<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:46:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223912" ref_strand="+" ref_description="SGN-E223912 [cLEL-19-G9](-)">
      <seq>cattcttccaaaagttcctggccgtttttacttctactttggcaagccaattgaaacagcagggaggaaggaggaacttaaaagcaaggagaaagcacatgaattatacttggaagtgaagtctgaggttgagagatgtattgattacctgaaggagaaaagagagagtgattcgtataggaatataatggcccgcctgccttaccaggctagccatggctttgattctgaagttcccacctttgatctatagtattatgtaaaagaagaacaaaagaaaatacttaatactgttgcagcgatcgagttgatcaatgtgtagagcgcagtattagttaaaaggtaccagcgtaggccaaacctatagtataatgtaatattaagtttaatgataatgccctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="2482" stop="1383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2182" g_stop="2121" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2120" i_stop="2028" i_length="93">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2027" g_stop="1685" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="405" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="423"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E223912" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2182" e_stop="2121"/>
          <exon e_start="2027" e_stop="1685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTTCCGAAAGTTCCTGGCCGTTTTTACTTCTACTTTGGCAAGCCAATTGAAACAGCAGGTAATTTGTGAAGTATATTTGAGTGTATTCTTGACGTATATATATATATATATATATATATGGTTTAATTTAGTTGTTGTTTGCGCTTTGCAGGGAGGAAGGAGGAACTTAAAAGCAAGGAGAAAGCACATGAATTATACTTGGAAGTGAAGTCTGAGGTTGAGAGATGTATTGATTACCTGAAGGAGAAAAGAGAGAGTGATTCGTATAGGAATATAATGGCCCGCCTGCCTTACCAGGCTAGCCATGGCTTTGATTCTGAAGTTCCCACCTTTGATCTATAGTATTATGTAAAAGAAGAACAAAAGAAAATACTTAATACTGTTGCAGCGATCGAGTTGATCAATGTGTAGAGCGCAGTATTAGTTAAAAGGTACCAGCGTAGGCCAAACCTATAGTATAATGTAATATTAAGTTTAATGATAATGCCCTAAAA</genome_strand>
        <mrna_strand>CATTCTTCCAAAAGTTCCTGGCCGTTTTTACTTCTACTTTGGCAAGCCAATTGAAACAGCAG.............................................................................................GGAGGAAGGAGGAACTTAAAAGCAAGGAGAAAGCACATGAATTATACTTGGAAGTGAAGTCTGAGGTTGAGAGATGTATTGATTACCTGAAGGAGAAAAGAGAGAGTGATTCGTATAGGAATATAATGGCCCGCCTGCCTTACCAGGCTAGCCATGGCTTTGATTCTGAAGTTCCCACCTTTGATCTATAGTATTATGTAAAAGAAGAACAAAAGAAAATACTTAATACTGTTGCAGCGATCGAGTTGATCAATGTGTAGAGCGCAGTATTAGTTAAAAGGTACCAGCGTAGGCCAAACCTATAGTATAATGTAATATTAAGTTTAATGATAATGCCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223793" ref_strand="+" ref_description="SGN-E223793 [cLEL-19-G9](-)">
      <seq>ggttgagagatgtattgattacctgaaggagaaaagacagagtgattcgtataggaatataatggcccgcctgccttaccaggctagccatggctttgattctgaagttcccacctttgatctatagtattatgtaaaagaagaacaaaagaaaatacttaatactgttgcagcgatcgagttgatcaatgtgtagagcgcagtattagttaaaaggtaccagcgtaggccaaacctatagtataatgtaatattaagtttaatgataatgccctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="2263" stop="1383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1963" g_stop="1685" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="280" polyA_stop="297"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E223793" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1963" e_stop="1685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAGAGATGTATTGATTACCTGAAGGAGAAAAGAGAGAGTGATTCGTATAGGAATATAATGGCCCGCCTGCCTTACCAGGCTAGCCATGGCTTTGATTCTGAAGTTCCCACCTTTGATCTATAGTATTATGTAAAAGAAGAACAAAAGAAAATACTTAATACTGTTGCAGCGATCGAGTTGATCAATGTGTAGAGCGCAGTATTAGTTAAAAGGTACCAGCGTAGGCCAAACCTATAGTATAATGTAATATTAAGTTTAATGATAATGCCCTAAAA</genome_strand>
        <mrna_strand>GGTTGAGAGATGTATTGATTACCTGAAGGAGAAAAGACAGAGTGATTCGTATAGGAATATAATGGCCCGCCTGCCTTACCAGGCTAGCCATGGCTTTGATTCTGAAGTTCCCACCTTTGATCTATAGTATTATGTAAAAGAAGAACAAAAGAAAATACTTAATACTGTTGCAGCGATCGAGTTGATCAATGTGTAGAGCGCAGTATTAGTTAAAAGGTACCAGCGTAGGCCAAACCTATAGTATAATGTAATATTAAGTTTAATGATAATGCCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702485" ref_strand="+" ref_description="SGN-E702485 [FA18DD10]">
      <seq>ggttgaagcaactgttagatcagagcatcaccatgctccaagacgtcccatatatcttcttggagaatcttttgggggatgccttgcacttgctgttgctgctcgtaatcctcatattgatcttgcactaattttggcaaacccagccactcgtctacgtgaatctcagctggaaaatctgataacgttgtgcgaagtcattcctgagcaactccatccaagcatggttaaactgttaagtgtgacgacaggtgttccagcaaggttggcagtggcaattcctggcagtggacactctttgcaacaagcagtagcagagttatttcgtggtgatgtagcattttcatcctacttatctgtgctggctgatgttttacctgtggaaacacttatttggaggctgaagattctcaaatcagctgcatcttttgtcagttctcgcctccatgctgtcagatctcagactttggtactctcgagtggaaaagatcacttgatatcaagcccagaggaatccgagaagcttcacaagatgcttccaaactgtgaaatccggaaatttaataacagtgggcatgcccttctcctggaagcagactttaatttggtaactgtcataatgggtgccaatttttatcgacgtggaagacaccttgatttcgttagagattttgtgccaccaagcacttctgagtttgacagtgtgtatcaaccatacaggtggatggaagttgccttcaatcctgtgatgatatcaactcttgagaatgggaatattgttcggggtctgactggaattccttctgaaggaccagtcttacttgttggttaccacatgatgcttggacttgaactagttcctttggtgtcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="8829" stop="4100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8529" g_stop="8384" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8383" i_stop="8296" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8295" g_stop="8191" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="251" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8190" i_stop="7100" i_length="1091">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7099" g_stop="6993" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="358" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6992" i_stop="6673" i_length="320">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6672" g_stop="6551" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="480" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6550" i_stop="6315" i_length="236">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6314" g_stop="6206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="589" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6205" i_stop="5262" i_length="944">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5261" g_stop="5131" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="720" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5130" i_stop="4554" i_length="577">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4553" g_stop="4400" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="874" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E702485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8529" e_stop="8384"/>
          <exon e_start="8295" e_stop="8191"/>
          <exon e_start="7099" e_stop="6993"/>
          <exon e_start="6672" e_stop="6551"/>
          <exon e_start="6314" e_stop="6206"/>
          <exon e_start="5261" e_stop="5131"/>
          <exon e_start="4553" e_stop="4400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAGGTTCACAAAGCATGTCATCATAATTTTACGAGAGATATTTATAATGCTTGAATCATTTCATAGTTCTTATTGCAAAGATGTGTCTCAGCCACTCGTCTACGTGAATCTCAGCTGGAAAATCTGATAACGTTGTGCGAAGTCATTCCTGAGCAACTCCATCCAAGCATGGTTAAACTGTTAAGTGTGACGACAGGTTATTGTACCTTCATCCTCCGATTTATGAGTATAATAGTTTAAGTAGATGGAACTTTGTCTTGCCAAACTAGCATATTAATAACTGCTAACATCTCTTAGTTTTATACTTTGGTAATATTTGTTTGGAGTTTCCAGAAACTAAGTTTGTTTTGTGTTTTTATAAAAGCTGTTTGTTTTTTTGAATGATTTTTCCGGAAAAGGTTAACTTTTTAAAAATATTCTCACACTCATTTTTTCAGTTCTTCCAAAAAGAGTTGCTTTTCCTGCATCTCCTTGATTACCATGCTAGATGAAATGTGAAGTGTTTGGTTTGATAGATGAATGAGCCTACCTTCAGGAATATTTTTCTTCTGAATCTTTTATAAGAATCTTGTTGACTAGAATTGTAGGTGGAAACATGCTAATCATGCTGTCCAGTCACTAATTAAGATGTTTACTTCCCAATCTACTTCAGTATATATAATCACACATCTCATACTTCACATTGTATCTTTCTCCTAAAGACGTGTGTATCTGTTGAGACAAAACATACTTGTTCAAAGTGTGCACTGTGCAGCAACTTATCTGGGTCTTGTTTGTTTCTAACTTGCACCACAAACTTTTACTCAACTTGAACAGTTTGACTGCTGAGCCAGCAAAACCAATTACTTGAAGAACTTAATCCTGATATTGAACAAATCATTCAGCTCTATTATCTGTATGCATAATTCTTTAAAAAGCAATAGATCTAGCAAAACCCTCTTCTTGTTATTACCAAATGTATTTGAAACTTCTCTTGATAAAGTATATGCATATGTTCACACTTGATCTTTTAACACTTGCATGGATAAATTTACATCTTTTAGTTTTAGTTATCATGTTTATTGGTACTAAATCCCTCCTTAATATTGGGCTGTGAAGTGCTCAAAATGGAGTGACATGAATTGTTCTGATTGATATAGCTGACCAACTTGCTTGGGATTGACTTGTAGTTGTTGATTGGAACTAAATAACTTCAGTGGATACTTCTTGCTTAAATTGGTTTACTTAGTTCACTTTGTGGTTAACTTTTAGATGAAAATTGACAAGTGATTGAGTTAAATTGATTAGGTGTTCCAGCAAGGTTGGCAGTGGCAATTCCTGGCAGTGGACACTCTTTGCAACAAGCAGTAGCAGAGTTATTTCGTGGTGATGTAGCATTTTCATCCTACTTATCTGTAAGGTCCAAAAGTCTTAAACTCATAAGGTTAAATTGTGAAAGCTATCCCTCTTAATCTTAAAGCTTGGTCACCCTAAAAAGAATTTGTTGCATTTGGACATTTCATCAATATACTTTTTATGGCATCTTCTTAGCATAGATAAGATTCCCTTTCGTCACCATGTTTATCCATGTTGATATCTTCCTTTCCCACTCTAGCTTTGACACTTCAATAGTTTTGAAGACTTTAAACTTAGACAAACATTATTAGTTGATATTTTCAGTTGGAGTTTGTTCTTGTTGTCAGTTTGAGCAAGAAAATGATGAAAAAGGTCGCAGGTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAGGTAATTTTTCAGAGTTCCAGTGAGTCATCGGTTAAATTTAATGAAAGATTTTTAATGCCTACGCCTTCCGCATAGATAGTTGATTTTCTCTCTCTTGTCATCTTTACAAGAAGTTTGTTAATGTAAACTAGAATTGTTGTACTCTTTTCTTATTCCGAGCATTTTGAGCTATGTCCAATTCAGGTTAGCTTTTGCGACTGCCACTATGTGGGACTAAGAGTTATATTGCTATGCAGTGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTGGTAGGCTGTCTTCTTTTCAGACCCAATTCCTCTTTCTAACTTTCTAAATATTACTTTTGCTCTATACCATATTCATAACTGCTTATGCAAATGGTAATAGTTCTTTGTTTAGAATAATCTTTGTGAACAAACAACAAACAAAGCAGAGAACGTCTTGATTAGACTATGCATCAATTTAGATAGATTTTTTCAAGAATTCTGTGTCTGAAGTCCTGTTGAGGTTTATTCAATGACAAAAAAAGGAAAACAAGAAAAAGAAAGAGCATTTTAGTAAAAAATAATTGAGAACCCTTAGTGACTGAATAGGCTTGGGAATTAGTGAAGTAGGAGATGGGACCTCAAGGATCTGTTATGGGCATAGTGAGGTAAGATGATAGAACTTTCAGTTTGCTGGCAGTTGTGTGCTTTCTAGTTGCTGTGGCAAATGTAGGTCCTTGTCATTCATTTTATTTTTTGATCGTTGGGATATTCACTGCACTCTTACAACTTGAAATCATCCATGCAGTTTGTATACAAGCTATAGCTTTTGCTTTCATTTTCTATCATCTGCTGTAGATTATGATATCAGGTAAGCTACAGTCTTGATATAACACTTTTTTACTTTCTTTTTATCTTTGACAAGATTGAATATAAAAGTGCAACGGTTGCTTTCCAACAGAATTACTCTGTCAATATGATTCCATAACAAGCCACACAGTGGCATATTACATGCCTTACTTCCTAGAGAGAGATTTAGTACCCATGGCAGTGTATATATAATTCAATCGGTCACGTAGTCCTGCAATAGGCTACCTGTATGCTCTTAGTTCTGCATACGTAAAACTGGTTACTTCGGGTTCCTACAAAGATATTACTCCAGTTTTTATAGCATTCATACCGAAACTTATGCAAAAACATCTTTTCATCTTTTCTGGGGTATATGAGAAGTTGAAGTTTTTATGCAGGAAGCAGACTTTAATTTGGTAACTGTCATAATGGGTGCCAATTTTTATCGACGTGGAAGACACCTTGATTTCGTTAGAGATTTTGTGCCACCAAGCACTTCTGAGTTTGACAGTGTGTATCAACCATACAGGTATTTTGTCATGCTCTAGTTGGAACACACTGACTATTGAAGTGTGTGACCATCTCATCTAAAAGCTTAAGGTGTTAGAGAGAACACACTTGTATTACTTAATTATATTCTCAATACACCCACTCATAACGACCGATGCTGATATTTTATTCGAGGAATCTGTCTGCTCTAATGCCATATTGAAGTGTGTGACCATCTCATCTCAAAGCTTAAACTGTTAGAGAGAAACACACGTATTATTTAATTATATTCTCAAAACTAACCACTAACCAGTCGGTAGGGGATTGTAGAGATGCATAATTTGTTTCCTGGTTATTTACAATGTGCTCTATGTTCATAGATATGGTATCTAGTTTAGGAGGTTCCATTCTGACAATGTATTTTTTGGTGGTCTTGCTTCTCTATATAAGATGCTACCTTAGGACTAAATTAGGGTTAAGCTAATCAGAAGCTCTTATTGGTGTAGTGAATCAACTCTTCTGCTCTGCTATTTATGTGTACTTAGTTCATTTGATATAAACACAAATACTGCAAGTTTATTTGATCATTATTTCTTGTGTGACTGATTAAAACACAGGTGGATGGAAGTTGCCTTCAATCCTGTGATGATATCAACTCTTGAGAATGGGAATATTGTTCGGGGTCTGACTGGAATTCCTTCTGAAGGACCAGTCTTACTTGTTGGTTACCACATGATGCTTGGACTTGAACTAGTTCCTTTGGTGTCCCGT</genome_strand>
        <mrna_strand>GGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAG........................................................................................CCACTCGTCTACGTGAATCTCAGCTGGAAAATCTGATAACGTTGTGCGAAGTCATTCCTGAGCAACTCCATCCAAGCATGGTTAAACTGTTAAGTGTGACGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCAGCAAGGTTGGCAGTGGCAATTCCTGGCAGTGGACACTCTTTGCAACAAGCAGTAGCAGAGTTATTTCGTGGTGATGTAGCATTTTCATCCTACTTATCT................................................................................................................................................................................................................................................................................................................................GTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAG............................................................................................................................................................................................................................................TGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAGACTTTAATTTGGTAACTGTCATAATGGGTGCCAATTTTTATCGACGTGGAAGACACCTTGATTTCGTTAGAGATTTTGTGCCACCAAGCACTTCTGAGTTTGACAGTGTGTATCAACCATACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGAAGTTGCCTTCAATCCTGTGATGATATCAACTCTTGAGAATGGGAATATTGTTCGGGGTCTGACTGGAATTCCTTCTGAAGGACCAGTCTTACTTGTTGGTTACCACATGATGCTTGGACTTGAACTAGTTCCTTTGGTGTCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366370" ref_strand="+" ref_description="SGN-E366370 [cLPT-1-M1]">
      <seq>gtgctggctgatgttttacctgtggaaacacttatctggaggctgaagattctcaaatcagctgcatcttttgtcagttctcgcctccatgctgtcagatctcagactttggtactctcgagtggaaaagatcacttgatatcaagcccagaggaatctgagaagcttcacaagatgcttccaaactgtgaaatccggagatttaataacagtgggcatgcccttctcctgactttaatttggtaactgtcataatgggtgccaatttttatcgacgtggaagacaccttgatttcgttagagattttgtgccaccaagcacttctgagtttgacagtgtgtatcaaccatacaggtggatggaagttgccttcaatcctgtgatgatatcaactcttgagaatgggaatattgttcggggtctgactggaattccttctgaaggaccagtcttacttgttggttaccacatgatgcttggacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="6972" stop="4123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6672" g_stop="6551" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6550" i_stop="6315" i_length="236">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6314" g_stop="6206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="231" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6205" i_stop="5255" i_length="951">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5254" g_stop="5131" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="355" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5130" i_stop="4554" i_length="577">
            <donor d_prob="0.797" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4553" g_stop="4423" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="486" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E366370" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6672" e_stop="6551"/>
          <exon e_start="6314" e_stop="6206"/>
          <exon e_start="5254" e_stop="5131"/>
          <exon e_start="4553" e_stop="4423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAGGTAATTTTTCAGAGTTCCAGTGAGTCATCGGTTAAATTTAATGAAAGATTTTTAATGCCTACGCCTTCCGCATAGATAGTTGATTTTCTCTCTCTTGTCATCTTTACAAGAAGTTTGTTAATGTAAACTAGAATTGTTGTACTCTTTTCTTATTCCGAGCATTTTGAGCTATGTCCAATTCAGGTTAGCTTTTGCGACTGCCACTATGTGGGACTAAGAGTTATATTGCTATGCAGTGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTGGTAGGCTGTCTTCTTTTCAGACCCAATTCCTCTTTCTAACTTTCTAAATATTACTTTTGCTCTATACCATATTCATAACTGCTTATGCAAATGGTAATAGTTCTTTGTTTAGAATAATCTTTGTGAACAAACAACAAACAAAGCAGAGAACGTCTTGATTAGACTATGCATCAATTTAGATAGATTTTTTCAAGAATTCTGTGTCTGAAGTCCTGTTGAGGTTTATTCAATGACAAAAAAAGGAAAACAAGAAAAAGAAAGAGCATTTTAGTAAAAAATAATTGAGAACCCTTAGTGACTGAATAGGCTTGGGAATTAGTGAAGTAGGAGATGGGACCTCAAGGATCTGTTATGGGCATAGTGAGGTAAGATGATAGAACTTTCAGTTTGCTGGCAGTTGTGTGCTTTCTAGTTGCTGTGGCAAATGTAGGTCCTTGTCATTCATTTTATTTTTTGATCGTTGGGATATTCACTGCACTCTTACAACTTGAAATCATCCATGCAGTTTGTATACAAGCTATAGCTTTTGCTTTCATTTTCTATCATCTGCTGTAGATTATGATATCAGGTAAGCTACAGTCTTGATATAACACTTTTTTACTTTCTTTTTATCTTTGACAAGATTGAATATAAAAGTGCAACGGTTGCTTTCCAACAGAATTACTCTGTCAATATGATTCCATAACAAGCCACACAGTGGCATATTACATGCCTTACTTCCTAGAGAGAGATTTAGTACCCATGGCAGTGTATATATAATTCAATCGGTCACGTAGTCCTGCAATAGGCTACCTGTATGCTCTTAGTTCTGCATACGTAAAACTGGTTACTTCGGGTTCCTACAAAGATATTACTCCAGTTTTTATAGCATTCATACCGAAACTTATGCAAAAACATCTTTTCATCTTTTCTGGGGTATATGAGAAGTTGAAGTTTTTATGCAGGAAGCAGACTTTAATTTGGTAACTGTCATAATGGGTGCCAATTTTTATCGACGTGGAAGACACCTTGATTTCGTTAGAGATTTTGTGCCACCAAGCACTTCTGAGTTTGACAGTGTGTATCAACCATACAGGTATTTTGTCATGCTCTAGTTGGAACACACTGACTATTGAAGTGTGTGACCATCTCATCTAAAAGCTTAAGGTGTTAGAGAGAACACACTTGTATTACTTAATTATATTCTCAATACACCCACTCATAACGACCGATGCTGATATTTTATTCGAGGAATCTGTCTGCTCTAATGCCATATTGAAGTGTGTGACCATCTCATCTCAAAGCTTAAACTGTTAGAGAGAAACACACGTATTATTTAATTATATTCTCAAAACTAACCACTAACCAGTCGGTAGGGGATTGTAGAGATGCATAATTTGTTTCCTGGTTATTTACAATGTGCTCTATGTTCATAGATATGGTATCTAGTTTAGGAGGTTCCATTCTGACAATGTATTTTTTGGTGGTCTTGCTTCTCTATATAAGATGCTACCTTAGGACTAAATTAGGGTTAAGCTAATCAGAAGCTCTTATTGGTGTAGTGAATCAACTCTTCTGCTCTGCTATTTATGTGTACTTAGTTCATTTGATATAAACACAAATACTGCAAGTTTATTTGATCATTATTTCTTGTGTGACTGATTAAAACACAGGTGGATGGAAGTTGCCTTCAATCCTGTGATGATATCAACTCTTGAGAATGGGAATATTGTTCGGGGTCTGACTGGAATTCCTTCTGAAGGACCAGTCTTACTTGTTGGTTACCACATGATGCTTGGACTTG</genome_strand>
        <mrna_strand>GTGCTGGCTGATGTTTTACCTGTGGAAACACTTATCTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAG............................................................................................................................................................................................................................................TGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCTGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAGATTTAATAACAGTGGGCATGCCCTTCTCCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTAATTTGGTAACTGTCATAATGGGTGCCAATTTTTATCGACGTGGAAGACACCTTGATTTCGTTAGAGATTTTGTGCCACCAAGCACTTCTGAGTTTGACAGTGTGTATCAACCATACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGAAGTTGCCTTCAATCCTGTGATGATATCAACTCTTGAGAATGGGAATATTGTTCGGGGTCTGACTGGAATTCCTTCTGAAGGACCAGTCTTACTTGTTGGTTACCACATGATGCTTGGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212246" ref_strand="+" ref_description="SGN-E212246 [cLEC-75-F9]">
      <seq>taagtgtgacgacaggtgttccagcaaggttggcagtggcaattcctggcagtggacactctttgcaacaagcagtagcagagttatttcgtggtgatgtagcattttcatcctacttatcttttgagcaagaaaatgatgaaaaaggtcgcaggtgctggctgatgttttacctgtggaaacacttatttggaggctgaagattctcaaatcagctgcatcttttgtcagttctcgcctccatgctgtcagatctcagactttggtactctcgagtggaaaagatcacttgatatcaagcccagaggaatccgagaagcttcacaagatgcttccaaactgtgaaatccggaaatttaataacagtgggcatgcccttctcctggtggatggaagttgccttcaatcctgtgatgatatcaactcttgagaatgggaatattgttcggggtctgactggaattccttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="7401" stop="4167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7099" g_stop="6993" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="122" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6992" i_stop="6705" i_length="288">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6704" g_stop="6551" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="276" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6550" i_stop="6315" i_length="236">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6314" g_stop="6206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="385" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6205" i_stop="4554" i_length="1652">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4553" g_stop="4467" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="472" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E212246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7099" e_stop="6993"/>
          <exon e_start="6704" e_stop="6551"/>
          <exon e_start="6314" e_stop="6206"/>
          <exon e_start="4553" e_stop="4467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCCAGCAAGGTTGGCAGTGGCAATTCCTGGCAGTGGACACTCTTTGCAACAAGCAGTAGCAGAGTTATTTCGTGGTGATGTAGCATTTTCATCCTACTTATCTGTAAGGTCCAAAAGTCTTAAACTCATAAGGTTAAATTGTGAAAGCTATCCCTCTTAATCTTAAAGCTTGGTCACCCTAAAAAGAATTTGTTGCATTTGGACATTTCATCAATATACTTTTTATGGCATCTTCTTAGCATAGATAAGATTCCCTTTCGTCACCATGTTTATCCATGTTGATATCTTCCTTTCCCACTCTAGCTTTGACACTTCAATAGTTTTGAAGACTTTAAACTTAGACAAACATTATTAGTTGATATTTTCAGTTGGAGTTTGTTCTTGTTGTCAGTTTGAGCAAGAAAATGATGAAAAAGGTCGCAGGTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAGGTAATTTTTCAGAGTTCCAGTGAGTCATCGGTTAAATTTAATGAAAGATTTTTAATGCCTACGCCTTCCGCATAGATAGTTGATTTTCTCTCTCTTGTCATCTTTACAAGAAGTTTGTTAATGTAAACTAGAATTGTTGTACTCTTTTCTTATTCCGAGCATTTTGAGCTATGTCCAATTCAGGTTAGCTTTTGCGACTGCCACTATGTGGGACTAAGAGTTATATTGCTATGCAGTGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTGGTAGGCTGTCTTCTTTTCAGACCCAATTCCTCTTTCTAACTTTCTAAATATTACTTTTGCTCTATACCATATTCATAACTGCTTATGCAAATGGTAATAGTTCTTTGTTTAGAATAATCTTTGTGAACAAACAACAAACAAAGCAGAGAACGTCTTGATTAGACTATGCATCAATTTAGATAGATTTTTTCAAGAATTCTGTGTCTGAAGTCCTGTTGAGGTTTATTCAATGACAAAAAAAGGAAAACAAGAAAAAGAAAGAGCATTTTAGTAAAAAATAATTGAGAACCCTTAGTGACTGAATAGGCTTGGGAATTAGTGAAGTAGGAGATGGGACCTCAAGGATCTGTTATGGGCATAGTGAGGTAAGATGATAGAACTTTCAGTTTGCTGGCAGTTGTGTGCTTTCTAGTTGCTGTGGCAAATGTAGGTCCTTGTCATTCATTTTATTTTTTGATCGTTGGGATATTCACTGCACTCTTACAACTTGAAATCATCCATGCAGTTTGTATACAAGCTATAGCTTTTGCTTTCATTTTCTATCATCTGCTGTAGATTATGATATCAGGTAAGCTACAGTCTTGATATAACACTTTTTTACTTTCTTTTTATCTTTGACAAGATTGAATATAAAAGTGCAACGGTTGCTTTCCAACAGAATTACTCTGTCAATATGATTCCATAACAAGCCACACAGTGGCATATTACATGCCTTACTTCCTAGAGAGAGATTTAGTACCCATGGCAGTGTATATATAATTCAATCGGTCACGTAGTCCTGCAATAGGCTACCTGTATGCTCTTAGTTCTGCATACGTAAAACTGGTTACTTCGGGTTCCTACAAAGATATTACTCCAGTTTTTATAGCATTCATACCGAAACTTATGCAAAAACATCTTTTCATCTTTTCTGGGGTATATGAGAAGTTGAAGTTTTTATGCAGGAAGCAGACTTTAATTTGGTAACTGTCATAATGGGTGCCAATTTTTATCGACGTGGAAGACACCTTGATTTCGTTAGAGATTTTGTGCCACCAAGCACTTCTGAGTTTGACAGTGTGTATCAACCATACAGGTATTTTGTCATGCTCTAGTTGGAACACACTGACTATTGAAGTGTGTGACCATCTCATCTAAAAGCTTAAGGTGTTAGAGAGAACACACTTGTATTACTTAATTATATTCTCAATACACCCACTCATAACGACCGATGCTGATATTTTATTCGAGGAATCTGTCTGCTCTAATGCCATATTGAAGTGTGTGACCATCTCATCTCAAAGCTTAAACTGTTAGAGAGAAACACACGTATTATTTAATTATATTCTCAAAACTAACCACTAACCAGTCGGTAGGGGATTGTAGAGATGCATAATTTGTTTCCTGGTTATTTACAATGTGCTCTATGTTCATAGATATGGTATCTAGTTTAGGAGGTTCCATTCTGACAATGTATTTTTTGGTGGTCTTGCTTCTCTATATAAGATGCTACCTTAGGACTAAATTAGGGTTAAGCTAATCAGAAGCTCTTATTGGTGTAGTGAATCAACTCTTCTGCTCTGCTATTTATGTGTACTTAGTTCATTTGATATAAACACAAATACTGCAAGTTTATTTGATCATTATTTCTTGTGTGACTGATTAAAACACAGGTGGATGGAAGTTGCCTTCAATCCTGTGATGATATCAACTCTTGAGAATGGGAATATTGTTCGGGGTCTGACTGGAATTCCTTCTGA</genome_strand>
        <mrna_strand>GTGTTCCAGCAAGGTTGGCAGTGGCAATTCCTGGCAGTGGACACTCTTTGCAACAAGCAGTAGCAGAGTTATTTCGTGGTGATGTAGCATTTTCATCCTACTTATCT................................................................................................................................................................................................................................................................................................TTTGAGCAAGAAAATGATGAAAAAGGTCGCAGGTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAG............................................................................................................................................................................................................................................TGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGAAGTTGCCTTCAATCCTGTGATGATATCAACTCTTGAGAATGGGAATATTGTTCGGGGTCTGACTGGAATTCCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315866" ref_strand="+" ref_description="SGN-E315866 [cTOA-26-A8]">
      <seq>tttttccgggtggtgcttcccatacgtgaaggatcttcaatatatggtgtctccacgttccagttacagatcgaacatcattctcagacctggtgtacctggttgaagcaactgttagatcagagcatcaccatgctccaagacgtcccatatatcttcttggagaatcttttgggggatgccttgcacttgctgttgctgctcgtaatcctcatattgatcttgcactaattttggcaaacccagccactcgtctacgtgaatctcagctggaaaatctgataacgttgtgcgaagtcattcctgagcaactccatccaagcatggttaaactgttaagtgtgacgacaggtgttccagcaaggttggcagtggcaattcctggcagtggacactctttgcaacaagcagtagcagagttatttcgtggtgatgtagcattttcatcctacttatctgtgctggctgatgttttacctgtggaaacacttatttggaggctgaagattctcaaatcagctgcatcttttgtcagttctcgcctccatgctgtcagatctcagactttggtactctcgagtggaaaagatcacttgatatcaagcccagaggaatccgagaagcttcacaagatgcttccaaactgtgaaatccggaaatttaataacagtgggcatgcccttctcctggaagcagactttaatttggtaactgtcataatgggtgcccatttttatcgacgtggaagacaccttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="9554" stop="4891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9254" g_stop="9168" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9167" i_stop="8543" i_length="625">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8542" g_stop="8384" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="246" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8383" i_stop="8296" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8295" g_stop="8191" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="351" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8190" i_stop="7100" i_length="1091">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7099" g_stop="6993" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="458" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6992" i_stop="6673" i_length="320">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6672" g_stop="6551" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="580" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6550" i_stop="6315" i_length="236">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6314" g_stop="6206" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="689" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6205" i_stop="5262" i_length="944">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.735" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5261" g_stop="5191" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="760" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E315866" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9254" e_stop="9168"/>
          <exon e_start="8542" e_stop="8384"/>
          <exon e_start="8295" e_stop="8191"/>
          <exon e_start="7099" e_stop="6993"/>
          <exon e_start="6672" e_stop="6551"/>
          <exon e_start="6314" e_stop="6206"/>
          <exon e_start="5261" e_stop="5191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAGGTCTCTCTCCTTGCTCATCTCCCTGTTGTGTTCTTAGGCAAATTGCTTGCTTGAATTTTAATATATGGAAAGTTGGAAACCCATCATCTGAATAAAAATATTTTGAAGAGTGGAAATGGTAGTGAGTGCTCTTGTCCCTAAATTTTGTCTCATTTTATTATTTCACATGGAAATTCAGAAGTGATGATCTGAGGATATATTACTACTATTATCATATAGTAAAGTGAAATTCTCTTTCTTAGTATAGCATAACAGGTACAGATCTTGTGTAATTTGTGAAAAAGATCCTTTTAAATTCAGCGAATCAGATAATTATGAATCACCTAACAAATGGTACAAGAATGCCAACTGAGCTAGCTGTGCACTTGGAAAAGCCATGCAGTTACTATTTTAACATTAACATGAAATGTCCTTGCGCTGATATATTGTGCTTTTTGCTTTTTCGCCTCTCTTTGTAATGAGTAATTTAACTTGTGTCCACTTTTAAGTTTGAACAATGTTACTAGACAAATCTGTCCTGTGTTCATATCAAGGAGTTTTTCTTTCTAAACTTGTGTGTGTGCTGCCTTTTATCTTTTGAAATGAAAGTAACAGTGGGATATACTTCCCCTTAACTCTTCTTCAGACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAGGTTCACAAAGCATGTCATCATAATTTTACGAGAGATATTTATAATGCTTGAATCATTTCATAGTTCTTATTGCAAAGATGTGTCTCAGCCACTCGTCTACGTGAATCTCAGCTGGAAAATCTGATAACGTTGTGCGAAGTCATTCCTGAGCAACTCCATCCAAGCATGGTTAAACTGTTAAGTGTGACGACAGGTTATTGTACCTTCATCCTCCGATTTATGAGTATAATAGTTTAAGTAGATGGAACTTTGTCTTGCCAAACTAGCATATTAATAACTGCTAACATCTCTTAGTTTTATACTTTGGTAATATTTGTTTGGAGTTTCCAGAAACTAAGTTTGTTTTGTGTTTTTATAAAAGCTGTTTGTTTTTTTGAATGATTTTTCCGGAAAAGGTTAACTTTTTAAAAATATTCTCACACTCATTTTTTCAGTTCTTCCAAAAAGAGTTGCTTTTCCTGCATCTCCTTGATTACCATGCTAGATGAAATGTGAAGTGTTTGGTTTGATAGATGAATGAGCCTACCTTCAGGAATATTTTTCTTCTGAATCTTTTATAAGAATCTTGTTGACTAGAATTGTAGGTGGAAACATGCTAATCATGCTGTCCAGTCACTAATTAAGATGTTTACTTCCCAATCTACTTCAGTATATATAATCACACATCTCATACTTCACATTGTATCTTTCTCCTAAAGACGTGTGTATCTGTTGAGACAAAACATACTTGTTCAAAGTGTGCACTGTGCAGCAACTTATCTGGGTCTTGTTTGTTTCTAACTTGCACCACAAACTTTTACTCAACTTGAACAGTTTGACTGCTGAGCCAGCAAAACCAATTACTTGAAGAACTTAATCCTGATATTGAACAAATCATTCAGCTCTATTATCTGTATGCATAATTCTTTAAAAAGCAATAGATCTAGCAAAACCCTCTTCTTGTTATTACCAAATGTATTTGAAACTTCTCTTGATAAAGTATATGCATATGTTCACACTTGATCTTTTAACACTTGCATGGATAAATTTACATCTTTTAGTTTTAGTTATCATGTTTATTGGTACTAAATCCCTCCTTAATATTGGGCTGTGAAGTGCTCAAAATGGAGTGACATGAATTGTTCTGATTGATATAGCTGACCAACTTGCTTGGGATTGACTTGTAGTTGTTGATTGGAACTAAATAACTTCAGTGGATACTTCTTGCTTAAATTGGTTTACTTAGTTCACTTTGTGGTTAACTTTTAGATGAAAATTGACAAGTGATTGAGTTAAATTGATTAGGTGTTCCAGCAAGGTTGGCAGTGGCAATTCCTGGCAGTGGACACTCTTTGCAACAAGCAGTAGCAGAGTTATTTCGTGGTGATGTAGCATTTTCATCCTACTTATCTGTAAGGTCCAAAAGTCTTAAACTCATAAGGTTAAATTGTGAAAGCTATCCCTCTTAATCTTAAAGCTTGGTCACCCTAAAAAGAATTTGTTGCATTTGGACATTTCATCAATATACTTTTTATGGCATCTTCTTAGCATAGATAAGATTCCCTTTCGTCACCATGTTTATCCATGTTGATATCTTCCTTTCCCACTCTAGCTTTGACACTTCAATAGTTTTGAAGACTTTAAACTTAGACAAACATTATTAGTTGATATTTTCAGTTGGAGTTTGTTCTTGTTGTCAGTTTGAGCAAGAAAATGATGAAAAAGGTCGCAGGTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAGGTAATTTTTCAGAGTTCCAGTGAGTCATCGGTTAAATTTAATGAAAGATTTTTAATGCCTACGCCTTCCGCATAGATAGTTGATTTTCTCTCTCTTGTCATCTTTACAAGAAGTTTGTTAATGTAAACTAGAATTGTTGTACTCTTTTCTTATTCCGAGCATTTTGAGCTATGTCCAATTCAGGTTAGCTTTTGCGACTGCCACTATGTGGGACTAAGAGTTATATTGCTATGCAGTGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTGGTAGGCTGTCTTCTTTTCAGACCCAATTCCTCTTTCTAACTTTCTAAATATTACTTTTGCTCTATACCATATTCATAACTGCTTATGCAAATGGTAATAGTTCTTTGTTTAGAATAATCTTTGTGAACAAACAACAAACAAAGCAGAGAACGTCTTGATTAGACTATGCATCAATTTAGATAGATTTTTTCAAGAATTCTGTGTCTGAAGTCCTGTTGAGGTTTATTCAATGACAAAAAAAGGAAAACAAGAAAAAGAAAGAGCATTTTAGTAAAAAATAATTGAGAACCCTTAGTGACTGAATAGGCTTGGGAATTAGTGAAGTAGGAGATGGGACCTCAAGGATCTGTTATGGGCATAGTGAGGTAAGATGATAGAACTTTCAGTTTGCTGGCAGTTGTGTGCTTTCTAGTTGCTGTGGCAAATGTAGGTCCTTGTCATTCATTTTATTTTTTGATCGTTGGGATATTCACTGCACTCTTACAACTTGAAATCATCCATGCAGTTTGTATACAAGCTATAGCTTTTGCTTTCATTTTCTATCATCTGCTGTAGATTATGATATCAGGTAAGCTACAGTCTTGATATAACACTTTTTTACTTTCTTTTTATCTTTGACAAGATTGAATATAAAAGTGCAACGGTTGCTTTCCAACAGAATTACTCTGTCAATATGATTCCATAACAAGCCACACAGTGGCATATTACATGCCTTACTTCCTAGAGAGAGATTTAGTACCCATGGCAGTGTATATATAATTCAATCGGTCACGTAGTCCTGCAATAGGCTACCTGTATGCTCTTAGTTCTGCATACGTAAAACTGGTTACTTCGGGTTCCTACAAAGATATTACTCCAGTTTTTATAGCATTCATACCGAAACTTATGCAAAAACATCTTTTCATCTTTTCTGGGGTATATGAGAAGTTGAAGTTTTTATGCAGGAAGCAGACTTTAATTTGGTAACTGTCATAATGGGTGCCAATTTTTATCGACGTGGAAGACACCTTGATTT</genome_strand>
        <mrna_strand>TTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAG........................................................................................CCACTCGTCTACGTGAATCTCAGCTGGAAAATCTGATAACGTTGTGCGAAGTCATTCCTGAGCAACTCCATCCAAGCATGGTTAAACTGTTAAGTGTGACGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCAGCAAGGTTGGCAGTGGCAATTCCTGGCAGTGGACACTCTTTGCAACAAGCAGTAGCAGAGTTATTTCGTGGTGATGTAGCATTTTCATCCTACTTATCT................................................................................................................................................................................................................................................................................................................................GTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAG............................................................................................................................................................................................................................................TGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAGACTTTAATTTGGTAACTGTCATAATGGGTGCCCATTTTTATCGACGTGGAAGACACCTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698357" ref_strand="+" ref_description="SGN-E698357 [FA06AB12]">
      <seq>tttgtccatggaggctatatccgcccccacttacaccgcggccggtgtctcgccgcttctccaaagtcggaactcatgccggcgcatcacctccgcaagattcaaaattgcatctacagctgcaactactgggagatcaactgcctctatcggccagcaaccgccaacagtaccgatgtccatagttgactcctctgagctagagcaaacaactactttgaatatgaaagatttcatgaaatggagcaaggatatgattgcgtccggatccgaaggtgggccaccacgctggttttcacccttggactgcgctgctcctctgaaagactcccctctattgctttacttaccagggattgatggtgttggacttggccttataaagcatcacaaaagacttggaaagatcttcaatatatggtgtctccacgttccagttacagatcgaacatcattctcagacctggtgtacctggttgaagcaactgttagatcagagcatcaccatgctccaagacgtcccatatatcttcttggagaatcttttgggggatgccttgcacttgctgttgctgctcgcaatcctcatattgatcttgcactaattttggcaaacccaaccactcgtctacgtgaatctcagctggaaaatctgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="10314" stop="7957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10014" g_stop="9662" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9661" i_stop="9431" i_length="231">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9430" g_stop="9379" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="405" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9378" i_stop="9224" i_length="155">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9223" g_stop="9168" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="461" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9167" i_stop="8543" i_length="625">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8542" g_stop="8384" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="620" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8383" i_stop="8296" i_length="88">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.891" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8295" g_stop="8257" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="659" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E698357" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10014" e_stop="9662"/>
          <exon e_start="9430" e_stop="9379"/>
          <exon e_start="9223" e_stop="9168"/>
          <exon e_start="8542" e_stop="8384"/>
          <exon e_start="8295" e_stop="8257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAGGTTAGGTGATTTCATTGGAACAACAACTTCACTCATTTTTCCGTTTACTATAGCAGAAAAAGCAATCTGTAATGGCAAAGTTTATAACTTATTGTTCGTGAACAAAGCCATAGTGCAAATATTCACACAACCACACGCTGGACTAATAACCTTCTTTGTATCAGCGTTTATGAACTGCTCATACATTGATAAGTTAATTAAACTAGGTCTTATTTACTCGGAACATTGCAGGGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAAGTAAGCTTGTTAATTGATCTTTTCGGCACAATGTCAGAATTTATATTTGATTTTCAGCACTACTATTGTCCTTAAGATGTTTGCGTTGTACTAGACTAATATATCTTGTCAAGTTTTGTTTTTGTTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAGGTCTCTCTCCTTGCTCATCTCCCTGTTGTGTTCTTAGGCAAATTGCTTGCTTGAATTTTAATATATGGAAAGTTGGAAACCCATCATCTGAATAAAAATATTTTGAAGAGTGGAAATGGTAGTGAGTGCTCTTGTCCCTAAATTTTGTCTCATTTTATTATTTCACATGGAAATTCAGAAGTGATGATCTGAGGATATATTACTACTATTATCATATAGTAAAGTGAAATTCTCTTTCTTAGTATAGCATAACAGGTACAGATCTTGTGTAATTTGTGAAAAAGATCCTTTTAAATTCAGCGAATCAGATAATTATGAATCACCTAACAAATGGTACAAGAATGCCAACTGAGCTAGCTGTGCACTTGGAAAAGCCATGCAGTTACTATTTTAACATTAACATGAAATGTCCTTGCGCTGATATATTGTGCTTTTTGCTTTTTCGCCTCTCTTTGTAATGAGTAATTTAACTTGTGTCCACTTTTAAGTTTGAACAATGTTACTAGACAAATCTGTCCTGTGTTCATATCAAGGAGTTTTTCTTTCTAAACTTGTGTGTGTGCTGCCTTTTATCTTTTGAAATGAAAGTAACAGTGGGATATACTTCCCCTTAACTCTTCTTCAGACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAGGTTCACAAAGCATGTCATCATAATTTTACGAGAGATATTTATAATGCTTGAATCATTTCATAGTTCTTATTGCAAAGATGTGTCTCAGCCACTCGTCTACGTGAATCTCAGCTGGAAAATCTGATAA</genome_strand>
        <mrna_strand>TTTGTCCATGGAGGCTATATCCGCCCCCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCGGCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAG.......................................................................................................................................................................................................................................GGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAA...........................................................................................................................................................GATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGCAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAA........................................................................................CCACTCGTCTACGTGAATCTCAGCTGGAAAATCTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326511" ref_strand="+" ref_description="SGN-E326511 [cTOC-17-M21]">
      <seq>tctattgcaaaagcgaaagacattttgatagatttttgtccatggaggctatatccgccggcacttacaccgcggccggtgtctcgccgcttctccaaagtcggaactcatgcctccgcatcacctccgcaagattcaaaattgcatctacagctgcaactactgggagatcaactgcctctatcggccagcaaccgccaacagtaccgatgtccatagttgactcctctgagctagagcaaacaactactttgaatatgaaagatttcatgaaatggagcaaggatatgattgcgtccggatccgaaggtgggccaccacgctggttttcacccttggactgcgctgctcctctgaaagactcccctctattgctttacttaccagggattgatggtgttggacttggccttataaagcatcacaaaagacttggaaagatcttcaatatatggtgtctccacgttccagttacagatcgaacatcattctcagacctggtgtacctggttgaagcaactgttagatcagagcatcaccatgctccaagacgtcccatatatcttcttggagaatcttttgggggatgccttgcacttgctgttgctgctcgtaatcctcatattgatcttgcactaattttggcaaacccagccactcgtctacgtgaatctcagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="10348" stop="7969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10048" g_stop="9662" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9661" i_stop="9431" i_length="231">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9430" g_stop="9379" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="439" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9378" i_stop="9224" i_length="155">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9223" g_stop="9168" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="495" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9167" i_stop="8543" i_length="625">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8542" g_stop="8384" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="654" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8383" i_stop="8296" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8295" g_stop="8269" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="681" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E326511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10048" e_stop="9662"/>
          <exon e_start="9430" e_stop="9379"/>
          <exon e_start="9223" e_stop="9168"/>
          <exon e_start="8542" e_stop="8384"/>
          <exon e_start="8295" e_stop="8269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTGCAAAAGCGAAAGACATTTTGATAGATTTTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAGGTTAGGTGATTTCATTGGAACAACAACTTCACTCATTTTTCCGTTTACTATAGCAGAAAAAGCAATCTGTAATGGCAAAGTTTATAACTTATTGTTCGTGAACAAAGCCATAGTGCAAATATTCACACAACCACACGCTGGACTAATAACCTTCTTTGTATCAGCGTTTATGAACTGCTCATACATTGATAAGTTAATTAAACTAGGTCTTATTTACTCGGAACATTGCAGGGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAAGTAAGCTTGTTAATTGATCTTTTCGGCACAATGTCAGAATTTATATTTGATTTTCAGCACTACTATTGTCCTTAAGATGTTTGCGTTGTACTAGACTAATATATCTTGTCAAGTTTTGTTTTTGTTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAGGTCTCTCTCCTTGCTCATCTCCCTGTTGTGTTCTTAGGCAAATTGCTTGCTTGAATTTTAATATATGGAAAGTTGGAAACCCATCATCTGAATAAAAATATTTTGAAGAGTGGAAATGGTAGTGAGTGCTCTTGTCCCTAAATTTTGTCTCATTTTATTATTTCACATGGAAATTCAGAAGTGATGATCTGAGGATATATTACTACTATTATCATATAGTAAAGTGAAATTCTCTTTCTTAGTATAGCATAACAGGTACAGATCTTGTGTAATTTGTGAAAAAGATCCTTTTAAATTCAGCGAATCAGATAATTATGAATCACCTAACAAATGGTACAAGAATGCCAACTGAGCTAGCTGTGCACTTGGAAAAGCCATGCAGTTACTATTTTAACATTAACATGAAATGTCCTTGCGCTGATATATTGTGCTTTTTGCTTTTTCGCCTCTCTTTGTAATGAGTAATTTAACTTGTGTCCACTTTTAAGTTTGAACAATGTTACTAGACAAATCTGTCCTGTGTTCATATCAAGGAGTTTTTCTTTCTAAACTTGTGTGTGTGCTGCCTTTTATCTTTTGAAATGAAAGTAACAGTGGGATATACTTCCCCTTAACTCTTCTTCAGACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAGGTTCACAAAGCATGTCATCATAATTTTACGAGAGATATTTATAATGCTTGAATCATTTCATAGTTCTTATTGCAAAGATGTGTCTCAGCCACTCGTCTACGTGAATCTCAGCTGG</genome_strand>
        <mrna_strand>TCTATTGCAAAAGCGAAAGACATTTTGATAGATTTTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAG.......................................................................................................................................................................................................................................GGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAA...........................................................................................................................................................GATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAG........................................................................................CCACTCGTCTACGTGAATCTCAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697753" ref_strand="+" ref_description="SGN-E697753 [FA04AB12]">
      <seq>ttgatagatttttgtccatggaggctatatccgccggcacttacaccgcggccggtgtctcgccgcttctccaaagtcggaactcatgcctccgcatcacctccgcaagattcaaaattgcatctacagctgcaactactgggagatcaactgcctctatcggccagcaaccgccaacagtaccgatgtccatagttgactcctctgagctagagcaaacaactactttgaatatgaaagatttcatgaaatggagcaaggatatgattgcgtccggatccgaaggtgggccaccacgctggttttcacccttggactgcgctgctcctctgaaagactcccctctattgctttacttaccagggattgatggtgttggacttggccttataaagcatcacaaaagacttggaaagatcttcaatatatggcgtctccacgttccagttacagatcgaacatcattctcagacctggtgtacctggttgaagcaactgttagatcaaagcatccccatgctccaagacgtcccatatatcttcttggagaatcttttgggggatgccttgcacttgctgttgctgctcgtaatcctcatattgatcttgcactaattttggcaaacccagccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="10324" stop="8084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10024" g_stop="9662" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9661" i_stop="9431" i_length="231">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9430" g_stop="9379" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="415" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9378" i_stop="9224" i_length="155">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9223" g_stop="9168" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="471" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9167" i_stop="8543" i_length="625">
            <donor d_prob="0.737" d_score="0.98"/>
            <acceptor a_prob="0.844" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8542" g_stop="8384" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="630" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8383" i_stop="8296" i_length="88">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8295" g_stop="8291" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="635" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E697753" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10024" e_stop="9662"/>
          <exon e_start="9430" e_stop="9379"/>
          <exon e_start="9223" e_stop="9168"/>
          <exon e_start="8542" e_stop="8384"/>
          <exon e_start="8295" e_stop="8291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAGATTTTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAGGTTAGGTGATTTCATTGGAACAACAACTTCACTCATTTTTCCGTTTACTATAGCAGAAAAAGCAATCTGTAATGGCAAAGTTTATAACTTATTGTTCGTGAACAAAGCCATAGTGCAAATATTCACACAACCACACGCTGGACTAATAACCTTCTTTGTATCAGCGTTTATGAACTGCTCATACATTGATAAGTTAATTAAACTAGGTCTTATTTACTCGGAACATTGCAGGGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAAGTAAGCTTGTTAATTGATCTTTTCGGCACAATGTCAGAATTTATATTTGATTTTCAGCACTACTATTGTCCTTAAGATGTTTGCGTTGTACTAGACTAATATATCTTGTCAAGTTTTGTTTTTGTTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAGGTCTCTCTCCTTGCTCATCTCCCTGTTGTGTTCTTAGGCAAATTGCTTGCTTGAATTTTAATATATGGAAAGTTGGAAACCCATCATCTGAATAAAAATATTTTGAAGAGTGGAAATGGTAGTGAGTGCTCTTGTCCCTAAATTTTGTCTCATTTTATTATTTCACATGGAAATTCAGAAGTGATGATCTGAGGATATATTACTACTATTATCATATAGTAAAGTGAAATTCTCTTTCTTAGTATAGCATAACAGGTACAGATCTTGTGTAATTTGTGAAAAAGATCCTTTTAAATTCAGCGAATCAGATAATTATGAATCACCTAACAAATGGTACAAGAATGCCAACTGAGCTAGCTGTGCACTTGGAAAAGCCATGCAGTTACTATTTTAACATTAACATGAAATGTCCTTGCGCTGATATATTGTGCTTTTTGCTTTTTCGCCTCTCTTTGTAATGAGTAATTTAACTTGTGTCCACTTTTAAGTTTGAACAATGTTACTAGACAAATCTGTCCTGTGTTCATATCAAGGAGTTTTTCTTTCTAAACTTGTGTGTGTGCTGCCTTTTATCTTTTGAAATGAAAGTAACAGTGGGATATACTTCCCCTTAACTCTTCTTCAGACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAGGTTCACAAAGCATGTCATCATAATTTTACGAGAGATATTTATAATGCTTGAATCATTTCATAGTTCTTATTGCAAAGATGTGTCTCAGCCACT</genome_strand>
        <mrna_strand>TTGATAGATTTTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAG.......................................................................................................................................................................................................................................GGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAA...........................................................................................................................................................GATCTTCAATATATGGCGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAAAGCATCCCCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAG........................................................................................CCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314920" ref_strand="+" ref_description="SGN-E314920 [cTOA-31-I12]">
      <seq>tttgatagatttttgtccatggaggctatatccgccggcacttacaccgcggccggtgtctcgccgcttctccaaagtcggaactcatgcctccgcatcacctccgcaagattcaaaattgcatctacagctgcaactactgggagatcaactgcctctatcggccagcaaccgccaacagtaccgatgtccatagttgactcctctgagctagagcaaacaactactttgaatatgaaagatttcatgaaatggagcaaggatatgattgcgtccggatccgaaggtgggccaccacgctggttttcacccttggactgcgctgctcctctgaaagactcccctctattgctttacttaccaggggattgatggtgttggacttggccttataaagcatcacaaaagacttggaaagatcttcaatatatggtggtctccacgttccagttacagatcgaacatcattctcanaactggtgtacctggttgaagcaactgttagatcagagcatcaccatggctccagacgtcccatatatcttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="10325" stop="8168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10025" g_stop="9662" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9661" i_stop="9431" i_length="231">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9430" g_stop="9379" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="417" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9378" i_stop="9224" i_length="155">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9223" g_stop="9168" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="474" r_length="57" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9167" i_stop="8543" i_length="625">
