/>
              <exon start="91201" stop="90962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92292" stop="92208"/>
              <exon start="91201" stop="90962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAGAACACTGAAAATTTTTCTTTCTCTGCATATTTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGATTGAGTCTGTGTGACTTGTTCCTGTTCTT : CAGTTCGTCGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAATTTCTGTGGACTCGGATTAATTCTTGTATTTTTAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAA</gDNA_template>
            <first_frame> L  A  E  N  G  Y  K  R  K  S  I  F  D  F  *  E  H  *  K  F  F  F  L  C  I  F  F  L  S  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  F  L  F  F :   S  S  S  K  L  K  K  F  E  V  P  L  F  L  *  *  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  F  N  F  F  C  F  I  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N   </first_frame>
            <second_frame>  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  K  N  T  E  N  F  S  F  S  A  Y  F  F  S  Q  N  K  I  K  V  S  I  D  *  V  C  V  T  C  S  C  S   : S  V  R  R  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  N  F  C  G  L  G  L  I  L  V  F  L  I  F  S  A  S  S  C  F  C  F  C  S  L  T  S  *  I  Q  V  I  V  R  I  T  </second_frame>
            <third_frame>   C  *  K  W  L  *  K  E  V  N  F  *  F  L  R  T  L  K  I  F  L  S  L  H  I  F  S  L  K  I  K  S  K  C  R  S  I  E  S  V  *  L  V  P  V  L  :  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  I  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  I  S  V  D  S  D  *  F  L  Y  F  *  F  F  L  L  H  L  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0091J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92357" e_stop="92214"/>
            <exon e_start="91207" e_stop="91124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.924"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="92357" e_stop="92214" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92213" i_stop="91208" i_length="1006"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="91207" e_stop="91124" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92357" stop="92214"/>
              <exon start="91207" stop="91124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAGAACACTGAAAATTTTTCTTTCTCTGCATATTTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGATTGAGTCTGTGTGACTTGTTCCT : GTTCTTCAGTTCGTCGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATT</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  L  R  T  L  K  I  F  L  S  L  H  I  F  S  L  K  I  K  S  K  C  R  S  I  E  S  V  *  L  V  P  :  V  L  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  I  G  L  I  R  F  I  L  G  E  I </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  *  E  H  *  K  F  F  F  L  C  I  F  F  L  S  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  F  L :   F  F  S  S  S  K  L  K  K  F  E  V  P  L  F  L  *  *  V  *  S  V  L  S  W  E  K   </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  K  N  T  E  N  F  S  F  S  A  Y  F  F  S  Q  N  K  I  K  V  S  I  D  *  V  C  V  T  C  S   : C  S  S  V  R  R  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0091J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="+" PGL_start="91200" PGL_stop="91987"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91200" e_stop="91987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="91200" e_stop="91987" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91200" stop="91987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGAACTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTTACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTAAAAACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGAAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGTGCGGACCTGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTGGTTAATTTTTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATCAAATAAATAATTAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATTTGCCAAAGCCAAAGCCGAAGCGAGCGA</gDNA_template>
            <first_frame> *  R  T  V  A  N  L  C  *  E  N  Q  K  L  L  V  V  I  N  H  S  E  T  R  S  N  *  D  F  *  N  Q  *  I  R  *  T  E  I  Y  L  *  K  *  F  N  L  *  N  L  P  E  S  *  I  L  F  L  I  I  *  E  E  N  Q  V  H  *  I  Y  S  V  P  L  R  K  L  F  P  S  S  I  R  G  L  I  W  N  I  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  A  N  Q  S  T  A  G  K  Y  T  K  K  N  V  F  F  K  K  *  E  D  Q  K  I  R  *  *  I  F  *  K  L  N  G  I  Y  R  Q  E  *  Y  I  L  K  G  C  N  P  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  G  G  N  F  *  I  *  R  N  L  K  R  V  T  R  A  D  L  S  R  V  G  L  T  K  K  L  K  T  F  R  L  V  N  F  C  Y  Q  L  I  N  *  K  *  F  L  A  I  *  L  I  K  *  I  I  K  I  N  L  S  K  K  L  S  L  D  R  F  A  K  A  K  A  E  A  S   </first_frame>
            <second_frame>  E  E  L  L  P  I  C  V  K  K  I  R  N  Y  W  L  *  *  I  I  Q  K  H  E  V  T  E  I  F  R  T  S  K  *  D  E  Q  K  F  I  C  K  N  N  L  I  C  K  T  Y  Q  N  L  E  Y  S  F  *  *  F  R  K  K  I  K  S  T  E  F  T  V  S  P  *  G  N  Y  S  P  L  V  S  E  V  *  F  G  I  *  P  P  R  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  K  M  C  F  L  R  S  R  K  I  R  K  F  V  S  K  Y  S  K  N  *  M  V  F  I  G  K  N  N  I  F  *  K  V  A  T  L  S  E  L  T  Q  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  A  E  I  F  K  Y  N  G  I  *  N  G  S  R  V  R  T  *  V  G  S  G  *  L  K  S  *  K  H  F  G  W  L  I  F  V  I  N  *  L  I  E  N  N  F  W  P  F  N  *  S  N  K  *  L  K  *  I  C  P  K  N  Y  L  S  I  D  L  P  K  P  K  P  K  R  A  </second_frame>
            <third_frame>   K  N  C  C  Q  S  V  L  R  K  S  E  I  T  G  C  D  K  S  F  R  N  T  K  *  L  R  F  L  E  P  V  N  K  M  N  R  N  L  F  V  K  I  I  *  S  V  K  L  T  R  I  L  N  T  L  F  D  N  L  G  R  K  S  S  P  L  N  L  Q  C  P  L  K  E  I  I  P  L  *  Y  P  R  F  D  L  E  Y  N  L  P  G  *  N  D  L  N  Q  *  S  I  D  T  K  N  S  T  V  S  E  S  I  H  S  R  K  V  H  E  E  K  C  V  F  *  E  V  G  R  S  E  N  S  L  V  N  I  L  K  T  E  W  Y  L  *  A  R  I  I  Y  S  E  R  L  Q  P  F  Q  N  *  H  N  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  W  R  K  F  L  N  I  T  E  F  K  T  G  H  A  C  G  P  E  S  G  R  V  N  *  K  V  E  N  I  S  V  G  *  F  L  L  S  T  D  *  L  K  I  I  F  G  H  L  I  N  Q  I  N  N  *  N  K  F  V  Q  K  I  I  S  R  S  I  C  Q  S  Q  S  R  S  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0091J18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 2556 chains have been computed
$ 
$ memory statistics:
$ 2962560 bytes spliced alignments in total
$ 1104 spliced alignments have been stored
$ 2683 bytes was the average size of a spliced alignment
$ 59352 bytes predicted gene locations in total
$ 29 predicted gene locations have been stored
$ 2046 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 3018 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:25:02
-->