            <donor d_prob="0.737" d_score="0.94"/>
            <acceptor a_prob="0.844" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8542" g_stop="8468" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="549" r_length="75" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E314920" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10025" e_stop="9662"/>
          <exon e_start="9430" e_stop="9379"/>
          <exon e_start="9223" e_stop="9168"/>
          <exon e_start="8542" e_stop="8468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATAGATTTTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAGGTTAGGTGATTTCATTGGAACAACAACTTCACTCATTTTTCCGTTTACTATAGCAGAAAAAGCAATCTGTAATGGCAAAGTTTATAACTTATTGTTCGTGAACAAAGCCATAGTGCAAATATTCACACAACCACACGCTGGACTAATAACCTTCTTTGTATCAGCGTTTATGAACTGCTCATACATTGATAAGTTAATTAAACTAGGTCTTATTTACTCGGAACATTGCAG-GGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAAGTAAGCTTGTTAATTGATCTTTTCGGCACAATGTCAGAATTTATATTTGATTTTCAGCACTACTATTGTCCTTAAGATGTTTGCGTTGTACTAGACTAATATATCTTGTCAAGTTTTGTTTTTGTTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCTTCAATATATGGT-GTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAGGTCTCTCTCCTTGCTCATCTCCCTGTTGTGTTCTTAGGCAAATTGCTTGCTTGAATTTTAATATATGGAAAGTTGGAAACCCATCATCTGAATAAAAATATTTTGAAGAGTGGAAATGGTAGTGAGTGCTCTTGTCCCTAAATTTTGTCTCATTTTATTATTTCACATGGAAATTCAGAAGTGATGATCTGAGGATATATTACTACTATTATCATATAGTAAAGTGAAATTCTCTTTCTTAGTATAGCATAACAGGTACAGATCTTGTGTAATTTGTGAAAAAGATCCTTTTAAATTCAGCGAATCAGATAATTATGAATCACCTAACAAATGGTACAAGAATGCCAACTGAGCTAGCTGTGCACTTGGAAAAGCCATGCAGTTACTATTTTAACATTAACATGAAATGTCCTTGCGCTGATATATTGTGCTTTTTGCTTTTTCGCCTCTCTTTGTAATGAGTAATTTAACTTGTGTCCACTTTTAAGTTTGAACAATGTTACTAGACAAATCTGTCCTGTGTTCATATCAAGGAGTTTTTCTTTCTAAACTTGTGTGTGTGCTGCCTTTTATCTTTTGAAATGAAAGTAACAGTGGGATATACTTCCCCTTAACTCTTCTTCAGACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTG</genome_strand>
        <mrna_strand>TTTGATAGATTTTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAG.......................................................................................................................................................................................................................................GGGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAA...........................................................................................................................................................GATCTTCAATATATGGTGGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAN.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGGCTCCAGACGTCCCATATATCTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367203" ref_strand="+" ref_description="SGN-E367203 [cLPT-5-G7]">
      <seq>ggcacttacaccgcggccggtgtctcgccgcttctccaaagtcggaactcatgcctccgcatcacctccgccagattcaaaattgcatctacagctgcaactactgggagatcaactgcctctatcggccagcaaccgccaacagtaccgatgtccatagttgacttctctgagctagagaaaacaactactttgaatatgaaagatttcatgaaatggagcaaggatatgattgcgtccggatccgaaagtgggccaccacgctggttttcacccttggactgcgctgctcctctgaaagactcccctctattgctctacttaccagggattgatggtgttggacttggccttataaagcatcacaaaagacttggaaagatcttcaatatatggtgtctccacgttccagttacagatcgaacatcattctcagacctggtgtacctggttgaagcaactgttagatcagagcatcaccatgctccaagacgtcccatatatcttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="10289" stop="8168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9989" g_stop="9662" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9661" i_stop="9431" i_length="231">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9430" g_stop="9379" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="380" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9378" i_stop="9224" i_length="155">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9223" g_stop="9168" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="436" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9167" i_stop="8543" i_length="625">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8542" g_stop="8468" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="511" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E367203" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9989" e_stop="9662"/>
          <exon e_start="9430" e_stop="9379"/>
          <exon e_start="9223" e_stop="9168"/>
          <exon e_start="8542" e_stop="8468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAGGTTAGGTGATTTCATTGGAACAACAACTTCACTCATTTTTCCGTTTACTATAGCAGAAAAAGCAATCTGTAATGGCAAAGTTTATAACTTATTGTTCGTGAACAAAGCCATAGTGCAAATATTCACACAACCACACGCTGGACTAATAACCTTCTTTGTATCAGCGTTTATGAACTGCTCATACATTGATAAGTTAATTAAACTAGGTCTTATTTACTCGGAACATTGCAGGGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAAGTAAGCTTGTTAATTGATCTTTTCGGCACAATGTCAGAATTTATATTTGATTTTCAGCACTACTATTGTCCTTAAGATGTTTGCGTTGTACTAGACTAATATATCTTGTCAAGTTTTGTTTTTGTTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAGGTCTCTCTCCTTGCTCATCTCCCTGTTGTGTTCTTAGGCAAATTGCTTGCTTGAATTTTAATATATGGAAAGTTGGAAACCCATCATCTGAATAAAAATATTTTGAAGAGTGGAAATGGTAGTGAGTGCTCTTGTCCCTAAATTTTGTCTCATTTTATTATTTCACATGGAAATTCAGAAGTGATGATCTGAGGATATATTACTACTATTATCATATAGTAAAGTGAAATTCTCTTTCTTAGTATAGCATAACAGGTACAGATCTTGTGTAATTTGTGAAAAAGATCCTTTTAAATTCAGCGAATCAGATAATTATGAATCACCTAACAAATGGTACAAGAATGCCAACTGAGCTAGCTGTGCACTTGGAAAAGCCATGCAGTTACTATTTTAACATTAACATGAAATGTCCTTGCGCTGATATATTGTGCTTTTTGCTTTTTCGCCTCTCTTTGTAATGAGTAATTTAACTTGTGTCCACTTTTAAGTTTGAACAATGTTACTAGACAAATCTGTCCTGTGTTCATATCAAGGAGTTTTTCTTTCTAAACTTGTGTGTGTGCTGCCTTTTATCTTTTGAAATGAAAGTAACAGTGGGATATACTTCCCCTTAACTCTTCTTCAGACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTG</genome_strand>
        <mrna_strand>GGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCCAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTTCTCTGAGCTAGAGAAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAAGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTCTACTTACCAG.......................................................................................................................................................................................................................................GGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAA...........................................................................................................................................................GATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343619" ref_strand="+" ref_description="SGN-E343619 [cTOF-20-F7]">
      <seq>aaaagcgaaagaccattttgatagatttttgtccatggaggctatatccgccggcacttacaccgcggccggtgtctcgccgcttctccaaagtcggaactcatgcctccgcatcacctccgcaagattcaaaattgcatctacagctgcaactactgggagatcaactgcctctatcggccagcaaccgccaacagtaccgatgtccatagttgactcctctgagctagagcaaacaactactttgaatatgaaagatttcatgaaatggagcaaggatatgattgcgtccggatccgaaggtgggccaccacgctggttttcacccttggactgcgctgctcctctgaaagactcccctctattgctttacttaccagggattgatggtgttggacttggccttataaagcatcacaaaagacttggaaagtaagcttgttaattgatcttttcggcacaatgtcagaatttatatttgattttcagcactactattgtccttaagatgtttgcgttgtactagactaatatatcttgtcaagttttgtttttgtttttccgggtggtgcttcccatacgtgaaggatcttaatatatggtgtctccacgttccagttacagatcgaacatcattctcagacctggtgtacctggttgaagcactgttagatcagagcataccatgctccaagacgtccatatatcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="10340" stop="8169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10040" g_stop="9662" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9661" i_stop="9431" i_length="231">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9430" g_stop="9168" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="642" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9167" i_stop="8543" i_length="625">
            <donor d_prob="0.737" d_score="0.98"/>
            <acceptor a_prob="0.844" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8542" g_stop="8469" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="713" r_length="71" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E343619" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10040" e_stop="9662"/>
          <exon e_start="9430" e_stop="9168"/>
          <exon e_start="8542" e_stop="8469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCGAAAGA-CATTTTGATAGATTTTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAGGTTAGGTGATTTCATTGGAACAACAACTTCACTCATTTTTCCGTTTACTATAGCAGAAAAAGCAATCTGTAATGGCAAAGTTTATAACTTATTGTTCGTGAACAAAGCCATAGTGCAAATATTCACACAACCACACGCTGGACTAATAACCTTCTTTGTATCAGCGTTTATGAACTGCTCATACATTGATAAGTTAATTAAACTAGGTCTTATTTACTCGGAACATTGCAGGGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAAGTAAGCTTGTTAATTGATCTTTTCGGCACAATGTCAGAATTTATATTTGATTTTCAGCACTACTATTGTCCTTAAGATGTTTGCGTTGTACTAGACTAATATATCTTGTCAAGTTTTGTTTTTGTTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAGGTCTCTCTCCTTGCTCATCTCCCTGTTGTGTTCTTAGGCAAATTGCTTGCTTGAATTTTAATATATGGAAAGTTGGAAACCCATCATCTGAATAAAAATATTTTGAAGAGTGGAAATGGTAGTGAGTGCTCTTGTCCCTAAATTTTGTCTCATTTTATTATTTCACATGGAAATTCAGAAGTGATGATCTGAGGATATATTACTACTATTATCATATAGTAAAGTGAAATTCTCTTTCTTAGTATAGCATAACAGGTACAGATCTTGTGTAATTTGTGAAAAAGATCCTTTTAAATTCAGCGAATCAGATAATTATGAATCACCTAACAAATGGTACAAGAATGCCAACTGAGCTAGCTGTGCACTTGGAAAAGCCATGCAGTTACTATTTTAACATTAACATGAAATGTCCTTGCGCTGATATATTGTGCTTTTTGCTTTTTCGCCTCTCTTTGTAATGAGTAATTTAACTTGTGTCCACTTTTAAGTTTGAACAATGTTACTAGACAAATCTGTCCTGTGTTCATATCAAGGAGTTTTTCTTTCTAAACTTGTGTGTGTGCTGCCTTTTATCTTTTGAAATGAAAGTAACAGTGGGATATACTTCCCCTTAACTCTTCTTCAGACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTT</genome_strand>
        <mrna_strand>AAAAGCGAAAGACCATTTTGATAGATTTTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAG.......................................................................................................................................................................................................................................GGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAAGTAAGCTTGTTAATTGATCTTTTCGGCACAATGTCAGAATTTATATTTGATTTTCAGCACTACTATTGTCCTTAAGATGTTTGCGTTGTACTAGACTAATATATCTTGTCAAGTTTTGTTTTTGTTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCTT-AATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGGTGTACCTGGTTGAAGC-ACTGTTAGATCAGAGCAT-ACCATGCTCCAAGACGT-CCATATATCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359173" ref_strand="+" ref_description="SGN-E359173 [cLHT-11-O17]">
      <seq>atattcaccggcacttacatcgcggccggtgtctcgccgcttctccaaagtcggaactcatgcctccgcatcacctccgccagattcaaaattgcatctacagctgcaactactgggagatcaactgcctctatcggccagcaatcgccaacagtaccgatgtccatagttgactcctctgagctagagcaaacaagtactttgaatatgaaagatttcatgaaatggagcaaggatatgattgcgtccggatccgaaggtgggccaccacgctggttttcacccttggactgcgctgctcctctgaaagactcccctctattgctctacttaccagggattgatggtgttggacttggccttataaagcatcacaaaagacttggaaagtaagcttgttaattgatcttttcggcacaatgtcagaatttatatttgattttcagcactactattgtccttaagatgtttgcggtgtactagactaatatatcttgttaagttttgtttttgttttttcgggtgatgcttcccatacgtgaaggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="10298" stop="8919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9998" g_stop="9662" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9661" i_stop="9431" i_length="231">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9430" g_stop="9219" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="549" r_length="212" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E359173" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9998" e_stop="9662"/>
          <exon e_start="9430" e_stop="9219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAGGTTAGGTGATTTCATTGGAACAACAACTTCACTCATTTTTCCGTTTACTATAGCAGAAAAAGCAATCTGTAATGGCAAAGTTTATAACTTATTGTTCGTGAACAAAGCCATAGTGCAAATATTCACACAACCACACGCTGGACTAATAACCTTCTTTGTATCAGCGTTTATGAACTGCTCATACATTGATAAGTTAATTAAACTAGGTCTTATTTACTCGGAACATTGCAGGGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAAGTAAGCTTGTTAATTGATCTTTTCGGCACAATGTCAGAATTTATATTTGATTTTCAGCACTACTATTGTCCTTAAGATGTTTGCGTTGTACTAGACTAATATATCTTGTCAAGTTTTGTTTTTGTTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCT</genome_strand>
        <mrna_strand>ATATTCACCGGCACTTACATCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCCAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAATCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAAGTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTCTACTTACCAG.......................................................................................................................................................................................................................................GGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAAGTAAGCTTGTTAATTGATCTTTTCGGCACAATGTCAGAATTTATATTTGATTTTCAGCACTACTATTGTCCTTAAGATGTTTGCGGTGTACTAGACTAATATATCTTGTTAAGTTTTGTTTTTGTTTTTTCGGGTGATGCTTCCCATACGTGAAGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348569" ref_strand="+" ref_description="SGN-E348569 [cTOF-30-A19]">
      <seq>accaccagcagctgaaaagtctttgatcatatttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatgggttccttggatttctgtgatctcaatttgtggttcttatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaagcaagaatgcttggaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="14984" stop="18171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15284" g_stop="15534" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="350" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="459" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="531" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="537" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17871" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="709" r_length="172" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E348569" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15284" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCAGCAGCTGAAAAGTCTTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATAT-GGTTCCTT-GATTTCTGTGATCTCAA-TTGTGGTTC-TATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCT</genome_strand>
        <mrna_strand>ACCACCAGCAGCTGAAAAGTCTTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGGTTCCTTGGATTTCTGTGATCTCAATTTGTGGTTCTTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAAGCAAGAATGCTTGGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342716" ref_strand="+" ref_description="SGN-E342716 [cTOF-7-C11]">
      <seq>accaccagcagctgaaaagtctttgatcatatttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaaagttgactgggcaaagaaattgatggcgaaatatggttccttgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="14984" stop="18036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15284" g_stop="15534" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="350" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="459" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="531" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="537" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17736" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="570" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E342716" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15284" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCAGCAGCTGAAAAGTCTTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCT</genome_strand>
        <mrna_strand>ACCACCAGCAGCTGAAAAGTCTTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAAGTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277192" ref_strand="-" ref_description="SGN-E277192 [cLEL-3-J24](-)">
      <seq>agaattcggcacgagttgaatctgaatctgtatcataatttgttaagcaagcatggcggatggtgggatgaagttccttctagctactgccttagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15014" stop="17381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15301" g_stop="15534" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="333" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17081" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="412" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E277192" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277192" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15301" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACA</genome_strand>
        <mrna_strand>AGAATTCGGCACGAGTTGAATCTGAATCTGTATCATAATTTGTTAAGCAAGCATGGCGGATGGTGGGATGAAGTTCCTTCTAGCTACTGCCTTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328403" ref_strand="+" ref_description="SGN-E328403 [cTOC-21-F11]">
      <seq>tttgatcatatttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttggaacttccagcttattctggttgtccttgttagtcaaacagtttatgtaccagtttttaactttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15005" stop="18232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15305" g_stop="15534" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="329" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="438" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="510" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="516" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17932" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="744" r_length="228" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E328403" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15305" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTA</genome_strand>
        <mrna_strand>TTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAA-CTTCCAGCTTATTCTGGTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251103" ref_strand="+" ref_description="SGN-E251103 [cLEG-17-J1]">
      <seq>tttgatcatatttgaatctgaatctgtatctgtatcgggtaagcaagcatggcggattgtgccaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtagttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15005" stop="18079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15305" g_stop="15534" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="329" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="438" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="510" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="516" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17779" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="592" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E251103" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15305" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCC</genome_strand>
        <mrna_strand>TTTGATCATATTTGAATCTGAATCTGTATCTGTATCGGGTAAGCAAGCATGGCGGATTGTGCCAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTAGTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314188" ref_strand="+" ref_description="SGN-E314188 [cTOA-21-F10]">
      <seq>tttgatcatatttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15005" stop="18070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15305" g_stop="15534" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="329" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="438" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="510" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="516" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17770" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="583" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E314188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15305" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGA</genome_strand>
        <mrna_strand>TTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244379" ref_strand="+" ref_description="SGN-E244379 [cLEF-3-M14]">
      <seq>tttgatcatatttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctttacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaaggtttgactgggcaaagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15005" stop="17565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15305" g_stop="15534" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="329" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="438" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="511" r_length="73" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="517" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E244379" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15305" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAA-GTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAG</genome_strand>
        <mrna_strand>TTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTTTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGGTTTGACTGG........................................................................................................................................GCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200275" ref_strand="+" ref_description="SGN-E200275 [cLEC-12-D4]">
      <seq>tttgatcatatttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagcgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15005" stop="17534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15305" g_stop="15534" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="329" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="438" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17234" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="483" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E200275" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15305" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGAT</genome_strand>
        <mrna_strand>TTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGCGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203201" ref_strand="+" ref_description="SGN-E203201 [cLEB-3-L8]">
      <seq>gcacgagttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15014" stop="17565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15308" g_stop="15534" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="325" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="434" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="506" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="512" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E203201" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15308" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAG</genome_strand>
        <mrna_strand>GCAC-GAGTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277173" ref_strand="-" ref_description="SGN-E277173 [cLEL-3-F8](-)">
      <seq>gcacgagttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaccagtgttttatggggcaccagcggtcataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15014" stop="17381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15308" g_stop="15534" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="325" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17081" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="403" r_length="78" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E277173" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277173" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15308" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACA</genome_strand>
        <mrna_strand>GCAC-GAGTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAG-AAAAACCAGTGTTTTATGGGGCACCAGCGGTCATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275953" ref_strand="+" ref_description="SGN-E275953 [cLEN-12-H15]">
      <seq>tcatatttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaagatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15010" stop="17535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15310" g_stop="15534" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="324" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="433" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17235" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="479" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E275953" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15310" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATA</genome_strand>
        <mrna_strand>TCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAAGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348688" ref_strand="+" ref_description="SGN-E348688 [cTOF-30-B14]">
      <seq>atatttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggnacgctgggcttctctctcccattcctttgagtggnaagctaagaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactcaaatcctcctcttgacatactagctgataggccccccggagaagaagtttgactgggcaaagaaaatgatggcgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15012" stop="17565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15312" g_stop="15534" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="323" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="430" r_length="107" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="502" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="508" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E348688" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15312" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGG-ACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGG-CCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAG</genome_strand>
        <mrna_strand>ATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGNACGC...........................................................................................T-GGGCTTCTCTCTCCCATTCCTTTGAGTGGNAAGCTAAG-AAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCAAATCCT-CCTCTTGACATACTAGCTGATAGGCCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321536" ref_strand="+" ref_description="SGN-E321536 [cTOB-25-A1]">
      <seq>tttgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaaggtatgacatctttccctacataatatttagctttgataatgcttacagctacaaattgatggcgaaatatgggtccttgatttctgtgatctcaattgtgggtctatttgtctacctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15015" stop="18072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15315" g_stop="15534" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="319" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="428" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="500" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17455" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="558" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17456" i_stop="17703" i_length="248">
            <donor d_prob="0.202" d_score="0.94"/>
            <acceptor a_prob="0.756" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17772" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="627" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E321536" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15315" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17455"/>
          <exon e_start="17704" e_stop="17772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTT-CCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATT</genome_strand>
        <mrna_strand>TTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAGGTATGACATCTTTCCCTAC-ATAATATTTAGCTTTGATAATGCTTACAGCTAC........................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGGTCCTTGATTTCTGTGATCTCAATTGTGGGTCTATTTGTCTACCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244537" ref_strand="+" ref_description="SGN-E244537 [cLED-38-C10]">
      <seq>tgaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgttgctcatggacaatcgcagcctccgacgggccatttattggcgcacacaagaaggcggctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatgtacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15017" stop="17151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15317" g_stop="15534" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16851" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="257" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E244537" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15317" e_stop="15534"/>
          <exon e_start="16813" e_stop="16851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTC</genome_strand>
        <mrna_strand>TGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTGCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGGCGCACACAAGAAGGCGGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATGTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293126" ref_strand="+" ref_description="SGN-E293126 [cLET-12-H1]">
      <seq>gaatctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgcattagctctattatggttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccggtcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaagatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattggcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagcgttttatggggcaccagcggtcataacattccgtattcccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15018" stop="17395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15318" g_stop="15534" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="316" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17095" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="409" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E293126" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15318" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCAC</genome_strand>
        <mrna_strand>GAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGCATTAGCTCTATTATGGTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGGTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAAGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGGCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGCGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553999" ref_strand="+" ref_description="SGN-E553999 [cTSC-2-O16]">
      <seq>ctgaatctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttaacttttacacttgtaacaacatccaagcaggtaattagactgagatgttagtcttcggcagatcattaagctaagattttcactttttatgagaattttgttctggggttcttgaatacctaagtttattgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15022" stop="18362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15322" g_stop="15534" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="312" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="421" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="493" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="499" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="18062" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="859" r_length="360" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E553999" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15322" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="18062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGGGTTCCTTGAATACCTAAG-TTATTGTTTTTTT</genome_strand>
        <mrna_strand>CTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGGGGTTCTTGAATACCTAAGTTTATTGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733856" ref_strand="+" ref_description="SGN-E733856 [LB11AE07]">
      <seq>ctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttaacttttacacttgtaacaacatccaagcaggtaattagactgagatgttagtcttcggcagatcattaagctaagattttcactttttatgagaattttgttctggggtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15028" stop="46042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15328" g_stop="15534" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="306" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="415" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="487" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="493" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="18053" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="843" r_length="350" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E733856" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15328" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="18053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGGGTTCCTTGAATACCTAAGTTAT</genome_strand>
        <mrna_strand>CTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGGGGTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733815" ref_strand="+" ref_description="SGN-E733815 [LB11AB02]">
      <seq>ctgtatctgtatctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttaacttttacacttgtaacaacatccaagcaggtaattagactgagatgttagtcttcggcagatcattaagctaagattttcactttttatgagaattttgttctggggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15028" stop="18334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15328" g_stop="15534" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="306" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="415" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="487" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="493" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="18031" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="821" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="825" polyA_stop="840"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E733815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15328" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="18031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGG</genome_strand>
        <mrna_strand>CTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701913" ref_strand="+" ref_description="SGN-E701913 [FA17BB10]">
      <seq>atctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttaacttttacacttgtaacaacatccaagcaggtaattagactgagatgttagtcttcggcagatcattaagctaagattttcactttttatgagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15038" stop="18320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15338" g_stop="15534" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="296" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="405" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="477" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="483" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="18019" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="799" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="800" polyA_stop="815"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E701913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15338" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="18019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGA</genome_strand>
        <mrna_strand>ATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202536" ref_strand="+" ref_description="SGN-E202536 [cLEC-6-P7]">
      <seq>atctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcaggctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattgtcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagttagactgggcaaagaaattgatggcgaaatatggttccttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15038" stop="18033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15338" g_stop="15534" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="296" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="405" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="477" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="483" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17733" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="513" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E202536" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15338" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATT</genome_strand>
        <mrna_strand>ATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGGCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTGTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTAGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202579" ref_strand="+" ref_description="SGN-E202579 [cLEC-6-P18]">
      <seq>atctgttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctgcctcttgacatactagctgataggcccccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15038" stop="17545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15338" g_stop="15534" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="296" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="405" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17245" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="461" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E202579" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15338" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGA</genome_strand>
        <mrna_strand>ATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTGCCTCTTGACATACTAGCTGATAGGCCCCCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323443" ref_strand="+" ref_description="SGN-E323443 [cTOC-7-I2]">
      <seq>tgttaatcaagcatggctgattgtgcgaggaagttccttgtagctacgggattatctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactaactgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgagatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15041" stop="18045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15341" g_stop="15534" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="293" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="402" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="474" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="480" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17745" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="522" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E323443" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15341" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCA</genome_strand>
        <mrna_strand>TGTTAATCAAGCATGGCTGATTGTGCGAGGAAGTTCCTTGTAGCTACGGGATTATCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAACTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGAGATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288565" ref_strand="+" ref_description="SGN-E288565 [cLES-8-B9]">
      <seq>ttaagcaagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15043" stop="18044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15343" g_stop="15534" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="291" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="400" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="472" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="478" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17744" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="519" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E288565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15343" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTC</genome_strand>
        <mrna_strand>TTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325894" ref_strand="+" ref_description="SGN-E325894 [cTOC-12-G23]">
      <seq>aagcatggcggattgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15049" stop="18147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15349" g_stop="15534" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="285" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="394" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="466" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="472" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17847" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="616" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E325894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15349" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTA</genome_strand>
        <mrna_strand>AAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694117" ref_strand="+" ref_description="SGN-E694117 [LH_Ea03B11](-)">
      <seq>attcggcacgagggaggaagttcctcctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgcccttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaacgctgcgaaaaagaagcgctgaacacaaattagctggcttgcaacttggtcattatacaggcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttatcttttacacttgtaacaacatccaagcaggtaattagactgagatgttagtcttcggcagatcattaagctaagattttcactttttatgagaattttgttctgggtaccgtgaatacctaagttattgttttttgtggtttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15063" stop="18369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15353" g_stop="15534" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="280" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="389" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="461" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="467" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="18062" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="826" r_length="359" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="833" polyA_stop="848"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E694117" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15353" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="18062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGGGTTCCTTGAATACCTAAGTTATTGTTTTTTT</genome_strand>
        <mrna_strand>ATT-CGGCACGAGGGAGGAAGTTCCTCCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCCCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAACGCTGCGAAAAAGAAGCGCTGAACACAAATTAGCTGGCTTGCAACTTGGTCATTATACAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTATCTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGGGTACCGTGAATACCTAAGTTATTGTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268374" ref_strand="+" ref_description="SGN-E268374 [cLEI-13-G16]">
      <seq>gcggattgtgcgaggaagttccttctagctaccgtgttagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15056" stop="17559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15356" g_stop="15534" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="278" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="387" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17259" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="457" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E268374" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15356" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACT</genome_strand>
        <mrna_strand>GCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTGTTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279305" ref_strand="-" ref_description="SGN-E279305 [cLEL-4-J11](-)">
      <seq>gcacgaggcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15065" stop="18022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15358" g_stop="15534" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="276" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="385" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="457" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="463" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17722" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="482" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E279305" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279305" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15358" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATG</genome_strand>
        <mrna_strand>GCACGAGGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699337" ref_strand="+" ref_description="SGN-E699337 [FA09CG09]">
      <seq>cggtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcacgcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttaacttttacacttgtaacaacatccaagcaggtaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15063" stop="18262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15361" g_stop="15534" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="273" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="382" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="454" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="460" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17962" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="719" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E699337" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15361" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTA</genome_strand>
        <mrna_strand>CGGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCACGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286914" ref_strand="+" ref_description="SGN-E286914 [cLES-6-A3]">
      <seq>tgtgcgaggaagttccttctagctaccgtattagctctattatgtttctcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttaacttttacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15062" stop="18237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15362" g_stop="15534" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="272" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="381" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="453" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="459" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17937" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="693" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E286914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15362" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTT</genome_strand>
        <mrna_strand>TGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341485" ref_strand="+" ref_description="SGN-E341485 [cTOE-23-J19]">
      <seq>tgcgaggaagtttcttctagctaccgtattagctctattatgtgggtcatggacaatcgcagcctccgacgggccatttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15064" stop="18021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15364" g_stop="15534" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="270" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="379" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="451" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="457" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17721" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="475" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E341485" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15364" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATAT</genome_strand>
        <mrna_strand>TGCGAGGAAGTTTCTTCTAGCTACCGTATTAGCTCTATTATGTGGGTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251510" ref_strand="+" ref_description="SGN-E251510 [cLEG-9-G1]">
      <seq>atttattgtcgcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15139" stop="18165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15439" g_stop="15534" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="195" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="304" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="376" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="382" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17865" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="544" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E251510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15439" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTG</genome_strand>
        <mrna_strand>ATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257998" ref_strand="+" ref_description="SGN-E257998 [cLEG-48-B8]">
      <seq>atttattgtctcacacaagaaggccgctcttactcgactcaaatccgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataagcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtgggtctatttgtctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15139" stop="18067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15439" g_stop="15534" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="195" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="304" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="376" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="382" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="17767" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="446" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E257998" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15439" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="17767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACC</genome_strand>
        <mrna_strand>ATTTATTGTCTCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAAGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGGTCTATTTGTCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353800" ref_strand="+" ref_description="SGN-E353800 [cTOS-10-A2]">
      <seq>cgacatcgaacggatttccatctccatcgacatctacaacgaaggatctgcgacggcatacgatgtgagtctttatgatgataactggtctcaagatgtatttgaaattgtcgctggtaacacatccatgtcgtgggaaaggctggacgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttaacttttacacttgtaacacatccaagcaggtaattagactgagaatgtagtcttcggcagatcattaagctaagattttcactttttatgagaaatttgttctggggttccttgataccctaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15184" stop="18353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15484" g_stop="15534" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16813" g_stop="16911" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="150" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="259" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="331" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="337" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17704" g_stop="18049" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="683" r_length="346" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E353800" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15484" e_stop="15534"/>
          <exon e_start="16813" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="18049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGCGTATGCTTTTCTTACTCAGATCTCAACTTCCTTGTTTTCACTTTCCCTCCCTAAATCTGGATGTCGTTTTAATTACTTTAATATTAGGACCTGCAGTAATTAGCATTAATTGTTTGACGCCGTCTTTATCCTACCGGAGTATACTTTGCTCCTCAATTGATAAGGAAATCAAACTAATAAATCTCACTCTTCATTTTGTCCCATTTCCAAACAGCTTCTCTTGATCTGATTGTTTTATTTTGTTAATAAATGTAATTGTTTGAATTATCTGAAACATCCTTGGAAAAAGAGACAACAAATTGCAAAGTAATCTTGACAGGAATCCCTTTTTGACTTCACCTCCCATCCTCACTAATTTATCATTATATTTGTACATTCTATGTTTTGAAACAAATAATATTCAAAACCAAAAAAAGAAAAAACTTTATTTTCTTCTGAATGTGTTTATACATATAATTTTTGTAAAAAATGTTTCTGAAGGACAGTATCGTTTTAAAAGTCATAATGAGTAGTCTATAATTTTTTGATCTCATTGTTTTCTAAGACTAATTCCTGTATAGACAATGTTTAGAAAAAGTTATCCTATTTTTCTGAGTTTAATATCAATGGAATCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCT-GGGTTCCTTGAATACCTAAG</genome_strand>
        <mrna_strand>CGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAAC-ACATCCAAGCAGGTAATTAGACTGAGAATGTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAAATTTGTTCTGGGGTTCCTTGATACCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375948" ref_strand="+" ref_description="SGN-E375948 [TUS-40-E4]">
      <seq>tcgtgtattcaaactctccagccagcacctgtttcagataacactatgcaccttagtctttctccaccagatcaatctgtcaggatttagatacaaatggatgatattgctgaatgtgatcggagagaaaagggcaccttttccctttgattggtaagaggtggataaggaattgccaagtaaagggatttggaaaccctcctagtctgctgtttgagtcccttgtgcttgatgagaaagatttcctacaagaaattaagaaaatacagtcaccttgctgaaatttggttgttaagtcttgggggtaaaataataaccactagtgatatttgttgaaaatagtattttccttctaaataataatgtgttccttactttcttttcatgtcatcagcaatctatctctcggtacatttcaaaatgattcaaaccatgtgctcatttttgaaccatgcgtggggtagaataattcgttggcttcaatgtggtgaacagttaggaatctaagaatctcattagctaattagagaatgactttgcgagattcttttaccttttgttgtgcaaccaacacgctctaaagatttcagccagttgcttatgcattatcatttactgatggatgataatgatgtgactttgacatgaaaaagctctttttgttcaggacggcatacgatgtgagtctttatgatgataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15846" stop="17147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16146" g_stop="16847" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E375948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16146" e_stop="16847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACT</genome_strand>
        <mrna_strand>TCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319029" ref_strand="+" ref_description="SGN-E319029 [cTOB-14-B21]">
      <seq>tcgtgtattcaaactctccagccagcacctgtttcagataacactatgcaccttagtctttctccaccagatcaatctgtcaggatttagatacaaatggatgatattgctgaatgtgatcggagagaaaagggcaccttttccctttgattggtaagaggtggataaggaattgccaagtaaagggatttggaaaccctcctagtctgctgtttgagtcccttgtgcttgatgagaaagatttcctacaagaaattaagaaaatacagtcaccttgctgaaatttggttgttaagtcttgggggtaaaataataaccactagtgatatttgttgaaaatagtattttccttctaaataataatgtgttccttactttcttttcatgtcatcagcaatctatctctcggtacatttcaaaatgattcaaaccatgtgctcatttttgaaccatgcgtggggtagaataattcgttggcttcaatgtggtgaacagttaggaatctaagaatctcattagctaattagagaatgactttgcgagattcttttaccttttgttgtgcaaccaacacgctctaaagatttcaaccagttgcttatgcattatcatttactgatggatgataatgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15846" stop="17081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16146" g_stop="16781" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E319029" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16146" e_stop="16781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTG</genome_strand>
        <mrna_strand>TCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAACCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318987" ref_strand="+" ref_description="SGN-E318987 [cTOB-14-B22]">
      <seq>tcgtgtattcaaactctccagccagcacctgtttcagataacactatgcaccttagtctttctccaccagatcaatctgtcaggatttagatacaaatggatgatattgctgaatgtgatcggagagaaaagggcaccttttccctttgattggtaagaggtggataaggaattgccaagtaaagggatttggaaaccctcctagtctgctgtttgagtcccttgtgcttgatgagaaagatttcctacaagaaattaagaaaatacagtcaccttgctgaaatttggttgttaagtcttgggggtaaaataataaccactagtgatatttgctgaaaatagtattttccttctaaataataatgtgttccttactttcttttcatgtcatcagcaatctatctctcggtacatttcaaaatgattcaaaccatgtgctcatttttgaaccatgcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="15846" stop="16903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16146" g_stop="16603" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E318987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16146" e_stop="16603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTG</genome_strand>
        <mrna_strand>TCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGCTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203202" ref_strand="+" ref_description="SGN-E203202 [cLEB-3-L8](-)">
      <seq>acgctggggcttctctctcccattcctttgagttggaagctaagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaaggctgctctacaggaggcattctcaactccaatcctccctcttgacatactagctgataggcccccggagaagaagtttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttaacttttacacttgtaacaacatccaagcaggtaattagactgagatgttagtcttcggcagatcattaagataagattttnactttccctccgaaacaaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="16703" stop="18311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16908" g_stop="16911" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17003" g_stop="17111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="113" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="185" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="191" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17704" g_stop="18011" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="499" r_length="308" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E203202" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16908" e_stop="16911"/>
          <exon e_start="17003" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="18011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGTGAGTCCTCTTAAAATTGGTGGCATCTGACTATTTAACTTCTTTATCTTGTCTCTTTTTCATGTTCGTTTATTTGTTTGTCTGATGTCAGTGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTT</genome_strand>
        <mrna_strand>ACGC...........................................................................................TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGATAAGATTTTNACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E695332" ref_strand="+" ref_description="SGN-E695332 [LH_Ea06E02](-)">
      <seq>aagaaaaaaacagtgttttatggggcaccagcggtcataacattccgtattcccactaagggtgctttacaggaggcattctcaactccaatcctccctcttggcatactagctgataggcccccggagaagaagtttgattgggcaaagaaattgatggcgaaatatggttccttgatttctgtaaaaaaaattgtggttctatttgtttacctgattgcgagcccttcaaagtccaacgctgcgaaaaagaagcgctgaacacaaattagctggcttgcaacttggtcattatacaggcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttatcttttacacttgtaacaacatccaagcaggtaattaggaggagatgttagttttcggcagatcattaagctacgattttctctttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="16740" stop="18315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17040" g_stop="17111" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17190" g_stop="17261" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="144" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.605" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17398" g_stop="17403" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="150" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17704" g_stop="18015" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="462" r_length="312" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E695332" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17040" e_stop="17111"/>
          <exon e_start="17190" e_stop="17261"/>
          <exon e_start="17398" e_stop="17403"/>
          <exon e_start="17704" e_stop="18015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAGGTTTGACATTCTTGCTTATATGCTTCTACTTGGTATGCTTGATATGGATGGTGTTTATCAATAATATTCTCATTTTAGGAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGGGTAAGCGCTCAAATACTAGTAGCTGCAGCTGCACAAACTACAGAACACATTTTTTTTTGCTAATTATAGTTTACTAAGAGATGAATTCCCTTTTTTTGCATGGACTGTCCAAATTCGTGGTGAATATTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTAT</genome_strand>
        <mrna_strand>AAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGGTGCTTTACAG..............................................................................GAGGCATTCTCAACTCCAATCCTCCCTCTTGGCATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGATTGG........................................................................................................................................GCAAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTAAAAAAAATTGTGGTTCTATTTGTTTACCTGATTGCGAGCCCTTCAAAGTCCAACGCTGCGAAAAAGAAGCGCTGAACACAAATTAGCTGGCTTGCAACTTGGTCATTATACAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTATCTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGGAGGAGATGTTAGTTTTCGGCAGATCATTAAGCTACGATTTTCTCTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375947" ref_strand="+" ref_description="SGN-E375947 [TUS-40-E4](-)">
      <seq>ttcatcacaggcaaaggtatgacatctttcctacaataatatttagctttgataatgcttacagctacgtaagtttacatagaaataaccccttactaggtcatcaatcaatatctgatttaggaaaaaaaacacatttgaattcagaaagaatccgggctgcatggatggaaaaattcatcttataaacatctccctaagttcgacattttaagttgaatctataatttttgcatcgtacatgtcccatgcttggtacttaattgaattataaaattatgagaattaggatttcatttatcacaccttgtttacagaaattgatggcgaaatatggttccttgatttctgtgatttcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaaaaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttggaaccttccagcttattttgtttgtccttgttagtcaaacagttttgtaccagtttttaacttttacacttgtaacaacatccaagcaggtaattagactgagatgttagttttcggcagatcattaagctaagattttcactttttatgagaatttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="17088" stop="46044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17388" g_stop="18024" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18025" i_stop="18680" i_length="656">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18681" g_stop="18700" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="657" r_length="20" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E375947" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17388" e_stop="18024"/>
          <exon e_start="18681" e_stop="18700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGG-AAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGGGTTCCTTGAATACCTAAGTTATTGTTTTTTTGTAGTTTTCTTGCTTCTTGAGCATCAACAATTTCATTTTCTTAATACTTTCGATTGTGCCATTTCATTATTAAGAGGTGCGAAATATTTTGCTGGTCGGATGATGGATGACAAAGATGGCCAGGTCTAAAAGTAAGGTTGTAATAATTTTAGGATGCTTGTGTAATATTCTAGTTAACCAGCACTTGACCCTTGTGCACGGGTATACGGTATTACGTCTTCACGCTGATGGGTAAGTAGGTTTACATCCGTAAGGCATAGTACCTGATTTTTTTTAATGCCTTAAAAACATGTATTTTAGAGAACTCCAAGGCACTCTAAAATTGTTCAATATGCTTCTATATGAAACGATAAGAATCATTCTTGTATGTGCTCAACGGTTGCCAAGATTGTTGACATAAAGAAAAAGTTCCGACGGTAGAGTAGAGAAACATATTTCCGTTACTCCTTCCTTACAAATGACAAAATTCACTGTCTTGCGAACCTTTCCACCCTTGAATTACAAGAGTGTCCATGTTGTTTGTAAGGCGAACGAGGGAACAGAATTAATCAATTACATGTATATGCATAAAAACAGACAATAATCAAGTATGATGGCCCTCCACCACAGGAATCAAAGACAATTATAGTAAAGAAAAA</genome_strand>
        <mrna_strand>TTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAAACACATTTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTTTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATTTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATTTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAAAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTTTGTTTGTCCTTGTTAGTCAAACAGTTT-TGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTTTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355306" ref_strand="+" ref_description="SGN-E355306 [cTOS-18-M5]">
      <seq>tttgactgggcaaagaaattgatggcgaaatatggttccttgatttctgtgatctcaattgtggttctatttgtctacctgattgcgagcccttcaaagtccaatgctgcgaaaaagaagcgctgaatacagattagctggcttgcaacttggtcattattcaggcaagaatgcttggaaccttccagcttattctgtttgtccttgttagtcaaacagtttatgtaccagtttttaacttttacacttgtaacaacatccaagcaggtaattagactgagatgttagtcttcggcagatcattaagctaagattttcactttttatgagaattttgttctgggttccttgaatacctaagttattgtttttttgtagttttcttgcttcttgagcaaaannnnnnaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="17400" stop="46044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17400" g_stop="17403" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="15" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17704" g_stop="18088" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="400" r_length="385" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18089" i_stop="18671" i_length="583">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.136" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18672" g_stop="18700" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="429" r_length="29" r_score="0.517"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E355306" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17400" e_stop="17403"/>
          <exon e_start="17704" e_stop="18088"/>
          <exon e_start="18672" e_stop="18700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGGGTTCCTTGAATACCTAAGTTATTGTTTTTTTGTAGTTTTCTTGCTTCTTGAGCATCAACAATTTCATTTTCTTAATACTTTCGATTGTGCCATTTCATTATTAAGAGGTGCGAAATATTTTGCTGGTCGGATGATGGATGACAAAGATGGCCAGGTCTAAAAGTAAGGTTGTAATAATTTTAGGATGCTTGTGTAATATTCTAGTTAACCAGCACTTGACCCTTGTGCACGGGTATACGGTATTACGTCTTCACGCTGATGGGTAAGTAGGTTTACATCCGTAAGGCATAGTACCTGATTTTTTTTAATGCCTTAAAAACATGTATTTTAGAGAACTCCAAGGCACTCTAAAATTGTTCAATATGCTTCTATATGAAACGATAAGAATCATTCTTGTATGTGCTCAACGGTTGCCAAGATTGTTGACATAAAGAAAAAGTTCCGACGGTAGAGTAGAGAAACATATTTCCGTTACTCCTTCCTTACAAATGACAAAATTCACTGTCTTGCGAACCTTTCCACCCTTGAATTACAAGAGTGTCCATGTTGTTTGTAAGGCGAACGAGGGAACAGAATTAATCAATTACATGTATATGCATAAAAACAGACAATAATCAAGTATGATGGCCCTCCACCACAGGAATCAAAGACAATTATAGTAAAGAAAAA</genome_strand>
        <mrna_strand>AAAG............................................................................................................................................................................................................................................................................................................AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGGGTTCCTTGAATACCTAAGTTATTGTTTTTTTGTAGTTTTCTTGCTTCTTGAGCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NNNNNNAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552745" ref_strand="+" ref_description="SGN-E552745 [cTSB-4-O15]">
      <seq>gatggagataaccgaggcgtatggagtaatggcagatggaaacaacaataacagtaacagtatgatgaatcctccaactcccaccaaaagaagtcgcagccagaggcgtaggcgttcttccctcaacttcacttccctggattttctctcacacgtgccaccacctcttcctcctttgccccccgcacgtgtacttgaaccaacagggttcagatttctcttcgacaagcagctccagaacagtgatgtcagctccctgagaagaatagttgtgcccaagaaagcagctgagcgatatcttccagctcttgagatcaaagaagggtttcccatcacaatggatgacatggatggtatccatgtttggagtttcagatacaggtactggccaaataacagcagccgaatgtatgtgcttgaaaatactggtgactttgtccaaacacatgaattgcgccaaggagactactttgcactccactacaatgatcaaaagcagatttatggtattgaagcgaggaaagctggaagtggagcggtattccgaggttatgaagcggaggacgtgattttaactgattatgcacaggctgcagatgatgggaatggagcgcttatgaatgaagcagaaatggatatgtccagcttttacttccctgcaatggacaacgagatgggcatgtccttcatttatgataccagcttctggaacgagcctgccttcgactttgtagggggtcctatgacctattactcaactaatgtatatccaatgccaagctttgggtccattgaagacagcttcagtgtggatgatttctactgaagacagagtcaaatacagacatactactaatcccatgcagccttgtaatctaatgcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="22771" stop="25221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23071" g_stop="23260" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23261" i_stop="23875" i_length="615">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.590" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23876" g_stop="23965" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="280" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23966" i_stop="24035" i_length="70">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24036" g_stop="24136" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="381" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24137" i_stop="24238" i_length="102">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24239" g_stop="24285" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="428" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24286" i_stop="24371" i_length="86">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24372" g_stop="24448" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="505" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24449" i_stop="24539" i_length="91">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24540" g_stop="24921" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="887" r_length="382" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E552745" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23071" e_stop="23260"/>
          <exon e_start="23876" e_stop="23965"/>
          <exon e_start="24036" e_stop="24136"/>
          <exon e_start="24239" e_stop="24285"/>
          <exon e_start="24372" e_stop="24448"/>
          <exon e_start="24540" e_stop="24921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGATAACCGAGGCGTATGGAGTAATGGCAGATGGAAACAACAATAACAGTAACAGTATGATGAATCCTCCAACTCCCACCAAAAGAAGTCGCAGCCAGAGGCGTAGGCGTTCTTCCCTCAACTTCACTTCCCTGGATTTTCTCTCACACGTGCCACCACCTCTTCCTCCTTTGCCCCCCGCACGTGTATGTCCCCCTCTTTTCTTTTTGATCCCTTGCAATTGAATTTTTGGGGGAAGGAAGACTAGATAGATACAAGTAGTGTTGTGTTTAAAATAAAAAGTGTTTACTTGCTACTCATGTTAAATTGCTTTGTCAGTTGTGCCATTATAGTGTAAACTTGAATAGCATGAGTGAAGTCATGATCTAAGCTCAGATTTGTAGTAATAGTTGTGTTGTTCCTGATGGATTGGGGTTAGGGTCATTTGATTATAAGATTTTTCCTTACTACTGTGAAGGTCATTCAAGTAATTAGTTTGAGGAATTTGGAAATACTTGGATTCCCATCAATGAATATGAAATACCAGGGCATGCTAATCACCCAGTCCACAAAACCTATATGCAAGCTGATCCAATAATTACATCGATATAGGTATGAAATGATGCAAACAATGAAATTCTATTGAACATTAATTTGGTGAAAACTTTATTCATCTATCCTTGGCAATGTAGTTCATTCAATACCCTGTAAACAAACAACATTATACATTTTCCTCTGGACCATCTCTCTTATAAGAAAGAAACAGGTAGGTTGTGTTTGCGATCATCCATTCAGCTAAACACATTAATAATTTGCTTCAGGTACTTGAACCAACAGGGTTCAGATTTCTCTTCGACAAGCAGCTCCAGAACAGTGATGTCAGCTCCCTGAGAAGAATAGTTGTGCCCAAGGTGATGGTCGTGTATGCATTTGTTTTCATTTGGAGTATACATTGAAGTAATAATTCTTCTAACAATTCAGAAAGCAGCTGAGCGATATCTTCCAGCTCTTGAGATCAAAGAAGGGTTTCCCATCACAATGGATGACATGGATGGTATCCATGTTTGGAGTTTCAGATACAGGTTGGAGGTCCCCTTTTATTTTTCCAAATTTACTTGACGGAATTCAAGTGTCAAGACCAGAACATATATTTGATGTTTTATTATTATTATTATTATGTATAGGTACTGGCCAAATAACAGCAGCCGAATGTATGTGCTTGAAAATACTGGTGAGATCTCCACAGCTAGCCCTTCCTTTCCAATTAAGTTTTACTTGTGCAAAAGCTAAAAAGTGTTGGATTGGATTGATGGTCAGGTGACTTTGTCCAAACACATGAATTGCGCCAAGGAGACTACTTTGCACTCCACTACAATGATCAAAAGCAGATTTATGTAATTAAGCTTGCTCTTTGATTCTTATGTTTACTTTGAAGTAATTTGTCAAAGGCTGGCTGGCTCTATATGGATATGTTTTTGTGTATAGGGTATTGAAGCGAGGAAAGCTGGAAGTGGAGCGGTATTCCGAGGTTATGAAGCGGAGGACGTGATTTTAACTGATTATGCACAGGCTGCAGATGATGGGAATGGAGCGCTTATGAATGAAGCAGAAATGGATATGTCCAGCTTTTACTTCCCTGCAATGGACAACGAGATGGGCATGTCCTTCATTTATGATACCAGCTTCTGGAACGAGCCTGCCTTCGACTTTGTATGGGGTCCTATGACCTATTACTCAACTAATGTATATCCAATGCCAAGCTTTGGGTCCATTGAAGACAGCTTCAGTGTGGATGATTTCTACTGAAGACAGAGTCCAATACAGACATACTACTAATCCCATGCAGCCTTGTAATCTAATGCATACT</genome_strand>
        <mrna_strand>GATGGAGATAACCGAGGCGTATGGAGTAATGGCAGATGGAAACAACAATAACAGTAACAGTATGATGAATCCTCCAACTCCCACCAAAAGAAGTCGCAGCCAGAGGCGTAGGCGTTCTTCCCTCAACTTCACTTCCCTGGATTTTCTCTCACACGTGCCACCACCTCTTCCTCCTTTGCCCCCCGCACGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGAACCAACAGGGTTCAGATTTCTCTTCGACAAGCAGCTCCAGAACAGTGATGTCAGCTCCCTGAGAAGAATAGTTGTGCCCAAG......................................................................AAAGCAGCTGAGCGATATCTTCCAGCTCTTGAGATCAAAGAAGGGTTTCCCATCACAATGGATGACATGGATGGTATCCATGTTTGGAGTTTCAGATACAG......................................................................................................GTACTGGCCAAATAACAGCAGCCGAATGTATGTGCTTGAAAATACTG......................................................................................GTGACTTTGTCCAAACACATGAATTGCGCCAAGGAGACTACTTTGCACTCCACTACAATGATCAAAAGCAGATTTAT...........................................................................................GGTATTGAAGCGAGGAAAGCTGGAAGTGGAGCGGTATTCCGAGGTTATGAAGCGGAGGACGTGATTTTAACTGATTATGCACAGGCTGCAGATGATGGGAATGGAGCGCTTATGAATGAAGCAGAAATGGATATGTCCAGCTTTTACTTCCCTGCAATGGACAACGAGATGGGCATGTCCTTCATTTATGATACCAGCTTCTGGAACGAGCCTGCCTTCGACTTTGTAGGGGGTCCTATGACCTATTACTCAACTAATGTATATCCAATGCCAAGCTTTGGGTCCATTGAAGACAGCTTCAGTGTGGATGATTTCTACTGAAGACAGAGTCAAATACAGACATACTACTAATCCCATGCAGCCTTGTAATCTAATGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696926" ref_strand="+" ref_description="SGN-E696926 [LH_Ea10G12](-)">
      <seq>agtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaggttgcgaaggtgtaggattgagaagaaattaattcttccccaagtttaaaagtagacttctccagattaagcaataaacatagattgcagatgttcctttagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtcttttttgttagaacagatacaaaatcaatttgatgctaagcttttcccattcgagatgggaataacaagtatagtggaggctgctatatgttttgctttgttcattttaactgtctgatgtaccctttaaagggctaaaaaagctttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26688" stop="25111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26388" g_stop="26186" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="328" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25813" g_stop="25386" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="752" r_length="424" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E696926" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26388" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAAGTATAGTGGAGGCTGCTATATGATTTGCTTTGTTCATTTTTAACTGTCTGATGTACCAAAAAATGTTCTAAAAAAACTTTCC</genome_strand>
        <mrna_strand>AGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAAGAAATTAATTCTTCCCCAAGTTTAAAAGTAGACTTCTCCAGATTAAGCAATAAACATAGATTGCAGATGTTCCTTTAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTC-TTTTTTGTTAGAACAGAT-ACAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAAC-AAGTATAGTGGAGGCTGCTATATGTTTTGCTTTGTTCA-TTTTAACTGTCTGATGTACCCTTTAAAGGGCTAAAAAAGCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230587" ref_strand="+" ref_description="SGN-E230587 [cLEL-35-B18](-)">
      <seq>ttttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtctttttttgttagaacagataaaaaaatcaatttgatgctaagcttttcccattcgagatgggaataacaaagtatagtggaggctgctatatgatttgctttgttcatttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="25909" stop="25125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25609" g_stop="25425" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="186" polyA_stop="200"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E230587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25609" e_stop="25425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAAGTATAGTGGAGGCTGCTATATGATTTGCTTTGTTCATTTTTAA</genome_strand>
        <mrna_strand>TTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAAGTATAGTGGAGGCTGCTATATGATTTGCTTTGTTCATTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711093" ref_strand="+" ref_description="SGN-E711093 [FB01AA06]">
      <seq>aaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaggttgcgaaggtgtaggattgagaacaaattaattcttcaccaagtttaaaagtagacttctccagattaaacaataaacatagattgcagatgttccttaagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtctttttttgttagaacagataaaaaaatcaatttgatgctaagcttttcccattcgagatgggaataacaaagtatagtggaggctgctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27642" stop="25148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27342" g_stop="27306" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="252" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="377" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25813" g_stop="25451" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="740" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="741" polyA_stop="755"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E711093" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27342" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAAGTATAGTGGAGGCTGCT</genome_strand>
        <mrna_strand>AAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAAGTATAGTGGAGGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693968" ref_strand="+" ref_description="SGN-E693968 [LH_Ea02L06](-)">
      <seq>tttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaggttgcgaaggtgtaggattgagaagaaattaattcttcaccaagtttaaaagtagacttctccagattaagcaataaacatagattgcagatgttcctttagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtcttttttgttagaacagatacaaaatcaatttgatgaataagcttttcccattcgagatgggaataacaagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27829" stop="25163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27529" g_stop="27432" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="142" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="357" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="482" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25468" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="827" r_length="345" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="829" polyA_stop="844"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E693968" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27529" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATG-CTAAGCTTTTCCCATTCGAGATGGGAATAACAAA</genome_strand>
        <mrna_strand>TTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAAGAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAGCAATAAACATAGATTGCAGATGTTCCTTTAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTC-TTTTTTGTTAGAACAGAT-ACAAAATCAATTTGATGAATAAGCTTTTCCCATTCGAGATGGGAATAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693932" ref_strand="+" ref_description="SGN-E693932 [LH_Ea02J18](-)">
      <seq>tggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatttacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgttttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctttacgtattgtcatgattggaactcttactggtgctcaatggggaatttatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactttgaggttgcgaaggtgtaggattgagaagaaattaatttttcaccaagtttaaaagtagacttctccagattaagcaataaacatagattgcagatgttcctttagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtcttttttgttagaacagatacaaaatcaatttgatgctaagcttttcccattcgagaggggaataacaagtaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27770" stop="25163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27470" g_stop="27432" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="83" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="298" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="423" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25468" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="767" r_length="344" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="769" polyA_stop="794"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E693932" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27470" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAA</genome_strand>
        <mrna_strand>TGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATTTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTTTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTTTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATTTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTTTGAGGTTGCGAAGGTGTAGGATTGAGAAGAAATTAATTTTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAGCAATAAACATAGATTGCAGATGTTCCTTTAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTC-TTTTTTGTTAGAACAGAT-ACAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGAGGGGAATAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693928" ref_strand="+" ref_description="SGN-E693928 [LH_Ea02J14](-)">
      <seq>aaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatttacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatttatgcaacttggtattagttttgctggtggatatatagctggtgttttctgtgccattgtatcccatcctgctgacaatcttgtttcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctttacgtattgtcatgattggaactcttactggtgctcaatggggaatttatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactttgaggttgcgaaggtgtaggattgagaagaaattaatttttccccaagtttaaaagtagacttctccagattaagcaataaacatagattgcagatgttcctttagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttttctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtcttttttgttagaacagatacaaaatcaatttgatgctaagcttttcccattcgagaggggaataccaagtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27650" stop="25163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27444" g_stop="27432" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="57" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="272" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.384" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="397" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25468" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="741" r_length="344" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="743" polyA_stop="769"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E693928" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27444" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAA</genome_strand>
        <mrna_strand>AAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATTTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATTTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTTTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTTTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTTTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATTTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTTTGAGGTTGCGAAGGTGTAGGATTGAGAAGAAATTAATTTTTCCCCAAGTTTAAAAGTAGACTTCTCCAGATTAAGCAATAAACATAGATTGCAGATGTTCCTTTAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTTTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTC-TTTTTTGTTAGAACAGAT-ACAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGAGGGGAATACCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690039" ref_strand="+" ref_description="SGN-E690039 [LH_Ea02H13]">
      <seq>cgcaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagggcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggggctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaggttgcgaaggtgtaggattgagaacaaattaattcttcgccaagtttaaaagtagacttctccagattaagcaataaacatacattgcagatgttcctttagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtcttttttgttacaacagatacaaaatcagtttgatgctaagcttttcccattcgagatgggactgacccccgggggatccactaattctaaaacggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26697" stop="25171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26399" g_stop="26186" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="339" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25813" g_stop="25468" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="683" r_length="344" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E690039" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26399" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAA</genome_strand>
        <mrna_strand>CGCAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGGGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGGGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCGCCAAGTTTAAAAGTAGACTTCTCCAGATTAAGCAATAAACATACATTGCAGATGTTCCTTTAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTC-TTTTTTGTTACAACAGAT-ACAAAATCAGTTTGATGCTAAGCTTTTCCCATTCGAGATGGGACTGACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693879" ref_strand="+" ref_description="SGN-E693879 [LH_Ea02H13](-)">
      <seq>gagatgatttccaagcatgcattcccaaagcctaaaaaggagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtttcgttcctcaacaatgcgaagggtgcaactgttggtgatcccgtaaagaagataggagtattggccctctttacccgtggtttccctttacgtattgtcatgattggaatttttactggtgctcaatggggaatttatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtccctgctgattttgaggttgcgaaggtgtaggattgagaagaaattaatttttccccaagtttaaaagtagatttttccagattaaccaataaacatagattgcagatgttcctttagtgctctttcgtagtaaccaagctggagagtgttttttcgctcaacaatctttccaattttatatttttttgattttcaaattttgggagagggggagttcccttaaaacttaaccattgcggattttttttttgttagaccagatacaaaatcaatttgatgttaagcttttcccattggggatgggattcccaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26662" stop="25163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26362" g_stop="26186" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.384" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="302" r_length="125" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25813" g_stop="25468" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="646" r_length="344" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="669"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E693879" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26362" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAA</genome_strand>
        <mrna_strand>GAGATGATTTCCAAGCATGCATTCCCAAAGCCTAAAAAGGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTTTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................CCCGTAAAGAAGATAGGAGTATTGGCCCTCTTTACCCGTGGTTTCCCTTTACGTATTGTCATGATTGGAATTTTTACTGGTGCTCAATGGGGAATTTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTCCCTGCTGATTTTGAGGTTGCGAAGGTGTAGGATTGAGAAGAAATTAATTTTTCCCCAAGTTTAAAAGTAGATTTTTCCAGATTAACCAATAAACATAGATTGCAGATGTTCCTTTAGTGCTCTTTCGTAGTAACCAAGCTGGAGAGTGTTTTTTCGCTCAACAATCTTTCCAATTTTATATTTTTTTGATTTTCAAATTTTGGGAGAGGGGGAGTTCCCTTAAAACTTAACCATTGCGGAT-TTTTTTTTTGTTAGACCAGAT-ACAAAATCAATTTGATGTTAAGCTTTTCCCATTGGGGATGGGATTCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310826" ref_strand="+" ref_description="SGN-E310826 [cLEZ-15-O21]">
      <seq>gaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaggttgcgaaggtgtaggattgagaacaaattaattcttcaccaagtttaaaagtagacttctccagattaaacaataaacatagattgcagatgttccttaagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtctttttttgttagaacagataaaaaaatcaatttgatgctaagcttttcccattcgagatgggaataacaaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26291" stop="25163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25991" g_stop="25934" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25813" g_stop="25468" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="404" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="416"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E310826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25991" e_stop="25934"/>
          <exon e_start="25813" e_stop="25468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAA</genome_strand>
        <mrna_strand>GAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303676" ref_strand="+" ref_description="SGN-E303676 [cLEY-7-E11]">
      <seq>tttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtctttttttgttagaacagataaaaaaatcaatttgatgctaagcttttcccattcgagatgggaataacaaagtnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="25960" stop="25163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25660" g_stop="25468" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="197" polyA_stop="206"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E303676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25660" e_stop="25468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAA</genome_strand>
        <mrna_strand>TTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690128" ref_strand="+" ref_description="SGN-E690128 [LH_Ea02L06]">
      <seq>ctgttatgtgccgaattcggcacgaggattgctctttgcccttttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaggttgcgaaggtgtaggattgagaagaaattaattcttcaccaagtttaaaagtagacttctccagattaagcaataaacatagattgcagatgttcctttagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtcttttttgttanaacagatacaaaatccatttgatgctaagcttttcccattcaagatgggaattaacagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27844" stop="25170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27544" g_stop="27432" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="140" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="184" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="399" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="524" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25472" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="864" r_length="340" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="870" polyA_stop="879"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E690128" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27544" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAA</genome_strand>
        <mrna_strand>ATTGCTCTTTGCCCTTTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAAGAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAGCAATAAACATAGATTGCAGATGTTCCTTTAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTC-TTTTTTGTTANAACAGAT-ACAAAATCCATTTGATGCTAAGCTTTTCCCATTCAAGATGGGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745386" ref_strand="+" ref_description="SGN-E745386 [GI|47105692]">
      <seq>ggagtggaaattgttttaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaggttgcgaaggtgtaggattgagaacaaattaattcttcaccaagtttaaaagtagacttctccagattaaacaataaacatagattgcagatgttccttaagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaagcattgcggatgtctttttttgttagaacagataaaaaaatcaatttgatgctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28744" stop="25198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28445" g_stop="28039" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="769" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="813" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="1028" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1029" r_stop="1153" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25813" g_stop="25498" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1154" r_stop="1469" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1470" polyA_stop="1482"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E745386" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1469</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28445" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGGAAATTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAA</genome_strand>
        <mrna_strand>GGAGTGGAAATTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368850" ref_strand="+" ref_description="SGN-E368850 [TUS-26-C11](-)">
      <seq>gcctggtttcgctaagggaattgtctgatggattgcgaaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaggttgcgaaggtgtaggattgagaacaaattaattcttcaccaagtttaaaagtagacttctccagattaaacaataaacatagattgcagatgttccttaagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaacttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27797" stop="25253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27497" g_stop="27432" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="111" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="326" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="451" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25553" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="712" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="722"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E368850" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27497" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGGTTTCGCT-AGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAA</genome_strand>
        <mrna_strand>GCCTGGTTTCGCTAAGGGAATTGTCTGATGGATTGCGAAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701947" ref_strand="+" ref_description="SGN-E701947 [FA17BE10]">
      <seq>agtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaggttgcgaaggtgtaggattgagaacaaattaattcttcaccaagtttaaaagtagacttctccagattaaacaataaacatagattgcagatgttccttaagtgctctttcgtagtaagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgattttcaaatttttggagagggggagttcccctaaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27966" stop="25254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27666" g_stop="27432" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="279" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="494" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="619" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25554" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="879" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E701947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27666" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTA</genome_strand>
        <mrna_strand>AGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556596" ref_strand="+" ref_description="SGN-E556596 [cTSD-3-P5]">
      <seq>cagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaagttgcgaaggtgtaggattgagaacaaattaattcttcaccaagtttaaaagtagacttctccagattaaacaataaacatagattgcagatgttccttaagtgctctttcgtaatagcaagctggagagtgttctttcgctcaacaatctttacaattttatatttctctgaatttcaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27986" stop="25283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27686" g_stop="27432" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="299" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="514" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="639" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25583" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="869" r_length="230" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E556596" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27686" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTT</genome_strand>
        <mrna_strand>CAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAAGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAAT-AGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGAATTTCAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693720" ref_strand="+" ref_description="SGN-E693720 [LH_Ea02A22](-)">
      <seq>catgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactctgaggttgcgaaggtgtaggattgagaagaaattaattcttcaccaagtttaaaagtagacttctccagattaagcaataaacatagattgcagatgttcctttagtgatctttcgtagtaagcaagctggagagtgttctttcgctcaaaaggctttacaattttatatttctctgatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27972" stop="25286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27672" g_stop="27432" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="285" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="500" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="625" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25587" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="851" r_length="226" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="852" polyA_stop="866"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E693720" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27672" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAA</genome_strand>
        <mrna_strand>CATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAAGAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAGCAATAAACATAGATTGCAGATGTTCCTTTAGTGATCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAAAAGGCTTTACAATTTTATATTTCTCTGA-TTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554593" ref_strand="+" ref_description="SGN-E554593 [cTSC-4-M23]">
      <seq>ctcaaggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggatcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgcttttcaaggtttttgttgggctgccaaacactggtggtgttgctccctgctgtacctgctgactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27981" stop="25470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27681" g_stop="27432" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="294" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="509" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="635" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25770" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="680" r_length="45" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E554593" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27681" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGC-TTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCT-CCTGCTGTACCTGCTGACTCTG</genome_strand>
        <mrna_strand>CTCAAGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGATCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAAACACTGGTGGTGTTGCTCCCTGCTGTACCTGCTGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255571" ref_strand="+" ref_description="SGN-E255571 [cLEG-30-P22]">
      <seq>gcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactggtggtgttgctcctgctgtacctgctgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27904" stop="25472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27604" g_stop="27432" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="217" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="432" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="557" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25772" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="599" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E255571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27604" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTC</genome_strand>
        <mrna_strand>GCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E368851" ref_strand="+" ref_description="SGN-E368851 [TUS-26-C11]">
      <seq>gcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgctttcaaggtttttgttgggctgccaacaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27904" stop="25633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27604" g_stop="27432" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="217" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="432" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25934" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="557" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25813" g_stop="25803" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="568" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E368851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27604" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25934"/>
          <exon e_start="25813" e_stop="25803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGTAAGTGTCTTCTTCTAACTCATAACTGGACATTCTAAACCTGTCTGCTTTTCCTTTATCAGTCTACTTTGAGATTTTAAATTTTTATGTTGGTTTTATTTTTTCTGACTTGATTTGTAGGCCAACAACTG</genome_strand>
        <mrna_strand>GCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT........................................................................................................................GCCAACAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346679" ref_strand="+" ref_description="SGN-E346679 [cTOF-28-G14]">
      <seq>catatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttaccagtgctcagggtgccatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagcctattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatctgntctcgttcctcaacaatgcnaagggtgcaaactgttggtgatgccgtaaagaaataaggagtattgggcctctttaccccgtggtctacttctacgtattgtcatgattggactcttnactggtgctcatggggaatctatgatgctttcaaggtttttgttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28070" stop="25635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27770" g_stop="27432" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="385" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="601" r_length="216" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="0.90"/>
            <acceptor a_prob="0.384" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26058" g_stop="25935" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="725" r_length="124" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E346679" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27770" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTA-CAGTGCTCAGGGTG-CATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGC-AACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTA-CCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTT-ACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGC</genome_strand>
        <mrna_strand>CATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACCAGTGCTCAGGGTGCCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGCCTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTGNTCTCGTTCCTCAACAATGCNAAGGGTGCAAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAATAAGGAGTATTGGGCCTCTTTACCCCGTGGTCTACTTCTACGTATTGTCATGATTGG-ACTCTTNACTGGTGCTC-ATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690088" ref_strand="+" ref_description="SGN-E690088 [LH_Ea02J14]">
      <seq>ccgttttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaactcttactggtgctcaatggggaatctatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28396" stop="25655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28101" g_stop="28039" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="425" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="469" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="684" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26058" g_stop="25955" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="788" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E690088" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28101" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGC</genome_strand>
        <mrna_strand>CCGTTTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690092" ref_strand="+" ref_description="SGN-E690092 [LH_Ea02J18]">
      <seq>ccgtttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggaacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacatattgtcatgattggaactcttactggtgctcaatggggaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28399" stop="25661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28100" g_stop="28039" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="424" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="468" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="683" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26058" g_stop="25961" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="781" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E690092" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28100" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
          <exon e_start="26058" e_stop="25961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTA</genome_strand>
        <mrna_strand>CCGTTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGAACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACATATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249674" ref_strand="+" ref_description="SGN-E249674 [cLEF-56-L7]">
      <seq>agtttgcgtcctttgagactattgtggagatgatctacaagcatgcggtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcgaagggtgcaactgttggtgatgccgtaaagaagataggagtattgggcctctttacccgtggtctacctctacgtattgtcatgattggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="26688" stop="25688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26388" g_stop="26186" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.384" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26058" g_stop="25988" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="274" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E249674" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26388" e_stop="26186"/>
          <exon e_start="26058" e_stop="25988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGTAAGCATTTAGTTGTTTGTTAGACCATCTGTTTCTCTTCCCCTTTAATTTTCTTATATGTTCGCAAGTCATTAATCCGCCATGTGACCCCCCCATTTGTTTTTAATAAAAAAAAACTATGTCTCAGGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAAC</genome_strand>
        <mrna_strand>AGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCGGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT...............................................................................................................................GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265723" ref_strand="+" ref_description="SGN-E265723 [cLEI-11-O5]">
      <seq>gtcggcgtccttcttaaagagcaaggtcccaggggattcttcaagggatgggttcctaccctgttaggtcacattgctcagggtgcatgcaagttcgtattctatgaatacttcaagaagtactactcggacctcgccagatcacaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaactgattgcaaatattgctctttgcccatttgaaactgtaaaggttcgcgttcatacacagcctgttttctctaggggattgactgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaagcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtgctttgagactattgtggagatgatctacaggcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttatgctggtggatatatagctggtgtctcctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgctaagggtgcaactgctggtgatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28056" stop="25885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27757" g_stop="27432" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="370" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26186" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="585" r_length="215" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E265723" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27757" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT</genome_strand>
        <mrna_strand>GTCGGCGTCCTTCTTAAAGAGCAAGGTCCCAGGGGATTCTTCAAGGGATGGGTTCCTACCCTGTTAGGTCACATTGCTCAGGGTGCATGCAAGTTCGTATTCTATGAATACTTCAAGAAGTACTACTCGGACCTCGCCAGATCACAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAACTGATTGCAAATATTGCTCTTTGCCCATTTGAAACTGTAAAGGTTCGCGTTCATACACAGCCTGTTTTCTCTAGGGGATTGACTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAAGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTGCTTTGAGACTATTGTGGAGATGATCTACAGGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTATGCTGGTGGATATATAGCTGGTGTCTCCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCTAAGGGTGCAACTGCTGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210126" ref_strand="+" ref_description="SGN-E210126 [cLEC-40-J9]">
      <seq>attctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggtttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctataaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttcctcaacaatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27959" stop="25907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27659" g_stop="27432" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="272" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26207" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="466" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E210126" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27659" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCG</genome_strand>
        <mrna_strand>ATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGTTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTATAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212695" ref_strand="+" ref_description="SGN-E212695 [cLEC-73-K14]">
      <seq>tgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccattgtatcccatcctgctgacaatcttgtctcgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28009" stop="25919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27709" g_stop="27432" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="322" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26219" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="504" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E212695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27709" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTC</genome_strand>
        <mrna_strand>TGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208831" ref_strand="+" ref_description="SGN-E208831 [cLEC-51-C15]">
      <seq>aagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagatttgctggtggatatatagcttggcgtcttctgtgccatcgtatcccatcctgctgacaatcttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="27967" stop="25924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27667" g_stop="27432" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="280" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26224" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="458" r_length="178" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E208831" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27667" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGC-TGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCT</genome_strand>
        <mrna_strand>AAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGATTTGCTGGTGGATATATAGCTTGGCGTCTTCTGTGCCATCGTATCCCATCCTGCTGACAATCTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203971" ref_strand="+" ref_description="SGN-E203971 [cLEC-22-G12]">
      <seq>tgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttctgtgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28009" stop="25953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27709" g_stop="27432" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="322" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26253" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="470" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E203971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27709" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCAT</genome_strand>
        <mrna_strand>TGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306972" ref_strand="+" ref_description="SGN-E306972 [cLEY-11-H3]">
      <seq>tggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattagttttgctggtggatatatagctggtgtcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28061" stop="25960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27761" g_stop="27432" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="374" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26400" g_stop="26260" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="515" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E306972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27761" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCT</genome_strand>
        <mrna_strand>TGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258016" ref_strand="+" ref_description="SGN-E258016 [cLEG-48-J22]">
      <seq>tcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcataaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttacatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctagagacgagtgcagcaaatctatgcaacttggtattagttttgctggaggatatatagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28388" stop="25969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28088" g_stop="28039" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="412" r_length="362" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="456" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26400" g_stop="26269" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="588" r_length="132" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E258016" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28088" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTG</genome_strand>
        <mrna_strand>TCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCATAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTACATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAGAGACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGAGGATATATAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204163" ref_strand="+" ref_description="SGN-E204163 [cLEC-13-K7]">
      <seq>tgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtcccaaagcctaaaaacgagtgcagcaaatctatgcaacttggtattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28423" stop="25992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28123" g_stop="28039" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="447" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="491" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26400" g_stop="26292" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="600" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E204163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28123" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAG</genome_strand>
        <mrna_strand>TGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705165" ref_strand="+" ref_description="SGN-E705165 [FA26BD08]">
      <seq>gattaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatgcagtccccaagcctaaaaacgagtgccgcaaatctatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28717" stop="26003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28417" g_stop="28039" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="738" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="782" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26400" g_stop="26303" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="880" r_length="98" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E705165" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28417" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAA</genome_strand>
        <mrna_strand>GATTAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTT-CC--CAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCCAAGCCTAAAAACGAGTGCCGCAAATCTATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244913" ref_strand="+" ref_description="SGN-E244913 [cLEF-2-A11]">
      <seq>agaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcaaggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28513" stop="26044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28213" g_stop="28039" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="537" r_length="362" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="581" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26400" g_stop="26344" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="638" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E244913" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28213" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATG</genome_strand>
        <mrna_strand>AGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAAGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704373" ref_strand="+" ref_description="SGN-E704373 [FA24AD12]">
      <seq>gagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatctacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28698" stop="26048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28398" g_stop="28039" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="722" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="766" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26400" g_stop="26348" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="819" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E704373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28398" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAG</genome_strand>
        <mrna_strand>GAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730559" ref_strand="+" ref_description="SGN-E730559 [LA24CA04]">
      <seq>atttttgtaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatatacaatgatgaagtttgcgtcctttgagactattgtggagatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28736" stop="26053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28436" g_stop="28039" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="760" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="804" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26400" g_stop="26353" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="852" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E730559" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28436" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCT</genome_strand>
        <mrna_strand>ATTTTTGTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689880" ref_strand="+" ref_description="SGN-E689880 [LH_Ea02A22]">
      <seq>aacgttgagacaagattcttcatttgccttctctgatctccgatctccgatctcgatctgaatctgtgtcaatggagaactcccgccggcaaatctcttctaccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccaatgttcccaacaacaacctcattattccggcacctaacgaacctggcaagatcgagatgtactccccgcagatctacgctgcctgtaccttcggtgggatcctcaggtgtggtctcgctcacatggctgtcactccactcgatctcgtcaaatgtaacatgcatattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccatgggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcataaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcacatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaagtttgttaaatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcatattccatatacaatgatgaagtttgcgtcctttgaaactattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28666" stop="26064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28350" g_stop="28039" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="342" r_length="313" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="704" r_length="362" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="748" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26400" g_stop="26364" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="785" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E689880" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28350" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
          <exon e_start="26400" e_stop="26364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTC-AGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCATGTAAGTTAAACCATCTGTTTATTATCATCAAAGAACTTGTTTATTACTTGGGCAATTCAATTATGTGAGTAGGGGTATGATTACTCAAATGAGTGAAGCTTTTTTTATGTTTGCTAGAATTCATAAAACCTATAGTTGTTTAGTTGAACCTGTCTTAAAAAACAATTGAACTTCCAAATGCTGAAACCTCACCTCGCCACCCTCAGAAAGAGCTTGTGCTAGTTTGGAATAGTTGTTTGAGCGAAATAGCTCTTACTTCTTCTGTTAAATAGAAAAAATAGAGATTATTCTCCATGTCTGTTTTATTATATTGGGTCAGAAACCTCATTTTGAATTGCAGTAGTTCCTATTATTGGGTTCTAGGCCCCAGAATGTTTGGGAGTGTAAAATGGCTGGATGAGGGCTTACGTTTGGATGCAGCCAGTGTTCAGGGAAGCTTGAAGCGGAAAAAAGCGATAATGCCCCGCTTCACTTGGGTGATGAAGTGCTCATTCTAGTCTGTGAAGCGTAGAAGGCTCGCATCACTTTGCTCCTGAACACTGGATGCAGCAGTTATTTATTGTCATTGCTGATGGAAATCAATCTATCTTTCTTGTTCTGGTAATGGGGCTTCCCTTTAGTTAGGTGAATGTAAGAAATCGAGCTACGTGATATGAAGTAATACAGTACATATATTAAGGGGCTGGGTCCCCCATGTCATGATGTTTTTTCTGCTATTGGGTGCTAAGTTTCTAGGGATGGATACATTTGAGTGGTGTTGGTAATTCAGATGATGCCTATTTTATCACACCACTGTGTATATGTTTTATTAGTGCGTATTTGGTTGTGCTATTGTTCTTTTAATAGTGACATTGGTTTAGTTATCATTTATTGGACATTAAGAATTAAATATCTAAAATTGCCAGATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGT</genome_strand>
        <mrna_strand>TCTCTGATCTCCGATCTCCGATCTCGATCTGAATCTGTGTCAATGGAGAACTCCCGCCGGCAAATCTCTTCTACCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAATGTTCCCAACAACAACCTCATTATTCCGGCACCTAACGAACCTGGCAAGATCGAGATGTACTCCCCGCAGATCTACGCTGCCTGTACCTTCGGTGGGATCCTCAGGTGTGGTCTCGCTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAT.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCATGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCATAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCACATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAGTTTGTTAAATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCATATTCCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAATGATGAAGTTTGCGTCCTTTGAAACTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731905" ref_strand="+" ref_description="SGN-E731905 [LA28CA12]">
      <seq>cggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggattgccgaaatttgttagatctgaaggtcccatgggcttgtacaaaggcttggtacctctttggggacgtcagattccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28702" stop="27004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28402" g_stop="28039" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="726" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27306" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="770" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E731905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28402" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT</genome_strand>
        <mrna_strand>CGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723162" ref_strand="+" ref_description="SGN-E723162 [FC19CD11]">
      <seq>gaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcaaaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcaaacacagcctggtttcgctaggggattgtctgatggattgccaaaatttgttaaatctgaaggtcccatgggcttgtacaaaggcttggtacctctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28717" stop="27022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28417" g_stop="28039" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27432" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="741" r_length="362" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27349" g_stop="27322" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="769" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E723162" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28417" e_stop="28039"/>
          <exon e_start="27793" e_stop="27432"/>
          <exon e_start="27349" e_stop="27322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGGTATGCTATTTATCTTTGTTTTGCACATTCCTTAATATGTACCTTACAGAACAGCTTTTTATTTTTTCCTACATTTGTGCAGCTTGTACAAAGGCTTGGTACCTCTTTGG</genome_strand>
        <mrna_strand>GAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAAAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAAACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCAAAATTTGTTAAATCTGAAGGTCCCATGGG..................................................................................CTTGTACAAAGGCTTGGTACCTCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343639" ref_strand="+" ref_description="SGN-E343639 [cTOF-20-D14]">
      <seq>caagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattgtctgatggattgccgaaattgttagatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28577" stop="27145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28277" g_stop="28039" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27660" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="373" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27659" i_stop="27480" i_length="180">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27479" g_stop="27445" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="407" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E343639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28277" e_stop="28039"/>
          <exon e_start="27793" e_stop="27660"/>
          <exon e_start="27479" e_stop="27445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTG</genome_strand>
        <mrna_strand>CAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGG....................................................................................................................................................................................ATTGTCTGATGGATTGCCGAAA-TTGTTAGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214478" ref_strand="+" ref_description="SGN-E214478 [cLEC-77-B10]">
      <seq>agagtggaaattgttttaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaaagctgtaagggtcgtggtcagacacagcctggtttcgctaggggattgtctgatggattgccgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28745" stop="27157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28445" g_stop="28039" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27457" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="744" r_length="337" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E214478" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28445" e_stop="28039"/>
          <exon e_start="27793" e_stop="27457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGGAAATTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTG-AAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAAT</genome_strand>
        <mrna_strand>AGAGTGGAAATTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAAGCTGT-AAGGGTCGTGGTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698097" ref_strand="+" ref_description="SGN-E698097 [FA05BA03]">
      <seq>attgttttaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccctgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28736" stop="27165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28436" g_stop="28039" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27465" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="727" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E698097" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28436" e_stop="28039"/>
          <exon e_start="27793" e_stop="27465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATT</genome_strand>
        <mrna_strand>ATTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCTGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271557" ref_strand="+" ref_description="SGN-E271557 [cLEM-23-D1]">
      <seq>caacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28559" stop="27167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28259" g_stop="28039" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27467" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="548" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E271557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28259" e_stop="28039"/>
          <exon e_start="27793" e_stop="27467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGA</genome_strand>
        <mrna_strand>CAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201827" ref_strand="+" ref_description="SGN-E201827 [cLEC-11-J12]">
      <seq>tgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttcagacacagcctggtttcgctaggggattgtctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28423" stop="27167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28123" g_stop="28039" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27467" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="412" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E201827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28123" e_stop="28039"/>
          <exon e_start="27793" e_stop="27467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGA</genome_strand>
        <mrna_strand>TGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347562" ref_strand="+" ref_description="SGN-E347562 [cTOF-26-E20]">
      <seq>ttgttttaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgtaaaggttcgtgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28735" stop="27205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28435" g_stop="28039" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27505" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="686" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E347562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28435" e_stop="28039"/>
          <exon e_start="27793" e_stop="27505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTC</genome_strand>
        <mrna_strand>TTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698561" ref_strand="+" ref_description="SGN-E698561 [FA06DB05]">
      <seq>ccccttttaattcatttgccttctctgatctccgatctccgacctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttctgtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttaccgtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcacatattgctctttgcccatttgaagctgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28682" stop="27216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28392" g_stop="28039" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27516" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="632" r_length="278" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E698561" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28392" e_stop="28039"/>
          <exon e_start="27793" e_stop="27516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAA</genome_strand>
        <mrna_strand>CCCCTTTTAATTCATTTGCCTTCTCTGATCTCCGATCTCCGACCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCTGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACCGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCACATATTGCTCTTTGCCCATTTGAAGCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302889" ref_strand="+" ref_description="SGN-E302889 [cLEW-26-M23]">
      <seq>cccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccatttgaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28561" stop="27219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28261" g_stop="28039" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27519" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="498" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E302889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28261" e_stop="28039"/>
          <exon e_start="27793" e_stop="27519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGT</genome_strand>
        <mrna_strand>CCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334486" ref_strand="+" ref_description="SGN-E334486 [cTOD-23-M16]">
      <seq>cgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattgcagatattgctctttgcccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28695" stop="27227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28395" g_stop="28039" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27527" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="624" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E334486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28395" e_stop="28039"/>
          <exon e_start="27793" e_stop="27527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTT</genome_strand>
        <mrna_strand>CGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311721" ref_strand="+" ref_description="SGN-E311721 [cLEZ-9-C17]">
      <seq>gagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaagtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28689" stop="27250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28389" g_stop="28039" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27550" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="595" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E311721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28389" e_stop="28039"/>
          <exon e_start="27793" e_stop="27550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTG</genome_strand>
        <mrna_strand>GAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394913" ref_strand="+" ref_description="SGN-E394913 [TUS-43-G13]">
      <seq>attgttttaggtcgaaatagaaaggggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28736" stop="27257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28436" g_stop="28039" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27557" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="635" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E394913" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28436" e_stop="28039"/>
          <exon e_start="27793" e_stop="27557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAA</genome_strand>
        <mrna_strand>ATTGTTTTAGGTCGAAATAGAAAGGGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270983" ref_strand="+" ref_description="SGN-E270983 [cLEM-22-I23]">
      <seq>ttgttttaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcanggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28735" stop="27258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28435" g_stop="28039" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27558" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="633" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E270983" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28435" e_stop="28039"/>
          <exon e_start="27793" e_stop="27558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGA</genome_strand>
        <mrna_strand>TTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCANGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211487" ref_strand="+" ref_description="SGN-E211487 [cLEC-67-L9]">
      <seq>aacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatataccttgctggttctgcatctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28494" stop="27258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28194" g_stop="28039" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27558" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="392" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E211487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28194" e_stop="28039"/>
          <exon e_start="27793" e_stop="27558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGA</genome_strand>
        <mrna_strand>AACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334105" ref_strand="+" ref_description="SGN-E334105 [cTOD-21-E9]">
      <seq>gagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaaaattctcagaagtactactcggacctcgccggagcagaaaatgctgcaaaaatacaaactctgatataccttgctgggtctgcatctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28700" stop="27259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28400" g_stop="28039" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27559" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="597" r_length="235" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E334105" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28400" e_stop="28039"/>
          <exon e_start="27793" e_stop="27559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTG</genome_strand>
        <mrna_strand>GAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAAAATTCTCAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAAATACAAACTCTGATATACCTTGCTGGGTCTGCATCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326891" ref_strand="+" ref_description="SGN-E326891 [cTOC-18-A11]">
      <seq>ttaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28730" stop="27280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28430" g_stop="28039" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27580" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="606" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E326891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28430" e_stop="28039"/>
          <exon e_start="27793" e_stop="27580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACC</genome_strand>
        <mrna_strand>TTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247060" ref_strand="+" ref_description="SGN-E247060 [cLEF-41-J9]">
      <seq>ttaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctgcgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcanggtgcatgcaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28730" stop="27282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28430" g_stop="28039" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27582" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="604" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E247060" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28430" e_stop="28039"/>
          <exon e_start="27793" e_stop="27582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATA</genome_strand>
        <mrna_strand>TTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTGCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCANGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266336" ref_strand="+" ref_description="SGN-E266336 [cLEI-3-E3]">
      <seq>agagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttaccagtgctagggtgcatncaagtttggattctatgaattcttcaagaagtactactcggacctcgccggagcagaaaatgctgcaaaatacaaaactctgatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28699" stop="27282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28399" g_stop="28039" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27582" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="573" r_length="212" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E266336" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28399" e_stop="28039"/>
          <exon e_start="27793" e_stop="27582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTA-CAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATA</genome_strand>
        <mrna_strand>AGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACCAGTGCT-AGGGTGCATNCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202082" ref_strand="+" ref_description="SGN-E202082 [cLEC-7-A23]">
      <seq>ttgttttaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcacggtgcatgcaagtttggattctatgaattcttcaagaagtactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28735" stop="27331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28435" g_stop="28039" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27631" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="560" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E202082" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28435" e_stop="28039"/>
          <exon e_start="27793" e_stop="27631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACT</genome_strand>
        <mrna_strand>TTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCACGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366534" ref_strand="+" ref_description="SGN-E366534 [cLPT-13-A19]">
      <seq>cgagacgagattcttcatttgccttctctgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccaatgttcccaacaacaacctcattattccggcacctaacgaacctggtaagatcgagatgtactccccgcagttctacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttcaggggatgggttcctaccctgttaggttacagtgctcagggtgcatgcaagtttggattctatgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28666" stop="27347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28364" g_stop="28039" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="336" r_length="325" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27647" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="483" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E366534" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28364" e_stop="28039"/>
          <exon e_start="27793" e_stop="27647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTC</genome_strand>
        <mrna_strand>TCTTC-ATTTGCCTTCTCTGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAATGTTCCCAACAACAACCTCATTATTCCGGCACCTAACGAACCTGGTAAGATCGAGATGTACTCCCCGCAGTTCTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206861" ref_strand="+" ref_description="SGN-E206861 [cLEC-33-K18]">
      <seq>tttaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccaggggattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28731" stop="27416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28431" g_stop="28039" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27716" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="471" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E206861" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28431" e_stop="28039"/>
          <exon e_start="27793" e_stop="27716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTC</genome_strand>
        <mrna_strand>TTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265913" ref_strand="+" ref_description="SGN-E265913 [cLEI-11-P14]">
      <seq>aatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaggagcatatcgtctggattcggcgtccttcttaaggagcaaggtcccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28721" stop="27426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28421" g_stop="28039" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27726" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="451" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E265913" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28421" e_stop="28039"/>
          <exon e_start="27793" e_stop="27726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAG</genome_strand>
        <mrna_strand>AATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAGGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337533" ref_strand="+" ref_description="SGN-E337533 [cTOE-11-N6]">
      <seq>ttgttttaggtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgtccttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28735" stop="27442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28435" g_stop="28039" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27742" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="449" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E337533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28435" e_stop="28039"/>
          <exon e_start="27793" e_stop="27742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTA</genome_strand>
        <mrna_strand>TTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324761" ref_strand="+" ref_description="SGN-E324761 [cTOC-8-E13]">
      <seq>ttgttttatgtcgaaatagaaaaaggaggtattcggagagcgagacgagattcttcatttgccttctctgatctccgatctccgatctccgatctccgatctccgatctcaatctgaatctgtgtcaatggagaactcccgccgtcagtctcttcttccaagctttctctactccccaacatcttctttttcttctttaactcccaaaacccttgctgttccagaaaccaccagtgttcccaacaacaacctcattattccggcacctaatgaacctggcaagatcgagatgtactccccgcagttttacgctgcctgtaccttcggtggtatcctcagttgtggtctcactcacatggctgtcactccactcgatctcgtcaaatgtaacatgcagattgaccctgcgaaatacaagagcatatcgtctggattcggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="28735" stop="27450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28435" g_stop="28039" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.591" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27793" g_stop="27750" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="441" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E324761" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28435" e_stop="28039"/>
          <exon e_start="27793" e_stop="27750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGGTACAGATTATGTTCATCTCATTTGCAGATCTATCCATTTCTCACACGATCTCAACTCTTCTCCACATGTATATTGTTGCTCATCTTCTAGATCTAAATTTTTAATCCTACTGTTATTTAAGATTTTCACATCTTGCTGCAACTTGTATCATCGTCTAATCCCACTATGAAACTTTATCTTCTTGTATTGTTTACATTAGGCATGAAGCATCTTAACTGACCGCAATCGTATAAATTATTACTAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGT</genome_strand>
        <mrna_strand>TTGTTTTATGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG.....................................................................................................................................................................................................................................................ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372081" ref_strand="+" ref_description="SGN-E372081 [TUS-30-L4](-)">
      <seq>caggtggaatttcggatggtacaattcctaaatggaactgttatgacattgcctgacaaattcagatctgatttctctccacctgatcagggcttctcaaaccgtggttctcatccacttgtcaattcagttcatgaccgagatgggccaccctctttctcgtcatcccattgggatttgcaccacaggaatcgacaaggactttcgaggaagaagtctggaaagagtaggcttcagatcgtgacaacaactggggatcatgaggctgatgacgagatgtcacctcgagaacccattaatcctaactccatccgagatttaaatgtgcaaaacagtagtaatgtttcccaatgcattggtattttcacacattcaatcccaataaagtgtcttcttactggccttcttggctgcagttcaatgatgtcaagtaagatatgcatagatgattcttcggtgacagtgctacaacattcctggaaaatgggatggcagatcaagagaatgaacgatactgcacatcttaggcttctctagtaaattattccattcaatagctgagaaaaattatcaagaattttggctcagcattcacgggatgtgtattagattcaggtctcgggcttgtacaattgcatgctgatactgaattgtgcctgtggattattatttcaatttgtagaattttttattaaatttttttgataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="32849" stop="31543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32549" g_stop="31844" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="719"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E372081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32549" e_stop="31844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCTAACTCCATCCGAGATTTAAATGTGCAAAACAGTAGTAATGTTTCCCAATGCATTGGTATTTTCACACATTCAATCCCAATAAAGTGTCTTCTTACTGGCCTTCTTGGCTGCAGTTCAATGATGTCAAGTAAGATATGCATAGATGATTCTTCGGTGACAGTGCTACAACATTCCTGGAAAATGGGATGGCAGATCAAGAGAATGAACGATACTGCACATCTTAGGCTTCTCTAGTAAATTATTCCATTCAATAGCTGAGAAAAATTATCAAGAATTTTGGCTCAGCATTCACGGGATGTGTATTAGATTCAGGTCTCGGGCTTGTACAATTGCATGCTGATACTGAATTGTGCCTGTGGATTATTATTTCAATTTGTAGAATTTTTTATTAAATTTTTTTGAT</genome_strand>
        <mrna_strand>CAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCTAACTCCATCCGAGATTTAAATGTGCAAAACAGTAGTAATGTTTCCCAATGCATTGGTATTTTCACACATTCAATCCCAATAAAGTGTCTTCTTACTGGCCTTCTTGGCTGCAGTTCAATGATGTCAAGTAAGATATGCATAGATGATTCTTCGGTGACAGTGCTACAACATTCCTGGAAAATGGGATGGCAGATCAAGAGAATGAACGATACTGCACATCTTAGGCTTCTCTAGTAAATTATTCCATTCAATAGCTGAGAAAAATTATCAAGAATTTTGGCTCAGCATTCACGGGATGTGTATTAGATTCAGGTCTCGGGCTTGTACAATTGCATGCTGATACTGAATTGTGCCTGTGGATTATTATTTCAATTTGTAGAATTTTTTATTAAATTTTTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727786" ref_strand="+" ref_description="SGN-E727786 [LA15CH11]">
      <seq>ttaatggcgaatgtcatatgaatttaagacctgatttgattgccggccgatccccagaggctgcacttacacctaatggcaagcgccaagcaagagctttggctgtttttctaaagtctcaagggattcgtttcaattctgtctatacatctcccttggatcgggcacgagctactgccctctctgtttgtcaggaaataaacttttcggaggaacggatacaatcctctgatggtctactggaaatgagtcaggggcattgggagggatgccaccgctcggatatttttacacctgaaacagctagcctaatggaaaagttccagcctgatttttcagcaccatctggagagtcactgaggcaggtggaatttcggatggtacaattcctaaatggaactgttatgacattgcctgacaaattcagatctgatttctctccacctgatcagggcttctcaaaccgtggttctcatccacttgtcaattcagttcatgaccgagatgggccaccctctttctcgtcatcccattgggatttgcaccacaggaatcgacaaggactttcgaggaagaagtctggaaagagtaggcttcagatcgtgacaacaactggggatcatgaggctgatgacgagatgtcacctcgagaacccattaatcctaactccatccgagatttnaatgtgcaaaacagtagtaatgtttcccaatgcattggtattttcacacattcaatcccaataaagtgtcttcttactggccttcttggctgcagttcaatgatgtcaagtaagatatgcatagatgattcttcggtgacagtgctacaacattcctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="34335" stop="31768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34036" g_stop="33843" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33842" i_stop="32718" i_length="1125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32717" g_stop="32068" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="844" r_length="650" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E727786" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34036" e_stop="33843"/>
          <exon e_start="32717" e_stop="32068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGGCGAATGTCATATGAATTTAAGACCTGATTTGATTGCCGGCCGATCCCCAGAGGCTGCACTTACACCTAATGGCAAGCGCCAAGCAAGAGCTTTGGCTGTTTTTCTAAAGTCTCAAGGGATTCGTTTCAATTCTGTCTATACATCTCCCTTGGATCGGGCACGAGCTACTGCCCTCTCTGTTTGTCAGGTAGTATACTATTAACCTCAAAATCAAATCTATCTTTGTGGCCAACAAAATTGAATCCTCCAATAATGTCGATGGGTGTCCCTCGGATCCTTCAAAAGTTGTGCTTTTTTGATGATCCGACAGGGATACAATGACATTTATGGAGGACTCCGACTATCAGCTTTGCAGGGGTAGATTTCTTCATTTTTAGGCAGCTGCATGTTTCCTCTTGTACTAGTCTTAAGTTTTATACTTCTCTGGTGATTGTGTACAGTGACTTCTGCAGTTTTGCCCTGAAAGTAACCATTGGATTTCTTAGCTGCTCTAGGTTCAGGATTTATATGGCTGTCAGAGTAATTTTGGTCTTTGATTGTATAGCAGACATTGGAATTATGTTAGTTCAAATAAAGTTGGGTCCAAAACAAAATCTTAAAGGTGACTTTTGTTTTCAGATGTTCTACGGTTAACAATTAGACCAACTTTTGAAGTACTTTTGGGATAAAAGTTGGTCCAATTCATGTAGTATAAATAATAAGTTTCATAGTCGAGGAAATCAGATATCATTTAGATCAGGAAAGGGAAACTAATTGAATCCTTCTGGGATAGGTAAGAGTATACCATATGATCATGCTCTATTACATTTCCACACGATGCTTGCAAAAATATCAGTCTTGTTAATTTATCAATGAAAGAGACAGTAATATTAGTACTTTCTTTGTCTATAGTGTAAAGTTTTCAGCAATATTAGTACTGCTAAGAAAAGTTGCATATTCTGCATTTTTGTAAGGCATAATTGGCTTTTCAGCATATTTGATGTGTCAATAGCATTCTTGCTGTCTTGACCACTAGCAAATTCAAACATTCTGTTACTGTCTTTCAGAGCAGCCAAGTCACAGTTTGACATTACATCCCCAAATTATACAAGGAACAACTTCGAGCAATAAGAGCTTGCTTCCTCTTGTCTCTAGTTATAAAGACTTTCCCATTCTTAGTGATGCATTCTATGATATTCTGTATGGGGATTTTGACTGTAAGTAGATTGACTGGATTGGCAACGTTGAAGGGATTTAGAGTAACATGTTATTTGCATGTTTGTTTTAAGGACTTACGAATTTGCTAATGAATGGATCTCTGTTGACTGTGCAGGAAATAAACTTTTCGGAGGAACGGATACAATCCTCTGATGGTCTACTGGAAATGAGTCAGGGGCATTGGGAGGGATGCCACCGCTCGGATATTTTTACACCTGAAACAGCTAGCCTAATGGAAAAGTTCCAGCCTGATTTTTCAGCACCATCTGGAGAGTCACTGAGGCAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCTAACTCCATCCGAGATTTAAATGTGCAAAACAGTAGTAATGTTTCCCAATGCATTGGTATTTTCACACATTCAATCCCAATAAAGTGTCTTCTTACTGGCCTTCTTGGCTGCAGTTCAATGATGTCAAGTAAGATATGCATAGATGATTCTTCGGTGACAGTGCTACAACATTCCTGGAA</genome_strand>
        <mrna_strand>TTAATGGCGAATGTCATATGAATTTAAGACCTGATTTGATTGCCGGCCGATCCCCAGAGGCTGCACTTACACCTAATGGCAAGCGCCAAGCAAGAGCTTTGGCTGTTTTTCTAAAGTCTCAAGGGATTCGTTTCAATTCTGTCTATACATCTCCCTTGGATCGGGCACGAGCTACTGCCCTCTCTGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAAACTTTTCGGAGGAACGGATACAATCCTCTGATGGTCTACTGGAAATGAGTCAGGGGCATTGGGAGGGATGCCACCGCTCGGATATTTTTACACCTGAAACAGCTAGCCTAATGGAAAAGTTCCAGCCTGATTTTTCAGCACCATCTGGAGAGTCACTGAGGCAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCTAACTCCATCCGAGATTTNAATGTGCAAAACAGTAGTAATGTTTCCCAATGCATTGGTATTTTCACACATTCAATCCCAATAAAGTGTCTTCTTACTGGCCTTCTTGGCTGCAGTTCAATGATGTCAAGTAAGATATGCATAGATGATTCTTCGGTGACAGTGCTACAACATTCCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237863" ref_strand="+" ref_description="SGN-E237863 [cLED-18-D4]">
      <seq>ggaacggatacaatcctctgatggtctactggaaatgagtcaggggcattgggagggatgccaccgctcggatatttttacacgctgaagcggctagcctaatggaaaagttccagcctgatttttcagcaccatctggagagtcactgaggcaggtggaatttcggatggtacaattcctaaatggaactgttatgacattgcctgacaaattcagatctgatttctctccacctgatcagggcttctcaaaccgtggttctcatccacttgtcaattcagttcatgaccgagatgggccaccctctttctcgtcatcccattgggatttgcaccacaggaatcgacaaggactttcgaggaagaagtctggaaagagtaggcttcagatcgtgacaacaactggggatcatgaggctgatgacgagatgtcacctcgagaacccattaatcctaactccatccgagatttaaatgtgcaaaacagtagtaatgtttcccaatgcattggtattttcacacattcaatcccaataaagtgtcttcttactggccttcttggctgcagttcaatgatgtcaagtaagatatgcatagatgattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="33000" stop="31795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32700" g_stop="32095" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E237863" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32700" e_stop="32095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACGGATACAATCCTCTGATGGTCTACTGGAAATGAGTCAGGGGCATTGGGAGGGATGCCACCGCTCGGATATTTTTACAC-CTGAAACAGCTAGCCTAATGGAAAAGTTCCAGCCTGATTTTTCAGCACCATCTGGAGAGTCACTGAGGCAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCTAACTCCATCCGAGATTTAAATGTGCAAAACAGTAGTAATGTTTCCCAATGCATTGGTATTTTCACACATTCAATCCCAATAAAGTGTCTTCTTACTGGCCTTCTTGGCTGCAGTTCAATGATGTCAAGTAAGATATGCATAGATGATTCTTC</genome_strand>
        <mrna_strand>GGAACGGATACAATCCTCTGATGGTCTACTGGAAATGAGTCAGGGGCATTGGGAGGGATGCCACCGCTCGGATATTTTTACACGCTGAAGCGGCTAGCCTAATGGAAAAGTTCCAGCCTGATTTTTCAGCACCATCTGGAGAGTCACTGAGGCAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCTAACTCCATCCGAGATTTAAATGTGCAAAACAGTAGTAATGTTTCCCAATGCATTGGTATTTTCACACATTCAATCCCAATAAAGTGTCTTCTTACTGGCCTTCTTGGCTGCAGTTCAATGATGTCAAGTAAGATATGCATAGATGATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372082" ref_strand="+" ref_description="SGN-E372082 [TUS-30-L4]">
      <seq>aatttaagacctgatttgattgccggccgatccccagaggctgcacttacacctaatggcaagcgccaagcaagagctttggctgtttttctaaagtctcaagggattcgtttcaattctgtctatacatctcccttggatcgggcacgagctactgccctctctgtttgtcaggaaataaacttttcggaggaacggatacaatcctctgatggtctactggaaatgagtcaggggcattgggagggatgccaccgctcggatatttttacacctgaaacagctagcctaatggaaaagttccagcctgatttttcagcaccatctggagagtcactgaggcaggtggaatttcggatggtacaattcctaaatggaactgttatgacattgcctgacaaattcagatctgatttctctccacctgatcagggcttctcaaaccgtggttctcatccacttgtcaattcagttcatgaccgagatgggccaccctctttctcgtcatcccattgggatttgcaccacaggaatcgacaaggactttcgaggaagaagtctggaaagagtaggcttcagatcgtgacaacaactggggatcatgaggctgatgacgagatgtcacctcgagaacccattaatcctaactccatccgagatttaaatgtgcaaaacagtagtaatgtttcccaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="34316" stop="31895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34016" g_stop="33843" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33842" i_stop="32718" i_length="1125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32717" g_stop="32195" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="697" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E372082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34016" e_stop="33843"/>
          <exon e_start="32717" e_stop="32195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAAGACCTGATTTGATTGCCGGCCGATCCCCAGAGGCTGCACTTACACCTAATGGCAAGCGCCAAGCAAGAGCTTTGGCTGTTTTTCTAAAGTCTCAAGGGATTCGTTTCAATTCTGTCTATACATCTCCCTTGGATCGGGCACGAGCTACTGCCCTCTCTGTTTGTCAGGTAGTATACTATTAACCTCAAAATCAAATCTATCTTTGTGGCCAACAAAATTGAATCCTCCAATAATGTCGATGGGTGTCCCTCGGATCCTTCAAAAGTTGTGCTTTTTTGATGATCCGACAGGGATACAATGACATTTATGGAGGACTCCGACTATCAGCTTTGCAGGGGTAGATTTCTTCATTTTTAGGCAGCTGCATGTTTCCTCTTGTACTAGTCTTAAGTTTTATACTTCTCTGGTGATTGTGTACAGTGACTTCTGCAGTTTTGCCCTGAAAGTAACCATTGGATTTCTTAGCTGCTCTAGGTTCAGGATTTATATGGCTGTCAGAGTAATTTTGGTCTTTGATTGTATAGCAGACATTGGAATTATGTTAGTTCAAATAAAGTTGGGTCCAAAACAAAATCTTAAAGGTGACTTTTGTTTTCAGATGTTCTACGGTTAACAATTAGACCAACTTTTGAAGTACTTTTGGGATAAAAGTTGGTCCAATTCATGTAGTATAAATAATAAGTTTCATAGTCGAGGAAATCAGATATCATTTAGATCAGGAAAGGGAAACTAATTGAATCCTTCTGGGATAGGTAAGAGTATACCATATGATCATGCTCTATTACATTTCCACACGATGCTTGCAAAAATATCAGTCTTGTTAATTTATCAATGAAAGAGACAGTAATATTAGTACTTTCTTTGTCTATAGTGTAAAGTTTTCAGCAATATTAGTACTGCTAAGAAAAGTTGCATATTCTGCATTTTTGTAAGGCATAATTGGCTTTTCAGCATATTTGATGTGTCAATAGCATTCTTGCTGTCTTGACCACTAGCAAATTCAAACATTCTGTTACTGTCTTTCAGAGCAGCCAAGTCACAGTTTGACATTACATCCCCAAATTATACAAGGAACAACTTCGAGCAATAAGAGCTTGCTTCCTCTTGTCTCTAGTTATAAAGACTTTCCCATTCTTAGTGATGCATTCTATGATATTCTGTATGGGGATTTTGACTGTAAGTAGATTGACTGGATTGGCAACGTTGAAGGGATTTAGAGTAACATGTTATTTGCATGTTTGTTTTAAGGACTTACGAATTTGCTAATGAATGGATCTCTGTTGACTGTGCAGGAAATAAACTTTTCGGAGGAACGGATACAATCCTCTGATGGTCTACTGGAAATGAGTCAGGGGCATTGGGAGGGATGCCACCGCTCGGATATTTTTACACCTGAAACAGCTAGCCTAATGGAAAAGTTCCAGCCTGATTTTTCAGCACCATCTGGAGAGTCACTGAGGCAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCTAACTCCATCCGAGATTTAAATGTGCAAAACAGTAGTAATGTTTCCCAATGCA</genome_strand>
        <mrna_strand>AATTTAAGACCTGATTTGATTGCCGGCCGATCCCCAGAGGCTGCACTTACACCTAATGGCAAGCGCCAAGCAAGAGCTTTGGCTGTTTTTCTAAAGTCTCAAGGGATTCGTTTCAATTCTGTCTATACATCTCCCTTGGATCGGGCACGAGCTACTGCCCTCTCTGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAAACTTTTCGGAGGAACGGATACAATCCTCTGATGGTCTACTGGAAATGAGTCAGGGGCATTGGGAGGGATGCCACCGCTCGGATATTTTTACACCTGAAACAGCTAGCCTAATGGAAAAGTTCCAGCCTGATTTTTCAGCACCATCTGGAGAGTCACTGAGGCAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCTAACTCCATCCGAGATTTAAATGTGCAAAACAGTAGTAATGTTTCCCAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286968" ref_strand="+" ref_description="SGN-E286968 [cLES-6-C8]">
      <seq>aatttaagacctgatttgattgccggccgatccccagaggctgcacttacacctaatggcaagcgccaagcaagagctttggctgtttttctaaagtctcaagggattcgtttcaattctgtctatacatctcccttggatcgggcacgagctactgccctctctgtttgtcaggaaataaacttttcggaggaacggatacaatcctctgatggtctactggaaatgagtcaggggcattgggagggatgccaccgctcggatatttttacacctgaaacagctagcctaatggaaaagttccagcctgatttttcagcaccatctggagagtcactgaggcaggtggaatttcggatggtacaattcctaaatggaactgttatgacattgcctgacaaattcagatctgatttctctccacctgatcagggcttctcaaaccgtggttctcatccacttgtcaattcagttcatgaccgagatgggccaccctctttctcgtcatcccattgggatttgcaccacaggaatcgacaaggactttcgaggaagaagtctggaaagagtaggcttcagatcgtgacaacaactggggatcatgaggctgatgacgagatgtcacctcgagaacccattaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="34316" stop="31947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34016" g_stop="33843" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33842" i_stop="32718" i_length="1125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32717" g_stop="32247" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="645" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E286968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34016" e_stop="33843"/>
          <exon e_start="32717" e_stop="32247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAAGACCTGATTTGATTGCCGGCCGATCCCCAGAGGCTGCACTTACACCTAATGGCAAGCGCCAAGCAAGAGCTTTGGCTGTTTTTCTAAAGTCTCAAGGGATTCGTTTCAATTCTGTCTATACATCTCCCTTGGATCGGGCACGAGCTACTGCCCTCTCTGTTTGTCAGGTAGTATACTATTAACCTCAAAATCAAATCTATCTTTGTGGCCAACAAAATTGAATCCTCCAATAATGTCGATGGGTGTCCCTCGGATCCTTCAAAAGTTGTGCTTTTTTGATGATCCGACAGGGATACAATGACATTTATGGAGGACTCCGACTATCAGCTTTGCAGGGGTAGATTTCTTCATTTTTAGGCAGCTGCATGTTTCCTCTTGTACTAGTCTTAAGTTTTATACTTCTCTGGTGATTGTGTACAGTGACTTCTGCAGTTTTGCCCTGAAAGTAACCATTGGATTTCTTAGCTGCTCTAGGTTCAGGATTTATATGGCTGTCAGAGTAATTTTGGTCTTTGATTGTATAGCAGACATTGGAATTATGTTAGTTCAAATAAAGTTGGGTCCAAAACAAAATCTTAAAGGTGACTTTTGTTTTCAGATGTTCTACGGTTAACAATTAGACCAACTTTTGAAGTACTTTTGGGATAAAAGTTGGTCCAATTCATGTAGTATAAATAATAAGTTTCATAGTCGAGGAAATCAGATATCATTTAGATCAGGAAAGGGAAACTAATTGAATCCTTCTGGGATAGGTAAGAGTATACCATATGATCATGCTCTATTACATTTCCACACGATGCTTGCAAAAATATCAGTCTTGTTAATTTATCAATGAAAGAGACAGTAATATTAGTACTTTCTTTGTCTATAGTGTAAAGTTTTCAGCAATATTAGTACTGCTAAGAAAAGTTGCATATTCTGCATTTTTGTAAGGCATAATTGGCTTTTCAGCATATTTGATGTGTCAATAGCATTCTTGCTGTCTTGACCACTAGCAAATTCAAACATTCTGTTACTGTCTTTCAGAGCAGCCAAGTCACAGTTTGACATTACATCCCCAAATTATACAAGGAACAACTTCGAGCAATAAGAGCTTGCTTCCTCTTGTCTCTAGTTATAAAGACTTTCCCATTCTTAGTGATGCATTCTATGATATTCTGTATGGGGATTTTGACTGTAAGTAGATTGACTGGATTGGCAACGTTGAAGGGATTTAGAGTAACATGTTATTTGCATGTTTGTTTTAAGGACTTACGAATTTGCTAATGAATGGATCTCTGTTGACTGTGCAGGAAATAAACTTTTCGGAGGAACGGATACAATCCTCTGATGGTCTACTGGAAATGAGTCAGGGGCATTGGGAGGGATGCCACCGCTCGGATATTTTTACACCTGAAACAGCTAGCCTAATGGAAAAGTTCCAGCCTGATTTTTCAGCACCATCTGGAGAGTCACTGAGGCAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCT</genome_strand>
        <mrna_strand>AATTTAAGACCTGATTTGATTGCCGGCCGATCCCCAGAGGCTGCACTTACACCTAATGGCAAGCGCCAAGCAAGAGCTTTGGCTGTTTTTCTAAAGTCTCAAGGGATTCGTTTCAATTCTGTCTATACATCTCCCTTGGATCGGGCACGAGCTACTGCCCTCTCTGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAAACTTTTCGGAGGAACGGATACAATCCTCTGATGGTCTACTGGAAATGAGTCAGGGGCATTGGGAGGGATGCCACCGCTCGGATATTTTTACACCTGAAACAGCTAGCCTAATGGAAAAGTTCCAGCCTGATTTTTCAGCACCATCTGGAGAGTCACTGAGGCAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223449" ref_strand="+" ref_description="SGN-E223449 [cLEL-14-I9](-)">
      <seq>tcaagggaagataggtgcaagcacaggtggacgctaaagctacaggttcgttgttgcagctatccggacatcagtattcatccggagtttggtaggtcctcatgctttcgaggatgctaccgttttacattctagcgtagttttagagttgagctagcggagcatgttccactagcgtttctttcctgttttggttcaaactttgtattggcgctattttggccgatatacaagtaatacttaatgaattatttctttcagttgcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="38843" stop="46044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39146" g_stop="39420" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="289" r_length="275" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E223449" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39146" e_stop="39420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAAGCACAGGTGGACGCTAGAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGTGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAATGTTAGATGGTT</genome_strand>
        <mrna_strand>GTGCAAGCACAGGTGGACGCTAAAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319829" ref_strand="+" ref_description="SGN-E319829 [cTOB-12-D18]">
      <seq>taacaatggcgtgtactgtggattttcggtgcctggacgaaggattcggaggaaaaacgtacaaacgaaagagagcagagaaagagcaaggtaatggtataaaagccatggaagtggaggagattccaaggaagagacaagcggtaccatctgaggaggatccaaacaaacctgtattgggaaggccgacatacgacggggtgattgcagggagggtatcgggaaggaattggaaacagccgcgtaaacacagatcatcggcagcgaaggtgaacgtgaaggggaagtcattggagcagaggatgaaagagaaggagattaaaaaggcgtacactgagagaatcaatgagctcaaggaagtgataagacacaacaaggtggagaatcggaatcagagggaggaaagagagaaaaagaagcaggaaaacattctcaagtctggcaccaaggttcagaagatcaccaatccaaaaaccctaaaaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="51101" stop="52187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51401" g_stop="51887" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E319829" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51401" e_stop="51887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACAAGGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAAGCGGAAGCAGAGGGAGGAAAGAGAGAAAAAGAAGCAGGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCCTAAAAAAGAT</genome_strand>
        <mrna_strand>TAACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAAAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAACGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACACTGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAATCGGAATCAGAGGGAGGAAAGAGAGAAAAAGAAGCAGGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCCTAAAAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392815" ref_strand="+" ref_description="SGN-E392815 [TUS-37-C4]">
      <seq>taacaatggcgtgtactgtggattttcggtgcctggacgaaggattcggaggaaaaacgtacaaacgaaagagagcagagaaagagcaaggtaatggtatagaagccatggaagtggaggagattccaaggaagagacaagcggtaccatctgaggaggatccaaacaaacctgtattgggaaggccgacatacgacggggtgattgcagggagggtatcgggaaggaattggattcagccgcgtaaactcagatcatcggcagcgaaggtgagcgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="51101" stop="51980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51401" g_stop="51680" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E392815" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51401" e_stop="51680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAA</genome_strand>
        <mrna_strand>TAACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGATTCAGCCGCGTAAACTCAGATCATCGGCAGCGAAGGTGAGCGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373923" ref_strand="+" ref_description="SGN-E373923 [TUS-33-C13]">
      <seq>aacaatggcgtgtactgtggattttcggtgcctggacgaaggattcggaggaaaaacgtacaaacgaaagagagcagagaaagagcaaggtaatggtatagaagccatggaagtggaggagattccaaggaagagacaagcggtaccatctgaggaggatccaaacaaacctgtattgggaaggccgacatacgacggggtgattgcagggagggtatcgggaaggaattggaaacagccgcgtaaacacagatcatcggcagcgaaggtgagcgtgaaggggaagtcattggagcagaggatgaaagagaaggagattaaaaaggcgtacaaggagagaatcaatgagctcaaggaagtgataagacacaacaaggtggagaagcggaagcagagggaggaaagagagaaaaagaagcaggaaaacattctcaagtctggcaccaaggttcagaagatcaccaatccaaaaaccctaaaaaagattgccaaatctaagcagaggaagctcctcaaggttgtttctgaccatcttcttaaccgtggaaacaacaattctatctcatagattaatagttagtttgctcttattatgttttttgctgatccatagtagtatttactgggttatatttgttcccttttgattcatgttttgtttggtataacacaaatttattacgcacattttaagttttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="51102" stop="52398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51402" g_stop="52092" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="722"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E373923" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51402" e_stop="52092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACAAGGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAAGCGGAAGCAGAGGGAGGAAAGAGAGAAAAAGAAGCAGGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCCTAAAAAAGATTGCCAAATCTAAGCAGAGGAAGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACT-GGTTATATTTGTTCCTTCTGAATTCATGTATTGTTTGTTATAACACAAATTTATGACGCACATTCGA</genome_strand>
        <mrna_strand>AACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACAAGGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAAGCGGAAGCAGAGGGAGGAAAGAGAGAAAAAGAAGCAGGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCCTAAAAAAGATTGCCAAATCTAAGCAGAGGAAGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAATAGTTAGTTTGCTCTTATTATGTTTTTTGCTGATCCATAGTAGTATTTACTGGGTTATATTTGTTCCCTTTTGATTCATGTTTTGTTTGGTATAACACAAATTTATTACGCACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322582" ref_strand="+" ref_description="SGN-E322582 [cTOB-26-N16]">
      <seq>aacaatggcgtgtactgtggattttcggtgcctggacgaaggattcggaggaaaaacgtacaaacgaaagagagcagagaaagagcaaggtaatggtatagaagccatggaagtggaggagattccaaggaagagacaagcggtaccatctgaggaggatccaaacaaacctgtattgggaaggccgacatacgacggggtgattgcagggagggtatcgggaaggaattggaaacagccgcgtaaacacagatcatcggcagcgaaggtgagcgtgaaggggaagtcattggagcagaggatgaaagagaaggagattaaaaaggcgtacaaggagagaatcaatgagctcaaggaagtgataagacacaacaaggtggagaagcggaagcagagggaggaaagagagaaaaagaagcaggaaaacattctcaagtctggcaccaaggttcagaagatcaccaatccaaaaaccctaaaaaagattgccaaatctaagcagaggaagctcctcaaggttgtttctgaccatcttcttaaccgtggaaacaacaattctatctcatagattaatagttagtttgctcttattatgtttttgcttgatccatagtagtatttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="51102" stop="52326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51402" g_stop="52026" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E322582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51402" e_stop="52026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACAAGGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAAGCGGAAGCAGAGGGAGGAAAGAGAGAAAAAGAAGCAGGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCCTAAAAAAGATTGCCAAATCTAAGCAGAGGAAGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACTG</genome_strand>
        <mrna_strand>AACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACAAGGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAAGCGGAAGCAGAGGGAGGAAAGAGAGAAAAAGAAGCAGGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCCTAAAAAAGATTGCCAAATCTAAGCAGAGGAAGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300453" ref_strand="+" ref_description="SGN-E300453 [cLET-45-D19]">
      <seq>aacaatggcgtgtactgtggattttcggtgcctggacgaaggattcggaggaaaaacgtacaaacgaaagagagcagagaaagagcaaggtaatggtatagaagccatggaagtggaggagattccaaggaagagacaagcggtaccatctgaggaggatccaaacaaacctgtattgggaaggccgacatacgacggggtgattgcagggagggtatcgggaaggaattggaaacagccgcgtaaacacagatcatcggcagcgaaggtgagcgtgaaggggaagtcattggagcagaggatgaaagagaaggagattaaaaaggcgtacaaggagagaatcaatgagctcaaggaagtgataagacacaacaaggtggagaagcggaagcagagggaggaaagagagaaaaagaagcatgaaaacattctcaagtctggcaccaaggttcagaagatcaccaatccaaaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="51102" stop="52177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51402" g_stop="51877" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E300453" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51402" e_stop="51877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACAAGGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAAGCGGAAGCAGAGGGAGGAAAGAGAGAAAAAGAAGCAGGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCC</genome_strand>
        <mrna_strand>AACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACAAGGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAAGCGGAAGCAGAGGGAGGAAAGAGAGAAAAAGAAGCATGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700164" ref_strand="+" ref_description="SGN-E700164 [FA12BC11]">
      <seq>cactggcgtgtactgtggattttcggtgcctggacgaaggattcggaggaaaaacgtacaaacgaaagagagcagagaaagagcaaggtaatggtatagaagccatggaagtggaggagattccaaggaagagacaagcggtaccatctgaggaggatccaaacaaacctgtattgggaaggccgacatacgacggggtgattgcagggagggtatcgggaaggaattggaaacagccgcgtaaacacagatcatcggcagcgaaggtgagcgtgaaggggaagtcattggagcagaggatgaaagagaaggagattaaaaaggcgtacaaggagagaatcaatgagctcaaggaagtgataagacacaacaaggtggagaagcggaagcagagggaggaaagagagaaaaagaagcaggaaaacattctcaagtctggcaccaaggttcagaagatcaccaatccaaaaaccctaaaaaagattgccaaatctaagcagaggaagctcctcaaggttgtttctgaccatcttcttaaccgtggaaacaacaattctatctcatagattaatagttagtttgctcttattatgtttttgcttgatccatagtagtatttactggttatatttgttccttctgaattcctgtattgtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="51104" stop="52363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51404" g_stop="52063" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E700164" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51404" e_stop="52063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACAAGGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAAGCGGAAGCAGAGGGAGGAAAGAGAGAAAAAGAAGCAGGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCCTAAAAAAGATTGCCAAATCTAAGCAGAGGAAGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACTGGTTATATTTGTTCCTTCTGAATTCATGTATTGTTTGT</genome_strand>
        <mrna_strand>CACTGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACAAGGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAAGCGGAAGCAGAGGGAGGAAAGAGAGAAAAAGAAGCAGGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCCTAAAAAAGATTGCCAAATCTAAGCAGAGGAAGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACTGGTTATATTTGTTCCTTCTGAATTCCTGTATTGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373922" ref_strand="+" ref_description="SGN-E373922 [TUS-33-C13](-)">
      <seq>ccccaatccaaaaaccctaaaaaagattgccaaatttaagcagaggaagctcctcaaggttgtttctgaccatcttcttaaccgtggaaacaacaattctatctcatagattaatagttagtttgctcttattatgtttttgcttgatccatagtagtatttactggttatatttgttccttctgaattcatgtattgtttgttataacacaaatttatgacgcacattcgagtttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="51561" stop="52398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51861" g_stop="52098" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="239" polyA_stop="258"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E373922" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51861" e_stop="52098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAATCCAAAAACCCTAAAAAAGATTGCCAAATCTAAGCAGAGGAAGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACTGGTTATATTTGTTCCTTCTGAATTCATGTATTGTTTGTTATAACACAAATTTATGACGCACATTCGAGTTTAA</genome_strand>
        <mrna_strand>CCCCAATCCAAAAACCCTAAAAAAGATTGCCAAATTTAAGCAGAGGAAGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACTGGTTATATTTGTTCCTTCTGAATTCATGTATTGTTTGTTATAACACAAATTTATGACGCACATTCGAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393009" ref_strand="+" ref_description="SGN-E393009 [TUS-37-C4](-)">
      <seq>aaaaaactttaaaaaagatttccaaatttaagcagaggaagctcctcaaggttgtttttgaccatttttttaaccgtggaaacaacaattttatctcatagattaatagttagtttgttaggattatgtttttgcctgatccatagtagtatttactggttatatttgttccttttgaattcatgtattaaaaggtatcacacaaatttatgacgcacattcgagtttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="51570" stop="52398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51869" g_stop="52098" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="231" polyA_stop="251"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E393009" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51869" e_stop="52098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACCCTAAAAAAGATTGCCAAATCTAAGCAGAGGAAGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACTGGTTATATTTGTTCCTTCTGAATTCATGTATTGTTTGTTATAACACAAATTTATGACGCACATTCGAGTTTAA</genome_strand>
        <mrna_strand>AAAAAACTTTAAAAAAGATTTCCAAATTTAAGCAGAGGAAGCTCCTCAAGGTTGTTTTTGACCATTTTTTTAACCGTGGAAACAACAATTTTATCTCATAGATTAATAGTTAGTTTGTTAGGATTATGTTTTTGCCTGATCCATAGTAGTATTTACTGGTTATATTTGTTCCTTTTGAATTCATGTATTAAAAGGTATCACACAAATTTATGACGCACATTCGAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229756" ref_strand="+" ref_description="SGN-E229756 [cLEL-4-L43](-)">
      <seq>agctcctcaaggttgtttctgaccatcttcttaaccgtggaaacaacaattctatctcatagattaaatagttagtttgctcttattatgtttttgcttgatccatagtagtatttactggttatatttgttccttctgaattcatgtattgtttgttataacacaaatttatgacgcacattcgagtttaagttgcttttgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="51608" stop="52419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51908" g_stop="52113" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="208" polyA_stop="222"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E229756" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51908" e_stop="52113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATT-AATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACTGGTTATATTTGTTCCTTCTGAATTCATGTATTGTTTGTTATAACACAAATTTATGACGCACATTCGAGTTTAAGTTGCTTTTGTGAAA</genome_strand>
        <mrna_strand>AGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAAATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACTGGTTATATTTGTTCCTTCTGAATTCATGTATTGTTTGTTATAACACAAATTTATGACGCACATTCGAGTTTAAGTTGCTTTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713781" ref_strand="+" ref_description="SGN-E713781 [FB09CF02]">
      <seq>cgtttgagggaggaagcacggaagcactatatgcagatggaaggtgtgtctttgtacaagatggatgggaataagctggatgatctagtctgcgtgaaacatcccctgaaatccgaggcatgaaacaatggcttgatatgatggatccatttgagttgaacctaattagtattttacatgcacaaatacaagggaatcaagagtcgtgttcaacacaccaagcagcttcctcttggagtgtaaactagtaacaaccaccagagtgaactcagatcttcggaagtgcgctgcgaaattgtctgattacctggtgatctgaattactggaggaacgaggaaagaagggaccagtgtccttactcttttcttaattttgtaagcagagaaatctcatgctccatattttacctgattttgttattagggttgcttttattcttctcactgtgaatttgtggttttgaactgtcctatccagtatagtcaaaagggaagggtgaagtagggattgcagatagtgcacggcaaacaccataaaccagcaaatactgtcctgtatagcacggtttttttaaaacgctcttcccctgcaactccaacattcttttgcttctaacatttattttcatttttcattgatgaattatgtacgttatacattttgaatatgaattattgagattgtactttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="53099" stop="51800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52800" g_stop="52095" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E713781" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52800" e_stop="52095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTGAGGGAGGAAGCACGGAAGCACTATATGCAGATGGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATCTAGTCTGCGTGAAACATCCCCTGAAATCCGAGGCATGAAACAATGGCTTGATATGATGGATCCATTTGAGTTGAACCTAATTAGTATTTTACATGCACAAATACAAGGGAATCAAGAGTCGTGTTCAACACACCAAGCAGCTTCCTCTTGGAGTGTAAACTAGTAACAACCACCAGAGTGAACTCAGATCTTCGGAAGTGCGCTGCGAAATTGTCTGATTACCTGGTGATCTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTACTCTTTTCTTAATTTTGTAAGCAGAGAAATCTCATGCTCCATATTTTACCTGATTTTGTTATTAGGGTTGCTTTTATTCTTCTCACTGTGAATTTGTGGTTTTGAACTGTCCTATCCAGTATAGTCAAAAGGGAAGGGTGAAGTAGGGATTGCAGATAGTGCACGGCAAACACCATAAACCAGCAAATACTGTCCTGTATAGCACGGTTTTTTTAAAACGCTCTTCCCCTGCAACTCCAACATTCTTTTGCTTCTAACATTTATTTTCATTTTTCATTGATGAATTATGTACGTTATACATTTTGAATATGAATTATTGAGATTGTACTTTCACAAAAGCAACTTAA</genome_strand>
        <mrna_strand>CGTTTGAGGGAGGAAGCACGGAAGCACTATATGCAGATGGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATCTAGTCTGCGTGAAACATCCCCTGAAATCCGAGGCATGAAACAATGGCTTGATATGATGGATCCATTTGAGTTGAACCTAATTAGTATTTTACATGCACAAATACAAGGGAATCAAGAGTCGTGTTCAACACACCAAGCAGCTTCCTCTTGGAGTGTAAACTAGTAACAACCACCAGAGTGAACTCAGATCTTCGGAAGTGCGCTGCGAAATTGTCTGATTACCTGGTGATCTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTACTCTTTTCTTAATTTTGTAAGCAGAGAAATCTCATGCTCCATATTTTACCTGATTTTGTTATTAGGGTTGCTTTTATTCTTCTCACTGTGAATTTGTGGTTTTGAACTGTCCTATCCAGTATAGTCAAAAGGGAAGGGTGAAGTAGGGATTGCAGATAGTGCACGGCAAACACCATAAACCAGCAAATACTGTCCTGTATAGCACGGTTTTTTTAAAACGCTCTTCCCCTGCAACTCCAACATTCTTTTGCTTCTAACATTTATTTTCATTTTTCATTGATGAATTATGTACGTTATACATTTTGAATATGAATTATTGAGATTGTACTTTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747051" ref_strand="+" ref_description="SGN-E747051 [GI|83318893]">
      <seq>atgacacgaccaaggttcagcaggaaaccagctcttgttcgtcttctctctgttgctgctctcttctccattatacttatcgccattcagtcctctttcttcactggtagccgggctcccgttaatttggatattccgatcttgtcccacttccagtctaaccttcagcaatgcgtcgctaaccgagggctgggattgactgctcatataattgatcattgcagtgtcattctcaagtttccccaaggaactaatagcacttggtataatgagcagttcaagatctttgaaccattggagtacaagtacgacgtttgcgaagcaatacttctgtgggagcagtaccgtaacatgacgacagtgttgacaagagaatatttggattctcggcctgatggatggtttgactatgcagcaaaaaggattgcacagctaggagcagacaaatgttacaatcagactctttgcgaagaacatctcaatctaactttaccagctaagcccccgtttcaccctcgacaattcagaagatgtgcagtcgttggcaattctggagacctcttgaagacgcaatttggagaggaaattgacagtcatgatgcagttatacgagacaatgaggctcctgttaatgagagatacgccaagcatgttggcctgaagagagattttcgcttagttgtgcgaggtgctgccggaaacatgattaaaattctcaacggttctgatgatgaggtgcttataattaaaagtgtcatccatagagacttcaatgcaatgataaagaaaatccggaatccagtctatctgttccaaggtatcgtattacgcagaggtgcgaaaggaactgggatgaaatcaatagaattagcactttccatgtgcgacattgttgacatctatggtttcactgtcgatcctggttacacagaatggactcgatacttttccacaccaaggaaagggcacaacccactccaaggaagggcttattatcaactcttagaatgccttggagtcatacgaatccattctcctatgcgagcaaagagaaagcaagactggtctgatgtgcctagtcgagaaatgataaacaacgctcacagagctgcattgcatttgaaaaagaagcaagctgggcaagaggggggattgggacgatttgttaactgtaaagtatggggcaaatcaggtccctatggcactgggcctgtatctggttccacagatatgacagataccaggaaggagtcaaattacaatcgatgggaaatcatgccttttgagagcttgagggaggaagcacggaagcactatatgcagatggaaggtgtgtctttgtacaagatggatgggaataagctggatgatctagtctgcgtgaaacatcccctgaaatccgaggcatgaaacaatggcttgatatgatggatccatttgagtggaacctaattagtattttacatgcacaaatacaagggaatcaagagtcgtgttcaacacaccaagcagcttcctcttggagtgtaaactagtaacaaccaccagagtgaactcagatcttcggaagtgcgctgcgaaattgtctgattacctggtgatctgaattactggaggaacgaggaaagaagggaccagtgtccttactcttttcttaattttgtaagcagagaaatctcatgctccatattttacctgagtttgttattagggttgcttttattcttctcactgtgaatttgtggttttgaactgtcctatccagtatagtcaaaagggaaaggtgaagtacggattgcagatagtgcacggcaaacaccataaaccagcaaatactgtcctgtatagcacggattttttaaaacgctcttgccctgcaactccaacattgttttgcttctaacatttattttcattgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="67640" stop="51866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67340" g_stop="67235" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67234" i_stop="67144" i_length="91">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67143" g_stop="67073" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="177" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67072" i_stop="66996" i_length="77">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66995" g_stop="66909" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="264" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66908" i_stop="66826" i_length="83">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66825" g_stop="66748" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="342" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66747" i_stop="66665" i_length="83">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66664" g_stop="66573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="434" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66572" i_stop="66461" i_length="112">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66460" g_stop="66259" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="636" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66258" i_stop="64239" i_length="2020">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64238" g_stop="64148" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="727" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64147" i_stop="57324" i_length="6824">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="57323" g_stop="57265" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="786" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="57264" i_stop="53660" i_length="3605">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53659" g_stop="53511" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="935" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53510" i_stop="53243" i_length="268">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53242" g_stop="53161" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="936" r_stop="1017" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="53160" i_stop="53071" i_length="90">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="53070" g_stop="52166" g_length="905"/>
          <reference_exon_boundary r_type="cDNA" r_start="1018" r_stop="1922" r_length="905" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E747051" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1922</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67340" e_stop="67235"/>
          <exon e_start="67143" e_stop="67073"/>
          <exon e_start="66995" e_stop="66909"/>
          <exon e_start="66825" e_stop="66748"/>
          <exon e_start="66664" e_stop="66573"/>
          <exon e_start="66460" e_stop="66259"/>
          <exon e_start="64238" e_stop="64148"/>
          <exon e_start="57323" e_stop="57265"/>
          <exon e_start="53659" e_stop="53511"/>
          <exon e_start="53242" e_stop="53161"/>
          <exon e_start="53070" e_stop="52166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACACGACCAAGGTTCAGCAGGAAACCAGCTCTTGTTCGTCTTCTCTCTGTTGCTGCTCTCTTCTCCATTATACTAATCGCCATTCAGTCCTCTTTCTTCACTGGTTGGTACTACATATCTTCTTTTCCTTAACCCTAATTGTTTGAAAATCCTCTTCGCTAATTTACTATTTTGAATGAATTTGATGCATCCAGGTAGTCGGGCTCCCGTTAATTTGGATATTCCGATCTTGTCCCACTTCCAGTCTAACCTTCAGCAATGCGTCGTAATTATTTTCTGGATCTCCTATATTTTGTTGAAAACTGCACATGTTAGTTGTTTATTCGAATTTCTGCTTTACAGGCTAATCGAGGGCTGGGATTGACTGCTCATATAATTGATCATTGCAATGTCATTCTCAAGTTTCCCCAAGGAACTAATAGCACTTGGGTTTGTCTCTCATCCGTCTCCTACCTGTTGGTTACCTTCTACAAAACACTGAAATGCATTTCCCCATTCATTTTATCTTACAGTATAATGAGCAGTTCAAGATCTTTGAACCATTGGAGTACAAGTACGACGTTTGCGAAACAATACTTCTGTGGGAGCAGGTTCCTCATACTTGTTATTCATGTTAATTAATCATGTTTCCACAACTAGTACATTAAAATATATTGGATTATCTGAAATGCAGTACCGTAACATGACGACAGTGTTGACAAGAGAATATTTGGATTCTCGGCCTGATGGATGGTTTGACTATGCAGCAAAAAGGATCGCACAGCTGTAAGTTATTGGCTTCATCCTCCATTCACCTTCTTAATCAATTAATGATAGATTTTATGTGATTTGATCTTCATATTTTGTTTCATTGTTTCCTTACTTTTCCTGTTTGCAGAGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCCGTTTCACCCTCGACAATTCAGAAGATGTGCAGTCGTTGGCAATTCTGGAGACCTCTTGAAGACGCAATTTGGAGAGGAAATTGACAGTCATGATGCAGTTATACGAGACAATGAGGCTCCTGTTAATGAGGTAAATTAGCTCTTAGTCCGTTGAAAATAAAAATGATTTATGACACAAAGCATTTGCAAGGATAGTATCTCATGTCAGGATCCATGTTGAACACAAAGGTCATTGGATATGTGGAGAAGCATCATAGACACATGTTTGATTTAGTTTTTTCATCTTCAGCTGTCTGATCAATTTTTTAATATCATTCTTTGATTTCTTAATTTATTTGGTCTTAATTTTTTTCAAAAGTTGTCCAATTCATTCAATGTTAAGTAGTTGTCTCAAGAAAAACATACACTGTTAAATGAATTGGAACTGAATAGAGCAATGTCACTTGTGTTCTTCACGCCTCTTTGAAGGCATATTTTTCTTGAGAAAGCAATATAAGAGAGTTAAGAACTAAATATGTTGATACACGCTATGGATGATTGACACTAATGTGTATTTAAGATACCTATCAAAAACTTCTGGGTAGTATCTAGGCAGGTCCTTGTCTTCCACTATCACTTTTTTTATGAAGTTATATGTTTCATTAGAATGCATCAAGGAGATGCGAAGTTACAAGTAACAGAGGGACAAAAAGGAGTATTTAGCTCAGTTCAGCTCCTATAAGAAGTGTTAATCTAGAACTAGGGTGCTAACAAAGTCTAGAAAATGTCCAGCACTAAGGGCTGGGGTCAACTTTGACCAACAAAAATGCTTAAAGTATGCTTTTAGCTTTAAGAGAGTGATTTGGAGTTGAGATGCTATCAAAACATCTCTTGTTCCTTCTGTCCACAAACACCAAAAGATAGTATCAGGAATCATCAACCAGATTTTCTTGATGGACTTATCAACTTCCTATAAACTCCAACACAAAAGTGCCTGTCTCATGTTTTTGGCATAACCCAACTCAGGCCAGAAAGGGTGCAAAACATGTTCCAAACACCAGTAGCTATTCTACAGTGCAAAAACAAGTGATTAATAGATTCCAGATCCTTGTTACATCGGTAACATCTGTTAACCAGCAGAAGTGCTTTCCGTTTAAGGTTGTCCAGTGTTAGACAAGCTTCATATAAGGCAATCTAGTTGAAGCATATGACCTTGATAGTAGCTTGGTCCTTCAAATCAATTTCCATGGCCAAGAATCCAGCACCTGATTTTGCTTTCAGATCTGCCTGTAACAGTCCTCGACTGTGAATATACCCTTACTGCCCCAACACATGGTATCTTGAAGGTCTTCATTTATGTTGCAACTCCACTTTTGCAGACAAATCGATAAAACTATCCATTTCCTAGTCTTGGATATACCTTCTTCAATGCATATCCAGTTGTTGTTACTCCCATTCTGAGCAATTGTGGAGTGGAGTCGTTGTCTTGAGCAATGTTGAAGGTGCTAGGATAGACATCCATGAGTGCTGTGTTGTTAAGCCATTTATGCTTCCAAAACTGATGTGCACTTCATTAGCAGCTACTATCACTAAGATAATATATAAGTCAAATCAACATCCTAAACTTGTGCCCCAATACTCTTGCATATAAAGTGAAACAAAGAACTTAGTAAAGCCACCGGAGTCCTCATTCTATTTTATCTTGCATATTCTTAAAATTCTTATGTCATTATCCACGCTGCTACAAGTATTTCTTTCCATGCAATACTGGTAGAGCATGTGTGGCATTTTTATTATTTGATCAACTCTACTAGAGAATAACTAGTCTGGCTTGTAATTGAGATCTGAGAGTGATGATGACAACTAGAATTTATGTAGTCATTAATATGCATTAATCATAATCTGTTAATAGTTGTATTAACCCAGTAAAAAAAAATCTTCTAGATTTTACATCTAGCTTTATTGTTTGATCAACTCTATTAGAGACTAACTAGGTCTGGCTTGTAATTGAGATCTGAGAGTGATGAAGACTACCAGCATTTATGTATTCATTAATATGCATAATCTGTTAAAAGTTGTATTATCTCAGTAAAAATACCCTTCTAGAGTTCACGTCTATGGTGTCACCAGAATTTGTTGTGTAAATAACTGCTTATGAATATGCTATGCAGAGATACGCCAAGCATGTTGGCCTGAAGAGAGATTTTCGCTTAGTTGTGCGAGGTGCTGCCGGAAACATGATTAAAATTCTCAACGGTTCTGGTAAATTATTGGAACACCTATTTATTTCCTGAACGTTTGATCATATACATCTTGTCTTCTGTGTTTGTTTTTGTTCAGATTTATTTCATGCTTCTTCCCATTTTTCTATATTGACTCAAGACAAAATGATGTCTTCAATTTTTGACGTTCGGTGCCATGTTATGAGCATGAACCAAACAGAACTTCTTTTATGATCTCATTGTTGCCTAATAAACACTACCATTCAGCAATGGTTTTAGGTGTTTTCGGATTATATGAGAATAAAGAAACTCACGTACTTTCCTATTCAAAAAAAAGAAACTCTAGGTGTTCTGAGGCAAAGTATTCACTGTTAGAATAAAAATAGGTTTATACAATCCTTTTAGAATAAGAATAGAAATAAGAACAAGTATAAGAATAGTAATAGGAATCGCAATAGTATTGTAGTACAATTTCAAAAGGATTGTATTGTAGTATCTATAAATAGGGTTTCTGTAGATACAACAGTTCAACAATATTTCTCTCCTATATTTCTCGCATAGAATCAGAGCCTCTACGGTTTTGGTGAACTTCTAACTACCGGAGGGTGGGTAATTATTACCCATATATCTCGCCTATTTGGCTACTGATTATGTTAGCAAAAGTTGGGTCCATCATGTGTCTTTTTTGTGGATAATTTTCTAATATCTTATTTGTGTAGCATCGTGTTATCATCAGAATGAGTATTTTTTTAGATCCGAGTTGTGTAGTATTATGCCATCTTTTTGGTGATTACTTTCTCATATCTGATTAGCGTAGCATCATTTTTTTCCACGGACTACTTTCTTATTTGTGTAGGGTCATGCCATCGCTCCAACCTTACCCACATAATTTCTCTTTTTCAATAGGGTTGTGCCATCAATTTGACTCTATCCATATAATTTCTATTTTTCAATAGTCGAGCCATCATTCCTACCCAGCAAATAATTTATTTCTCAAATTGTGACCACTTTCAGCCATTAAACCTAATACTTCGGTGCATGAGCATGTTCTGGTCAATTTTTCAGTGACTTTTTTGTCTGATATGGACTCATCAATTGATTCCAAGACGATCCATATAATTTTATACCAGATTTTGAGCACTTCCTGACAACCGTTGCATTGTGAAGAAGTCAAGATAGAGCAATACTGCAATTTTATCACTTTCTGTTTTATTGACATTATGCATCAAATGAAATACCAAATTCAGTATTTCATGAGAAGACCAAGCACATTGAGATTGATTGACATTATGTGTCAAATCTAGTATTTTAAATGAGAAGACAAAACACATTAAGATTGATTGTCAATTTTGTGAAGTTGAGTGATCAACTTGCATGTATCTCATGAAGCCCCTCATCGGTCCTTCTATTAGTTACATTTGTAACTGTTAAGAATGACATAAGTCTCACATCGGTGGTTAATGAGATGGGTGAACTCCTTATAACTTATAAGTCTTGGCAATCCTCATCCCTTTGAGTTAGCTTTTGGGGTGTGGGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGATCTTGTCTCACTCGATGTTGGGACCGCCAAAATCAAAGTTGCCCACTCACCAGATGCTGAGCACTGGGCGTGAGGTGGTGTTAAAGAATAACAAAAGTTCCATATCGGTGGTTAATGAGATGAGTGGACTCATAAGGCTTGGGCAATCCTCCTCTCTTTGAGCTCTTGGGGTGTGAGTTAGGCCGAAGACCTAATTTCATAGTAACAAGCTATGTATGTGACTTATATGCACTAGCTTGAGGGCGAATGTCAGAATAAGAATATGTTTATAAAATTTTATTTAGAATACAAATAGGAATAGGAATAAGAATAGTATGTAGTATCCTAGTTGATAAAGGATTATATTGTAGTATCTATTAATAGGGTGTTGTAATAATGCAGATACAACAATTCAATAATATTTTTATCGTATATTTCTCATAATCACGGTATAGGATAAGAAAATACAGACTGCCTATGTTTGCTGCTCTTTGGTGCAAATTTCAAGATATGTGATTTACACAACAATTTTTTTTCGAAAAAGGACCTAAAATACCCTTAAAGTATTAGATATAGGACAAATCTACATTTCATTCACGTATTAACTTTAAAATACCCTTCTTATCCACCTATTGGCTCCAAAATACCCTTATCATCTACTTTTGAGTTCAAAATTGACAACTTATTTAACAATTTTAAATTTAAACTATTTAAATATTTTTTTTAAATATATGGCGCTCAATTATTTGTTATAATTTAACTTATTAATATTATTTATAAATCAATCCACTACCTACTTATTACTAATTGAATCCACCCAATTAATAAATCCGCTCCATTACTAATGCAACAATAGGATAACTACTGTCAATGTGTGTGTCTAAAAATTTGAGACAAAAATGTCCATAGAAGTACGTTATTATACATTCAAGTGGGGTGTTCATGGGTCGGTTTGGATAGATTATTGGTTAAAACAAAAACCAAACCAACTTGATCGATTTTTAAAAAAAATCAAAACCAAGTCAAATATAATATACATGTATCGGTTTGGTGGTAACTGATTTCGGTTTGGTTCGGTTCGGTTATTAACCATACGCAAAAATAAAAGAAACAATTCATTCAAAATGTGAAAAAAGTGACAACAATCTATTCAAAACAAAAAAATAGTTAGAATGACTTGAAGTTACTCGACTTTCGATCACTGAATTTACTATCAATAAAGCTTTAAAATTTACTATATTGGCCTAGAAGGAAGAGACTAACATTTTTAGTCCGGTAAAGAATTGTCATGGATACTCATACACATTAAATCAATTAGATAAATATTTTCATCTTTGGGCATTTTTGCTTTCAGTATGTAAATTATGAAGAAATTATGATGAAAAGATATATAAGATATTTAAAATTGTTTATAAAAAGAATATGTTAAGTGTGTATATAATTAATCAGTTTGGCTCGATTATTTCTTCGAATTTTTCAAATAAAACCATAACCAAATCAAATGCTGTCGGTTTTTCGAAAATCTAAAATCAAACAAAACCAAATCCAAAAAGAATCAATTTTATTTTGTTGATTTGGTTTAGTTTTTCAATTTGAATTGATTTTTATCCAAACCGTGAACACCCCTACATTCAAGTCCTCAATCAAAAGTTCAAACATATTATAATTCAACTGTCTAAATAAAAAATTACCGATAAACTTAAAAGTCTGACTATGTCAATCTTAATTATTCCTTTTGTCTCAATTATGTGATGGTACTTAATAGCTAACTTTTTTAAAAATAATATATTAAAGTTCTAATATTTAAAACAAATCATAAATATTTAAAAAGTATATTTAAAGAAGTGCAAGAATTAATTGCGGATGTACTAATTCTTTATCTTTGGTCATAAATTTCGAATTCAAGCTTGAAAGAGAATCCTATTGAAAGTTTCCTCCTAAATAAGCGGATCAACCTAAATTTAATTGGGGCTTCAATTCAGACTCGAATAATTTTGAAAGTTTATTTTTGTATCTGTAATTTTGTCGTGTTTTAGTAGTGTTTAGGGCAATTTTGATATTAAAATTGGTTTATTAATTGGGTGGGTAGTGAGTTGGTTTATAAATGATGCTAATAAATTAAATTATAATCAATAGTTGAGCGCCATGTATTTTAAAAAATTATTTAAACAGTTTAAATTTAAAATCGCTAAATATGTGGTCAAATTTTGAATCCAAAGATGGATGCCAAGGGTAATTTGGAGCCAATAAGTGGATGAGAAGGGCATTTTGGAGCCAATAGGTGAATGAAGGACAATTTTGTACCAATTCTAACACTTTAAGGGTATATTAGGCCCTTTTCCATTTATTTTTTTTTAAAAAGAACATGTATTCTATGTTTCACACATTTTAAACTTCATTAGCTTTGTTTGCGACTGAGGCGTAATAATTGTTTTTACTTATTTATATTTTGTTGAACTTCATCTCTCAACAGGGATAGCTCCGTATAAAAAAAATTCCTTCTTTTGCTTTTTTCTTTTCGTTCCCCTTTTTGGTGTAATGGACTGCCTACTTTTGTATATTCTAATCACCTGTTTGTATCTTATCTTTCAATAACACATTTTGCTTACCGATCAAGCAAAAAAAATACACTACCATTCAGTGGCAATGATTGGTTTTTTATTTTGATGTCGTATATTGATAATGTCCGTTTTTGAGTATTTTCGTCTAAATGTGGTTTTGAAAACCTCTAGAATTCTTATTCGTTTTGTTATTTAATATGTAATGTAGGGTAGTTCATGCTTGTTGATATGATTATATGAGTATGTCATATTAGGATGTGAAGTGTGCTTATTGTGATGAGCGCACTCTGATGCATTTCTATAAAAAGCCTTTAGCACCAGTAGTTGGGTCTTTATACTGCATATTAGCAGTGTTGTGTACATGAGTTGTGTTATTGAAAGTCGAGCTAGAAATAGTTTCTCGTGATGAGGTTGTTCATTTATGTGTGACCAATCATCATTGCTATATACAAATTACTGGTTTTTCGAACATGATTACTTATATCTTAGGGATTCAAGTTTTTATAGCCCTTTAGCTTTTCGAAAGTGTCAACCTAGTCCTTTAAATGTTGTTAGATTCAACAAACATTCTATCTTTGGTTTTGCCCTTCTGTTACGAAATGCCAATAGACCCTCAATTTAGGGGGGCAAAACAATGTCTCTAGTCTCTATACCCAAAATAATATTGTTTGCTCTTTTTCCCAACAAATGGATAAATAAACAAGAAAGACTTAATTTCTTGTTGATGATTTAACTAAGTTGTTGGTGGTTTCTTGTTTCTTCTTGTTTTCTGTTCTTACTTCTTCTGTCGGTTACCTCAGAGATTTTTTAATCTATACTTGGGTGTTTTTTGGAACTTAGGGAAAGAGTGTCGGCTACGCCCACTCTCTTAGCCTGAATGGTTCAGCTAAACCAAAAGTTGCTTATGGGAGGAGGGGGAGAGGAACCACAATAATTGTCAAGCCTTATATGTTTTTCTTGGTGTGGTTTCAACTTATTACTATTTTTTGGTTTTGGTTGAACTTCTCAGATGGTCCCAAAAGCTTTTGACACTAGTATTTATATCATCCAAACAATTCTTGCAGTCTTGACTCTAGCAGGCATAAGTGTTGAAGGAAGGAGCAAGATAGTTAACTGTTACATATAGATGATAGCTCCTTATAGGGGTGTCAAATGGGCGGGTTGGGTTAAAATTAAAATATTAAAATGGGTTGAAATAGAAATCGGGTTGCGTCTTGACCCACCCAAGTTTACTTTGTGCTCAAATAGGTTGGGTTCACATGGGCTAAAAAATGGGTTGGGTCTTGACCCACCCAATTTGACCCGATTAATTTCAATAATTTTACATAGTAACATTTAACTTTTACAATCACAATGCGAATTTTAGCTCAAGATTTTTTTTAAAAAAAGTAACAAATGGATAGATAAAGAAAACATTTTTCAAAACTCTATTTCATTATTAAATTTTTTTTCTTACCTTGTACCCGACCCTTCCCATTCGAAAAATAAAATTAAAATTTTTACATTCTTATTTTTTCAATCCTTTATCCTACCCCTACCCCCCCAAACCCAAATGAAAAAATAAAAAGTTTAAAAATTATTTTTGAAAAATGTTTCAATTTTTAAGATTTTTTTTTACCTCACCCAACCCTATCCCCTACCCCTTCGAAAATAATTGCTTTTAAAAATATTTCAATTTTTTCGCCCCACCCCCACCCCCACCCCCCATCAATTTTATTTAAAAATATTTTTAGGAAATATATCCCTAAGTTTGACCCAACCACCCAGGCTATCCTTGTCAATTTTTTTTAAAAAAAATTGTTTTTGAATTTTTTTTTTCATTTTTATGCCGACTCGTTACCCTCCTCTCTCCCCCCCCCCCCCCCCCACCTAGGCCATTCCCGTCAAAAAATATTTTTACGGCTACCTCTACCCCTCCCCCCTTCCCCCAACCTAATAAAAAAAATTGAAAAATATTTCAAATTTTAAATAATTTCATTTTTTACGCCCCCACCGGCGACCGCAAAGTTCCCGGGTCGGATTTTGGAACGATCATCAGGGTCTTGTCCTAGTTTGGGTGTCGGGGTCGGATTCTAGATCAATTATCAGGGTTGATTTTCTGATAAAAAATTAATCCTAAAGAGTATTTTCTAGTCTCAAGCCAAAAATAAAAGATATTTTATGAAAAATATCATTTACCAACCAAACATGAGATAATAAATTAGAAAGTCCACTTGTTTTCCAAGAAAACATTTTCTAGGAAATTCCTTCATACCCATCACACCCAGAGATGTTGAGCAAAAGAGGAGAAAGATGATAGTTCTAATTAAGTTTAAGAAGAAAATTGATTTCAGTGCCCCTCTCTATTTAGCATAGGTGATAGGACCATGTTTGTCAAGTCCGTTAGCATTTCTTAGCAGATAGCTCTTTGATGACTCTGAATAGCTTGATGGGCTATTAGTTTTTGGTTAATAAGTCTTTGCTATTTCTGTTCAAATGCTTCCAGTTCAGTTATTTTTTATTAAATATAGGGTCAGGGTAATTATTATCCCTTTTAGTTGTACTGTACGGGTAATTTTGATATTAGCATTTCATATTAGTCAGTCAGCTACATTACTTGTCCTAATGAAGAGCATCTGAAAATTAGCAGTGAACTTTCTACTGCTCTTGTTATTATTGTCAGCAATGACTTCGCTGTGATTTGGTATTATTGGAAGCAATACTCATGAAGCTTCTAATAATTTGTTGCTATTCCTTCTTTACTTTCAGATGATGAGGTGCTTATAATTAAAAGTGTCATCCATAGAGACTTCAATGCAATGATAAAGGTAATGTATCATTCAGATGAGTGGTAGTATCTTTTTACTTCTATGTTCAGATGAATGCTTTTACTAATTTGTTTCTCCGTTAAATCTTTCTTCTTGAGGTTGCTATTGTTAGTTTAGTTGTTCTCAATTTACATTTTCAATCAAGTGCTACCCGTGAATGTTGGGTTGGACTTTAGTTGATATTGTTTTCCGGGAATTTGTTGAAGATTACAAGCTAAGGATACATTTCTATTATAAAAATGAATGCATATCTACATTTTCAAAATATTAATCCTCCCCCCTCCCCCTCTCCCACAAATTGATATGAGTGGAACCATGCATAACAGCTGGATCTTTCTTTTCCATGAAGCATGGGACTCTTGCTCTCTAAGTTGTTCGGACTCTTCAATTTTGGTGCTGCACCTGCGTCAACAAGACATGGGTGTGGTGTGGGATCCGTGTTCGATTTGGTCAACCAATTTTGGGTACTTTGACCAAAAGTCGATAGGGGAAGTTTGGGCAGTTTTCTAATGGTTTCTGTAATCAATACAAAAACTAAGGTGAAATTGAAGAAAATGGAATACCTTTTATTTATAAATTTGTATGTACCTCCTTTCCCTTTAATCTCCTTCCAGGATTCTCCTCAAGTTCTCCACATAATATCTCATAATTTAAGTTTTATAACTCTATTTTTAGGTATTTTAATTATTTTTAGGCAAATCTCCGCACTCGTATCCATATATGGATATGAATCTTAAAAATTAGATCATGAAAGATCTGACCACTAAATCCACACTTGTATTGGACACACCTGCACCCGAGTCCGAGCAACTTAGCTTTCTCTATCCTTTGTATGTGCTAATTAAAATGAAATGATTTTTTATTTATTTTTACTTATGTTGAGTTTTATGGCAATCACCTTACTTTGCATCTTATAACCATGGCTGTGTATCCTTAATATACAACACGTTGAGGAAACTCTGATGGATTCAAGCTGTAGCATTGTAGGTGGTGAAATAGAGAATTCTTTAGGATTCTGAATATTAGTGTTGGTGAGAATCATCCTAAACCTTAGGGGTATAGCATGGACGTTGCCAGGCAAGATAACAGAGGCTCTTAGCTGCAGGGAGGGAACATATTCACATGCAAACGATAGGAGTAGATGGAGAATTATCCCGGCTTGTATCCAGTGAACAATCTGGAAGGAAAGGAATTCCTGATGTTTTGAAAGTTTAGAGAATGATGTGCAGATGATTTAGTTGAATTTCATCTTACTGCTATGTTTTTGGTGTAATCAGATTTACTAATGATACTGTGTCTATCATAGATGTTCTGGATCCATTATAGCTTAGAGAGGGAAGACACTAGAGCTCTATGGTAAATATGGTTTCCGTAAATAGGGAGGGTCGAGTTTATCCAGACCAACTGTCCCATCACCTTGTCGTAAGGGTGAACATTCAGTATTCCCAAAGTTTGGATTCACTAATTCAGTAATCGGTTATTGAAACTAGATACCAAATACCAACTTCTTAGTTCAGTCTGGTAAATCAAACTTTGGTCATTGAGTTTTGGTACAATAATTCGGTAATACTGACATGAACTTCATGTCAGTTCATCCAAATATCATCTTCCAATCTTAACAATGGATCGAACAAAATTAACAAATAATCAACTCAACAAATGATCACTAAAATATGATGAAGCTCGGTGGAACCAATAATCAAGAGAATTTGTGAAATTTTAACCATCTATAACAGTACCAAACCCAATCAATCGAAAGGCAATATCAGATTAAGTACAAACAATTTCAGATATATGGTATATATTGATATTAATGTTTCATACTGAACCCTAATATCATAATTCTTAAATTTCTCTTGAAAATCTTACCGAATTATCGAAACTCAATTCAGTTGAGTGATTCAGAGATTTATGCACAACCCTTCTTCGGTTAAGAAAAACTAATGCCTCAAATATGCAAATCACACTTAAACACATTATGAACATTTTGGAACACTCAAAACACCAATATGAATTCGTCTCACATTTTTTACCATGGCCAAATCTTAATTCCTGCTTGATTCGGTGTATATTTTAGCATATCTCTGATTAGTTTACAAATCTGCTTTAATGAATCTAGTGAATGATGGTAGACTAGAGTCATATGACCTCGGGCAAGGGAAAAAGGCAGGGGCAGTAATTGGGTTAAGAGAGTTTCTAGGCTGAGAGTAGGGTCTTGGAACATTGGACATTGATGAGGGAGTCAATAGAATTAGTGAAGATTCTCAAGAAGAGGGAGATTAATATAACTTGTGTCTAGATAACCAAATGGGTAGGAACTAAGGCTCGAGATGTGAATGCGTTTAAATTGTTGTACTCAGGAGTCTCGAAGATCAGTAATAGAGTGAACAATCTAGTAGATATAAATCTAAAGGAGCAAGTGGTAGACATTAGGATGATCAGCGATAGGATGATGTCGATTAAACTAGTTGTTACCGGTCTTACTTTGAATATTATTAGTGTTACACACTAAAAGCAGACATGGACGAGGAGGTTAAGAAGAGCTTTTGGGACGATTTAGTTGAGGTTGTGAGAGGTATCCACACACTGAGAAGCTATTCATCGGAGGAGATTTTAGTAGCCACGTCGAGACAACTCCAAAAGGCTATATGATGATGTGCATGAAGGTTCTGCTTTTGGGGATAGAAACGAAGAAGAAGCCTCACTTTAGAATTATGCAAAAGCTTTTTAATTGGAGATTGCTGACTCTAGTTTCCCTGAAGGACTAACACTTCGTGACATTCCGGAGCATGTTGGCTAAGACTCAAATAGACTACATGCTCCTTAGGAAGGGTGATAGAGGTCTTTGTAAGGAATGCAAATCCCGAGTGAGAATCATACAACCCAGCATAAGCTCTTGGCTATGGATTTGAACCCACCACCACTCAACCAAAAAAGTTGATTCTGAACTTTGTTTGTGAAGGAACCGAACTTTGACGGCCAAACCGTTTTTATGCGCCGCTTTACCCTTAAAGGAAAATGAGTTTTGCTCCTTTGGGTGCTAGGTGCTCCTGTGGTTCGCGAGAAGGAGAAAGGATGTTGCATTTAGCACACGAGGATAAATAGAGTCTTCGTCTATGCATGAATTGCAACAAAAAATAAATAATAAAATAAAGCTGAAACAGAGGTATAATGGGGGACAGGTAAGGTCAACAAGGTTGGATAGTGTGTACGCGATGTCGGTGAGATGAAAATTGTCGAACATGATTGCAGGATGGATGATTAAGTAGTTTTCTTTAGAAAACAGAGTAGCTTCACTATCATGGGTAGATGCTGTTAATTGAAGAATGTCTTGTGCTGATGCAGTGCTACATTGCTAATTGATTCGAAGTATTGGCTTAAGGGATTTGTTTATTTATCTTCAGACGTTGATCCTGGTTACACTTGTAATATTTCATGGCATGTTGGAAATGAATTTTAAATGTATGTTTGATTGAAAAAGAAGCCCTACTATTATTTTATGACGTGGTAGAATCTGATTTTTTTGTAAGGTGGTGGGAATCTGATGCTTTGTGACATCAAGTTCATTTGAAGAGAATATGATTTTCCTCCATTATTTATCGCAGAAAATCCGGAATCCAGTCTATCTGTTCCAAGGTATCGTATTACGCAGAGGTGCGAAAGGAACTGGGATGAAATCAATAGAATTAGCACTTTCCATGTGCGACATTGTTGACATCTATGGTTTCACTGTCGATCCTGGTTACACAGAATGGTAATGTTCTATTATGCTCCTTTTCTTCATTGTTACTTCTGCTTTTACTAGACGACAAAATAAATGCACATTTAAAAAACTTGGTATCGGGTTTTCTCTTTGCAACTCTATCCAATGTTGAAATATTACCATCTTTCTGGAATATTCGACACTTCCACTTGAATTCCATCTTCTAGTTTACCTTTCTTAACTTTTGCATGCAATTTCTTACATCTAATGACCATTAAACATTATCTCTGTGTGGCTATTGGGGAACTTTGTTGTATAGGACTCGATACTTTTCCACACCAAGGAAAGGGCACAACCCACTCCAAGGAAGGGCTTATTATCAACTCTTAGAATGCCTTGGAGTAAGGACACTGGATTAATGCAGTTAAAAGTTCATTTTTCAATTTGTTCATTTTTTTGTTTGATGCTCTCACTAAGAAATCATATTTTAGGTCATACGAATCCATTCTCCTATGCGAGCAAAGAGAAAGCAAGACTGGTCTGATGTGCCTAGTCGAGAAATGATAAACAACGCTCACAGAGCTGCATTGCATTTGAAAAAGAAGCAAGCTGGGCAAGAGGGGGGATTGGGACGATTTGTTAACTGTAAAGTATGGGGCAAATCAGGTCCCTATGGCACTGGGCCTGTATCTGGTTCCACAGATATGACAGATACCAGGAAGGAGTCAAATTACAATCGATGGGAAATCATGCCTTTTGAGAGCTTGAGGGAGGAAGCACGGAAGCACTATATGCAGATGGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATCTAGTCTGCGTGAAACATCCCCTGAAATCCGAGGCATGAAACAATGGCTTGATATGATGGATCCATTTGAGTTGAACCTAATTAGTATTTTACATGCACAAATACAAGGGAATCAAGAGTCGTGTTCAACACACCAAGCAGCTTCCTCTTGGAGTGTAAACTAGTAACAACCACCAGAGTGAACTCAGATCTTCGGAAGTGCGCTGCGAAATTGTCTGATTACCTGGTGATCTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTACTCTTTTCTTAATTTTGTAAGCAGAGAAATCTCATGCTCCATATTTTACCTGATTTTGTTATTAGGGTTGCTTTTATTCTTCTCACTGTGAATTTGTGGTTTTGAACTGTCCTATCCAGTATAGTCAAAAGGGAAGGGTGAAGTAGGGATTGCAGATAGTGCACGGCAAACACCATAAACCAGCAAATACTGTCCTGTATAGCACGGTTTTTTTAAAACGCTCTTCCCCTGCAACTCCAACATTCTTTTGCTTCTAACATTTATTTTCATTTTTCA</genome_strand>
        <mrna_strand>ATGACACGACCAAGGTTCAGCAGGAAACCAGCTCTTGTTCGTCTTCTCTCTGTTGCTGCTCTCTTCTCCATTATACTTATCGCCATTCAGTCCTCTTTCTTCACTG...........................................................................................GTAGCCGGGCTCCCGTTAATTTGGATATTCCGATCTTGTCCCACTTCCAGTCTAACCTTCAGCAATGCGTC.............................................................................GCTAACCGAGGGCTGGGATTGACTGCTCATATAATTGATCATTGCAGTGTCATTCTCAAGTTTCCCCAAGGAACTAATAGCACTTGG...................................................................................TATAATGAGCAGTTCAAGATCTTTGAACCATTGGAGTACAAGTACGACGTTTGCGAAGCAATACTTCTGTGGGAGCAG...................................................................................TACCGTAACATGACGACAGTGTTGACAAGAGAATATTTGGATTCTCGGCCTGATGGATGGTTTGACTATGCAGCAAAAAGGATTGCACAGCT................................................................................................................AGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCCGTTTCACCCTCGACAATTCAGAAGATGTGCAGTCGTTGGCAATTCTGGAGACCTCTTGAAGACGCAATTTGGAGAGGAAATTGACAGTCATGATGCAGTTATACGAGACAATGAGGCTCCTGTTAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACGCCAAGCATGTTGGCCTGAAGAGAGATTTTCGCTTAGTTGTGCGAGGTGCTGCCGGAAACATGATTAAAATTCTCAACGGTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAGGTGCTTATAATTAAAAGTGTCATCCATAGAGACTTCAATGCAATGATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCGGAATCCAGTCTATCTGTTCCAAGGTATCGTATTACGCAGAGGTGCGAAAGGAACTGGGATGAAATCAATAGAATTAGCACTTTCCATGTGCGACATTGTTGACATCTATGGTTTCACTGTCGATCCTGGTTACACAGAATG............................................................................................................................................................................................................................................................................GACTCGATACTTTTCCACACCAAGGAAAGGGCACAACCCACTCCAAGGAAGGGCTTATTATCAACTCTTAGAATGCCTTGGA..........................................................................................GTCATACGAATCCATTCTCCTATGCGAGCAAAGAGAAAGCAAGACTGGTCTGATGTGCCTAGTCGAGAAATGATAAACAACGCTCACAGAGCTGCATTGCATTTGAAAAAGAAGCAAGCTGGGCAAGAGGGGGGATTGGGACGATTTGTTAACTGTAAAGTATGGGGCAAATCAGGTCCCTATGGCACTGGGCCTGTATCTGGTTCCACAGATATGACAGATACCAGGAAGGAGTCAAATTACAATCGATGGGAAATCATGCCTTTTGAGAGCTTGAGGGAGGAAGCACGGAAGCACTATATGCAGATGGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATCTAGTCTGCGTGAAACATCCCCTGAAATCCGAGGCATGAAACAATGGCTTGATATGATGGATCCATTTGAGTGGAACCTAATTAGTATTTTACATGCACAAATACAAGGGAATCAAGAGTCGTGTTCAACACACCAAGCAGCTTCCTCTTGGAGTGTAAACTAGTAACAACCACCAGAGTGAACTCAGATCTTCGGAAGTGCGCTGCGAAATTGTCTGATTACCTGGTGATCTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTACTCTTTTCTTAATTTTGTAAGCAGAGAAATCTCATGCTCCATATTTTACCTGAGTTTGTTATTAGGGTTGCTTTTATTCTTCTCACTGTGAATTTGTGGTTTTGAACTGTCCTATCCAGTATAGTCAAAAGGGAAAGGTGAAGTACGGATTGCAGATAGTGCACGGCAAACACCATAAACCAGCAAATACTGTCCTGTATAGCACGGATTTTTTAAAACGCTCTTGCCCTGCAACTCCAACATTGTTTTGCTTCTAACATTTATTTTCATTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241566" ref_strand="+" ref_description="SGN-E241566 [cLED-28-P20]">
      <seq>acatgcacaaatacaagggaatcaagagtcgtgttcaacacaccaagcagcttcctcttggagtgtaaactagtaacaaccaccagagtgaactcagatcttcggaagtgcgctgcgaaattgtctgattacctggtgatctgaattactggaggaacgaggaaagaagggaccagtgtccttactcttttcttaattttgtaagcagagaaatctcatgctccatattttacctgagtttgttattagggttgcttttattcttctcactgtgaatttgtggttttgaactgtcctatccagtatagtcaaaagggaaaggtgaagtatggattgtatatagtgcacggcaaacaccataaaccagcaaatactgtcctgtatagcacggattttttaaaacgctcttgccctgcaactccaacattgttttgcttctaacatttattttcattgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="52925" stop="51866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52625" g_stop="52166" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E241566" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52625" e_stop="52166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGCACAAATACAAGGGAATCAAGAGTCGTGTTCAACACACCAAGCAGCTTCCTCTTGGAGTGTAAACTAGTAACAACCACCAGAGTGAACTCAGATCTTCGGAAGTGCGCTGCGAAATTGTCTGATTACCTGGTGATCTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTACTCTTTTCTTAATTTTGTAAGCAGAGAAATCTCATGCTCCATATTTTACCTGATTTTGTTATTAGGGTTGCTTTTATTCTTCTCACTGTGAATTTGTGGTTTTGAACTGTCCTATCCAGTATAGTCAAAAGGGAAGGGTGAAGTAGGGATTGCAGATAGTGCACGGCAAACACCATAAACCAGCAAATACTGTCCTGTATAGCACGGTTTTTTTAAAACGCTCTTCCCCTGCAACTCCAACATTCTTTTGCTTCTAACATTTATTTTCATTTTTCA</genome_strand>
        <mrna_strand>ACATGCACAAATACAAGGGAATCAAGAGTCGTGTTCAACACACCAAGCAGCTTCCTCTTGGAGTGTAAACTAGTAACAACCACCAGAGTGAACTCAGATCTTCGGAAGTGCGCTGCGAAATTGTCTGATTACCTGGTGATCTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTACTCTTTTCTTAATTTTGTAAGCAGAGAAATCTCATGCTCCATATTTTACCTGAGTTTGTTATTAGGGTTGCTTTTATTCTTCTCACTGTGAATTTGTGGTTTTGAACTGTCCTATCCAGTATAGTCAAAAGGGAAAGGTGAAGTATGGATTGTATATAGTGCACGGCAAACACCATAAACCAGCAAATACTGTCCTGTATAGCACGGATTTTTTAAAACGCTCTTGCCCTGCAACTCCAACATTGTTTTGCTTCTAACATTTATTTTCATTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250683" ref_strand="+" ref_description="SGN-E250683 [cLEG-7-P18]">
      <seq>agataccaggaaggagtcaaattacaatcgatgggaaatcatgccttttgagagcttgagggaggaagcacggaagcactatatgcagatggaaggtgtgtctttgtacaagatggatgggaataagctggatgatctagtctgcgtgaaacatcccctgaaatccgaggcatgaaacaatggcttgatatgatggatccatttgagttgaacctaattagtattttacatgcacaaatacaagggaatcaagagtcgtgttcaacacaccaagcagcttcctcttggagtgtaaactagtaacaaccaccagagtgaactcagatcttcggaagtgcgctgcgaaattgtctgattacctggtgatctgaattactggaggaacgaggaaagaagggaccagtgtccttactcttttcttaattttgtaagcagagaaatctcatgctccatattttacctgattttgttattagggttgcttttattcttctcactgtgaatttgtggttttgaactgtcctatccagtatagtcaaaagggaagggtgaagtanggattgcagatagtgcacggcaaacaccataaaccagcaaatactgtcctgtatagcacggtttttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="53152" stop="51925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52852" g_stop="52225" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E250683" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52852" e_stop="52225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACCAGGAAGGAGTCAAATTACAATCGATGGGAAATCATGCCTTTTGAGAGCTTGAGGGAGGAAGCACGGAAGCACTATATGCAGATGGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATCTAGTCTGCGTGAAACATCCCCTGAAATCCGAGGCATGAAACAATGGCTTGATATGATGGATCCATTTGAGTTGAACCTAATTAGTATTTTACATGCACAAATACAAGGGAATCAAGAGTCGTGTTCAACACACCAAGCAGCTTCCTCTTGGAGTGTAAACTAGTAACAACCACCAGAGTGAACTCAGATCTTCGGAAGTGCGCTGCGAAATTGTCTGATTACCTGGTGATCTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTACTCTTTTCTTAATTTTGTAAGCAGAGAAATCTCATGCTCCATATTTTACCTGATTTTGTTATTAGGGTTGCTTTTATTCTTCTCACTGTGAATTTGTGGTTTTGAACTGTCCTATCCAGTATAGTCAAAAGGGAAGGGTGAAGTAGGGATTGCAGATAGTGCACGGCAAACACCATAAACCAGCAAATACTGTCCTGTATAGCACGGTTTTTTTAAA</genome_strand>
        <mrna_strand>AGATACCAGGAAGGAGTCAAATTACAATCGATGGGAAATCATGCCTTTTGAGAGCTTGAGGGAGGAAGCACGGAAGCACTATATGCAGATGGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATCTAGTCTGCGTGAAACATCCCCTGAAATCCGAGGCATGAAACAATGGCTTGATATGATGGATCCATTTGAGTTGAACCTAATTAGTATTTTACATGCACAAATACAAGGGAATCAAGAGTCGTGTTCAACACACCAAGCAGCTTCCTCTTGGAGTGTAAACTAGTAACAACCACCAGAGTGAACTCAGATCTTCGGAAGTGCGCTGCGAAATTGTCTGATTACCTGGTGATCTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTACTCTTTTCTTAATTTTGTAAGCAGAGAAATCTCATGCTCCATATTTTACCTGATTTTGTTATTAGGGTTGCTTTTATTCTTCTCACTGTGAATTTGTGGTTTTGAACTGTCCTATCCAGTATAGTCAAAAGGGAAGGGTGAAGTANGGATTGCAGATAGTGCACGGCAAACACCATAAACCAGCAAATACTGTCCTGTATAGCACGGTTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691136" ref_strand="-" ref_description="SGN-E691136 [LH_Ea05F06]">
      <seq>agggggattgggacgatttgttaactgtaaagtatggggcaaatcaggtccctatggcactgggcctgtatttggttccccagatatgccagatcccaggaaggagtcaaattccaatcgatgggaaatcatgccttttgagagcttgagggaggaagcacggaagcactatatgcagatggaaggtgtgtctttgtacaagatggatgggaataagctggatgatttagtttgcgtgaaacatcccctgaaatccgaggcatgaaacaatggcttgatatgatggatccatttgagttgaacctaattaatattttacatgcccaaatccaagggaatcaagattggtgttcaacacaccaagcagtttccttttgggagtgtaaactagtaacaccctccccagtgaactcagattttcggaagtgcactgggaaattgtttgaatccctgatgatttgaattactggaggaacgaggaaagaagggaccagtgtccttactttttttttaaattcagtaattttgtaagcagagaaatttcatgctccatattttacctgattttgttattagggttgcttttatttttctcactgtgaatttgtggttttaaactgtcctatccagtatagtcaaaagggaagggtgaagtagggattgcagatggtgcaggtccacccccataaacgggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="53241" stop="51953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52942" g_stop="52277" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="731"/>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E691136" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691136" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52942" e_stop="52277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGGATTGGGACGATTTGTTAACTGTAAAGTATGGGGCAAATCAGGTCCCTATGGCACTGGGCCTGTATCTGGTTCCACAGATATGACAGATACCAGGAAGGAGTCAAATTACAATCGATGGGAAATCATGCCTTTTGAGAGCTTGAGGGAGGAAGCACGGAAGCACTATATGCAGATGGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATCTAGTCTGCGTGAAACATCCCCTGAAATCCGAGGCATGAAACAATGGCTTGATATGATGGATCCATTTGAGTTGAACCTAATTAGTATTTTACATGCACAAATACAAGGGAATCAAGAGTCGTGTTCAACACACCAAGCAGCTTCCTCTT-GGAGTGTAAACTAGTAACAACCACCAGAGTGAACTCAGATCTTCGGAAGTGCGCTGCGAAATTGTCTGATTACCTGGTGATCTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTAC-----TCTT---TTC-TTAATTTTGTAAGCAGAGAAATCTCATGCTCCATATTTTACCTGATTTTGTTATTAGGGTTGCTTTTATTCTTCTCACTGTGAATTTGTGGTTTTGAACTGTCCTATCCAGTATAGTCAAAAGGGAAGGGTGAAGTAGGGATTGCAGATAGTGCACG</genome_strand>
        <mrna_strand>AGGGGGATTGGGACGATTTGTTAACTGTAAAGTATGGGGCAAATCAGGTCCCTATGGCACTGGGCCTGTATTTGGTTCCCCAGATATGCCAGATCCCAGGAAGGAGTCAAATTCCAATCGATGGGAAATCATGCCTTTTGAGAGCTTGAGGGAGGAAGCACGGAAGCACTATATGCAGATGGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATTTAGTTTGCGTGAAACATCCCCTGAAATCCGAGGCATGAAACAATGGCTTGATATGATGGATCCATTTGAGTTGAACCTAATTAATATTTTACATGCCCAAATCCAAGGGAATCAAGATTGGTGTTCAACACACCAAGCAGTTTCCTTTTGGGAGTGTAAACTAGTAACACCCTCCCCAGTGAACTCAGATTTTCGGAAGTGCACTGGGAAATTGTTTGAATCCCTGATGATTTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTACTTTTTTTTTAAATTCAGTAATTTTGTAAGCAGAGAAATTTCATGCTCCATATTTTACCTGATTTTGTTATTAGGGTTGCTTTTATTTTTCTCACTGTGAATTTGTGGTTTTAAACTGTCCTATCCAGTATAGTCAAAAGGGAAGGGTGAAGTAGGGATTGCAGATGGTGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258463" ref_strand="+" ref_description="SGN-E258463 [cLEG-47-N9]">
      <seq>tgccggaaacatgattaaaattctcaacggttctgatgatgaggtgcttataattaaaagtgtcatccatagagacttcaatgcaatgataaagaaaatccggaatccagtctatctgttccaaggtatcgtattacgcagaggtgcgaaaggaactgggatgaaatcaatagaattagcactttccatgtgcgacattgttgacatctatggtttcactgtcgatcctggttacacagaatggactcgatacttttccacaccaaggaaagggcacaacccactccaaggaagggcttattatcaactcttagaatgccttggagtcatacgaatccattctcctatgcgagcaaagagaaagcaagactggtctgatgtgcctagtcgagaaatgataaacaacgctcacagagctgcattgcatttgaaaaagaagcaagctgggcaagaggggggattgggacgatttgttaactgtaaagtatggggcaaatcaggtccctatggcactgggcctgtatctggttccacagatatgacagataccaggaaggagtcaaattacaatcgatgggaaatcatgccttttgagagcttgagggaggaagcacggaagcactatatgcagatnggaaggtgtgtctttgtacaagatggatgggaataagctggatgatctagtctgcgtgaacatcccctgaaatccgaggcatgaaacaatggctggatatgatggatccatttgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="64482" stop="52343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64182" g_stop="64148" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64147" i_stop="57324" i_length="6824">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57323" g_stop="57265" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="94" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57264" i_stop="53660" i_length="3605">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53659" g_stop="53511" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="243" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53510" i_stop="53243" i_length="268">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53242" g_stop="53161" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="325" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53160" i_stop="53071" i_length="90">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53070" g_stop="52643" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="753" r_length="428" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E258463" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64182" e_stop="64148"/>
          <exon e_start="57323" e_stop="57265"/>
          <exon e_start="53659" e_stop="53511"/>
          <exon e_start="53242" e_stop="53161"/>
          <exon e_start="53070" e_stop="52643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGGAAACATGATTAAAATTCTCAACGGTTCTGGTAAATTATTGGAACACCTATTTATTTCCTGAACGTTTGATCATATACATCTTGTCTTCTGTGTTTGTTTTTGTTCAGATTTATTTCATGCTTCTTCCCATTTTTCTATATTGACTCAAGACAAAATGATGTCTTCAATTTTTGACGTTCGGTGCCATGTTATGAGCATGAACCAAACAGAACTTCTTTTATGATCTCATTGTTGCCTAATAAACACTACCATTCAGCAATGGTTTTAGGTGTTTTCGGATTATATGAGAATAAAGAAACTCACGTACTTTCCTATTCAAAAAAAAGAAACTCTAGGTGTTCTGAGGCAAAGTATTCACTGTTAGAATAAAAATAGGTTTATACAATCCTTTTAGAATAAGAATAGAAATAAGAACAAGTATAAGAATAGTAATAGGAATCGCAATAGTATTGTAGTACAATTTCAAAAGGATTGTATTGTAGTATCTATAAATAGGGTTTCTGTAGATACAACAGTTCAACAATATTTCTCTCCTATATTTCTCGCATAGAATCAGAGCCTCTACGGTTTTGGTGAACTTCTAACTACCGGAGGGTGGGTAATTATTACCCATATATCTCGCCTATTTGGCTACTGATTATGTTAGCAAAAGTTGGGTCCATCATGTGTCTTTTTTGTGGATAATTTTCTAATATCTTATTTGTGTAGCATCGTGTTATCATCAGAATGAGTATTTTTTTAGATCCGAGTTGTGTAGTATTATGCCATCTTTTTGGTGATTACTTTCTCATATCTGATTAGCGTAGCATCATTTTTTTCCACGGACTACTTTCTTATTTGTGTAGGGTCATGCCATCGCTCCAACCTTACCCACATAATTTCTCTTTTTCAATAGGGTTGTGCCATCAATTTGACTCTATCCATATAATTTCTATTTTTCAATAGTCGAGCCATCATTCCTACCCAGCAAATAATTTATTTCTCAAATTGTGACCACTTTCAGCCATTAAACCTAATACTTCGGTGCATGAGCATGTTCTGGTCAATTTTTCAGTGACTTTTTTGTCTGATATGGACTCATCAATTGATTCCAAGACGATCCATATAATTTTATACCAGATTTTGAGCACTTCCTGACAACCGTTGCATTGTGAAGAAGTCAAGATAGAGCAATACTGCAATTTTATCACTTTCTGTTTTATTGACATTATGCATCAAATGAAATACCAAATTCAGTATTTCATGAGAAGACCAAGCACATTGAGATTGATTGACATTATGTGTCAAATCTAGTATTTTAAATGAGAAGACAAAACACATTAAGATTGATTGTCAATTTTGTGAAGTTGAGTGATCAACTTGCATGTATCTCATGAAGCCCCTCATCGGTCCTTCTATTAGTTACATTTGTAACTGTTAAGAATGACATAAGTCTCACATCGGTGGTTAATGAGATGGGTGAACTCCTTATAACTTATAAGTCTTGGCAATCCTCATCCCTTTGAGTTAGCTTTTGGGGTGTGGGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGATCTTGTCTCACTCGATGTTGGGACCGCCAAAATCAAAGTTGCCCACTCACCAGATGCTGAGCACTGGGCGTGAGGTGGTGTTAAAGAATAACAAAAGTTCCATATCGGTGGTTAATGAGATGAGTGGACTCATAAGGCTTGGGCAATCCTCCTCTCTTTGAGCTCTTGGGGTGTGAGTTAGGCCGAAGACCTAATTTCATAGTAACAAGCTATGTATGTGACTTATATGCACTAGCTTGAGGGCGAATGTCAGAATAAGAATATGTTTATAAAATTTTATTTAGAATACAAATAGGAATAGGAATAAGAATAGTATGTAGTATCCTAGTTGATAAAGGATTATATTGTAGTATCTATTAATAGGGTGTTGTAATAATGCAGATACAACAATTCAATAATATTTTTATCGTATATTTCTCATAATCACGGTATAGGATAAGAAAATACAGACTGCCTATGTTTGCTGCTCTTTGGTGCAAATTTCAAGATATGTGATTTACACAACAATTTTTTTTCGAAAAAGGACCTAAAATACCCTTAAAGTATTAGATATAGGACAAATCTACATTTCATTCACGTATTAACTTTAAAATACCCTTCTTATCCACCTATTGGCTCCAAAATACCCTTATCATCTACTTTTGAGTTCAAAATTGACAACTTATTTAACAATTTTAAATTTAAACTATTTAAATATTTTTTTTAAATATATGGCGCTCAATTATTTGTTATAATTTAACTTATTAATATTATTTATAAATCAATCCACTACCTACTTATTACTAATTGAATCCACCCAATTAATAAATCCGCTCCATTACTAATGCAACAATAGGATAACTACTGTCAATGTGTGTGTCTAAAAATTTGAGACAAAAATGTCCATAGAAGTACGTTATTATACATTCAAGTGGGGTGTTCATGGGTCGGTTTGGATAGATTATTGGTTAAAACAAAAACCAAACCAACTTGATCGATTTTTAAAAAAAATCAAAACCAAGTCAAATATAATATACATGTATCGGTTTGGTGGTAACTGATTTCGGTTTGGTTCGGTTCGGTTATTAACCATACGCAAAAATAAAAGAAACAATTCATTCAAAATGTGAAAAAAGTGACAACAATCTATTCAAAACAAAAAAATAGTTAGAATGACTTGAAGTTACTCGACTTTCGATCACTGAATTTACTATCAATAAAGCTTTAAAATTTACTATATTGGCCTAGAAGGAAGAGACTAACATTTTTAGTCCGGTAAAGAATTGTCATGGATACTCATACACATTAAATCAATTAGATAAATATTTTCATCTTTGGGCATTTTTGCTTTCAGTATGTAAATTATGAAGAAATTATGATGAAAAGATATATAAGATATTTAAAATTGTTTATAAAAAGAATATGTTAAGTGTGTATATAATTAATCAGTTTGGCTCGATTATTTCTTCGAATTTTTCAAATAAAACCATAACCAAATCAAATGCTGTCGGTTTTTCGAAAATCTAAAATCAAACAAAACCAAATCCAAAAAGAATCAATTTTATTTTGTTGATTTGGTTTAGTTTTTCAATTTGAATTGATTTTTATCCAAACCGTGAACACCCCTACATTCAAGTCCTCAATCAAAAGTTCAAACATATTATAATTCAACTGTCTAAATAAAAAATTACCGATAAACTTAAAAGTCTGACTATGTCAATCTTAATTATTCCTTTTGTCTCAATTATGTGATGGTACTTAATAGCTAACTTTTTTAAAAATAATATATTAAAGTTCTAATATTTAAAACAAATCATAAATATTTAAAAAGTATATTTAAAGAAGTGCAAGAATTAATTGCGGATGTACTAATTCTTTATCTTTGGTCATAAATTTCGAATTCAAGCTTGAAAGAGAATCCTATTGAAAGTTTCCTCCTAAATAAGCGGATCAACCTAAATTTAATTGGGGCTTCAATTCAGACTCGAATAATTTTGAAAGTTTATTTTTGTATCTGTAATTTTGTCGTGTTTTAGTAGTGTTTAGGGCAATTTTGATATTAAAATTGGTTTATTAATTGGGTGGGTAGTGAGTTGGTTTATAAATGATGCTAATAAATTAAATTATAATCAATAGTTGAGCGCCATGTATTTTAAAAAATTATTTAAACAGTTTAAATTTAAAATCGCTAAATATGTGGTCAAATTTTGAATCCAAAGATGGATGCCAAGGGTAATTTGGAGCCAATAAGTGGATGAGAAGGGCATTTTGGAGCCAATAGGTGAATGAAGGACAATTTTGTACCAATTCTAACACTTTAAGGGTATATTAGGCCCTTTTCCATTTATTTTTTTTTAAAAAGAACATGTATTCTATGTTTCACACATTTTAAACTTCATTAGCTTTGTTTGCGACTGAGGCGTAATAATTGTTTTTACTTATTTATATTTTGTTGAACTTCATCTCTCAACAGGGATAGCTCCGTATAAAAAAAATTCCTTCTTTTGCTTTTTTCTTTTCGTTCCCCTTTTTGGTGTAATGGACTGCCTACTTTTGTATATTCTAATCACCTGTTTGTATCTTATCTTTCAATAACACATTTTGCTTACCGATCAAGCAAAAAAAATACACTACCATTCAGTGGCAATGATTGGTTTTTTATTTTGATGTCGTATATTGATAATGTCCGTTTTTGAGTATTTTCGTCTAAATGTGGTTTTGAAAACCTCTAGAATTCTTATTCGTTTTGTTATTTAATATGTAATGTAGGGTAGTTCATGCTTGTTGATATGATTATATGAGTATGTCATATTAGGATGTGAAGTGTGCTTATTGTGATGAGCGCACTCTGATGCATTTCTATAAAAAGCCTTTAGCACCAGTAGTTGGGTCTTTATACTGCATATTAGCAGTGTTGTGTACATGAGTTGTGTTATTGAAAGTCGAGCTAGAAATAGTTTCTCGTGATGAGGTTGTTCATTTATGTGTGACCAATCATCATTGCTATATACAAATTACTGGTTTTTCGAACATGATTACTTATATCTTAGGGATTCAAGTTTTTATAGCCCTTTAGCTTTTCGAAAGTGTCAACCTAGTCCTTTAAATGTTGTTAGATTCAACAAACATTCTATCTTTGGTTTTGCCCTTCTGTTACGAAATGCCAATAGACCCTCAATTTAGGGGGGCAAAACAATGTCTCTAGTCTCTATACCCAAAATAATATTGTTTGCTCTTTTTCCCAACAAATGGATAAATAAACAAGAAAGACTTAATTTCTTGTTGATGATTTAACTAAGTTGTTGGTGGTTTCTTGTTTCTTCTTGTTTTCTGTTCTTACTTCTTCTGTCGGTTACCTCAGAGATTTTTTAATCTATACTTGGGTGTTTTTTGGAACTTAGGGAAAGAGTGTCGGCTACGCCCACTCTCTTAGCCTGAATGGTTCAGCTAAACCAAAAGTTGCTTATGGGAGGAGGGGGAGAGGAACCACAATAATTGTCAAGCCTTATATGTTTTTCTTGGTGTGGTTTCAACTTATTACTATTTTTTGGTTTTGGTTGAACTTCTCAGATGGTCCCAAAAGCTTTTGACACTAGTATTTATATCATCCAAACAATTCTTGCAGTCTTGACTCTAGCAGGCATAAGTGTTGAAGGAAGGAGCAAGATAGTTAACTGTTACATATAGATGATAGCTCCTTATAGGGGTGTCAAATGGGCGGGTTGGGTTAAAATTAAAATATTAAAATGGGTTGAAATAGAAATCGGGTTGCGTCTTGACCCACCCAAGTTTACTTTGTGCTCAAATAGGTTGGGTTCACATGGGCTAAAAAATGGGTTGGGTCTTGACCCACCCAATTTGACCCGATTAATTTCAATAATTTTACATAGTAACATTTAACTTTTACAATCACAATGCGAATTTTAGCTCAAGATTTTTTTTAAAAAAAGTAACAAATGGATAGATAAAGAAAACATTTTTCAAAACTCTATTTCATTATTAAATTTTTTTTCTTACCTTGTACCCGACCCTTCCCATTCGAAAAATAAAATTAAAATTTTTACATTCTTATTTTTTCAATCCTTTATCCTACCCCTACCCCCCCAAACCCAAATGAAAAAATAAAAAGTTTAAAAATTATTTTTGAAAAATGTTTCAATTTTTAAGATTTTTTTTTACCTCACCCAACCCTATCCCCTACCCCTTCGAAAATAATTGCTTTTAAAAATATTTCAATTTTTTCGCCCCACCCCCACCCCCACCCCCCATCAATTTTATTTAAAAATATTTTTAGGAAATATATCCCTAAGTTTGACCCAACCACCCAGGCTATCCTTGTCAATTTTTTTTAAAAAAAATTGTTTTTGAATTTTTTTTTTCATTTTTATGCCGACTCGTTACCCTCCTCTCTCCCCCCCCCCCCCCCCCACCTAGGCCATTCCCGTCAAAAAATATTTTTACGGCTACCTCTACCCCTCCCCCCTTCCCCCAACCTAATAAAAAAAATTGAAAAATATTTCAAATTTTAAATAATTTCATTTTTTACGCCCCCACCGGCGACCGCAAAGTTCCCGGGTCGGATTTTGGAACGATCATCAGGGTCTTGTCCTAGTTTGGGTGTCGGGGTCGGATTCTAGATCAATTATCAGGGTTGATTTTCTGATAAAAAATTAATCCTAAAGAGTATTTTCTAGTCTCAAGCCAAAAATAAAAGATATTTTATGAAAAATATCATTTACCAACCAAACATGAGATAATAAATTAGAAAGTCCACTTGTTTTCCAAGAAAACATTTTCTAGGAAATTCCTTCATACCCATCACACCCAGAGATGTTGAGCAAAAGAGGAGAAAGATGATAGTTCTAATTAAGTTTAAGAAGAAAATTGATTTCAGTGCCCCTCTCTATTTAGCATAGGTGATAGGACCATGTTTGTCAAGTCCGTTAGCATTTCTTAGCAGATAGCTCTTTGATGACTCTGAATAGCTTGATGGGCTATTAGTTTTTGGTTAATAAGTCTTTGCTATTTCTGTTCAAATGCTTCCAGTTCAGTTATTTTTTATTAAATATAGGGTCAGGGTAATTATTATCCCTTTTAGTTGTACTGTACGGGTAATTTTGATATTAGCATTTCATATTAGTCAGTCAGCTACATTACTTGTCCTAATGAAGAGCATCTGAAAATTAGCAGTGAACTTTCTACTGCTCTTGTTATTATTGTCAGCAATGACTTCGCTGTGATTTGGTATTATTGGAAGCAATACTCATGAAGCTTCTAATAATTTGTTGCTATTCCTTCTTTACTTTCAGATGATGAGGTGCTTATAATTAAAAGTGTCATCCATAGAGACTTCAATGCAATGATAAAGGTAATGTATCATTCAGATGAGTGGTAGTATCTTTTTACTTCTATGTTCAGATGAATGCTTTTACTAATTTGTTTCTCCGTTAAATCTTTCTTCTTGAGGTTGCTATTGTTAGTTTAGTTGTTCTCAATTTACATTTTCAATCAAGTGCTACCCGTGAATGTTGGGTTGGACTTTAGTTGATATTGTTTTCCGGGAATTTGTTGAAGATTACAAGCTAAGGATACATTTCTATTATAAAAATGAATGCATATCTACATTTTCAAAATATTAATCCTCCCCCCTCCCCCTCTCCCACAAATTGATATGAGTGGAACCATGCATAACAGCTGGATCTTTCTTTTCCATGAAGCATGGGACTCTTGCTCTCTAAGTTGTTCGGACTCTTCAATTTTGGTGCTGCACCTGCGTCAACAAGACATGGGTGTGGTGTGGGATCCGTGTTCGATTTGGTCAACCAATTTTGGGTACTTTGACCAAAAGTCGATAGGGGAAGTTTGGGCAGTTTTCTAATGGTTTCTGTAATCAATACAAAAACTAAGGTGAAATTGAAGAAAATGGAATACCTTTTATTTATAAATTTGTATGTACCTCCTTTCCCTTTAATCTCCTTCCAGGATTCTCCTCAAGTTCTCCACATAATATCTCATAATTTAAGTTTTATAACTCTATTTTTAGGTATTTTAATTATTTTTAGGCAAATCTCCGCACTCGTATCCATATATGGATATGAATCTTAAAAATTAGATCATGAAAGATCTGACCACTAAATCCACACTTGTATTGGACACACCTGCACCCGAGTCCGAGCAACTTAGCTTTCTCTATCCTTTGTATGTGCTAATTAAAATGAAATGATTTTTTATTTATTTTTACTTATGTTGAGTTTTATGGCAATCACCTTACTTTGCATCTTATAACCATGGCTGTGTATCCTTAATATACAACACGTTGAGGAAACTCTGATGGATTCAAGCTGTAGCATTGTAGGTGGTGAAATAGAGAATTCTTTAGGATTCTGAATATTAGTGTTGGTGAGAATCATCCTAAACCTTAGGGGTATAGCATGGACGTTGCCAGGCAAGATAACAGAGGCTCTTAGCTGCAGGGAGGGAACATATTCACATGCAAACGATAGGAGTAGATGGAGAATTATCCCGGCTTGTATCCAGTGAACAATCTGGAAGGAAAGGAATTCCTGATGTTTTGAAAGTTTAGAGAATGATGTGCAGATGATTTAGTTGAATTTCATCTTACTGCTATGTTTTTGGTGTAATCAGATTTACTAATGATACTGTGTCTATCATAGATGTTCTGGATCCATTATAGCTTAGAGAGGGAAGACACTAGAGCTCTATGGTAAATATGGTTTCCGTAAATAGGGAGGGTCGAGTTTATCCAGACCAACTGTCCCATCACCTTGTCGTAAGGGTGAACATTCAGTATTCCCAAAGTTTGGATTCACTAATTCAGTAATCGGTTATTGAAACTAGATACCAAATACCAACTTCTTAGTTCAGTCTGGTAAATCAAACTTTGGTCATTGAGTTTTGGTACAATAATTCGGTAATACTGACATGAACTTCATGTCAGTTCATCCAAATATCATCTTCCAATCTTAACAATGGATCGAACAAAATTAACAAATAATCAACTCAACAAATGATCACTAAAATATGATGAAGCTCGGTGGAACCAATAATCAAGAGAATTTGTGAAATTTTAACCATCTATAACAGTACCAAACCCAATCAATCGAAAGGCAATATCAGATTAAGTACAAACAATTTCAGATATATGGTATATATTGATATTAATGTTTCATACTGAACCCTAATATCATAATTCTTAAATTTCTCTTGAAAATCTTACCGAATTATCGAAACTCAATTCAGTTGAGTGATTCAGAGATTTATGCACAACCCTTCTTCGGTTAAGAAAAACTAATGCCTCAAATATGCAAATCACACTTAAACACATTATGAACATTTTGGAACACTCAAAACACCAATATGAATTCGTCTCACATTTTTTACCATGGCCAAATCTTAATTCCTGCTTGATTCGGTGTATATTTTAGCATATCTCTGATTAGTTTACAAATCTGCTTTAATGAATCTAGTGAATGATGGTAGACTAGAGTCATATGACCTCGGGCAAGGGAAAAAGGCAGGGGCAGTAATTGGGTTAAGAGAGTTTCTAGGCTGAGAGTAGGGTCTTGGAACATTGGACATTGATGAGGGAGTCAATAGAATTAGTGAAGATTCTCAAGAAGAGGGAGATTAATATAACTTGTGTCTAGATAACCAAATGGGTAGGAACTAAGGCTCGAGATGTGAATGCGTTTAAATTGTTGTACTCAGGAGTCTCGAAGATCAGTAATAGAGTGAACAATCTAGTAGATATAAATCTAAAGGAGCAAGTGGTAGACATTAGGATGATCAGCGATAGGATGATGTCGATTAAACTAGTTGTTACCGGTCTTACTTTGAATATTATTAGTGTTACACACTAAAAGCAGACATGGACGAGGAGGTTAAGAAGAGCTTTTGGGACGATTTAGTTGAGGTTGTGAGAGGTATCCACACACTGAGAAGCTATTCATCGGAGGAGATTTTAGTAGCCACGTCGAGACAACTCCAAAAGGCTATATGATGATGTGCATGAAGGTTCTGCTTTTGGGGATAGAAACGAAGAAGAAGCCTCACTTTAGAATTATGCAAAAGCTTTTTAATTGGAGATTGCTGACTCTAGTTTCCCTGAAGGACTAACACTTCGTGACATTCCGGAGCATGTTGGCTAAGACTCAAATAGACTACATGCTCCTTAGGAAGGGTGATAGAGGTCTTTGTAAGGAATGCAAATCCCGAGTGAGAATCATACAACCCAGCATAAGCTCTTGGCTATGGATTTGAACCCACCACCACTCAACCAAAAAAGTTGATTCTGAACTTTGTTTGTGAAGGAACCGAACTTTGACGGCCAAACCGTTTTTATGCGCCGCTTTACCCTTAAAGGAAAATGAGTTTTGCTCCTTTGGGTGCTAGGTGCTCCTGTGGTTCGCGAGAAGGAGAAAGGATGTTGCATTTAGCACACGAGGATAAATAGAGTCTTCGTCTATGCATGAATTGCAACAAAAAATAAATAATAAAATAAAGCTGAAACAGAGGTATAATGGGGGACAGGTAAGGTCAACAAGGTTGGATAGTGTGTACGCGATGTCGGTGAGATGAAAATTGTCGAACATGATTGCAGGATGGATGATTAAGTAGTTTTCTTTAGAAAACAGAGTAGCTTCACTATCATGGGTAGATGCTGTTAATTGAAGAATGTCTTGTGCTGATGCAGTGCTACATTGCTAATTGATTCGAAGTATTGGCTTAAGGGATTTGTTTATTTATCTTCAGACGTTGATCCTGGTTACACTTGTAATATTTCATGGCATGTTGGAAATGAATTTTAAATGTATGTTTGATTGAAAAAGAAGCCCTACTATTATTTTATGACGTGGTAGAATCTGATTTTTTTGTAAGGTGGTGGGAATCTGATGCTTTGTGACATCAAGTTCATTTGAAGAGAATATGATTTTCCTCCATTATTTATCGCAGAAAATCCGGAATCCAGTCTATCTGTTCCAAGGTATCGTATTACGCAGAGGTGCGAAAGGAACTGGGATGAAATCAATAGAATTAGCACTTTCCATGTGCGACATTGTTGACATCTATGGTTTCACTGTCGATCCTGGTTACACAGAATGGTAATGTTCTATTATGCTCCTTTTCTTCATTGTTACTTCTGCTTTTACTAGACGACAAAATAAATGCACATTTAAAAAACTTGGTATCGGGTTTTCTCTTTGCAACTCTATCCAATGTTGAAATATTACCATCTTTCTGGAATATTCGACACTTCCACTTGAATTCCATCTTCTAGTTTACCTTTCTTAACTTTTGCATGCAATTTCTTACATCTAATGACCATTAAACATTATCTCTGTGTGGCTATTGGGGAACTTTGTTGTATAGGACTCGATACTTTTCCACACCAAGGAAAGGGCACAACCCACTCCAAGGAAGGGCTTATTATCAACTCTTAGAATGCCTTGGAGTAAGGACACTGGATTAATGCAGTTAAAAGTTCATTTTTCAATTTGTTCATTTTTTTGTTTGATGCTCTCACTAAGAAATCATATTTTAGGTCATACGAATCCATTCTCCTATGCGAGCAAAGAGAAAGCAAGACTGGTCTGATGTGCCTAGTCGAGAAATGATAAACAACGCTCACAGAGCTGCATTGCATTTGAAAAAGAAGCAAGCTGGGCAAGAGGGGGGATTGGGACGATTTGTTAACTGTAAAGTATGGGGCAAATCAGGTCCCTATGGCACTGGGCCTGTATCTGGTTCCACAGATATGACAGATACCAGGAAGGAGTCAAATTACAATCGATGGGAAATCATGCCTTTTGAGAGCTTGAGGGAGGAAGCACGGAAGCACTATATGCAGAT-GGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATCTAGTCTGCGTGAAACATCCCCTGAAATCCGAGGCATGAAACAATGGCTTGATATGATGGATCCATTTGAGTTG</genome_strand>
        <mrna_strand>TGCCGGAAACATGATTAAAATTCTCAACGGTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAGGTGCTTATAATTAAAAGTGTCATCCATAGAGACTTCAATGCAATGATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCGGAATCCAGTCTATCTGTTCCAAGGTATCGTATTACGCAGAGGTGCGAAAGGAACTGGGATGAAATCAATAGAATTAGCACTTTCCATGTGCGACATTGTTGACATCTATGGTTTCACTGTCGATCCTGGTTACACAGAATG............................................................................................................................................................................................................................................................................GACTCGATACTTTTCCACACCAAGGAAAGGGCACAACCCACTCCAAGGAAGGGCTTATTATCAACTCTTAGAATGCCTTGGA..........................................................................................GTCATACGAATCCATTCTCCTATGCGAGCAAAGAGAAAGCAAGACTGGTCTGATGTGCCTAGTCGAGAAATGATAAACAACGCTCACAGAGCTGCATTGCATTTGAAAAAGAAGCAAGCTGGGCAAGAGGGGGGATTGGGACGATTTGTTAACTGTAAAGTATGGGGCAAATCAGGTCCCTATGGCACTGGGCCTGTATCTGGTTCCACAGATATGACAGATACCAGGAAGGAGTCAAATTACAATCGATGGGAAATCATGCCTTTTGAGAGCTTGAGGGAGGAAGCACGGAAGCACTATATGCAGATNGGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATCTAGTCTGCGTG-AACATCCCCTGAAATCCGAGGCATGAAACAATGGCTGGATATGATGGATCCATTTGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255489" ref_strand="+" ref_description="SGN-E255489 [cLEG-30-M10]">
      <seq>tgccggaaacatgattaaaattctcaacggttctgatgatgaagcgcttatggggaaaagggtcatccatagagacttcaatgcaatgataaagaaaatccggaatccagtctatctgttccaaggtatcgtattacgcagaggtgcgaaaggaactgggatgaaatcaatagaattagcactttccatgtgcgacattgttgacatctatggtttcactgtcgatcctggttacacagaatggactcgatacttttccacaccaaggaaagggcacaacccactccaaggaagggcttattatcaactcttagaatgccttggagtcatacgaatccattctcctatgcgagcaaagagaaagcaagactggtctgatgtgcctagtcgagaaatgataaacaacgctcacagagctgcattgcatttgaaaaagaagcaagctgggcaagaggggggattgggacgatttgttaactgtaaagtatggggcaaatcaggtccctatggcactgggcctgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="64482" stop="52569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64182" g_stop="64148" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64147" i_stop="57324" i_length="6824">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57323" g_stop="57265" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="94" r_length="59" r_score="0.881"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57264" i_stop="53660" i_length="3605">
            <donor d_prob="0.955" d_score="0.88"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53659" g_stop="53511" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="243" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53510" i_stop="53243" i_length="268">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53242" g_stop="53161" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="325" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53160" i_stop="53071" i_length="90">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53070" g_stop="52869" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="527" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E255489" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64182" e_stop="64148"/>
          <exon e_start="57323" e_stop="57265"/>
          <exon e_start="53659" e_stop="53511"/>
          <exon e_start="53242" e_stop="53161"/>
          <exon e_start="53070" e_stop="52869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGGAAACATGATTAAAATTCTCAACGGTTCTGGTAAATTATTGGAACACCTATTTATTTCCTGAACGTTTGATCATATACATCTTGTCTTCTGTGTTTGTTTTTGTTCAGATTTATTTCATGCTTCTTCCCATTTTTCTATATTGACTCAAGACAAAATGATGTCTTCAATTTTTGACGTTCGGTGCCATGTTATGAGCATGAACCAAACAGAACTTCTTTTATGATCTCATTGTTGCCTAATAAACACTACCATTCAGCAATGGTTTTAGGTGTTTTCGGATTATATGAGAATAAAGAAACTCACGTACTTTCCTATTCAAAAAAAAGAAACTCTAGGTGTTCTGAGGCAAAGTATTCACTGTTAGAATAAAAATAGGTTTATACAATCCTTTTAGAATAAGAATAGAAATAAGAACAAGTATAAGAATAGTAATAGGAATCGCAATAGTATTGTAGTACAATTTCAAAAGGATTGTATTGTAGTATCTATAAATAGGGTTTCTGTAGATACAACAGTTCAACAATATTTCTCTCCTATATTTCTCGCATAGAATCAGAGCCTCTACGGTTTTGGTGAACTTCTAACTACCGGAGGGTGGGTAATTATTACCCATATATCTCGCCTATTTGGCTACTGATTATGTTAGCAAAAGTTGGGTCCATCATGTGTCTTTTTTGTGGATAATTTTCTAATATCTTATTTGTGTAGCATCGTGTTATCATCAGAATGAGTATTTTTTTAGATCCGAGTTGTGTAGTATTATGCCATCTTTTTGGTGATTACTTTCTCATATCTGATTAGCGTAGCATCATTTTTTTCCACGGACTACTTTCTTATTTGTGTAGGGTCATGCCATCGCTCCAACCTTACCCACATAATTTCTCTTTTTCAATAGGGTTGTGCCATCAATTTGACTCTATCCATATAATTTCTATTTTTCAATAGTCGAGCCATCATTCCTACCCAGCAAATAATTTATTTCTCAAATTGTGACCACTTTCAGCCATTAAACCTAATACTTCGGTGCATGAGCATGTTCTGGTCAATTTTTCAGTGACTTTTTTGTCTGATATGGACTCATCAATTGATTCCAAGACGATCCATATAATTTTATACCAGATTTTGAGCACTTCCTGACAACCGTTGCATTGTGAAGAAGTCAAGATAGAGCAATACTGCAATTTTATCACTTTCTGTTTTATTGACATTATGCATCAAATGAAATACCAAATTCAGTATTTCATGAGAAGACCAAGCACATTGAGATTGATTGACATTATGTGTCAAATCTAGTATTTTAAATGAGAAGACAAAACACATTAAGATTGATTGTCAATTTTGTGAAGTTGAGTGATCAACTTGCATGTATCTCATGAAGCCCCTCATCGGTCCTTCTATTAGTTACATTTGTAACTGTTAAGAATGACATAAGTCTCACATCGGTGGTTAATGAGATGGGTGAACTCCTTATAACTTATAAGTCTTGGCAATCCTCATCCCTTTGAGTTAGCTTTTGGGGTGTGGGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGATCTTGTCTCACTCGATGTTGGGACCGCCAAAATCAAAGTTGCCCACTCACCAGATGCTGAGCACTGGGCGTGAGGTGGTGTTAAAGAATAACAAAAGTTCCATATCGGTGGTTAATGAGATGAGTGGACTCATAAGGCTTGGGCAATCCTCCTCTCTTTGAGCTCTTGGGGTGTGAGTTAGGCCGAAGACCTAATTTCATAGTAACAAGCTATGTATGTGACTTATATGCACTAGCTTGAGGGCGAATGTCAGAATAAGAATATGTTTATAAAATTTTATTTAGAATACAAATAGGAATAGGAATAAGAATAGTATGTAGTATCCTAGTTGATAAAGGATTATATTGTAGTATCTATTAATAGGGTGTTGTAATAATGCAGATACAACAATTCAATAATATTTTTATCGTATATTTCTCATAATCACGGTATAGGATAAGAAAATACAGACTGCCTATGTTTGCTGCTCTTTGGTGCAAATTTCAAGATATGTGATTTACACAACAATTTTTTTTCGAAAAAGGACCTAAAATACCCTTAAAGTATTAGATATAGGACAAATCTACATTTCATTCACGTATTAACTTTAAAATACCCTTCTTATCCACCTATTGGCTCCAAAATACCCTTATCATCTACTTTTGAGTTCAAAATTGACAACTTATTTAACAATTTTAAATTTAAACTATTTAAATATTTTTTTTAAATATATGGCGCTCAATTATTTGTTATAATTTAACTTATTAATATTATTTATAAATCAATCCACTACCTACTTATTACTAATTGAATCCACCCAATTAATAAATCCGCTCCATTACTAATGCAACAATAGGATAACTACTGTCAATGTGTGTGTCTAAAAATTTGAGACAAAAATGTCCATAGAAGTACGTTATTATACATTCAAGTGGGGTGTTCATGGGTCGGTTTGGATAGATTATTGGTTAAAACAAAAACCAAACCAACTTGATCGATTTTTAAAAAAAATCAAAACCAAGTCAAATATAATATACATGTATCGGTTTGGTGGTAACTGATTTCGGTTTGGTTCGGTTCGGTTATTAACCATACGCAAAAATAAAAGAAACAATTCATTCAAAATGTGAAAAAAGTGACAACAATCTATTCAAAACAAAAAAATAGTTAGAATGACTTGAAGTTACTCGACTTTCGATCACTGAATTTACTATCAATAAAGCTTTAAAATTTACTATATTGGCCTAGAAGGAAGAGACTAACATTTTTAGTCCGGTAAAGAATTGTCATGGATACTCATACACATTAAATCAATTAGATAAATATTTTCATCTTTGGGCATTTTTGCTTTCAGTATGTAAATTATGAAGAAATTATGATGAAAAGATATATAAGATATTTAAAATTGTTTATAAAAAGAATATGTTAAGTGTGTATATAATTAATCAGTTTGGCTCGATTATTTCTTCGAATTTTTCAAATAAAACCATAACCAAATCAAATGCTGTCGGTTTTTCGAAAATCTAAAATCAAACAAAACCAAATCCAAAAAGAATCAATTTTATTTTGTTGATTTGGTTTAGTTTTTCAATTTGAATTGATTTTTATCCAAACCGTGAACACCCCTACATTCAAGTCCTCAATCAAAAGTTCAAACATATTATAATTCAACTGTCTAAATAAAAAATTACCGATAAACTTAAAAGTCTGACTATGTCAATCTTAATTATTCCTTTTGTCTCAATTATGTGATGGTACTTAATAGCTAACTTTTTTAAAAATAATATATTAAAGTTCTAATATTTAAAACAAATCATAAATATTTAAAAAGTATATTTAAAGAAGTGCAAGAATTAATTGCGGATGTACTAATTCTTTATCTTTGGTCATAAATTTCGAATTCAAGCTTGAAAGAGAATCCTATTGAAAGTTTCCTCCTAAATAAGCGGATCAACCTAAATTTAATTGGGGCTTCAATTCAGACTCGAATAATTTTGAAAGTTTATTTTTGTATCTGTAATTTTGTCGTGTTTTAGTAGTGTTTAGGGCAATTTTGATATTAAAATTGGTTTATTAATTGGGTGGGTAGTGAGTTGGTTTATAAATGATGCTAATAAATTAAATTATAATCAATAGTTGAGCGCCATGTATTTTAAAAAATTATTTAAACAGTTTAAATTTAAAATCGCTAAATATGTGGTCAAATTTTGAATCCAAAGATGGATGCCAAGGGTAATTTGGAGCCAATAAGTGGATGAGAAGGGCATTTTGGAGCCAATAGGTGAATGAAGGACAATTTTGTACCAATTCTAACACTTTAAGGGTATATTAGGCCCTTTTCCATTTATTTTTTTTTAAAAAGAACATGTATTCTATGTTTCACACATTTTAAACTTCATTAGCTTTGTTTGCGACTGAGGCGTAATAATTGTTTTTACTTATTTATATTTTGTTGAACTTCATCTCTCAACAGGGATAGCTCCGTATAAAAAAAATTCCTTCTTTTGCTTTTTTCTTTTCGTTCCCCTTTTTGGTGTAATGGACTGCCTACTTTTGTATATTCTAATCACCTGTTTGTATCTTATCTTTCAATAACACATTTTGCTTACCGATCAAGCAAAAAAAATACACTACCATTCAGTGGCAATGATTGGTTTTTTATTTTGATGTCGTATATTGATAATGTCCGTTTTTGAGTATTTTCGTCTAAATGTGGTTTTGAAAACCTCTAGAATTCTTATTCGTTTTGTTATTTAATATGTAATGTAGGGTAGTTCATGCTTGTTGATATGATTATATGAGTATGTCATATTAGGATGTGAAGTGTGCTTATTGTGATGAGCGCACTCTGATGCATTTCTATAAAAAGCCTTTAGCACCAGTAGTTGGGTCTTTATACTGCATATTAGCAGTGTTGTGTACATGAGTTGTGTTATTGAAAGTCGAGCTAGAAATAGTTTCTCGTGATGAGGTTGTTCATTTATGTGTGACCAATCATCATTGCTATATACAAATTACTGGTTTTTCGAACATGATTACTTATATCTTAGGGATTCAAGTTTTTATAGCCCTTTAGCTTTTCGAAAGTGTCAACCTAGTCCTTTAAATGTTGTTAGATTCAACAAACATTCTATCTTTGGTTTTGCCCTTCTGTTACGAAATGCCAATAGACCCTCAATTTAGGGGGGCAAAACAATGTCTCTAGTCTCTATACCCAAAATAATATTGTTTGCTCTTTTTCCCAACAAATGGATAAATAAACAAGAAAGACTTAATTTCTTGTTGATGATTTAACTAAGTTGTTGGTGGTTTCTTGTTTCTTCTTGTTTTCTGTTCTTACTTCTTCTGTCGGTTACCTCAGAGATTTTTTAATCTATACTTGGGTGTTTTTTGGAACTTAGGGAAAGAGTGTCGGCTACGCCCACTCTCTTAGCCTGAATGGTTCAGCTAAACCAAAAGTTGCTTATGGGAGGAGGGGGAGAGGAACCACAATAATTGTCAAGCCTTATATGTTTTTCTTGGTGTGGTTTCAACTTATTACTATTTTTTGGTTTTGGTTGAACTTCTCAGATGGTCCCAAAAGCTTTTGACACTAGTATTTATATCATCCAAACAATTCTTGCAGTCTTGACTCTAGCAGGCATAAGTGTTGAAGGAAGGAGCAAGATAGTTAACTGTTACATATAGATGATAGCTCCTTATAGGGGTGTCAAATGGGCGGGTTGGGTTAAAATTAAAATATTAAAATGGGTTGAAATAGAAATCGGGTTGCGTCTTGACCCACCCAAGTTTACTTTGTGCTCAAATAGGTTGGGTTCACATGGGCTAAAAAATGGGTTGGGTCTTGACCCACCCAATTTGACCCGATTAATTTCAATAATTTTACATAGTAACATTTAACTTTTACAATCACAATGCGAATTTTAGCTCAAGATTTTTTTTAAAAAAAGTAACAAATGGATAGATAAAGAAAACATTTTTCAAAACTCTATTTCATTATTAAATTTTTTTTCTTACCTTGTACCCGACCCTTCCCATTCGAAAAATAAAATTAAAATTTTTACATTCTTATTTTTTCAATCCTTTATCCTACCCCTACCCCCCCAAACCCAAATGAAAAAATAAAAAGTTTAAAAATTATTTTTGAAAAATGTTTCAATTTTTAAGATTTTTTTTTACCTCACCCAACCCTATCCCCTACCCCTTCGAAAATAATTGCTTTTAAAAATATTTCAATTTTTTCGCCCCACCCCCACCCCCACCCCCCATCAATTTTATTTAAAAATATTTTTAGGAAATATATCCCTAAGTTTGACCCAACCACCCAGGCTATCCTTGTCAATTTTTTTTAAAAAAAATTGTTTTTGAATTTTTTTTTTCATTTTTATGCCGACTCGTTACCCTCCTCTCTCCCCCCCCCCCCCCCCCACCTAGGCCATTCCCGTCAAAAAATATTTTTACGGCTACCTCTACCCCTCCCCCCTTCCCCCAACCTAATAAAAAAAATTGAAAAATATTTCAAATTTTAAATAATTTCATTTTTTACGCCCCCACCGGCGACCGCAAAGTTCCCGGGTCGGATTTTGGAACGATCATCAGGGTCTTGTCCTAGTTTGGGTGTCGGGGTCGGATTCTAGATCAATTATCAGGGTTGATTTTCTGATAAAAAATTAATCCTAAAGAGTATTTTCTAGTCTCAAGCCAAAAATAAAAGATATTTTATGAAAAATATCATTTACCAACCAAACATGAGATAATAAATTAGAAAGTCCACTTGTTTTCCAAGAAAACATTTTCTAGGAAATTCCTTCATACCCATCACACCCAGAGATGTTGAGCAAAAGAGGAGAAAGATGATAGTTCTAATTAAGTTTAAGAAGAAAATTGATTTCAGTGCCCCTCTCTATTTAGCATAGGTGATAGGACCATGTTTGTCAAGTCCGTTAGCATTTCTTAGCAGATAGCTCTTTGATGACTCTGAATAGCTTGATGGGCTATTAGTTTTTGGTTAATAAGTCTTTGCTATTTCTGTTCAAATGCTTCCAGTTCAGTTATTTTTTATTAAATATAGGGTCAGGGTAATTATTATCCCTTTTAGTTGTACTGTACGGGTAATTTTGATATTAGCATTTCATATTAGTCAGTCAGCTACATTACTTGTCCTAATGAAGAGCATCTGAAAATTAGCAGTGAACTTTCTACTGCTCTTGTTATTATTGTCAGCAATGACTTCGCTGTGATTTGGTATTATTGGAAGCAATACTCATGAAGCTTCTAATAATTTGTTGCTATTCCTTCTTTACTTTCAGATGATGAGGTGCTTATAATTAAAAGTGTCATCCATAGAGACTTCAATGCAATGATAAAGGTAATGTATCATTCAGATGAGTGGTAGTATCTTTTTACTTCTATGTTCAGATGAATGCTTTTACTAATTTGTTTCTCCGTTAAATCTTTCTTCTTGAGGTTGCTATTGTTAGTTTAGTTGTTCTCAATTTACATTTTCAATCAAGTGCTACCCGTGAATGTTGGGTTGGACTTTAGTTGATATTGTTTTCCGGGAATTTGTTGAAGATTACAAGCTAAGGATACATTTCTATTATAAAAATGAATGCATATCTACATTTTCAAAATATTAATCCTCCCCCCTCCCCCTCTCCCACAAATTGATATGAGTGGAACCATGCATAACAGCTGGATCTTTCTTTTCCATGAAGCATGGGACTCTTGCTCTCTAAGTTGTTCGGACTCTTCAATTTTGGTGCTGCACCTGCGTCAACAAGACATGGGTGTGGTGTGGGATCCGTGTTCGATTTGGTCAACCAATTTTGGGTACTTTGACCAAAAGTCGATAGGGGAAGTTTGGGCAGTTTTCTAATGGTTTCTGTAATCAATACAAAAACTAAGGTGAAATTGAAGAAAATGGAATACCTTTTATTTATAAATTTGTATGTACCTCCTTTCCCTTTAATCTCCTTCCAGGATTCTCCTCAAGTTCTCCACATAATATCTCATAATTTAAGTTTTATAACTCTATTTTTAGGTATTTTAATTATTTTTAGGCAAATCTCCGCACTCGTATCCATATATGGATATGAATCTTAAAAATTAGATCATGAAAGATCTGACCACTAAATCCACACTTGTATTGGACACACCTGCACCCGAGTCCGAGCAACTTAGCTTTCTCTATCCTTTGTATGTGCTAATTAAAATGAAATGATTTTTTATTTATTTTTACTTATGTTGAGTTTTATGGCAATCACCTTACTTTGCATCTTATAACCATGGCTGTGTATCCTTAATATACAACACGTTGAGGAAACTCTGATGGATTCAAGCTGTAGCATTGTAGGTGGTGAAATAGAGAATTCTTTAGGATTCTGAATATTAGTGTTGGTGAGAATCATCCTAAACCTTAGGGGTATAGCATGGACGTTGCCAGGCAAGATAACAGAGGCTCTTAGCTGCAGGGAGGGAACATATTCACATGCAAACGATAGGAGTAGATGGAGAATTATCCCGGCTTGTATCCAGTGAACAATCTGGAAGGAAAGGAATTCCTGATGTTTTGAAAGTTTAGAGAATGATGTGCAGATGATTTAGTTGAATTTCATCTTACTGCTATGTTTTTGGTGTAATCAGATTTACTAATGATACTGTGTCTATCATAGATGTTCTGGATCCATTATAGCTTAGAGAGGGAAGACACTAGAGCTCTATGGTAAATATGGTTTCCGTAAATAGGGAGGGTCGAGTTTATCCAGACCAACTGTCCCATCACCTTGTCGTAAGGGTGAACATTCAGTATTCCCAAAGTTTGGATTCACTAATTCAGTAATCGGTTATTGAAACTAGATACCAAATACCAACTTCTTAGTTCAGTCTGGTAAATCAAACTTTGGTCATTGAGTTTTGGTACAATAATTCGGTAATACTGACATGAACTTCATGTCAGTTCATCCAAATATCATCTTCCAATCTTAACAATGGATCGAACAAAATTAACAAATAATCAACTCAACAAATGATCACTAAAATATGATGAAGCTCGGTGGAACCAATAATCAAGAGAATTTGTGAAATTTTAACCATCTATAACAGTACCAAACCCAATCAATCGAAAGGCAATATCAGATTAAGTACAAACAATTTCAGATATATGGTATATATTGATATTAATGTTTCATACTGAACCCTAATATCATAATTCTTAAATTTCTCTTGAAAATCTTACCGAATTATCGAAACTCAATTCAGTTGAGTGATTCAGAGATTTATGCACAACCCTTCTTCGGTTAAGAAAAACTAATGCCTCAAATATGCAAATCACACTTAAACACATTATGAACATTTTGGAACACTCAAAACACCAATATGAATTCGTCTCACATTTTTTACCATGGCCAAATCTTAATTCCTGCTTGATTCGGTGTATATTTTAGCATATCTCTGATTAGTTTACAAATCTGCTTTAATGAATCTAGTGAATGATGGTAGACTAGAGTCATATGACCTCGGGCAAGGGAAAAAGGCAGGGGCAGTAATTGGGTTAAGAGAGTTTCTAGGCTGAGAGTAGGGTCTTGGAACATTGGACATTGATGAGGGAGTCAATAGAATTAGTGAAGATTCTCAAGAAGAGGGAGATTAATATAACTTGTGTCTAGATAACCAAATGGGTAGGAACTAAGGCTCGAGATGTGAATGCGTTTAAATTGTTGTACTCAGGAGTCTCGAAGATCAGTAATAGAGTGAACAATCTAGTAGATATAAATCTAAAGGAGCAAGTGGTAGACATTAGGATGATCAGCGATAGGATGATGTCGATTAAACTAGTTGTTACCGGTCTTACTTTGAATATTATTAGTGTTACACACTAAAAGCAGACATGGACGAGGAGGTTAAGAAGAGCTTTTGGGACGATTTAGTTGAGGTTGTGAGAGGTATCCACACACTGAGAAGCTATTCATCGGAGGAGATTTTAGTAGCCACGTCGAGACAACTCCAAAAGGCTATATGATGATGTGCATGAAGGTTCTGCTTTTGGGGATAGAAACGAAGAAGAAGCCTCACTTTAGAATTATGCAAAAGCTTTTTAATTGGAGATTGCTGACTCTAGTTTCCCTGAAGGACTAACACTTCGTGACATTCCGGAGCATGTTGGCTAAGACTCAAATAGACTACATGCTCCTTAGGAAGGGTGATAGAGGTCTTTGTAAGGAATGCAAATCCCGAGTGAGAATCATACAACCCAGCATAAGCTCTTGGCTATGGATTTGAACCCACCACCACTCAACCAAAAAAGTTGATTCTGAACTTTGTTTGTGAAGGAACCGAACTTTGACGGCCAAACCGTTTTTATGCGCCGCTTTACCCTTAAAGGAAAATGAGTTTTGCTCCTTTGGGTGCTAGGTGCTCCTGTGGTTCGCGAGAAGGAGAAAGGATGTTGCATTTAGCACACGAGGATAAATAGAGTCTTCGTCTATGCATGAATTGCAACAAAAAATAAATAATAAAATAAAGCTGAAACAGAGGTATAATGGGGGACAGGTAAGGTCAACAAGGTTGGATAGTGTGTACGCGATGTCGGTGAGATGAAAATTGTCGAACATGATTGCAGGATGGATGATTAAGTAGTTTTCTTTAGAAAACAGAGTAGCTTCACTATCATGGGTAGATGCTGTTAATTGAAGAATGTCTTGTGCTGATGCAGTGCTACATTGCTAATTGATTCGAAGTATTGGCTTAAGGGATTTGTTTATTTATCTTCAGACGTTGATCCTGGTTACACTTGTAATATTTCATGGCATGTTGGAAATGAATTTTAAATGTATGTTTGATTGAAAAAGAAGCCCTACTATTATTTTATGACGTGGTAGAATCTGATTTTTTTGTAAGGTGGTGGGAATCTGATGCTTTGTGACATCAAGTTCATTTGAAGAGAATATGATTTTCCTCCATTATTTATCGCAGAAAATCCGGAATCCAGTCTATCTGTTCCAAGGTATCGTATTACGCAGAGGTGCGAAAGGAACTGGGATGAAATCAATAGAATTAGCACTTTCCATGTGCGACATTGTTGACATCTATGGTTTCACTGTCGATCCTGGTTACACAGAATGGTAATGTTCTATTATGCTCCTTTTCTTCATTGTTACTTCTGCTTTTACTAGACGACAAAATAAATGCACATTTAAAAAACTTGGTATCGGGTTTTCTCTTTGCAACTCTATCCAATGTTGAAATATTACCATCTTTCTGGAATATTCGACACTTCCACTTGAATTCCATCTTCTAGTTTACCTTTCTTAACTTTTGCATGCAATTTCTTACATCTAATGACCATTAAACATTATCTCTGTGTGGCTATTGGGGAACTTTGTTGTATAGGACTCGATACTTTTCCACACCAAGGAAAGGGCACAACCCACTCCAAGGAAGGGCTTATTATCAACTCTTAGAATGCCTTGGAGTAAGGACACTGGATTAATGCAGTTAAAAGTTCATTTTTCAATTTGTTCATTTTTTTGTTTGATGCTCTCACTAAGAAATCATATTTTAGGTCATACGAATCCATTCTCCTATGCGAGCAAAGAGAAAGCAAGACTGGTCTGATGTGCCTAGTCGAGAAATGATAAACAACGCTCACAGAGCTGCATTGCATTTGAAAAAGAAGCAAGCTGGGCAAGAGGGGGGATTGGGACGATTTGTTAACTGTAAAGTATGGGGCAAATCAGGTCCCTATGGCACTGGGCCTGTATCTG</genome_strand>
        <mrna_strand>TGCCGGAAACATGATTAAAATTCTCAACGGTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAAGCGCTTATGGGGAAAAGGGTCATCCATAGAGACTTCAATGCAATGATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCGGAATCCAGTCTATCTGTTCCAAGGTATCGTATTACGCAGAGGTGCGAAAGGAACTGGGATGAAATCAATAGAATTAGCACTTTCCATGTGCGACATTGTTGACATCTATGGTTTCACTGTCGATCCTGGTTACACAGAATG............................................................................................................................................................................................................................................................................GACTCGATACTTTTCCACACCAAGGAAAGGGCACAACCCACTCCAAGGAAGGGCTTATTATCAACTCTTAGAATGCCTTGGA..........................................................................................GTCATACGAATCCATTCTCCTATGCGAGCAAAGAGAAAGCAAGACTGGTCTGATGTGCCTAGTCGAGAAATGATAAACAACGCTCACAGAGCTGCATTGCATTTGAAAAAGAAGCAAGCTGGGCAAGAGGGGGGATTGGGACGATTTGTTAACTGTAAAGTATGGGGCAAATCAGGTCCCTATGGCACTGGGCCTGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258240" ref_strand="+" ref_description="SGN-E258240 [cLEG-49-H18]">
      <seq>ttgactatgcagcaaaaaggatcgcacagctaggagcagacaaatgttacaatcagactctttgcgaagaacatctcaatctaactttaccagctaagcccccgtttcaccctcgacaattcagaagatgtgcagtcgttggcaattctggagacctcttgaagacgcaatttggagaggaaattgacagtcatgatgcagttatacgagacaatgaggctcctgttaatgagagatacgccaagcatgttggcctgaagagagattttcgcttagttgtgcgaggtgctgccggaaacatgattaaaattctcaacggttctgatgatgaggtgcttataattaaaagtgtcatccatagagacttcaatgcaatgataaagaaaatccggaatccagtctatctgttccaaggtatcgtattacgcagaggtgcgaaaggaactgggatgaaatcaatagaattagcactttccatgtgcgacattgttgacatctatggtttcactgtcgatcctggttacaccgaatggactcgatacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="66903" stop="53198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66603" g_stop="66573" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66572" i_stop="66461" i_length="112">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66460" g_stop="66259" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="233" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66258" i_stop="64239" i_length="2020">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64238" g_stop="64148" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="324" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64147" i_stop="57324" i_length="6824">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57323" g_stop="57265" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="383" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57264" i_stop="53660" i_length="3605">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53659" g_stop="53511" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="532" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53510" i_stop="53243" i_length="268">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53242" g_stop="53228" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="547" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E258240" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66603" e_stop="66573"/>
          <exon e_start="66460" e_stop="66259"/>
          <exon e_start="64238" e_stop="64148"/>
          <exon e_start="57323" e_stop="57265"/>
          <exon e_start="53659" e_stop="53511"/>
          <exon e_start="53242" e_stop="53228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTATGCAGCAAAAAGGATCGCACAGCTGTAAGTTATTGGCTTCATCCTCCATTCACCTTCTTAATCAATTAATGATAGATTTTATGTGATTTGATCTTCATATTTTGTTTCATTGTTTCCTTACTTTTCCTGTTTGCAGAGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCCGTTTCACCCTCGACAATTCAGAAGATGTGCAGTCGTTGGCAATTCTGGAGACCTCTTGAAGACGCAATTTGGAGAGGAAATTGACAGTCATGATGCAGTTATACGAGACAATGAGGCTCCTGTTAATGAGGTAAATTAGCTCTTAGTCCGTTGAAAATAAAAATGATTTATGACACAAAGCATTTGCAAGGATAGTATCTCATGTCAGGATCCATGTTGAACACAAAGGTCATTGGATATGTGGAGAAGCATCATAGACACATGTTTGATTTAGTTTTTTCATCTTCAGCTGTCTGATCAATTTTTTAATATCATTCTTTGATTTCTTAATTTATTTGGTCTTAATTTTTTTCAAAAGTTGTCCAATTCATTCAATGTTAAGTAGTTGTCTCAAGAAAAACATACACTGTTAAATGAATTGGAACTGAATAGAGCAATGTCACTTGTGTTCTTCACGCCTCTTTGAAGGCATATTTTTCTTGAGAAAGCAATATAAGAGAGTTAAGAACTAAATATGTTGATACACGCTATGGATGATTGACACTAATGTGTATTTAAGATACCTATCAAAAACTTCTGGGTAGTATCTAGGCAGGTCCTTGTCTTCCACTATCACTTTTTTTATGAAGTTATATGTTTCATTAGAATGCATCAAGGAGATGCGAAGTTACAAGTAACAGAGGGACAAAAAGGAGTATTTAGCTCAGTTCAGCTCCTATAAGAAGTGTTAATCTAGAACTAGGGTGCTAACAAAGTCTAGAAAATGTCCAGCACTAAGGGCTGGGGTCAACTTTGACCAACAAAAATGCTTAAAGTATGCTTTTAGCTTTAAGAGAGTGATTTGGAGTTGAGATGCTATCAAAACATCTCTTGTTCCTTCTGTCCACAAACACCAAAAGATAGTATCAGGAATCATCAACCAGATTTTCTTGATGGACTTATCAACTTCCTATAAACTCCAACACAAAAGTGCCTGTCTCATGTTTTTGGCATAACCCAACTCAGGCCAGAAAGGGTGCAAAACATGTTCCAAACACCAGTAGCTATTCTACAGTGCAAAAACAAGTGATTAATAGATTCCAGATCCTTGTTACATCGGTAACATCTGTTAACCAGCAGAAGTGCTTTCCGTTTAAGGTTGTCCAGTGTTAGACAAGCTTCATATAAGGCAATCTAGTTGAAGCATATGACCTTGATAGTAGCTTGGTCCTTCAAATCAATTTCCATGGCCAAGAATCCAGCACCTGATTTTGCTTTCAGATCTGCCTGTAACAGTCCTCGACTGTGAATATACCCTTACTGCCCCAACACATGGTATCTTGAAGGTCTTCATTTATGTTGCAACTCCACTTTTGCAGACAAATCGATAAAACTATCCATTTCCTAGTCTTGGATATACCTTCTTCAATGCATATCCAGTTGTTGTTACTCCCATTCTGAGCAATTGTGGAGTGGAGTCGTTGTCTTGAGCAATGTTGAAGGTGCTAGGATAGACATCCATGAGTGCTGTGTTGTTAAGCCATTTATGCTTCCAAAACTGATGTGCACTTCATTAGCAGCTACTATCACTAAGATAATATATAAGTCAAATCAACATCCTAAACTTGTGCCCCAATACTCTTGCATATAAAGTGAAACAAAGAACTTAGTAAAGCCACCGGAGTCCTCATTCTATTTTATCTTGCATATTCTTAAAATTCTTATGTCATTATCCACGCTGCTACAAGTATTTCTTTCCATGCAATACTGGTAGAGCATGTGTGGCATTTTTATTATTTGATCAACTCTACTAGAGAATAACTAGTCTGGCTTGTAATTGAGATCTGAGAGTGATGATGACAACTAGAATTTATGTAGTCATTAATATGCATTAATCATAATCTGTTAATAGTTGTATTAACCCAGTAAAAAAAAATCTTCTAGATTTTACATCTAGCTTTATTGTTTGATCAACTCTATTAGAGACTAACTAGGTCTGGCTTGTAATTGAGATCTGAGAGTGATGAAGACTACCAGCATTTATGTATTCATTAATATGCATAATCTGTTAAAAGTTGTATTATCTCAGTAAAAATACCCTTCTAGAGTTCACGTCTATGGTGTCACCAGAATTTGTTGTGTAAATAACTGCTTATGAATATGCTATGCAGAGATACGCCAAGCATGTTGGCCTGAAGAGAGATTTTCGCTTAGTTGTGCGAGGTGCTGCCGGAAACATGATTAAAATTCTCAACGGTTCTGGTAAATTATTGGAACACCTATTTATTTCCTGAACGTTTGATCATATACATCTTGTCTTCTGTGTTTGTTTTTGTTCAGATTTATTTCATGCTTCTTCCCATTTTTCTATATTGACTCAAGACAAAATGATGTCTTCAATTTTTGACGTTCGGTGCCATGTTATGAGCATGAACCAAACAGAACTTCTTTTATGATCTCATTGTTGCCTAATAAACACTACCATTCAGCAATGGTTTTAGGTGTTTTCGGATTATATGAGAATAAAGAAACTCACGTACTTTCCTATTCAAAAAAAAGAAACTCTAGGTGTTCTGAGGCAAAGTATTCACTGTTAGAATAAAAATAGGTTTATACAATCCTTTTAGAATAAGAATAGAAATAAGAACAAGTATAAGAATAGTAATAGGAATCGCAATAGTATTGTAGTACAATTTCAAAAGGATTGTATTGTAGTATCTATAAATAGGGTTTCTGTAGATACAACAGTTCAACAATATTTCTCTCCTATATTTCTCGCATAGAATCAGAGCCTCTACGGTTTTGGTGAACTTCTAACTACCGGAGGGTGGGTAATTATTACCCATATATCTCGCCTATTTGGCTACTGATTATGTTAGCAAAAGTTGGGTCCATCATGTGTCTTTTTTGTGGATAATTTTCTAATATCTTATTTGTGTAGCATCGTGTTATCATCAGAATGAGTATTTTTTTAGATCCGAGTTGTGTAGTATTATGCCATCTTTTTGGTGATTACTTTCTCATATCTGATTAGCGTAGCATCATTTTTTTCCACGGACTACTTTCTTATTTGTGTAGGGTCATGCCATCGCTCCAACCTTACCCACATAATTTCTCTTTTTCAATAGGGTTGTGCCATCAATTTGACTCTATCCATATAATTTCTATTTTTCAATAGTCGAGCCATCATTCCTACCCAGCAAATAATTTATTTCTCAAATTGTGACCACTTTCAGCCATTAAACCTAATACTTCGGTGCATGAGCATGTTCTGGTCAATTTTTCAGTGACTTTTTTGTCTGATATGGACTCATCAATTGATTCCAAGACGATCCATATAATTTTATACCAGATTTTGAGCACTTCCTGACAACCGTTGCATTGTGAAGAAGTCAAGATAGAGCAATACTGCAATTTTATCACTTTCTGTTTTATTGACATTATGCATCAAATGAAATACCAAATTCAGTATTTCATGAGAAGACCAAGCACATTGAGATTGATTGACATTATGTGTCAAATCTAGTATTTTAAATGAGAAGACAAAACACATTAAGATTGATTGTCAATTTTGTGAAGTTGAGTGATCAACTTGCATGTATCTCATGAAGCCCCTCATCGGTCCTTCTATTAGTTACATTTGTAACTGTTAAGAATGACATAAGTCTCACATCGGTGGTTAATGAGATGGGTGAACTCCTTATAACTTATAAGTCTTGGCAATCCTCATCCCTTTGAGTTAGCTTTTGGGGTGTGGGTTAGGCTTAAGACCTAATTTCACATGGTATCAGAGCAGGATCTTGTCTCACTCGATGTTGGGACCGCCAAAATCAAAGTTGCCCACTCACCAGATGCTGAGCACTGGGCGTGAGGTGGTGTTAAAGAATAACAAAAGTTCCATATCGGTGGTTAATGAGATGAGTGGACTCATAAGGCTTGGGCAATCCTCCTCTCTTTGAGCTCTTGGGGTGTGAGTTAGGCCGAAGACCTAATTTCATAGTAACAAGCTATGTATGTGACTTATATGCACTAGCTTGAGGGCGAATGTCAGAATAAGAATATGTTTATAAAATTTTATTTAGAATACAAATAGGAATAGGAATAAGAATAGTATGTAGTATCCTAGTTGATAAAGGATTATATTGTAGTATCTATTAATAGGGTGTTGTAATAATGCAGATACAACAATTCAATAATATTTTTATCGTATATTTCTCATAATCACGGTATAGGATAAGAAAATACAGACTGCCTATGTTTGCTGCTCTTTGGTGCAAATTTCAAGATATGTGATTTACACAACAATTTTTTTTCGAAAAAGGACCTAAAATACCCTTAAAGTATTAGATATAGGACAAATCTACATTTCATTCACGTATTAACTTTAAAATACCCTTCTTATCCACCTATTGGCTCCAAAATACCCTTATCATCTACTTTTGAGTTCAAAATTGACAACTTATTTAACAATTTTAAATTTAAACTATTTAAATATTTTTTTTAAATATATGGCGCTCAATTATTTGTTATAATTTAACTTATTAATATTATTTATAAATCAATCCACTACCTACTTATTACTAATTGAATCCACCCAATTAATAAATCCGCTCCATTACTAATGCAACAATAGGATAACTACTGTCAATGTGTGTGTCTAAAAATTTGAGACAAAAATGTCCATAGAAGTACGTTATTATACATTCAAGTGGGGTGTTCATGGGTCGGTTTGGATAGATTATTGGTTAAAACAAAAACCAAACCAACTTGATCGATTTTTAAAAAAAATCAAAACCAAGTCAAATATAATATACATGTATCGGTTTGGTGGTAACTGATTTCGGTTTGGTTCGGTTCGGTTATTAACCATACGCAAAAATAAAAGAAACAATTCATTCAAAATGTGAAAAAAGTGACAACAATCTATTCAAAACAAAAAAATAGTTAGAATGACTTGAAGTTACTCGACTTTCGATCACTGAATTTACTATCAATAAAGCTTTAAAATTTACTATATTGGCCTAGAAGGAAGAGACTAACATTTTTAGTCCGGTAAAGAATTGTCATGGATACTCATACACATTAAATCAATTAGATAAATATTTTCATCTTTGGGCATTTTTGCTTTCAGTATGTAAATTATGAAGAAATTATGATGAAAAGATATATAAGATATTTAAAATTGTTTATAAAAAGAATATGTTAAGTGTGTATATAATTAATCAGTTTGGCTCGATTATTTCTTCGAATTTTTCAAATAAAACCATAACCAAATCAAATGCTGTCGGTTTTTCGAAAATCTAAAATCAAACAAAACCAAATCCAAAAAGAATCAATTTTATTTTGTTGATTTGGTTTAGTTTTTCAATTTGAATTGATTTTTATCCAAACCGTGAACACCCCTACATTCAAGTCCTCAATCAAAAGTTCAAACATATTATAATTCAACTGTCTAAATAAAAAATTACCGATAAACTTAAAAGTCTGACTATGTCAATCTTAATTATTCCTTTTGTCTCAATTATGTGATGGTACTTAATAGCTAACTTTTTTAAAAATAATATATTAAAGTTCTAATATTTAAAACAAATCATAAATATTTAAAAAGTATATTTAAAGAAGTGCAAGAATTAATTGCGGATGTACTAATTCTTTATCTTTGGTCATAAATTTCGAATTCAAGCTTGAAAGAGAATCCTATTGAAAGTTTCCTCCTAAATAAGCGGATCAACCTAAATTTAATTGGGGCTTCAATTCAGACTCGAATAATTTTGAAAGTTTATTTTTGTATCTGTAATTTTGTCGTGTTTTAGTAGTGTTTAGGGCAATTTTGATATTAAAATTGGTTTATTAATTGGGTGGGTAGTGAGTTGGTTTATAAATGATGCTAATAAATTAAATTATAATCAATAGTTGAGCGCCATGTATTTTAAAAAATTATTTAAACAGTTTAAATTTAAAATCGCTAAATATGTGGTCAAATTTTGAATCCAAAGATGGATGCCAAGGGTAATTTGGAGCCAATAAGTGGATGAGAAGGGCATTTTGGAGCCAATAGGTGAATGAAGGACAATTTTGTACCAATTCTAACACTTTAAGGGTATATTAGGCCCTTTTCCATTTATTTTTTTTTAAAAAGAACATGTATTCTATGTTTCACACATTTTAAACTTCATTAGCTTTGTTTGCGACTGAGGCGTAATAATTGTTTTTACTTATTTATATTTTGTTGAACTTCATCTCTCAACAGGGATAGCTCCGTATAAAAAAAATTCCTTCTTTTGCTTTTTTCTTTTCGTTCCCCTTTTTGGTGTAATGGACTGCCTACTTTTGTATATTCTAATCACCTGTTTGTATCTTATCTTTCAATAACACATTTTGCTTACCGATCAAGCAAAAAAAATACACTACCATTCAGTGGCAATGATTGGTTTTTTATTTTGATGTCGTATATTGATAATGTCCGTTTTTGAGTATTTTCGTCTAAATGTGGTTTTGAAAACCTCTAGAATTCTTATTCGTTTTGTTATTTAATATGTAATGTAGGGTAGTTCATGCTTGTTGATATGATTATATGAGTATGTCATATTAGGATGTGAAGTGTGCTTATTGTGATGAGCGCACTCTGATGCATTTCTATAAAAAGCCTTTAGCACCAGTAGTTGGGTCTTTATACTGCATATTAGCAGTGTTGTGTACATGAGTTGTGTTATTGAAAGTCGAGCTAGAAATAGTTTCTCGTGATGAGGTTGTTCATTTATGTGTGACCAATCATCATTGCTATATACAAATTACTGGTTTTTCGAACATGATTACTTATATCTTAGGGATTCAAGTTTTTATAGCCCTTTAGCTTTTCGAAAGTGTCAACCTAGTCCTTTAAATGTTGTTAGATTCAACAAACATTCTATCTTTGGTTTTGCCCTTCTGTTACGAAATGCCAATAGACCCTCAATTTAGGGGGGCAAAACAATGTCTCTAGTCTCTATACCCAAAATAATATTGTTTGCTCTTTTTCCCAACAAATGGATAAATAAACAAGAAAGACTTAATTTCTTGTTGATGATTTAACTAAGTTGTTGGTGGTTTCTTGTTTCTTCTTGTTTTCTGTTCTTACTTCTTCTGTCGGTTACCTCAGAGATTTTTTAATCTATACTTGGGTGTTTTTTGGAACTTAGGGAAAGAGTGTCGGCTACGCCCACTCTCTTAGCCTGAATGGTTCAGCTAAACCAAAAGTTGCTTATGGGAGGAGGGGGAGAGGAACCACAATAATTGTCAAGCCTTATATGTTTTTCTTGGTGTGGTTTCAACTTATTACTATTTTTTGGTTTTGGTTGAACTTCTCAGATGGTCCCAAAAGCTTTTGACACTAGTATTTATATCATCCAAACAATTCTTGCAGTCTTGACTCTAGCAGGCATAAGTGTTGAAGGAAGGAGCAAGATAGTTAACTGTTACATATAGATGATAGCTCCTTATAGGGGTGTCAAATGGGCGGGTTGGGTTAAAATTAAAATATTAAAATGGGTTGAAATAGAAATCGGGTTGCGTCTTGACCCACCCAAGTTTACTTTGTGCTCAAATAGGTTGGGTTCACATGGGCTAAAAAATGGGTTGGGTCTTGACCCACCCAATTTGACCCGATTAATTTCAATAATTTTACATAGTAACATTTAACTTTTACAATCACAATGCGAATTTTAGCTCAAGATTTTTTTTAAAAAAAGTAACAAATGGATAGATAAAGAAAACATTTTTCAAAACTCTATTTCATTATTAAATTTTTTTTCTTACCTTGTACCCGACCCTTCCCATTCGAAAAATAAAATTAAAATTTTTACATTCTTATTTTTTCAATCCTTTATCCTACCCCTACCCCCCCAAACCCAAATGAAAAAATAAAAAGTTTAAAAATTATTTTTGAAAAATGTTTCAATTTTTAAGATTTTTTTTTACCTCACCCAACCCTATCCCCTACCCCTTCGAAAATAATTGCTTTTAAAAATATTTCAATTTTTTCGCCCCACCCCCACCCCCACCCCCCATCAATTTTATTTAAAAATATTTTTAGGAAATATATCCCTAAGTTTGACCCAACCACCCAGGCTATCCTTGTCAATTTTTTTTAAAAAAAATTGTTTTTGAATTTTTTTTTTCATTTTTATGCCGACTCGTTACCCTCCTCTCTCCCCCCCCCCCCCCCCCACCTAGGCCATTCCCGTCAAAAAATATTTTTACGGCTACCTCTACCCCTCCCCCCTTCCCCCAACCTAATAAAAAAAATTGAAAAATATTTCAAATTTTAAATAATTTCATTTTTTACGCCCCCACCGGCGACCGCAAAGTTCCCGGGTCGGATTTTGGAACGATCATCAGGGTCTTGTCCTAGTTTGGGTGTCGGGGTCGGATTCTAGATCAATTATCAGGGTTGATTTTCTGATAAAAAATTAATCCTAAAGAGTATTTTCTAGTCTCAAGCCAAAAATAAAAGATATTTTATGAAAAATATCATTTACCAACCAAACATGAGATAATAAATTAGAAAGTCCACTTGTTTTCCAAGAAAACATTTTCTAGGAAATTCCTTCATACCCATCACACCCAGAGATGTTGAGCAAAAGAGGAGAAAGATGATAGTTCTAATTAAGTTTAAGAAGAAAATTGATTTCAGTGCCCCTCTCTATTTAGCATAGGTGATAGGACCATGTTTGTCAAGTCCGTTAGCATTTCTTAGCAGATAGCTCTTTGATGACTCTGAATAGCTTGATGGGCTATTAGTTTTTGGTTAATAAGTCTTTGCTATTTCTGTTCAAATGCTTCCAGTTCAGTTATTTTTTATTAAATATAGGGTCAGGGTAATTATTATCCCTTTTAGTTGTACTGTACGGGTAATTTTGATATTAGCATTTCATATTAGTCAGTCAGCTACATTACTTGTCCTAATGAAGAGCATCTGAAAATTAGCAGTGAACTTTCTACTGCTCTTGTTATTATTGTCAGCAATGACTTCGCTGTGATTTGGTATTATTGGAAGCAATACTCATGAAGCTTCTAATAATTTGTTGCTATTCCTTCTTTACTTTCAGATGATGAGGTGCTTATAATTAAAAGTGTCATCCATAGAGACTTCAATGCAATGATAAAGGTAATGTATCATTCAGATGAGTGGTAGTATCTTTTTACTTCTATGTTCAGATGAATGCTTTTACTAATTTGTTTCTCCGTTAAATCTTTCTTCTTGAGGTTGCTATTGTTAGTTTAGTTGTTCTCAATTTACATTTTCAATCAAGTGCTACCCGTGAATGTTGGGTTGGACTTTAGTTGATATTGTTTTCCGGGAATTTGTTGAAGATTACAAGCTAAGGATACATTTCTATTATAAAAATGAATGCATATCTACATTTTCAAAATATTAATCCTCCCCCCTCCCCCTCTCCCACAAATTGATATGAGTGGAACCATGCATAACAGCTGGATCTTTCTTTTCCATGAAGCATGGGACTCTTGCTCTCTAAGTTGTTCGGACTCTTCAATTTTGGTGCTGCACCTGCGTCAACAAGACATGGGTGTGGTGTGGGATCCGTGTTCGATTTGGTCAACCAATTTTGGGTACTTTGACCAAAAGTCGATAGGGGAAGTTTGGGCAGTTTTCTAATGGTTTCTGTAATCAATACAAAAACTAAGGTGAAATTGAAGAAAATGGAATACCTTTTATTTATAAATTTGTATGTACCTCCTTTCCCTTTAATCTCCTTCCAGGATTCTCCTCAAGTTCTCCACATAATATCTCATAATTTAAGTTTTATAACTCTATTTTTAGGTATTTTAATTATTTTTAGGCAAATCTCCGCACTCGTATCCATATATGGATATGAATCTTAAAAATTAGATCATGAAAGATCTGACCACTAAATCCACACTTGTATTGGACACACCTGCACCCGAGTCCGAGCAACTTAGCTTTCTCTATCCTTTGTATGTGCTAATTAAAATGAAATGATTTTTTATTTATTTTTACTTATGTTGAGTTTTATGGCAATCACCTTACTTTGCATCTTATAACCATGGCTGTGTATCCTTAATATACAACACGTTGAGGAAACTCTGATGGATTCAAGCTGTAGCATTGTAGGTGGTGAAATAGAGAATTCTTTAGGATTCTGAATATTAGTGTTGGTGAGAATCATCCTAAACCTTAGGGGTATAGCATGGACGTTGCCAGGCAAGATAACAGAGGCTCTTAGCTGCAGGGAGGGAACATATTCACATGCAAACGATAGGAGTAGATGGAGAATTATCCCGGCTTGTATCCAGTGAACAATCTGGAAGGAAAGGAATTCCTGATGTTTTGAAAGTTTAGAGAATGATGTGCAGATGATTTAGTTGAATTTCATCTTACTGCTATGTTTTTGGTGTAATCAGATTTACTAATGATACTGTGTCTATCATAGATGTTCTGGATCCATTATAGCTTAGAGAGGGAAGACACTAGAGCTCTATGGTAAATATGGTTTCCGTAAATAGGGAGGGTCGAGTTTATCCAGACCAACTGTCCCATCACCTTGTCGTAAGGGTGAACATTCAGTATTCCCAAAGTTTGGATTCACTAATTCAGTAATCGGTTATTGAAACTAGATACCAAATACCAACTTCTTAGTTCAGTCTGGTAAATCAAACTTTGGTCATTGAGTTTTGGTACAATAATTCGGTAATACTGACATGAACTTCATGTCAGTTCATCCAAATATCATCTTCCAATCTTAACAATGGATCGAACAAAATTAACAAATAATCAACTCAACAAATGATCACTAAAATATGATGAAGCTCGGTGGAACCAATAATCAAGAGAATTTGTGAAATTTTAACCATCTATAACAGTACCAAACCCAATCAATCGAAAGGCAATATCAGATTAAGTACAAACAATTTCAGATATATGGTATATATTGATATTAATGTTTCATACTGAACCCTAATATCATAATTCTTAAATTTCTCTTGAAAATCTTACCGAATTATCGAAACTCAATTCAGTTGAGTGATTCAGAGATTTATGCACAACCCTTCTTCGGTTAAGAAAAACTAATGCCTCAAATATGCAAATCACACTTAAACACATTATGAACATTTTGGAACACTCAAAACACCAATATGAATTCGTCTCACATTTTTTACCATGGCCAAATCTTAATTCCTGCTTGATTCGGTGTATATTTTAGCATATCTCTGATTAGTTTACAAATCTGCTTTAATGAATCTAGTGAATGATGGTAGACTAGAGTCATATGACCTCGGGCAAGGGAAAAAGGCAGGGGCAGTAATTGGGTTAAGAGAGTTTCTAGGCTGAGAGTAGGGTCTTGGAACATTGGACATTGATGAGGGAGTCAATAGAATTAGTGAAGATTCTCAAGAAGAGGGAGATTAATATAACTTGTGTCTAGATAACCAAATGGGTAGGAACTAAGGCTCGAGATGTGAATGCGTTTAAATTGTTGTACTCAGGAGTCTCGAAGATCAGTAATAGAGTGAACAATCTAGTAGATATAAATCTAAAGGAGCAAGTGGTAGACATTAGGATGATCAGCGATAGGATGATGTCGATTAAACTAGTTGTTACCGGTCTTACTTTGAATATTATTAGTGTTACACACTAAAAGCAGACATGGACGAGGAGGTTAAGAAGAGCTTTTGGGACGATTTAGTTGAGGTTGTGAGAGGTATCCACACACTGAGAAGCTATTCATCGGAGGAGATTTTAGTAGCCACGTCGAGACAACTCCAAAAGGCTATATGATGATGTGCATGAAGGTTCTGCTTTTGGGGATAGAAACGAAGAAGAAGCCTCACTTTAGAATTATGCAAAAGCTTTTTAATTGGAGATTGCTGACTCTAGTTTCCCTGAAGGACTAACACTTCGTGACATTCCGGAGCATGTTGGCTAAGACTCAAATAGACTACATGCTCCTTAGGAAGGGTGATAGAGGTCTTTGTAAGGAATGCAAATCCCGAGTGAGAATCATACAACCCAGCATAAGCTCTTGGCTATGGATTTGAACCCACCACCACTCAACCAAAAAAGTTGATTCTGAACTTTGTTTGTGAAGGAACCGAACTTTGACGGCCAAACCGTTTTTATGCGCCGCTTTACCCTTAAAGGAAAATGAGTTTTGCTCCTTTGGGTGCTAGGTGCTCCTGTGGTTCGCGAGAAGGAGAAAGGATGTTGCATTTAGCACACGAGGATAAATAGAGTCTTCGTCTATGCATGAATTGCAACAAAAAATAAATAATAAAATAAAGCTGAAACAGAGGTATAATGGGGGACAGGTAAGGTCAACAAGGTTGGATAGTGTGTACGCGATGTCGGTGAGATGAAAATTGTCGAACATGATTGCAGGATGGATGATTAAGTAGTTTTCTTTAGAAAACAGAGTAGCTTCACTATCATGGGTAGATGCTGTTAATTGAAGAATGTCTTGTGCTGATGCAGTGCTACATTGCTAATTGATTCGAAGTATTGGCTTAAGGGATTTGTTTATTTATCTTCAGACGTTGATCCTGGTTACACTTGTAATATTTCATGGCATGTTGGAAATGAATTTTAAATGTATGTTTGATTGAAAAAGAAGCCCTACTATTATTTTATGACGTGGTAGAATCTGATTTTTTTGTAAGGTGGTGGGAATCTGATGCTTTGTGACATCAAGTTCATTTGAAGAGAATATGATTTTCCTCCATTATTTATCGCAGAAAATCCGGAATCCAGTCTATCTGTTCCAAGGTATCGTATTACGCAGAGGTGCGAAAGGAACTGGGATGAAATCAATAGAATTAGCACTTTCCATGTGCGACATTGTTGACATCTATGGTTTCACTGTCGATCCTGGTTACACAGAATGGTAATGTTCTATTATGCTCCTTTTCTTCATTGTTACTTCTGCTTTTACTAGACGACAAAATAAATGCACATTTAAAAAACTTGGTATCGGGTTTTCTCTTTGCAACTCTATCCAATGTTGAAATATTACCATCTTTCTGGAATATTCGACACTTCCACTTGAATTCCATCTTCTAGTTTACCTTTCTTAACTTTTGCATGCAATTTCTTACATCTAATGACCATTAAACATTATCTCTGTGTGGCTATTGGGGAACTTTGTTGTATAGGACTCGATACTTTTC</genome_strand>
        <mrna_strand>TTGACTATGCAGCAAAAAGGATCGCACAGCT................................................................................................................AGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCCGTTTCACCCTCGACAATTCAGAAGATGTGCAGTCGTTGGCAATTCTGGAGACCTCTTGAAGACGCAATTTGGAGAGGAAATTGACAGTCATGATGCAGTTATACGAGACAATGAGGCTCCTGTTAATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACGCCAAGCATGTTGGCCTGAAGAGAGATTTTCGCTTAGTTGTGCGAGGTGCTGCCGGAAACATGATTAAAATTCTCAACGGTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAGGTGCTTATAATTAAAAGTGTCATCCATAGAGACTTCAATGCAATGATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCGGAATCCAGTCTATCTGTTCCAAGGTATCGTATTACGCAGAGGTGCGAAAGGAACTGGGATGAAATCAATAGAATTAGCACTTTCCATGTGCGACATTGTTGACATCTATGGTTTCACTGTCGATCCTGGTTACACCGAATG............................................................................................................................................................................................................................................................................GACTCGATACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366350" ref_strand="+" ref_description="SGN-E366350 [cLPT-1-I5]">
      <seq>tcttgttcgtcttctctctgttgctgctctcttctccattatacttatcgccattcagtcctctttcttcactggtagccgggctcccgttaatttggatattccgatcttgtcccacttccagtctaaccttcagcaatgcgtcgctaaccgagggctgggattgactgctcatataattgatcattgcagtgtcattctcaagtttccccaaggaactaatagcacttggtataatgagcagttcaagatctttgaaccattggagtacaagtacgacgtttgcgaagcaatacttctgtgggagcagtaccgtaacatgacgacagtgttgacaagagaatatttggattctcggcctgatggatggtttgactatgcagcaaaaaggattgcacagctaggagcagacaaatgttacaatcagactctttgcgaagaacatctcaatctaactttaccagctaagcccccgtttcaccctcgacaattcagaagatgtgcagtcgttggcaattctggagacctcttgaagacgcagtttggagaggaaattgacagtcatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="67608" stop="65993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67308" g_stop="67235" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67234" i_stop="67144" i_length="91">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67143" g_stop="67073" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="145" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67072" i_stop="66996" i_length="77">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66995" g_stop="66909" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="232" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66908" i_stop="66826" i_length="83">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66825" g_stop="66748" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="310" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66747" i_stop="66665" i_length="83">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66664" g_stop="66573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="402" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66572" i_stop="66461" i_length="112">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66460" g_stop="66293" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="570" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E366350" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67308" e_stop="67235"/>
          <exon e_start="67143" e_stop="67073"/>
          <exon e_start="66995" e_stop="66909"/>
          <exon e_start="66825" e_stop="66748"/>
          <exon e_start="66664" e_stop="66573"/>
          <exon e_start="66460" e_stop="66293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTCGTCTTCTCTCTGTTGCTGCTCTCTTCTCCATTATACTAATCGCCATTCAGTCCTCTTTCTTCACTGGTTGGTACTACATATCTTCTTTTCCTTAACCCTAATTGTTTGAAAATCCTCTTCGCTAATTTACTATTTTGAATGAATTTGATGCATCCAGGTAGTCGGGCTCCCGTTAATTTGGATATTCCGATCTTGTCCCACTTCCAGTCTAACCTTCAGCAATGCGTCGTAATTATTTTCTGGATCTCCTATATTTTGTTGAAAACTGCACATGTTAGTTGTTTATTCGAATTTCTGCTTTACAGGCTAATCGAGGGCTGGGATTGACTGCTCATATAATTGATCATTGCAATGTCATTCTCAAGTTTCCCCAAGGAACTAATAGCACTTGGGTTTGTCTCTCATCCGTCTCCTACCTGTTGGTTACCTTCTACAAAACACTGAAATGCATTTCCCCATTCATTTTATCTTACAGTATAATGAGCAGTTCAAGATCTTTGAACCATTGGAGTACAAGTACGACGTTTGCGAAACAATACTTCTGTGGGAGCAGGTTCCTCATACTTGTTATTCATGTTAATTAATCATGTTTCCACAACTAGTACATTAAAATATATTGGATTATCTGAAATGCAGTACCGTAACATGACGACAGTGTTGACAAGAGAATATTTGGATTCTCGGCCTGATGGATGGTTTGACTATGCAGCAAAAAGGATCGCACAGCTGTAAGTTATTGGCTTCATCCTCCATTCACCTTCTTAATCAATTAATGATAGATTTTATGTGATTTGATCTTCATATTTTGTTTCATTGTTTCCTTACTTTTCCTGTTTGCAGAGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCCGTTTCACCCTCGACAATTCAGAAGATGTGCAGTCGTTGGCAATTCTGGAGACCTCTTGAAGACGCAATTTGGAGAGGAAATTGACAGTCATGATGC</genome_strand>
        <mrna_strand>TCTTGTTCGTCTTCTCTCTGTTGCTGCTCTCTTCTCCATTATACTTATCGCCATTCAGTCCTCTTTCTTCACTG...........................................................................................GTAGCCGGGCTCCCGTTAATTTGGATATTCCGATCTTGTCCCACTTCCAGTCTAACCTTCAGCAATGCGTC.............................................................................GCTAACCGAGGGCTGGGATTGACTGCTCATATAATTGATCATTGCAGTGTCATTCTCAAGTTTCCCCAAGGAACTAATAGCACTTGG...................................................................................TATAATGAGCAGTTCAAGATCTTTGAACCATTGGAGTACAAGTACGACGTTTGCGAAGCAATACTTCTGTGGGAGCAG...................................................................................TACCGTAACATGACGACAGTGTTGACAAGAGAATATTTGGATTCTCGGCCTGATGGATGGTTTGACTATGCAGCAAAAAGGATTGCACAGCT................................................................................................................AGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCCGTTTCACCCTCGACAATTCAGAAGATGTGCAGTCGTTGGCAATTCTGGAGACCTCTTGAAGACGCAGTTTGGAGAGGAAATTGACAGTCATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364811" ref_strand="+" ref_description="SGN-E364811 [cLPT-4-C6]">
      <seq>aaggttcagcaggaaaccagctcttgttcgtcttctctctgttgctgctctcttctccattatacttatcgccattcagtcctctttcttcactggtagccgggctcccgttaatttggatattccgatcttgtcccacttccagtctaaccttcagcaatgcgtcgctaaccgagggctgggattgactgctcatataattgatcattgcagtgtcattctcaagtttccccaaggaactaatagcacttggtataatgagcagttcaagatctttgaaccattggagtacaagtacgacgtttgcgaagcaatacttctgtgggagcagtaccgtaacatgacgacagtgttgacaagagaatatttggattctcggcctgatggatggtttgactatgcagcaaaaaggattgcacagctaggagcagacaaatgttacaatcagactctttgcgaagaacatctcaatctaactttaccagctaagcccccgtttcaccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="67629" stop="66078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67329" g_stop="67235" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67234" i_stop="67144" i_length="91">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67143" g_stop="67073" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="166" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67072" i_stop="66996" i_length="77">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66995" g_stop="66909" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="253" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66908" i_stop="66826" i_length="83">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66825" g_stop="66748" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="331" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66747" i_stop="66665" i_length="83">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66664" g_stop="66573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="423" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66572" i_stop="66461" i_length="112">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66460" g_stop="66378" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="506" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E364811" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67329" e_stop="67235"/>
          <exon e_start="67143" e_stop="67073"/>
          <exon e_start="66995" e_stop="66909"/>
          <exon e_start="66825" e_stop="66748"/>
          <exon e_start="66664" e_stop="66573"/>
          <exon e_start="66460" e_stop="66378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTCAGCAGGAAACCAGCTCTTGTTCGTCTTCTCTCTGTTGCTGCTCTCTTCTCCATTATACTAATCGCCATTCAGTCCTCTTTCTTCACTGGTTGGTACTACATATCTTCTTTTCCTTAACCCTAATTGTTTGAAAATCCTCTTCGCTAATTTACTATTTTGAATGAATTTGATGCATCCAGGTAGTCGGGCTCCCGTTAATTTGGATATTCCGATCTTGTCCCACTTCCAGTCTAACCTTCAGCAATGCGTCGTAATTATTTTCTGGATCTCCTATATTTTGTTGAAAACTGCACATGTTAGTTGTTTATTCGAATTTCTGCTTTACAGGCTAATCGAGGGCTGGGATTGACTGCTCATATAATTGATCATTGCAATGTCATTCTCAAGTTTCCCCAAGGAACTAATAGCACTTGGGTTTGTCTCTCATCCGTCTCCTACCTGTTGGTTACCTTCTACAAAACACTGAAATGCATTTCCCCATTCATTTTATCTTACAGTATAATGAGCAGTTCAAGATCTTTGAACCATTGGAGTACAAGTACGACGTTTGCGAAACAATACTTCTGTGGGAGCAGGTTCCTCATACTTGTTATTCATGTTAATTAATCATGTTTCCACAACTAGTACATTAAAATATATTGGATTATCTGAAATGCAGTACCGTAACATGACGACAGTGTTGACAAGAGAATATTTGGATTCTCGGCCTGATGGATGGTTTGACTATGCAGCAAAAAGGATCGCACAGCTGTAAGTTATTGGCTTCATCCTCCATTCACCTTCTTAATCAATTAATGATAGATTTTATGTGATTTGATCTTCATATTTTGTTTCATTGTTTCCTTACTTTTCCTGTTTGCAGAGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCCGTTTCACCCTC</genome_strand>
        <mrna_strand>AAGGTTCAGCAGGAAACCAGCTCTTGTTCGTCTTCTCTCTGTTGCTGCTCTCTTCTCCATTATACTTATCGCCATTCAGTCCTCTTTCTTCACTG...........................................................................................GTAGCCGGGCTCCCGTTAATTTGGATATTCCGATCTTGTCCCACTTCCAGTCTAACCTTCAGCAATGCGTC.............................................................................GCTAACCGAGGGCTGGGATTGACTGCTCATATAATTGATCATTGCAGTGTCATTCTCAAGTTTCCCCAAGGAACTAATAGCACTTGG...................................................................................TATAATGAGCAGTTCAAGATCTTTGAACCATTGGAGTACAAGTACGACGTTTGCGAAGCAATACTTCTGTGGGAGCAG...................................................................................TACCGTAACATGACGACAGTGTTGACAAGAGAATATTTGGATTCTCGGCCTGATGGATGGTTTGACTATGCAGCAAAAAGGATTGCACAGCT................................................................................................................AGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCCGTTTCACCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366088" ref_strand="+" ref_description="SGN-E366088 [cLPT-15-J20]">
      <seq>caaggttcagcaggaaaccagctcttgttcgtcttctctctgttgctgctctcttctccattatacttatcgccattcagtcctctttcttcactggtagccgggctcccgttaatttggatattccgatcttgtcccacttccagtctaaccttcagcaatgcgtcgctaaccgagggctgggattgactgctcatataattgatcattgcagtgtcattctcaagtttccccaaggaactaatagcacttggtataatgagcagttcaagatctttgaaccattggagtacaagtacgacgtttgcgaagcaatacttctgtgggagcagtaccgtaacatgacgacagtgttgacaagagaatatttggattctcggcctgatggatggtttgactatgcagcaaaaaggattgcacagctaggagcagacaaatgttacaatcagactctttgcgaagaacatctcaatctaactttaccagctaagccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="67630" stop="66089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67330" g_stop="67235" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67234" i_stop="67144" i_length="91">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67143" g_stop="67073" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="167" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67072" i_stop="66996" i_length="77">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66995" g_stop="66909" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="254" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66908" i_stop="66826" i_length="83">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66825" g_stop="66748" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="332" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66747" i_stop="66665" i_length="83">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66664" g_stop="66573" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="424" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66572" i_stop="66461" i_length="112">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66460" g_stop="66389" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="496" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E366088" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67330" e_stop="67235"/>
          <exon e_start="67143" e_stop="67073"/>
          <exon e_start="66995" e_stop="66909"/>
          <exon e_start="66825" e_stop="66748"/>
          <exon e_start="66664" e_stop="66573"/>
          <exon e_start="66460" e_stop="66389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTTCAGCAGGAAACCAGCTCTTGTTCGTCTTCTCTCTGTTGCTGCTCTCTTCTCCATTATACTAATCGCCATTCAGTCCTCTTTCTTCACTGGTTGGTACTACATATCTTCTTTTCCTTAACCCTAATTGTTTGAAAATCCTCTTCGCTAATTTACTATTTTGAATGAATTTGATGCATCCAGGTAGTCGGGCTCCCGTTAATTTGGATATTCCGATCTTGTCCCACTTCCAGTCTAACCTTCAGCAATGCGTCGTAATTATTTTCTGGATCTCCTATATTTTGTTGAAAACTGCACATGTTAGTTGTTTATTCGAATTTCTGCTTTACAGGCTAATCGAGGGCTGGGATTGACTGCTCATATAATTGATCATTGCAATGTCATTCTCAAGTTTCCCCAAGGAACTAATAGCACTTGGGTTTGTCTCTCATCCGTCTCCTACCTGTTGGTTACCTTCTACAAAACACTGAAATGCATTTCCCCATTCATTTTATCTTACAGTATAATGAGCAGTTCAAGATCTTTGAACCATTGGAGTACAAGTACGACGTTTGCGAAACAATACTTCTGTGGGAGCAGGTTCCTCATACTTGTTATTCATGTTAATTAATCATGTTTCCACAACTAGTACATTAAAATATATTGGATTATCTGAAATGCAGTACCGTAACATGACGACAGTGTTGACAAGAGAATATTTGGATTCTCGGCCTGATGGATGGTTTGACTATGCAGCAAAAAGGATCGCACAGCTGTAAGTTATTGGCTTCATCCTCCATTCACCTTCTTAATCAATTAATGATAGATTTTATGTGATTTGATCTTCATATTTTGTTTCATTGTTTCCTTACTTTTCCTGTTTGCAGAGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCC</genome_strand>
        <mrna_strand>CAAGGTTCAGCAGGAAACCAGCTCTTGTTCGTCTTCTCTCTGTTGCTGCTCTCTTCTCCATTATACTTATCGCCATTCAGTCCTCTTTCTTCACTG...........................................................................................GTAGCCGGGCTCCCGTTAATTTGGATATTCCGATCTTGTCCCACTTCCAGTCTAACCTTCAGCAATGCGTC.............................................................................GCTAACCGAGGGCTGGGATTGACTGCTCATATAATTGATCATTGCAGTGTCATTCTCAAGTTTCCCCAAGGAACTAATAGCACTTGG...................................................................................TATAATGAGCAGTTCAAGATCTTTGAACCATTGGAGTACAAGTACGACGTTTGCGAAGCAATACTTCTGTGGGAGCAG...................................................................................TACCGTAACATGACGACAGTGTTGACAAGAGAATATTTGGATTCTCGGCCTGATGGATGGTTTGACTATGCAGCAAAAAGGATTGCACAGCT................................................................................................................AGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577940" ref_strand="+" ref_description="SGN-E577940 [LE08BF10]">
      <seq>tgagaatgacattgcaatgatcaattatatgagcagtcaatcccagccctcgattagcctgtaaagcagaaattcgaataaacaactaacatgtgcagttttcaacaaaatataggagatccagaaaataattacgacgcattgctgaaggttagactggaagtgggacaagatcggaatatccaaattaacgggagcccgactacctggatgcatcaaattcattcaaaatagtaaattagcgaagaggattttcaaacaattagggttaaggaaaagaagatatgtagtaccaaccagtgaagaaagaggactgaatggcgattagtataatggagaagagagcagcaacagagagaagacgaacaagagctggtttcctgctgaaccttggtcgtgtcatttgggatcaagatctcctcctcaaacttgttttccctatgtaaataacaatcagattatatacttagtttagcacgtgtcccacacacatttcattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="+" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="66638" stop="67740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66938" g_stop="67440" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="+" ref_id="SGN-E577940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66938" e_stop="67440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATGACATTGCAATGATCAATTATATGAGCAGTCAATCCCAGCCCTCGATTAGCCTGTAAAGCAGAAATTCGAATAAACAACTAACATGTGCAGTTTTCAACAAAATATAGGAGATCCAGAAAATAATTACGACGCATTGCTGAAGGTTAGACTGGAAGTGGGACAAGATCGGAATATCCAAATTAACGGGAGCCCGACTACCTGGATGCATCAAATTCATTCAAAATAGTAAATTAGCGAAGAGGATTTTCAAACAATTAGGGTTAAGGAAAAGAAGATATGTAGTACCAACCAGTGAAGAAAGAGGACTGAATGGCGATTAGTATAATGGAGAAGAGAGCAGCAACAGAGAGAAGACGAACAAGAGCTGGTTTCCTGCTGAACCTTGGTCGTGTCATTTGGGATCAAGATCTCCTCCTCAAACTTGTTTTCCCTATGTAAATAACAATCAGATTATATACTTAGTTTAGCACGTGTCCCACACACATTTCATTTTTA</genome_strand>
        <mrna_strand>TGAGAATGACATTGCAATGATCAATTATATGAGCAGTCAATCCCAGCCCTCGATTAGCCTGTAAAGCAGAAATTCGAATAAACAACTAACATGTGCAGTTTTCAACAAAATATAGGAGATCCAGAAAATAATTACGACGCATTGCTGAAGGTTAGACTGGAAGTGGGACAAGATCGGAATATCCAAATTAACGGGAGCCCGACTACCTGGATGCATCAAATTCATTCAAAATAGTAAATTAGCGAAGAGGATTTTCAAACAATTAGGGTTAAGGAAAAGAAGATATGTAGTACCAACCAGTGAAGAAAGAGGACTGAATGGCGATTAGTATAATGGAGAAGAGAGCAGCAACAGAGAGAAGACGAACAAGAGCTGGTTTCCTGCTGAACCTTGGTCGTGTCATTTGGGATCAAGATCTCCTCCTCAAACTTGTTTTCCCTATGTAAATAACAATCAGATTATATACTTAGTTTAGCACGTGTCCCACACACATTTCATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737171" ref_strand="+" ref_description="SGN-E737171 [LC08DA03]">
      <seq>ggaaagaagccaaatcggatcctaatgtcaacttctggtggtagacgttactgaattttgaagggacgtgataaggaataatctgtctgtatatttaagagatgttttgccttttattagcaactgagatttgtttgttgttactcacctagtaggtttgagcaatggttatttttgtgaaattgttttgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="68301" stop="67505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68001" g_stop="67800" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E737171" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68001" e_stop="67800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAAGCCAAATCGGATCCTAATGTCAACTTCTGGTGGTAGACGTTACTGAATTTTGAAGGGACGTGATAAGGAATAATCTGTCTGTATATTTAAGAGATGTTTTGCCTTTTATTAGCAACTGAGATTTGTTTGTTGTTACTCACCTAGTAGGTTTGAGCAATGGTTATTTTTGTGAAATTGTTTTGGGAAAAACTGTT</genome_strand>
        <mrna_strand>GGAAAGAAGCCAAATCGGATCCTAATGTCAACTTCTGGTGGTAGACGTTACTGAATTTTGAAGGGACGTGATAAGGAATAATCTGTCTGTATATTTAAGAGATGTTTTGCCTTTTATTAGCAACTGAGATTTGTTTGTTGTTACTCACCTAGTAGGTTTGAGCAATGGTTATTTTTGTGAAATTGTTTTGGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737401" ref_strand="+" ref_description="SGN-E737401 [LC09CF05]">
      <seq>ggaaagaagccaaatcggatcctaatgtcaacttctggtggtagacgttactgaattttgaagggacgtgataaggaataatctgtctgtatatttaagagatgttttgccttttattagcaactgagatttgtttgttgttactcacctagtaggtttgagcaatggttatttttgtgaaattgttttgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="68301" stop="67505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68001" g_stop="67800" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E737401" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68001" e_stop="67800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAAGCCAAATCGGATCCTAATGTCAACTTCTGGTGGTAGACGTTACTGAATTTTGAAGGGACGTGATAAGGAATAATCTGTCTGTATATTTAAGAGATGTTTTGCCTTTTATTAGCAACTGAGATTTGTTTGTTGTTACTCACCTAGTAGGTTTGAGCAATGGTTATTTTTGTGAAATTGTTTTGGGAAAAACTGTT</genome_strand>
        <mrna_strand>GGAAAGAAGCCAAATCGGATCCTAATGTCAACTTCTGGTGGTAGACGTTACTGAATTTTGAAGGGACGTGATAAGGAATAATCTGTCTGTATATTTAAGAGATGTTTTGCCTTTTATTAGCAACTGAGATTTGTTTGTTGTTACTCACCTAGTAGGTTTGAGCAATGGTTATTTTTGTGAAATTGTTTTGGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739012" ref_strand="+" ref_description="SGN-E739012 [LC15DC06]">
      <seq>ggaaagaagccaaatcggatcctaatgtcaacttctggtggtagacgttactgaattttgaagggacgtgataaggaataatctgtctgtatatttaagagatgttttgccttttattagcaactgagatttgtttgttgttactcacctagtaggtttgagcaatggttatttttgtgaaattgttttgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="68301" stop="67505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68001" g_stop="67800" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E739012" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68001" e_stop="67800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAAGCCAAATCGGATCCTAATGTCAACTTCTGGTGGTAGACGTTACTGAATTTTGAAGGGACGTGATAAGGAATAATCTGTCTGTATATTTAAGAGATGTTTTGCCTTTTATTAGCAACTGAGATTTGTTTGTTGTTACTCACCTAGTAGGTTTGAGCAATGGTTATTTTTGTGAAATTGTTTTGGGAAAAACTGTT</genome_strand>
        <mrna_strand>GGAAAGAAGCCAAATCGGATCCTAATGTCAACTTCTGGTGGTAGACGTTACTGAATTTTGAAGGGACGTGATAAGGAATAATCTGTCTGTATATTTAAGAGATGTTTTGCCTTTTATTAGCAACTGAGATTTGTTTGTTGTTACTCACCTAGTAGGTTTGAGCAATGGTTATTTTTGTGAAATTGTTTTGGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730672" ref_strand="+" ref_description="SGN-E730672 [LA24DC10]">
      <seq>cttctttgtccttatatggcaatgacaagagcctacagaaagacacaagtggcattactgacagagaagagatcagttcctacagtttctaccaggcagttgatggtcagcaccttatcctccatccactgaacatgaagtgccttctgcattactacggtggctacggtggtcttcctaacagaatcagtggaaagattttacaaatggagtccgtgacgcaatcggaggccatgagaaggcgttaccgcttcctaagtcatttttctttgacaacaacatttcagctttgtgaaattgatctcagcaagataatgcccatggatgcactttctccctttatggaggaaatcagaagtagggaaaaacaaaggacgtggctagctaggaaggaacggcgtgaacaagttaaagctgaagccattggcatgtacttagagcctttgccttttagcttttcagaaccttctttcacagaacaacctactttcactagcaatgacttcgaagctttgggaagtacgagtgttactgtaacatcatcaagctcccctgtgcctggaggcaggcaactgttctccaatgttgcaaggcttggttttgctgctggatgtgatcctccagcgctgaaaatggatgagtctgcacgtggttcttctgttgcagctggaacgaggagtcctggaatcctgtcctttgcaaatgtaacctccaaagcaaaagctgttgaaggtcccaatgcttctaagtcaaatgatgcagggaagaggggaaagaagccaaatcggatcctaatgtcaacttctggtggtagacgttactgaattttgaaaggacgtgataaggaataatctgtctgtatatttaagagatgttttgcccttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="80460" stop="67584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80160" g_stop="80066" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80065" i_stop="75792" i_length="4274">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75791" g_stop="75703" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="184" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75702" i_stop="73669" i_length="2034">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.701" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73668" g_stop="73566" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="287" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73565" i_stop="73475" i_length="91">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73474" g_stop="73370" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="392" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73369" i_stop="71906" i_length="1464">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71905" g_stop="71788" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="510" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71787" i_stop="68410" i_length="3378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68409" g_stop="68251" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="669" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68250" i_stop="68103" i_length="148">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68102" g_stop="67884" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="889" r_length="220" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E730672" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80160" e_stop="80066"/>
          <exon e_start="75791" e_stop="75703"/>
          <exon e_start="73668" e_stop="73566"/>
          <exon e_start="73474" e_stop="73370"/>
          <exon e_start="71905" e_stop="71788"/>
          <exon e_start="68409" e_stop="68251"/>
          <exon e_start="68102" e_stop="67884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTGTCCTTATATGGCAATGACAAGAGCCTACAGAAAGACACAAGTGGCATTACTGACAGAGAAGAGATCAGTTCCTACAGTTTCTACCAGGTGAATTCTCATGATGATGTTGTTTTTTCCTACCAAGTATCCGTGTATTACATTTAGATGCATGTGCACCATTTAGAAAATGGACATTGGGCCTCACTCACTCCAAATGCTAGCTTATGTGGTGAGATTACCCAGAGATATATAAGGAGACCACAAACCCATTTCTTCAACCAATGTGAGGCACTTAACATCCTCCCCTCTCCTCCTGTCCTCCCCTGTATGTCAGGGATTGGACATTTGAAGAGTAGACAACATAACATGGTAGCCTGTATTGAGTACCAAAGAATAGGGATGAGTCTAACTCTGATGCCTCACCAAGAAAATGGACCTTAAGGTTAATTCATTCTAGAACTTAGCTCGTGAGGTGATTAGACCTTATAAGACAACAATAACCTATTTCTTCAGCAAATATAGAAATACTTAACAACAAAAGTATTAAGGTCACTTGCGCTTGACAAGTACCCAAAGAAATAGCCGCAGTGCACACACCAAGCTGGTAGGACACCATCATTAGCTAGTGATTTCTTTTGCTCTTTTTTCCATCAATAATGGACAAAAGATAACTATTTTTTTTATAACGATGATGCCATGTCCAGTTTGATGTGCACTATTTTACCTGGTTTCTGCCAAGCGCATGTAATAGGTGACTGAGCCCACCAAGGATGTCCAGCTTGGTGTGCACTATTTTACCAGGTACCTGCCAAATCGAAGTACTAGGTAGCTATGCCCAGTGGATTCAAGCATTCAACTGGTTGCTGGTGGGTGGGATGACTGAGCAAGTTTCAGGCTTTATTGTACTTTCAATGTGATTGTTTTATTTTGTTGAATCCACCTTCTCGGCTCTCATGAACATGTTCTATAGTGGGTTTTATGGTGCTGAGCAAAAACTATTGATGGATATAGATTATTTCCCTTACTTAAATTAATCAGACAAAGTGGGGTAAAACCATTTTCCACAAAGGAGGTTCCATTCTTAATTTTATGTGCCATTAGATTATTTGATATATCAACACAAGTAGCTGATAGAATTGTACATTATAGCACCTAGTGATGGGTATTCATTCAGAGTAAGGGGAAGCCCATGTACGCAAGATGTACCATATAAAGATACTCCCTCTATTCCAATTTATGTGGCTTACTTTCCTTTTTAGTCAGTAACAACAATTTAACTATAAGCTGTCTATTTTGCCCTTACTGAAATGATATTCAACCACACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAATCTTCCTTTCTTTCTGAAACTCCGTGTCGAGTGAAACTACCTCACATCAAATGGGACGGACTGAGGGAGTATATTTTCCATGAAGGTCATCTGATCTATCCTAGAAACTATATGTTTTGACCTCTTCAAAAAGAGGCTGAAAAGAGCGACAATCTTTTTCATTTGTGAATGTGTATTATTGACACGTTCAAATGCTCTCTTGCGCCTCTCCTCTTATTTTTTGAGAATTAGTACTGTTGTGTTCTTCAGCATTAAGGAATGTTGGCCACCTCCAAAAAGTTACAAGGTAGTAAGGTTAAACTTTTAAGTTTTATTGAGCACCCAAGAAATTTGTCATCTCCTCTACTTCTCCTGTATTGCTTCCCAAGATCTCAACTGTTGTAGGATTATTTCTTTTTTATGTTTCCAGTCTCCCTCGTTACTTCTACTCCACCGCACTAGTTCCTTCTTAAGGAGTTTTAATTTGTTAGCCAGAGTGAAGGCTGGTTTGCCCGTGTTAGGGAAGGACAACCATCATGCAAGACCTTCTGTTTGAATCCTTCTACCTCTAGCCACCAATTTTCAAATTTGAAGTAGTTCTTCTTGTAATTCCAAATCTCCATATGTTAGAAGAATAGGATTATGATCTGATCCTATTCTAGGTAACAAAGACTGCTTGACCAGTAGGAGAGAGTCCTCCCAGTCAACTGAGTGTAGGAATCTGTCAATCTTGGAGGCACTGTTGTGATTCTTCCCCTCGTCCATGTTTTTGATCCTCCAAGAAAAGGAGGATCAACTAGTTCCAGGTCATAAATAGCCTATGTCAGTTTACCTTCTCTCTCACAAACCTACTGATATTGAAGTCACCACACACTCCCCAAGGGCCCTCCCAGTTGTTATGTAGCTAGCCTCCAGTTCACTCCAGAACTCTCTTCTGATCACCCTATTTCAACTTGCATATACAGCACTCAGAAGTCATGTAATATCCTGACAAACACCTGTGAACGTACATGATATCATTTGTCCAGTAGAGTCTACCATCTCCCCCACCCATTCCCTTTTATCCCACATTATCATAATCCCTCCTCTGCTACCCCTGGCCTCCAACTGAACTTCTCCCACCCATCTATCAGCCCACAACTCCCTCAAAATATTGCACCTCTCCTTTTATCTTTGTTTCTAAAAGAACATAGATGTTTGCCCCCCGCTGGTGAATTAATTGTTTTACCAGTCTCCTCTTTTCTGTCCCATTTATACCCCTTATATTCCATGATATAATTTAATCTTCATTGGTGATGGTCTTCTTCCCTCCTTAGTTCACTCCTGGATTCACCATCCTTATAATTTACCTCAAAAATTAAATTCCTGAACTCTTTTGAAATCAATTGGTTGTTGACTTTGGCACTTCTCTTCTTTGGTCTAGTTTTTCAAAGAGGGCCTCGGCTTCCTTTTTAAAACCATAAAAATGGCTCCAAATTCCTTGTTCAGTTTAATTATGTTCACCCAAGATCTTGCATCAGACTTCATCCTGTTAATGCACTCACTTAAATCAGCTGATTTTGTGTACCTTCCCCTGTTTTTTTCATTCTACCACTTCCAACAATCAGTTCAGTTTCTGATCTCACCATAATCGGAGTTGTGCTCGCATCTGTTTCGTTGTTTGAGTTGACCCTCTGTGTGTGGTCCTCGACCCCCTCTCTTGCAGTTGTCTCCCTTGCTTCATCTTATAGTCGAAACTTGTCACAGTTCTCAACTCCTCCACAAAGCCCATAAGGGTGTTTATGTTTTCCATGAAAAGGCTCAGCTGGAATCTTTTCCTTATATGAGTTGTTTGTCTTTAAATTGTTCTGCCCTTTCTCATTGAAAGAAAAGAAGGGCCACTTTCATTCGATAAAGGAGGCTCATTTTCATTTAAAATAAGAGATGGCCCAACAGATGGTCTGGAATAGAAGTGGTCCAGTGGCCCTGCTCTTTTACTGCAGCCAACCACTTGTCCATTGTTTTTATTCTCTGTGTAAAGCCCCCAGTCTTCTCCATTACCCAACAGATCTTGCATTGCTATCTCTTTCCCCTTCATCTGCAATTCCTTTCTCCACAGACATCTGACACAAGCTGTCATCCCATTTTTATGAGAACATTTGTCCCCTCTTGGTTGTTCAACAACCCTACCTTTTTTCAACTTTTCAAATCTTGCTGGTGCCTCTACCCATATCAGTAAAGTGAACCTCCATTCCCCATCCTCGACTACAACCGAAGTCAGAATATCTTCCGCGGTCCTTTTACTTTAATTCAAGCCCATCTCAAATGATTTTTGAGCTCTATCTCCTCTTCCGTCGTCAACCATCCCCTACACTTCTTCCCAATTTCCTTCATAACCCCTGCTGACCAAAGTTGGAGTGGCGGACCTAAAACCCTTATCCAATAGCAGTTAAAACTAGTATTGGTAGGGCGCACCCAGGTGTCCACCAATTAAGCTTGAGTTTGCTTCCCTGCTTTCTCCAAGAACCTTCCATAACATGCTCCACCCTTCACACTTTGGAACTCAAACAGGAATTGAATCCCGTTCATGTCAAAAACTTGGATGTTATGGATTCTGACCCAAGACTGGTGAGCCCATTTCCATACATCGTTTCTTGAGGGAATATCGTCGCACTTGGGAAACTGCCACTAAGCATTTTCTTAGGAGGGCATTCATTTAATGGTCATCTTGATTGCGTGGGGGTCATTTTTTATGCTTTCTTCTGATTTTGCTTACTTCTTCCCTTCAGCTCGGTGACAACTACTTTATGCATCCTAGCATAACAGAGTTCATGTCAAACTAAGCATAACATTTGACAGCTTTGCAGCCTCAATTTCCTTTGTCAAGTCGAACTAAGCTTTAACGCCACAATCTCTCGTCAACAATATCACATGTTGGGAACTTTCCTACAACTGTTTTTCGTGTTGCCTCTCTGCGCGTTTAGTTATTATCCTTCACTTTATGCTGAGTGATATGTAATGCACAGCTTTATACATGTTTTATAGTGCCTGTTTTTTTCAGGCAGTTGATGGTCAGCACCTTATCCTCCATCCACTGAACATGAAGTGCCTTCTGCATTACTACGGTGGCTACGGTGGTCTTCCTAACAGGTTTGAAGATAATTACATTCTTACAGTAAGTTATGCTATATTTTTCCAGTGAAAGATGACAAAGGGGTCTCTGTTTGTTGTTTTCAGAGAAACTGCAAAGCTGATGACCCATTGAACTCAATTTTGATACATGTAGCTTGTTCTAAACTTACCTGCATTTTAAGGCGACAACTATTAGATTGAAAAAATGTACTGTGTGTGGATTGAGTTATTCCTTTTGCTCCCAGTTGTTTGATAGAAGTTGCAATTCGGCCCCTATTCTTCTGTGGTACTATTTGTCCTTGATAAACTTTTCTGTTTCAGATGGTCCTTGGTGATATTAGCTACAAAAATGTAGCTTTATTTTGAGCACATGTGACCTCACTGGACAAAGTTTGGAGGTATAATTTGAAAAAAAAAACTTCTTATGATAGATAGCTGGCAAACCAACAAACAGATCAAATCCCAGTTCGACTCTCACTTTTCATCAGAAATAAGCTAGTCAGAAAGGGATTCTGAATGAGTTGCTGTGTGAAGGGGGAATTTTGATGATTTCGGTGAGCAAAGGAAGGGCAGGATGATGTATCTGAATCACAGGGAGAAAAATGGTGACAACAAGTTCCGGAGAGGGACAGAGATAATGAATAGTGACTGGGAAAGGAGTAGGATATATGCTAGACTTAGTGTGTAGAGGAGTTTATACAGGGCTCTAGGGTGGGCAGGGGGCCTCAGAGGGTGCTAGAGTATGAACTATAAGGGGCACTGAGAGGAGAACTTCTGCAGCAATGGAGGAATGTTCTTTTTTGAGATAAAAATATATATATATTTTTTTAAAAAATCATTTCAAAAAGCATGTGTAAACAGAGTGGCCGTCCTGGCAGTGTCAACAGTCTGTTGAATGGGGTCTTACCTTTTCTTTACATTCTTTCTTGGCTCGGTTATCCTTTCTCTTACTGGTTAATTATTTTGCTCCAACTTCATCCATAATTTTCACCATATCTTGGCTTGTCCAATTTCACCCTTCAGTCAAATTTTTAGGTTCATCTAAAGACCAAATCATTAACTGGTGAAGCCAGTGCAAGTTAGGTCAAACATTTTGGGTAAGATGAATGTTACCATATGTGCTTTTTGGAGGTAAGAACACTGAGGTCTATGTTAATGTTCCTCCAGTCCTTTAAAAGGATTTCCTTGTTATTTATATGCATTTTCTAAAGGCCCCTTTTTTTTCCAAAATACGAAGTGGTGTGTATTAGTAAACCTTATATAAGGTACATTAAAAGGAAAAAAAGGGCTTACACATGACATGAAAGGGTAGAGTTCCTCACCCGTTAGATTTCCAGATTGAATCTCATTTCAACCCCCTTTACCTTCTCTGGCCCACTCAACAGGAGGTTAGCGAGCTTCATTTTTGGTTCTTGAATTGGGTGGGATTCAAACTGTATTTGGGTAGGGGAGAGCATATGATTCGGACATATTCTAGAGCACCTGTATTGGTAAATAGACCAGAAGGGGTTGGTGATGGTGATTTCCTTTCGCTTTCAAAGGCCATAGGGAGGGGTTGGTTTGCTATGATGGAGTCATGGAGTCCAGTTAACCTTTTGGATTTTGTTAGCTCCCTTTTAGTCAATATGTTGTATTGAAGCTAACATTACTTTTACTACTTGCATCCAGTTAATGCTATTAATGATATACTTCATTTAAAAAAAAAAGACATAAAGGGCAAGGTTGGATAGATGGGTGTTTAGAAAAGGCACAAAGTTACCGCTTGCTGTGACAGTGTTCTATTTGTTTTTTTTTCTTTGGGGGGGTAGAGGGGGGGGGGGGGGTGAACTGTGCCATGTGCTGAGAGAGGGTATTGGTCTATGTGGGGAGAGACAGAGGCTAAATGGTGGTAAATACCATGCTTACCTGAAAGTGGACAATTATCTAGAGCAGCGAATGCTGTAGCGAAACTGATTGCAAAAGATAACATTATACCTGCCGATGTGAGTGTGTTTTGACCATATGCCTTTTTGTTATTCCACAACAACTTATTAGAGAAAATCTTGGCTACAGAATCAGTGGAAAGATTTTACAAATGGAGTCCGTGACGCAATCGGAGGCCATGAGAAGGCGTTACCGCTTCCTAAGTCATTTTTCTTTGACAACAACATTTCAGGTACTTGTTATGATGCTTATTTCTGGAAGTGTGCTGACTTCACTTCATTAATGGTTTGATCACTCTAATTATTTTCACTTGTAATTTCCAGCTTTGTGAAATTGATCTCAGCAAGATAATGCCCATGGATGCACTTTCTCCCTTTATGGAGGAAATCAGAAGTAGGGAAAAACAAAGGACGTGGCTAGCTAGGAAGGTTTGTAACCCACACTTTCATCAGAATTACAGCTGTTTTTTCTTTTCTTGTGCAAAATGGTTTAGCATCATGGGTTTATGATGTTTAGAAAAGCCCCCAGTGTGAACAGCAGAAGTTGCTTAAAGATTCAAGTGCAGGATGAAGGAACTTTCTAGAGAGAAAATGTGTAGGACTCTACTTACATTTTTGGCTTAATACACAAACAATTCGTTGAACTTACCACTAAATTTCATTTAGACACTCCAACTACGGCATGTTTCCAATTAATCACCTAAACAAGTAAGTTCAAATCTTTGATTTCTTTTTTCGCGTGCTCTCAAATGTACGTAAATAAGTTAAGCACTTATGTCACATTCTTTAATTATACGCATTAGCCTTAGTAAGCTTTAAAATCTCAGGCTTGTTCTAATTGTGGTTGATGTGTATTATTAACATCGATACATATTTACTGTGGTTAACTTAATTACCTAATAGATGTTTGAGAATATATGTAAAAGCTTCACTTTCTTTTGAGCTCGTCATTTGAATAGAATGTCCTATGTGAGTGGGCTAGTATTCATGTCCTCTCCTCTTAACCATAAACATCTTGATTTTGTCACCATGAGGTTTCTTCAGCTTTAGCAATCTCTCCAACTCTATTTTCAGGTTCAAGAACCTTGAGTTGGAATTCTGTTTTTTTTTTTTGGATGACTGTGGTGTCCGGGCCAGCTTCCGCGCACCTCGACTAATTCCATAGGATACCTGCCACCTTCCACCAGCAACAAGTACTAGGTAACTCTGTCCACCAAGGCTAGGGATGGGAAGAATCACCTAGTGCTTTTTATATCCGCTGAGTTAGTTGGAATTCTGTTTTCTCTTGCCTGTTCTAAAGCTGAAAGTCATCTAGAGCCCCGCTTCTACTTGTTTCTAGCTTGCCATATACTTCCCTGTTCCAGTTGTAGTCCTTTTTTCAAGTTCCTTAACTTCTATGTTCTAAGTACAAAGTCTGGACTGCCACCTGTTGTGTAATTCTGCCACCACCTCTTCACCATATCAGTGAACCCCATTTGTTGAAGCCTTATATTTTCAAACTTGATGTAAGATGGTGTTGAGTACCAGTCTTCACCTTGTAGCAGAAGAATTTTGTGGTCTGAATATTGAAATGCCGCCTGGCAGTGTCAACTGCTTGATAGCTTTGAAGCTTTCATTCCAGTATGAAAGTTAAGGAACCTATCAATTCTTGAGGCTTGTAGAGTGTCATCCCCTCTTGACAAAGTGTATTGTGCCCCTCGCAAGGCAAATCCATTCGCTGAAGGTCCAAAAGCGTTTCTGAGAAGCTCCTCATAGCTTGGTCCTTCTGGTGCACTTTAGCCTCTCATTCTCATGATATACGAAGTTGACAGTGCGCACAATTTAAAAAGGAATTTGGTTTGGATGATTCCTTTTATTGAGGAGATTCTCAAAGTTGATATTTTTCTTTTTCAGGAACGGCGTGAACAAGTTAAAGCTGAAGCCATTGGCATGTACTTAGAGCCTTTGCCTTTTAGCTTTTCAGAACCTTCTTTCACAGAACAACCTACTTTCACTAGCAATGACTTCGAAGGTACGTAAAATATTGCTATTTTATATAACAAATTTTATGCTCTCATCTTATGTGCTTTGGCATTTTAACCATCCTGGAGTATAATCCCCACCCCCACCCCCACCCCCACTTCAGAAATGAACCAGTGGAATCTAGAGGGGATAAATAAACCCAACGATACAAAAACATGAGGCAATTAACTTTTAAAGATTGGTAGGTAGTTGATATTCCATCAAAGCATCTTGATGGTGCTATCAACTTTCCTGCAACTCCAGCTTATCAAAACATCTCTGATATTCTGAGGCTTGACCCATTTGAGATCAAAAAGAGCTTAAAACATACTCCATAAGTCAGCTGCTATTTGGCATTGTAGAAATAGGTGATTGTGTGTTTCTGCTTCCTTCATGCTTCCGTCATTACTTGGATTGTTATAAGACAACTGTATTCCTTTAAGTACATTACTTTCATTAAGAGAGTTTAAAGTGCTTATCTTGTGTATGCTATTGATTTGTGTGATTATCTCATCTAAATGCGTAAACTGTTAGAGAGAGGAAACATTTCTATTCTTTTAACTGGTGAATTTTTTCTCACATCACACGGATTAGAATTATCATATAATCTCTCTCTTCTGGAATGAATATATTGAAATATTTTCGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTCATTCTTATTACTTTTTCAATATGAAAACGGAATGAACATCTGTTCTAGTATATTTCTTTACTCTGCTTATATCACAAATATTTCTGAAGAGATCCTCATATCAAAAGCTTCATTAAATAGGGAATGAAGTCCTTCTAAGTCTCTCCTGCCTTTACCTTTTTAGATCGACATCAGTCATTCTTCCATTTACTTCCCTTCAACTCTTCTCTCCCATCAAAAAGCTTTTTATTGTTCATTATCTATATTTATATTTTGACGGCCTCTGAATAAGGATAAGATATCACTAAGAGACGTGAACTTGATCAGTTATGAAAGAAACTACTATTATGTTGATAGTCATTGGTATTGCGCTAATTAACTATTATTGTGTTTCATGGGTGTAAAGCAAATCATTTTCTAAGTTATCACATTACAAACATTAAACGATATCAAATTACTAAGCAATGTCAATATGCCTACTAAAAAAAGTACAAGAGTGAAAAATATCAAATACTAAGAACAGAAAACACTTGCTAAGCAAATAAATCTGAACATCTTTAAATCATCATATTGAAAAAGTTAATTAACTAAATATCAATATCGTCATATAAACCTTTAACACCCGACATATACACAGAGAACCGAAGCTATAATCTCACCTTGATAATTTCAATCCTTAATTCTTATAGTCTCTATCTCCTCTGTTAAAGTTTTCTTCCATGTCAATTATGGTCTTAAAATCCTCTTTGAAGAATTCTGAAATTAAAAAAAAAAGTATTTTAAAATTGAAAAATAATCACAAACCTGGCCTAGACTCTTTTCTTCATTTTTGCTGCTTGAAATTTACTATTGTTACATCTTTTTTCAACTTCTCATTTGTTGCTTCCTTCTCCCATTCCTCCACCTCTTATATGTAAGCATCACTATTTTAAGTCCAATCATTGCTCCAAAGGCTGGATCATGTCTTCTAGTTACTCATTGACTATTCATTTCTAAAGCTTAATTGCGTAGTAATTACATTAACAGAGAATTAAGAGAATCAATTTTTATTTATGCCCAACATACTATAATTGTCAAAATATGCTAAGTTAGGCTTCTTTAGGGAAGCGAAAGGGCTGCATTAATGTTTCTTTGATAAAAAAATTTGTGGCCTCTAAGATAATGTGAGTTGACTGAAAAGGAACATGGAGTATGAAAGGTTGGGTAGTGATAATTCAATTTTTTCAGAGTTGGAGACTTTTTTTAAAAAATATAGGACAGAAATGGAAAAATAGGAAAAAGGCCAAAAAAGATAACTGTATTTCTTGGCCAAAGAGGGGTTCCGCATCACTCTTCTTTTGCCTACCTTTGTCATAATATATATATATATATATATATAGTCTCTTCAATACGTCCCCTCATGTGTGAGCCTGATTCAATTCATGGTAATCATGTGGAATTCACTTTGATAAATGGGTTGCAATGAGATTTGGAATCAGGATCTCTGCCTGTTCTGCTACCATTGTCATGCACTGATATCTGAGTGTGCGAACTCTTCACTTTTGGTGCTGCACTCTTGTCGACACGACGTGGGTGTGGGATCCATGCCGGATGTGGTCTATCAGTTTTGAGTACTTTGACCGAAACCGATATAGAAATTTGAGACAGATATAATGATGCTGAAATCAAAACAAAAGGTAGGGTGAAATCATAATTTGGGCAGATGTTTCTTTTGTCATTGGAAGGTATTTGTATGAAAAAGTCAGCAATCAGAATGTGCTTTAAAGATGTCTACAGGTCAAACACTAGTATGTGCAATGTACTCAAGAAGTTTAGCACGACCTGTTGTATCATTTGCAATAGCCATGTTACACCAATAAAACTGTAAGAAGATGCATTTGTTTTTAATAATAATTAAAGAACAAAGTTTGCTCTAAAGAAATTGTGCATTCCTTCATTCCGACTTGTCCATAATTTAGGCAGATTTTCATAAATCTACTTTTAGATATTTAAATTAGTTTTAGTTGAATCTCTGCACCCATATTCATACTTGGATCTATATGAAGGATCCCGACCTCTAGATCTGCCCCGTATCGTACACCTGCACCCCAGTCCGAGCAACAGTGGCGTAGCCACATGGTGGTCAGGGTGTCCAAGAAAAAAATATTGTATATACAAGTAAAATGATATACGAAATGATTAAATAACATATCTTGGACACCCTTAACATAACAAGTTGTAGCTCAGTGGTTTCGCCCTCTTGGAATGAGGACGTGCTCGTGTGTTCAAATCTCACTAGTTCTATTTTTTGAAAAGAGCTTTTGTTGTGCTATTTCTGGACACCCTTTGTGAAGTTCCTGGCTCCGCCACTGCCGAGCAGCTTAGTTTGGTACCATGTTAAGTTAAGTCTATGACCATCACATTTAAAAGTTCAAGCGGTTTGAGGGAGCACATTGTTATCTGCTTAATTATGTTTCAACATATACAATCACATTTCATGGTACAATCCTGTCACTCAAAACTGTTGTAGAAAATGGTTACTTTAGTAAGCTAAATTGAAGCTTGATAGTGGTGATCTTTCAGAAGTTTGACTTTTACTATTAGTACTTCTTCATGAATGCAAAAGCCTTGCTATTTGATCTGTATTTTTGAAGTTTTTACGATATTACGTAGGTACTAACCATCTTCCCATTAGTTGAAATGACTGTTGTTGTGTTTGTATTTGTGATAAGCTTTGGGAAGTACGAGTGTTACTGTAACATCATCAAGCTCCCCTGTGCCTGGAGGCAGGCAACTGTTCTCCAATGTTGCAAGGCTTGGTTTTGCTGCTGGATGTGATCCTCCAGCGCTGAAAATGGATGAGTCTGCACGTGGTTCTTCTGTTGCAGCTGGTATCTTTTTAAACTCCTACTTGGCTATTGACATTGAGTACCTGCTATGATCCGAATAATTGTTTGTCATGTTTTCGTCACAGTTTTCGTGGAATGTGTTATTGTTTCGTTTTGCTTTATCATAACCACTGGACTTTATTTCTCTCAGGAACGAGGAGTCCTGGAATCCTGTCCTTTGCAAATGTAACCTCCAAAGCAAAAGCTGTTGAAGGTCCCAATGCTTCTAAGTCAAATGATGCAGGGAAGAGGGGAAAGAAGCCAAATCGGATCCTAATGTCAACTTCTGGTGGTAGACGTTACTGAATTTTGAAGGGACGTGATAAGGAATAATCTGTCTGTATATTTAAGAGATGTTTTG-CCTTTTATT</genome_strand>
        <mrna_strand>CTTCTTTGTCCTTATATGGCAATGACAAGAGCCTACAGAAAGACACAAGTGGCATTACTGACAGAGAAGAGATCAGTTCCTACAGTTTCTACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGATGGTCAGCACCTTATCCTCCATCCACTGAACATGAAGTGCCTTCTGCATTACTACGGTGGCTACGGTGGTCTTCCTAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGTGGAAAGATTTTACAAATGGAGTCCGTGACGCAATCGGAGGCCATGAGAAGGCGTTACCGCTTCCTAAGTCATTTTTCTTTGACAACAACATTTCAG...........................................................................................CTTTGTGAAATTGATCTCAGCAAGATAATGCCCATGGATGCACTTTCTCCCTTTATGGAGGAAATCAGAAGTAGGGAAAAACAAAGGACGTGGCTAGCTAGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGCGTGAACAAGTTAAAGCTGAAGCCATTGGCATGTACTTAGAGCCTTTGCCTTTTAGCTTTTCAGAACCTTCTTTCACAGAACAACCTACTTTCACTAGCAATGACTTCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGGAAGTACGAGTGTTACTGTAACATCATCAAGCTCCCCTGTGCCTGGAGGCAGGCAACTGTTCTCCAATGTTGCAAGGCTTGGTTTTGCTGCTGGATGTGATCCTCCAGCGCTGAAAATGGATGAGTCTGCACGTGGTTCTTCTGTTGCAGCTG....................................................................................................................................................GAACGAGGAGTCCTGGAATCCTGTCCTTTGCAAATGTAACCTCCAAAGCAAAAGCTGTTGAAGGTCCCAATGCTTCTAAGTCAAATGATGCAGGGAAGAGGGGAAAGAAGCCAAATCGGATCCTAATGTCAACTTCTGGTGGTAGACGTTACTGAATTTTGAAAGGACGTGATAAGGAATAATCTGTCTGTATATTTAAGAGATGTTTTGCCCTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256156" ref_strand="+" ref_description="SGN-E256156 [cLEG-37-G15]">
      <seq>attttacaaatggagtccgtgacgcaatcggaggccatgagaaggcgttaccgcttcctaagtcatttttctttgacaacaacatttcagctttgtgaaattgatctcagcaagataatgcccatggatgcactttctccctttatggaggaaatcagaagtagggaaaaacaaaggacgtggctagctaggaaggaacggcgtgaacaagttaaagctgaagccattggcatgtacttagagcctttgccttttagcttttcagaaccttctttcacagaacaacctactttcactagcaatgacttcgaagctttgggaagtacgagtgttactgtaacatcatcaagctcccctgtgcctggaggcaggcaactgttctccaatgttgcaaggcttggttttgctgctggatgtgatcctccagcgctgaaaatggatgagtctgcacgtggttcttctgttgcagctggaacgaggagtcctggaatcctgtcctttgcaaatgtaacctccaaagcaaaagctgttgaaggtcccaatgcttctaagtcaaatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="73955" stop="67712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73655" g_stop="73566" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73565" i_stop="73475" i_length="91">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73474" g_stop="73370" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="195" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73369" i_stop="71906" i_length="1464">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71905" g_stop="71788" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="313" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71787" i_stop="68410" i_length="3378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68409" g_stop="68251" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="472" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68250" i_stop="68103" i_length="148">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68102" g_stop="68012" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="563" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E256156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73655" e_stop="73566"/>
          <exon e_start="73474" e_stop="73370"/>
          <exon e_start="71905" e_stop="71788"/>
          <exon e_start="68409" e_stop="68251"/>
          <exon e_start="68102" e_stop="68012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACAAATGGAGTCCGTGACGCAATCGGAGGCCATGAGAAGGCGTTACCGCTTCCTAAGTCATTTTTCTTTGACAACAACATTTCAGGTACTTGTTATGATGCTTATTTCTGGAAGTGTGCTGACTTCACTTCATTAATGGTTTGATCACTCTAATTATTTTCACTTGTAATTTCCAGCTTTGTGAAATTGATCTCAGCAAGATAATGCCCATGGATGCACTTTCTCCCTTTATGGAGGAAATCAGAAGTAGGGAAAAACAAAGGACGTGGCTAGCTAGGAAGGTTTGTAACCCACACTTTCATCAGAATTACAGCTGTTTTTTCTTTTCTTGTGCAAAATGGTTTAGCATCATGGGTTTATGATGTTTAGAAAAGCCCCCAGTGTGAACAGCAGAAGTTGCTTAAAGATTCAAGTGCAGGATGAAGGAACTTTCTAGAGAGAAAATGTGTAGGACTCTACTTACATTTTTGGCTTAATACACAAACAATTCGTTGAACTTACCACTAAATTTCATTTAGACACTCCAACTACGGCATGTTTCCAATTAATCACCTAAACAAGTAAGTTCAAATCTTTGATTTCTTTTTTCGCGTGCTCTCAAATGTACGTAAATAAGTTAAGCACTTATGTCACATTCTTTAATTATACGCATTAGCCTTAGTAAGCTTTAAAATCTCAGGCTTGTTCTAATTGTGGTTGATGTGTATTATTAACATCGATACATATTTACTGTGGTTAACTTAATTACCTAATAGATGTTTGAGAATATATGTAAAAGCTTCACTTTCTTTTGAGCTCGTCATTTGAATAGAATGTCCTATGTGAGTGGGCTAGTATTCATGTCCTCTCCTCTTAACCATAAACATCTTGATTTTGTCACCATGAGGTTTCTTCAGCTTTAGCAATCTCTCCAACTCTATTTTCAGGTTCAAGAACCTTGAGTTGGAATTCTGTTTTTTTTTTTTGGATGACTGTGGTGTCCGGGCCAGCTTCCGCGCACCTCGACTAATTCCATAGGATACCTGCCACCTTCCACCAGCAACAAGTACTAGGTAACTCTGTCCACCAAGGCTAGGGATGGGAAGAATCACCTAGTGCTTTTTATATCCGCTGAGTTAGTTGGAATTCTGTTTTCTCTTGCCTGTTCTAAAGCTGAAAGTCATCTAGAGCCCCGCTTCTACTTGTTTCTAGCTTGCCATATACTTCCCTGTTCCAGTTGTAGTCCTTTTTTCAAGTTCCTTAACTTCTATGTTCTAAGTACAAAGTCTGGACTGCCACCTGTTGTGTAATTCTGCCACCACCTCTTCACCATATCAGTGAACCCCATTTGTTGAAGCCTTATATTTTCAAACTTGATGTAAGATGGTGTTGAGTACCAGTCTTCACCTTGTAGCAGAAGAATTTTGTGGTCTGAATATTGAAATGCCGCCTGGCAGTGTCAACTGCTTGATAGCTTTGAAGCTTTCATTCCAGTATGAAAGTTAAGGAACCTATCAATTCTTGAGGCTTGTAGAGTGTCATCCCCTCTTGACAAAGTGTATTGTGCCCCTCGCAAGGCAAATCCATTCGCTGAAGGTCCAAAAGCGTTTCTGAGAAGCTCCTCATAGCTTGGTCCTTCTGGTGCACTTTAGCCTCTCATTCTCATGATATACGAAGTTGACAGTGCGCACAATTTAAAAAGGAATTTGGTTTGGATGATTCCTTTTATTGAGGAGATTCTCAAAGTTGATATTTTTCTTTTTCAGGAACGGCGTGAACAAGTTAAAGCTGAAGCCATTGGCATGTACTTAGAGCCTTTGCCTTTTAGCTTTTCAGAACCTTCTTTCACAGAACAACCTACTTTCACTAGCAATGACTTCGAAGGTACGTAAAATATTGCTATTTTATATAACAAATTTTATGCTCTCATCTTATGTGCTTTGGCATTTTAACCATCCTGGAGTATAATCCCCACCCCCACCCCCACCCCCACTTCAGAAATGAACCAGTGGAATCTAGAGGGGATAAATAAACCCAACGATACAAAAACATGAGGCAATTAACTTTTAAAGATTGGTAGGTAGTTGATATTCCATCAAAGCATCTTGATGGTGCTATCAACTTTCCTGCAACTCCAGCTTATCAAAACATCTCTGATATTCTGAGGCTTGACCCATTTGAGATCAAAAAGAGCTTAAAACATACTCCATAAGTCAGCTGCTATTTGGCATTGTAGAAATAGGTGATTGTGTGTTTCTGCTTCCTTCATGCTTCCGTCATTACTTGGATTGTTATAAGACAACTGTATTCCTTTAAGTACATTACTTTCATTAAGAGAGTTTAAAGTGCTTATCTTGTGTATGCTATTGATTTGTGTGATTATCTCATCTAAATGCGTAAACTGTTAGAGAGAGGAAACATTTCTATTCTTTTAACTGGTGAATTTTTTCTCACATCACACGGATTAGAATTATCATATAATCTCTCTCTTCTGGAATGAATATATTGAAATATTTTCGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTCATTCTTATTACTTTTTCAATATGAAAACGGAATGAACATCTGTTCTAGTATATTTCTTTACTCTGCTTATATCACAAATATTTCTGAAGAGATCCTCATATCAAAAGCTTCATTAAATAGGGAATGAAGTCCTTCTAAGTCTCTCCTGCCTTTACCTTTTTAGATCGACATCAGTCATTCTTCCATTTACTTCCCTTCAACTCTTCTCTCCCATCAAAAAGCTTTTTATTGTTCATTATCTATATTTATATTTTGACGGCCTCTGAATAAGGATAAGATATCACTAAGAGACGTGAACTTGATCAGTTATGAAAGAAACTACTATTATGTTGATAGTCATTGGTATTGCGCTAATTAACTATTATTGTGTTTCATGGGTGTAAAGCAAATCATTTTCTAAGTTATCACATTACAAACATTAAACGATATCAAATTACTAAGCAATGTCAATATGCCTACTAAAAAAAGTACAAGAGTGAAAAATATCAAATACTAAGAACAGAAAACACTTGCTAAGCAAATAAATCTGAACATCTTTAAATCATCATATTGAAAAAGTTAATTAACTAAATATCAATATCGTCATATAAACCTTTAACACCCGACATATACACAGAGAACCGAAGCTATAATCTCACCTTGATAATTTCAATCCTTAATTCTTATAGTCTCTATCTCCTCTGTTAAAGTTTTCTTCCATGTCAATTATGGTCTTAAAATCCTCTTTGAAGAATTCTGAAATTAAAAAAAAAAGTATTTTAAAATTGAAAAATAATCACAAACCTGGCCTAGACTCTTTTCTTCATTTTTGCTGCTTGAAATTTACTATTGTTACATCTTTTTTCAACTTCTCATTTGTTGCTTCCTTCTCCCATTCCTCCACCTCTTATATGTAAGCATCACTATTTTAAGTCCAATCATTGCTCCAAAGGCTGGATCATGTCTTCTAGTTACTCATTGACTATTCATTTCTAAAGCTTAATTGCGTAGTAATTACATTAACAGAGAATTAAGAGAATCAATTTTTATTTATGCCCAACATACTATAATTGTCAAAATATGCTAAGTTAGGCTTCTTTAGGGAAGCGAAAGGGCTGCATTAATGTTTCTTTGATAAAAAAATTTGTGGCCTCTAAGATAATGTGAGTTGACTGAAAAGGAACATGGAGTATGAAAGGTTGGGTAGTGATAATTCAATTTTTTCAGAGTTGGAGACTTTTTTTAAAAAATATAGGACAGAAATGGAAAAATAGGAAAAAGGCCAAAAAAGATAACTGTATTTCTTGGCCAAAGAGGGGTTCCGCATCACTCTTCTTTTGCCTACCTTTGTCATAATATATATATATATATATATATAGTCTCTTCAATACGTCCCCTCATGTGTGAGCCTGATTCAATTCATGGTAATCATGTGGAATTCACTTTGATAAATGGGTTGCAATGAGATTTGGAATCAGGATCTCTGCCTGTTCTGCTACCATTGTCATGCACTGATATCTGAGTGTGCGAACTCTTCACTTTTGGTGCTGCACTCTTGTCGACACGACGTGGGTGTGGGATCCATGCCGGATGTGGTCTATCAGTTTTGAGTACTTTGACCGAAACCGATATAGAAATTTGAGACAGATATAATGATGCTGAAATCAAAACAAAAGGTAGGGTGAAATCATAATTTGGGCAGATGTTTCTTTTGTCATTGGAAGGTATTTGTATGAAAAAGTCAGCAATCAGAATGTGCTTTAAAGATGTCTACAGGTCAAACACTAGTATGTGCAATGTACTCAAGAAGTTTAGCACGACCTGTTGTATCATTTGCAATAGCCATGTTACACCAATAAAACTGTAAGAAGATGCATTTGTTTTTAATAATAATTAAAGAACAAAGTTTGCTCTAAAGAAATTGTGCATTCCTTCATTCCGACTTGTCCATAATTTAGGCAGATTTTCATAAATCTACTTTTAGATATTTAAATTAGTTTTAGTTGAATCTCTGCACCCATATTCATACTTGGATCTATATGAAGGATCCCGACCTCTAGATCTGCCCCGTATCGTACACCTGCACCCCAGTCCGAGCAACAGTGGCGTAGCCACATGGTGGTCAGGGTGTCCAAGAAAAAAATATTGTATATACAAGTAAAATGATATACGAAATGATTAAATAACATATCTTGGACACCCTTAACATAACAAGTTGTAGCTCAGTGGTTTCGCCCTCTTGGAATGAGGACGTGCTCGTGTGTTCAAATCTCACTAGTTCTATTTTTTGAAAAGAGCTTTTGTTGTGCTATTTCTGGACACCCTTTGTGAAGTTCCTGGCTCCGCCACTGCCGAGCAGCTTAGTTTGGTACCATGTTAAGTTAAGTCTATGACCATCACATTTAAAAGTTCAAGCGGTTTGAGGGAGCACATTGTTATCTGCTTAATTATGTTTCAACATATACAATCACATTTCATGGTACAATCCTGTCACTCAAAACTGTTGTAGAAAATGGTTACTTTAGTAAGCTAAATTGAAGCTTGATAGTGGTGATCTTTCAGAAGTTTGACTTTTACTATTAGTACTTCTTCATGAATGCAAAAGCCTTGCTATTTGATCTGTATTTTTGAAGTTTTTACGATATTACGTAGGTACTAACCATCTTCCCATTAGTTGAAATGACTGTTGTTGTGTTTGTATTTGTGATAAGCTTTGGGAAGTACGAGTGTTACTGTAACATCATCAAGCTCCCCTGTGCCTGGAGGCAGGCAACTGTTCTCCAATGTTGCAAGGCTTGGTTTTGCTGCTGGATGTGATCCTCCAGCGCTGAAAATGGATGAGTCTGCACGTGGTTCTTCTGTTGCAGCTGGTATCTTTTTAAACTCCTACTTGGCTATTGACATTGAGTACCTGCTATGATCCGAATAATTGTTTGTCATGTTTTCGTCACAGTTTTCGTGGAATGTGTTATTGTTTCGTTTTGCTTTATCATAACCACTGGACTTTATTTCTCTCAGGAACGAGGAGTCCTGGAATCCTGTCCTTTGCAAATGTAACCTCCAAAGCAAAAGCTGTTGAAGGTCCCAATGCTTCTAAGTCAAATGATGC</genome_strand>
        <mrna_strand>ATTTTACAAATGGAGTCCGTGACGCAATCGGAGGCCATGAGAAGGCGTTACCGCTTCCTAAGTCATTTTTCTTTGACAACAACATTTCAG...........................................................................................CTTTGTGAAATTGATCTCAGCAAGATAATGCCCATGGATGCACTTTCTCCCTTTATGGAGGAAATCAGAAGTAGGGAAAAACAAAGGACGTGGCTAGCTAGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGCGTGAACAAGTTAAAGCTGAAGCCATTGGCATGTACTTAGAGCCTTTGCCTTTTAGCTTTTCAGAACCTTCTTTCACAGAACAACCTACTTTCACTAGCAATGACTTCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGGAAGTACGAGTGTTACTGTAACATCATCAAGCTCCCCTGTGCCTGGAGGCAGGCAACTGTTCTCCAATGTTGCAAGGCTTGGTTTTGCTGCTGGATGTGATCCTCCAGCGCTGAAAATGGATGAGTCTGCACGTGGTTCTTCTGTTGCAGCTG....................................................................................................................................................GAACGAGGAGTCCTGGAATCCTGTCCTTTGCAAATGTAACCTCCAAAGCAAAAGCTGTTGAAGGTCCCAATGCTTCTAAGTCAAATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248536" ref_strand="+" ref_description="SGN-E248536 [cLEF-59-D8]">
      <seq>agaaagacacaagtggcattactgacagagaagagatcagttcctacagtttctaccaggcagttgatggtcagcaccttatcctccatccactgaacatgaagtgccttctgcattactacggtggctacggtggtcttcctaacagaatcagtggaaagattttacaaatggagtccgtgacgcaatcggaggccatgagaaggcgttaccgcttcctaagtcatttttctttgacaacaacatttcagctttgtgaaattgatctcagcaagataatgcccatggatgcactttctccctttatggaggaaatcagaagtagggaaaaacaaaggacgtggctagctaggaaggaacggcgtgaacaagttaaagctgaagccattggcatgtacttagagcctttgccttttagcttttcagaaccttctttcacagaacaacctactttcactagcaatgacttcgaagctttgggaagtacgagtgttactgtaacatcatcaagctcccctgtgcctggaggcaggcaactgttctccaatgttgcaaggcttggttttgctgctggatgtgatcctccagcgctgaaaatggatgagtctgcacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="80424" stop="67969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80124" g_stop="80066" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80065" i_stop="75792" i_length="4274">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75791" g_stop="75703" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="148" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75702" i_stop="73669" i_length="2034">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.701" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73668" g_stop="73566" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="251" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73565" i_stop="73475" i_length="91">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73474" g_stop="73370" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="356" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73369" i_stop="71906" i_length="1464">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71905" g_stop="71788" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="474" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71787" i_stop="68410" i_length="3378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68409" g_stop="68269" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="615" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E248536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80124" e_stop="80066"/>
          <exon e_start="75791" e_stop="75703"/>
          <exon e_start="73668" e_stop="73566"/>
          <exon e_start="73474" e_stop="73370"/>
          <exon e_start="71905" e_stop="71788"/>
          <exon e_start="68409" e_stop="68269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGACACAAGTGGCATTACTGACAGAGAAGAGATCAGTTCCTACAGTTTCTACCAGGTGAATTCTCATGATGATGTTGTTTTTTCCTACCAAGTATCCGTGTATTACATTTAGATGCATGTGCACCATTTAGAAAATGGACATTGGGCCTCACTCACTCCAAATGCTAGCTTATGTGGTGAGATTACCCAGAGATATATAAGGAGACCACAAACCCATTTCTTCAACCAATGTGAGGCACTTAACATCCTCCCCTCTCCTCCTGTCCTCCCCTGTATGTCAGGGATTGGACATTTGAAGAGTAGACAACATAACATGGTAGCCTGTATTGAGTACCAAAGAATAGGGATGAGTCTAACTCTGATGCCTCACCAAGAAAATGGACCTTAAGGTTAATTCATTCTAGAACTTAGCTCGTGAGGTGATTAGACCTTATAAGACAACAATAACCTATTTCTTCAGCAAATATAGAAATACTTAACAACAAAAGTATTAAGGTCACTTGCGCTTGACAAGTACCCAAAGAAATAGCCGCAGTGCACACACCAAGCTGGTAGGACACCATCATTAGCTAGTGATTTCTTTTGCTCTTTTTTCCATCAATAATGGACAAAAGATAACTATTTTTTTTATAACGATGATGCCATGTCCAGTTTGATGTGCACTATTTTACCTGGTTTCTGCCAAGCGCATGTAATAGGTGACTGAGCCCACCAAGGATGTCCAGCTTGGTGTGCACTATTTTACCAGGTACCTGCCAAATCGAAGTACTAGGTAGCTATGCCCAGTGGATTCAAGCATTCAACTGGTTGCTGGTGGGTGGGATGACTGAGCAAGTTTCAGGCTTTATTGTACTTTCAATGTGATTGTTTTATTTTGTTGAATCCACCTTCTCGGCTCTCATGAACATGTTCTATAGTGGGTTTTATGGTGCTGAGCAAAAACTATTGATGGATATAGATTATTTCCCTTACTTAAATTAATCAGACAAAGTGGGGTAAAACCATTTTCCACAAAGGAGGTTCCATTCTTAATTTTATGTGCCATTAGATTATTTGATATATCAACACAAGTAGCTGATAGAATTGTACATTATAGCACCTAGTGATGGGTATTCATTCAGAGTAAGGGGAAGCCCATGTACGCAAGATGTACCATATAAAGATACTCCCTCTATTCCAATTTATGTGGCTTACTTTCCTTTTTAGTCAGTAACAACAATTTAACTATAAGCTGTCTATTTTGCCCTTACTGAAATGATATTCAACCACACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAATCTTCCTTTCTTTCTGAAACTCCGTGTCGAGTGAAACTACCTCACATCAAATGGGACGGACTGAGGGAGTATATTTTCCATGAAGGTCATCTGATCTATCCTAGAAACTATATGTTTTGACCTCTTCAAAAAGAGGCTGAAAAGAGCGACAATCTTTTTCATTTGTGAATGTGTATTATTGACACGTTCAAATGCTCTCTTGCGCCTCTCCTCTTATTTTTTGAGAATTAGTACTGTTGTGTTCTTCAGCATTAAGGAATGTTGGCCACCTCCAAAAAGTTACAAGGTAGTAAGGTTAAACTTTTAAGTTTTATTGAGCACCCAAGAAATTTGTCATCTCCTCTACTTCTCCTGTATTGCTTCCCAAGATCTCAACTGTTGTAGGATTATTTCTTTTTTATGTTTCCAGTCTCCCTCGTTACTTCTACTCCACCGCACTAGTTCCTTCTTAAGGAGTTTTAATTTGTTAGCCAGAGTGAAGGCTGGTTTGCCCGTGTTAGGGAAGGACAACCATCATGCAAGACCTTCTGTTTGAATCCTTCTACCTCTAGCCACCAATTTTCAAATTTGAAGTAGTTCTTCTTGTAATTCCAAATCTCCATATGTTAGAAGAATAGGATTATGATCTGATCCTATTCTAGGTAACAAAGACTGCTTGACCAGTAGGAGAGAGTCCTCCCAGTCAACTGAGTGTAGGAATCTGTCAATCTTGGAGGCACTGTTGTGATTCTTCCCCTCGTCCATGTTTTTGATCCTCCAAGAAAAGGAGGATCAACTAGTTCCAGGTCATAAATAGCCTATGTCAGTTTACCTTCTCTCTCACAAACCTACTGATATTGAAGTCACCACACACTCCCCAAGGGCCCTCCCAGTTGTTATGTAGCTAGCCTCCAGTTCACTCCAGAACTCTCTTCTGATCACCCTATTTCAACTTGCATATACAGCACTCAGAAGTCATGTAATATCCTGACAAACACCTGTGAACGTACATGATATCATTTGTCCAGTAGAGTCTACCATCTCCCCCACCCATTCCCTTTTATCCCACATTATCATAATCCCTCCTCTGCTACCCCTGGCCTCCAACTGAACTTCTCCCACCCATCTATCAGCCCACAACTCCCTCAAAATATTGCACCTCTCCTTTTATCTTTGTTTCTAAAAGAACATAGATGTTTGCCCCCCGCTGGTGAATTAATTGTTTTACCAGTCTCCTCTTTTCTGTCCCATTTATACCCCTTATATTCCATGATATAATTTAATCTTCATTGGTGATGGTCTTCTTCCCTCCTTAGTTCACTCCTGGATTCACCATCCTTATAATTTACCTCAAAAATTAAATTCCTGAACTCTTTTGAAATCAATTGGTTGTTGACTTTGGCACTTCTCTTCTTTGGTCTAGTTTTTCAAAGAGGGCCTCGGCTTCCTTTTTAAAACCATAAAAATGGCTCCAAATTCCTTGTTCAGTTTAATTATGTTCACCCAAGATCTTGCATCAGACTTCATCCTGTTAATGCACTCACTTAAATCAGCTGATTTTGTGTACCTTCCCCTGTTTTTTTCATTCTACCACTTCCAACAATCAGTTCAGTTTCTGATCTCACCATAATCGGAGTTGTGCTCGCATCTGTTTCGTTGTTTGAGTTGACCCTCTGTGTGTGGTCCTCGACCCCCTCTCTTGCAGTTGTCTCCCTTGCTTCATCTTATAGTCGAAACTTGTCACAGTTCTCAACTCCTCCACAAAGCCCATAAGGGTGTTTATGTTTTCCATGAAAAGGCTCAGCTGGAATCTTTTCCTTATATGAGTTGTTTGTCTTTAAATTGTTCTGCCCTTTCTCATTGAAAGAAAAGAAGGGCCACTTTCATTCGATAAAGGAGGCTCATTTTCATTTAAAATAAGAGATGGCCCAACAGATGGTCTGGAATAGAAGTGGTCCAGTGGCCCTGCTCTTTTACTGCAGCCAACCACTTGTCCATTGTTTTTATTCTCTGTGTAAAGCCCCCAGTCTTCTCCATTACCCAACAGATCTTGCATTGCTATCTCTTTCCCCTTCATCTGCAATTCCTTTCTCCACAGACATCTGACACAAGCTGTCATCCCATTTTTATGAGAACATTTGTCCCCTCTTGGTTGTTCAACAACCCTACCTTTTTTCAACTTTTCAAATCTTGCTGGTGCCTCTACCCATATCAGTAAAGTGAACCTCCATTCCCCATCCTCGACTACAACCGAAGTCAGAATATCTTCCGCGGTCCTTTTACTTTAATTCAAGCCCATCTCAAATGATTTTTGAGCTCTATCTCCTCTTCCGTCGTCAACCATCCCCTACACTTCTTCCCAATTTCCTTCATAACCCCTGCTGACCAAAGTTGGAGTGGCGGACCTAAAACCCTTATCCAATAGCAGTTAAAACTAGTATTGGTAGGGCGCACCCAGGTGTCCACCAATTAAGCTTGAGTTTGCTTCCCTGCTTTCTCCAAGAACCTTCCATAACATGCTCCACCCTTCACACTTTGGAACTCAAACAGGAATTGAATCCCGTTCATGTCAAAAACTTGGATGTTATGGATTCTGACCCAAGACTGGTGAGCCCATTTCCATACATCGTTTCTTGAGGGAATATCGTCGCACTTGGGAAACTGCCACTAAGCATTTTCTTAGGAGGGCATTCATTTAATGGTCATCTTGATTGCGTGGGGGTCATTTTTTATGCTTTCTTCTGATTTTGCTTACTTCTTCCCTTCAGCTCGGTGACAACTACTTTATGCATCCTAGCATAACAGAGTTCATGTCAAACTAAGCATAACATTTGACAGCTTTGCAGCCTCAATTTCCTTTGTCAAGTCGAACTAAGCTTTAACGCCACAATCTCTCGTCAACAATATCACATGTTGGGAACTTTCCTACAACTGTTTTTCGTGTTGCCTCTCTGCGCGTTTAGTTATTATCCTTCACTTTATGCTGAGTGATATGTAATGCACAGCTTTATACATGTTTTATAGTGCCTGTTTTTTTCAGGCAGTTGATGGTCAGCACCTTATCCTCCATCCACTGAACATGAAGTGCCTTCTGCATTACTACGGTGGCTACGGTGGTCTTCCTAACAGGTTTGAAGATAATTACATTCTTACAGTAAGTTATGCTATATTTTTCCAGTGAAAGATGACAAAGGGGTCTCTGTTTGTTGTTTTCAGAGAAACTGCAAAGCTGATGACCCATTGAACTCAATTTTGATACATGTAGCTTGTTCTAAACTTACCTGCATTTTAAGGCGACAACTATTAGATTGAAAAAATGTACTGTGTGTGGATTGAGTTATTCCTTTTGCTCCCAGTTGTTTGATAGAAGTTGCAATTCGGCCCCTATTCTTCTGTGGTACTATTTGTCCTTGATAAACTTTTCTGTTTCAGATGGTCCTTGGTGATATTAGCTACAAAAATGTAGCTTTATTTTGAGCACATGTGACCTCACTGGACAAAGTTTGGAGGTATAATTTGAAAAAAAAAACTTCTTATGATAGATAGCTGGCAAACCAACAAACAGATCAAATCCCAGTTCGACTCTCACTTTTCATCAGAAATAAGCTAGTCAGAAAGGGATTCTGAATGAGTTGCTGTGTGAAGGGGGAATTTTGATGATTTCGGTGAGCAAAGGAAGGGCAGGATGATGTATCTGAATCACAGGGAGAAAAATGGTGACAACAAGTTCCGGAGAGGGACAGAGATAATGAATAGTGACTGGGAAAGGAGTAGGATATATGCTAGACTTAGTGTGTAGAGGAGTTTATACAGGGCTCTAGGGTGGGCAGGGGGCCTCAGAGGGTGCTAGAGTATGAACTATAAGGGGCACTGAGAGGAGAACTTCTGCAGCAATGGAGGAATGTTCTTTTTTGAGATAAAAATATATATATATTTTTTTAAAAAATCATTTCAAAAAGCATGTGTAAACAGAGTGGCCGTCCTGGCAGTGTCAACAGTCTGTTGAATGGGGTCTTACCTTTTCTTTACATTCTTTCTTGGCTCGGTTATCCTTTCTCTTACTGGTTAATTATTTTGCTCCAACTTCATCCATAATTTTCACCATATCTTGGCTTGTCCAATTTCACCCTTCAGTCAAATTTTTAGGTTCATCTAAAGACCAAATCATTAACTGGTGAAGCCAGTGCAAGTTAGGTCAAACATTTTGGGTAAGATGAATGTTACCATATGTGCTTTTTGGAGGTAAGAACACTGAGGTCTATGTTAATGTTCCTCCAGTCCTTTAAAAGGATTTCCTTGTTATTTATATGCATTTTCTAAAGGCCCCTTTTTTTTCCAAAATACGAAGTGGTGTGTATTAGTAAACCTTATATAAGGTACATTAAAAGGAAAAAAAGGGCTTACACATGACATGAAAGGGTAGAGTTCCTCACCCGTTAGATTTCCAGATTGAATCTCATTTCAACCCCCTTTACCTTCTCTGGCCCACTCAACAGGAGGTTAGCGAGCTTCATTTTTGGTTCTTGAATTGGGTGGGATTCAAACTGTATTTGGGTAGGGGAGAGCATATGATTCGGACATATTCTAGAGCACCTGTATTGGTAAATAGACCAGAAGGGGTTGGTGATGGTGATTTCCTTTCGCTTTCAAAGGCCATAGGGAGGGGTTGGTTTGCTATGATGGAGTCATGGAGTCCAGTTAACCTTTTGGATTTTGTTAGCTCCCTTTTAGTCAATATGTTGTATTGAAGCTAACATTACTTTTACTACTTGCATCCAGTTAATGCTATTAATGATATACTTCATTTAAAAAAAAAAGACATAAAGGGCAAGGTTGGATAGATGGGTGTTTAGAAAAGGCACAAAGTTACCGCTTGCTGTGACAGTGTTCTATTTGTTTTTTTTTCTTTGGGGGGGTAGAGGGGGGGGGGGGGGTGAACTGTGCCATGTGCTGAGAGAGGGTATTGGTCTATGTGGGGAGAGACAGAGGCTAAATGGTGGTAAATACCATGCTTACCTGAAAGTGGACAATTATCTAGAGCAGCGAATGCTGTAGCGAAACTGATTGCAAAAGATAACATTATACCTGCCGATGTGAGTGTGTTTTGACCATATGCCTTTTTGTTATTCCACAACAACTTATTAGAGAAAATCTTGGCTACAGAATCAGTGGAAAGATTTTACAAATGGAGTCCGTGACGCAATCGGAGGCCATGAGAAGGCGTTACCGCTTCCTAAGTCATTTTTCTTTGACAACAACATTTCAGGTACTTGTTATGATGCTTATTTCTGGAAGTGTGCTGACTTCACTTCATTAATGGTTTGATCACTCTAATTATTTTCACTTGTAATTTCCAGCTTTGTGAAATTGATCTCAGCAAGATAATGCCCATGGATGCACTTTCTCCCTTTATGGAGGAAATCAGAAGTAGGGAAAAACAAAGGACGTGGCTAGCTAGGAAGGTTTGTAACCCACACTTTCATCAGAATTACAGCTGTTTTTTCTTTTCTTGTGCAAAATGGTTTAGCATCATGGGTTTATGATGTTTAGAAAAGCCCCCAGTGTGAACAGCAGAAGTTGCTTAAAGATTCAAGTGCAGGATGAAGGAACTTTCTAGAGAGAAAATGTGTAGGACTCTACTTACATTTTTGGCTTAATACACAAACAATTCGTTGAACTTACCACTAAATTTCATTTAGACACTCCAACTACGGCATGTTTCCAATTAATCACCTAAACAAGTAAGTTCAAATCTTTGATTTCTTTTTTCGCGTGCTCTCAAATGTACGTAAATAAGTTAAGCACTTATGTCACATTCTTTAATTATACGCATTAGCCTTAGTAAGCTTTAAAATCTCAGGCTTGTTCTAATTGTGGTTGATGTGTATTATTAACATCGATACATATTTACTGTGGTTAACTTAATTACCTAATAGATGTTTGAGAATATATGTAAAAGCTTCACTTTCTTTTGAGCTCGTCATTTGAATAGAATGTCCTATGTGAGTGGGCTAGTATTCATGTCCTCTCCTCTTAACCATAAACATCTTGATTTTGTCACCATGAGGTTTCTTCAGCTTTAGCAATCTCTCCAACTCTATTTTCAGGTTCAAGAACCTTGAGTTGGAATTCTGTTTTTTTTTTTTGGATGACTGTGGTGTCCGGGCCAGCTTCCGCGCACCTCGACTAATTCCATAGGATACCTGCCACCTTCCACCAGCAACAAGTACTAGGTAACTCTGTCCACCAAGGCTAGGGATGGGAAGAATCACCTAGTGCTTTTTATATCCGCTGAGTTAGTTGGAATTCTGTTTTCTCTTGCCTGTTCTAAAGCTGAAAGTCATCTAGAGCCCCGCTTCTACTTGTTTCTAGCTTGCCATATACTTCCCTGTTCCAGTTGTAGTCCTTTTTTCAAGTTCCTTAACTTCTATGTTCTAAGTACAAAGTCTGGACTGCCACCTGTTGTGTAATTCTGCCACCACCTCTTCACCATATCAGTGAACCCCATTTGTTGAAGCCTTATATTTTCAAACTTGATGTAAGATGGTGTTGAGTACCAGTCTTCACCTTGTAGCAGAAGAATTTTGTGGTCTGAATATTGAAATGCCGCCTGGCAGTGTCAACTGCTTGATAGCTTTGAAGCTTTCATTCCAGTATGAAAGTTAAGGAACCTATCAATTCTTGAGGCTTGTAGAGTGTCATCCCCTCTTGACAAAGTGTATTGTGCCCCTCGCAAGGCAAATCCATTCGCTGAAGGTCCAAAAGCGTTTCTGAGAAGCTCCTCATAGCTTGGTCCTTCTGGTGCACTTTAGCCTCTCATTCTCATGATATACGAAGTTGACAGTGCGCACAATTTAAAAAGGAATTTGGTTTGGATGATTCCTTTTATTGAGGAGATTCTCAAAGTTGATATTTTTCTTTTTCAGGAACGGCGTGAACAAGTTAAAGCTGAAGCCATTGGCATGTACTTAGAGCCTTTGCCTTTTAGCTTTTCAGAACCTTCTTTCACAGAACAACCTACTTTCACTAGCAATGACTTCGAAGGTACGTAAAATATTGCTATTTTATATAACAAATTTTATGCTCTCATCTTATGTGCTTTGGCATTTTAACCATCCTGGAGTATAATCCCCACCCCCACCCCCACCCCCACTTCAGAAATGAACCAGTGGAATCTAGAGGGGATAAATAAACCCAACGATACAAAAACATGAGGCAATTAACTTTTAAAGATTGGTAGGTAGTTGATATTCCATCAAAGCATCTTGATGGTGCTATCAACTTTCCTGCAACTCCAGCTTATCAAAACATCTCTGATATTCTGAGGCTTGACCCATTTGAGATCAAAAAGAGCTTAAAACATACTCCATAAGTCAGCTGCTATTTGGCATTGTAGAAATAGGTGATTGTGTGTTTCTGCTTCCTTCATGCTTCCGTCATTACTTGGATTGTTATAAGACAACTGTATTCCTTTAAGTACATTACTTTCATTAAGAGAGTTTAAAGTGCTTATCTTGTGTATGCTATTGATTTGTGTGATTATCTCATCTAAATGCGTAAACTGTTAGAGAGAGGAAACATTTCTATTCTTTTAACTGGTGAATTTTTTCTCACATCACACGGATTAGAATTATCATATAATCTCTCTCTTCTGGAATGAATATATTGAAATATTTTCGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTCATTCTTATTACTTTTTCAATATGAAAACGGAATGAACATCTGTTCTAGTATATTTCTTTACTCTGCTTATATCACAAATATTTCTGAAGAGATCCTCATATCAAAAGCTTCATTAAATAGGGAATGAAGTCCTTCTAAGTCTCTCCTGCCTTTACCTTTTTAGATCGACATCAGTCATTCTTCCATTTACTTCCCTTCAACTCTTCTCTCCCATCAAAAAGCTTTTTATTGTTCATTATCTATATTTATATTTTGACGGCCTCTGAATAAGGATAAGATATCACTAAGAGACGTGAACTTGATCAGTTATGAAAGAAACTACTATTATGTTGATAGTCATTGGTATTGCGCTAATTAACTATTATTGTGTTTCATGGGTGTAAAGCAAATCATTTTCTAAGTTATCACATTACAAACATTAAACGATATCAAATTACTAAGCAATGTCAATATGCCTACTAAAAAAAGTACAAGAGTGAAAAATATCAAATACTAAGAACAGAAAACACTTGCTAAGCAAATAAATCTGAACATCTTTAAATCATCATATTGAAAAAGTTAATTAACTAAATATCAATATCGTCATATAAACCTTTAACACCCGACATATACACAGAGAACCGAAGCTATAATCTCACCTTGATAATTTCAATCCTTAATTCTTATAGTCTCTATCTCCTCTGTTAAAGTTTTCTTCCATGTCAATTATGGTCTTAAAATCCTCTTTGAAGAATTCTGAAATTAAAAAAAAAAGTATTTTAAAATTGAAAAATAATCACAAACCTGGCCTAGACTCTTTTCTTCATTTTTGCTGCTTGAAATTTACTATTGTTACATCTTTTTTCAACTTCTCATTTGTTGCTTCCTTCTCCCATTCCTCCACCTCTTATATGTAAGCATCACTATTTTAAGTCCAATCATTGCTCCAAAGGCTGGATCATGTCTTCTAGTTACTCATTGACTATTCATTTCTAAAGCTTAATTGCGTAGTAATTACATTAACAGAGAATTAAGAGAATCAATTTTTATTTATGCCCAACATACTATAATTGTCAAAATATGCTAAGTTAGGCTTCTTTAGGGAAGCGAAAGGGCTGCATTAATGTTTCTTTGATAAAAAAATTTGTGGCCTCTAAGATAATGTGAGTTGACTGAAAAGGAACATGGAGTATGAAAGGTTGGGTAGTGATAATTCAATTTTTTCAGAGTTGGAGACTTTTTTTAAAAAATATAGGACAGAAATGGAAAAATAGGAAAAAGGCCAAAAAAGATAACTGTATTTCTTGGCCAAAGAGGGGTTCCGCATCACTCTTCTTTTGCCTACCTTTGTCATAATATATATATATATATATATATAGTCTCTTCAATACGTCCCCTCATGTGTGAGCCTGATTCAATTCATGGTAATCATGTGGAATTCACTTTGATAAATGGGTTGCAATGAGATTTGGAATCAGGATCTCTGCCTGTTCTGCTACCATTGTCATGCACTGATATCTGAGTGTGCGAACTCTTCACTTTTGGTGCTGCACTCTTGTCGACACGACGTGGGTGTGGGATCCATGCCGGATGTGGTCTATCAGTTTTGAGTACTTTGACCGAAACCGATATAGAAATTTGAGACAGATATAATGATGCTGAAATCAAAACAAAAGGTAGGGTGAAATCATAATTTGGGCAGATGTTTCTTTTGTCATTGGAAGGTATTTGTATGAAAAAGTCAGCAATCAGAATGTGCTTTAAAGATGTCTACAGGTCAAACACTAGTATGTGCAATGTACTCAAGAAGTTTAGCACGACCTGTTGTATCATTTGCAATAGCCATGTTACACCAATAAAACTGTAAGAAGATGCATTTGTTTTTAATAATAATTAAAGAACAAAGTTTGCTCTAAAGAAATTGTGCATTCCTTCATTCCGACTTGTCCATAATTTAGGCAGATTTTCATAAATCTACTTTTAGATATTTAAATTAGTTTTAGTTGAATCTCTGCACCCATATTCATACTTGGATCTATATGAAGGATCCCGACCTCTAGATCTGCCCCGTATCGTACACCTGCACCCCAGTCCGAGCAACAGTGGCGTAGCCACATGGTGGTCAGGGTGTCCAAGAAAAAAATATTGTATATACAAGTAAAATGATATACGAAATGATTAAATAACATATCTTGGACACCCTTAACATAACAAGTTGTAGCTCAGTGGTTTCGCCCTCTTGGAATGAGGACGTGCTCGTGTGTTCAAATCTCACTAGTTCTATTTTTTGAAAAGAGCTTTTGTTGTGCTATTTCTGGACACCCTTTGTGAAGTTCCTGGCTCCGCCACTGCCGAGCAGCTTAGTTTGGTACCATGTTAAGTTAAGTCTATGACCATCACATTTAAAAGTTCAAGCGGTTTGAGGGAGCACATTGTTATCTGCTTAATTATGTTTCAACATATACAATCACATTTCATGGTACAATCCTGTCACTCAAAACTGTTGTAGAAAATGGTTACTTTAGTAAGCTAAATTGAAGCTTGATAGTGGTGATCTTTCAGAAGTTTGACTTTTACTATTAGTACTTCTTCATGAATGCAAAAGCCTTGCTATTTGATCTGTATTTTTGAAGTTTTTACGATATTACGTAGGTACTAACCATCTTCCCATTAGTTGAAATGACTGTTGTTGTGTTTGTATTTGTGATAAGCTTTGGGAAGTACGAGTGTTACTGTAACATCATCAAGCTCCCCTGTGCCTGGAGGCAGGCAACTGTTCTCCAATGTTGCAAGGCTTGGTTTTGCTGCTGGATGTGATCCTCCAGCGCTGAAAATGGATGAGTCTGCACGTG</genome_strand>
        <mrna_strand>AGAAAGACACAAGTGGCATTACTGACAGAGAAGAGATCAGTTCCTACAGTTTCTACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGATGGTCAGCACCTTATCCTCCATCCACTGAACATGAAGTGCCTTCTGCATTACTACGGTGGCTACGGTGGTCTTCCTAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGTGGAAAGATTTTACAAATGGAGTCCGTGACGCAATCGGAGGCCATGAGAAGGCGTTACCGCTTCCTAAGTCATTTTTCTTTGACAACAACATTTCAG...........................................................................................CTTTGTGAAATTGATCTCAGCAAGATAATGCCCATGGATGCACTTTCTCCCTTTATGGAGGAAATCAGAAGTAGGGAAAAACAAAGGACGTGGCTAGCTAGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGCGTGAACAAGTTAAAGCTGAAGCCATTGGCATGTACTTAGAGCCTTTGCCTTTTAGCTTTTCAGAACCTTCTTTCACAGAACAACCTACTTTCACTAGCAATGACTTCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGGAAGTACGAGTGTTACTGTAACATCATCAAGCTCCCCTGTGCCTGGAGGCAGGCAACTGTTCTCCAATGTTGCAAGGCTTGGTTTTGCTGCTGGATGTGATCCTCCAGCGCTGAAAATGGATGAGTCTGCACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246838" ref_strand="+" ref_description="SGN-E246838 [cLEF-41-O23]">
      <seq>taaaccaatattgcaggagaagtcaactctcaataaggtagtgagggactctcatcttattcaagcttcagatgttgaatcaatagaagagcgtgtcggatcttcattgcccttatatggcaatgacaagagcctacagaaagacacaagtggcattactgacagagaagagatcagttcctacagtttctaccaggcagttgatggtcagcaccttatcctccatccactgaacatgaagtgccttctgcattactacggtggctacggtggtcttcctaacagaatcagtggaaagattttacaaatggagtccgtgacgcaatcggaggccatgagaaggcgttaccgcttcctaagtcatttttctttgacaacaacatttcagctttgtgaaattgatctcagcaagataatgcccatggatgcactttctccctttatggaggaaatcagaagtagggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="80561" stop="73094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80261" g_stop="80066" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80065" i_stop="75792" i_length="4274">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75791" g_stop="75703" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="285" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75702" i_stop="73669" i_length="2034">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.701" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73668" g_stop="73566" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="388" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73565" i_stop="73475" i_length="91">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73474" g_stop="73394" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="469" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E246838" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80261" e_stop="80066"/>
          <exon e_start="75791" e_stop="75703"/>
          <exon e_start="73668" e_stop="73566"/>
          <exon e_start="73474" e_stop="73394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCAATATTGCAGGAGAAGTCAACTCTCAATAAGGTAGTGAGGGACTCTCATCTTATTCAAGCTTCAGATGTTGAATCAATAGAAGAGCGTGTTGGATCTTCATTGTCCTTATATGGCAATGACAAGAGCCTACAGAAAGACACAAGTGGCATTACTGACAGAGAAGAGATCAGTTCCTACAGTTTCTACCAGGTGAATTCTCATGATGATGTTGTTTTTTCCTACCAAGTATCCGTGTATTACATTTAGATGCATGTGCACCATTTAGAAAATGGACATTGGGCCTCACTCACTCCAAATGCTAGCTTATGTGGTGAGATTACCCAGAGATATATAAGGAGACCACAAACCCATTTCTTCAACCAATGTGAGGCACTTAACATCCTCCCCTCTCCTCCTGTCCTCCCCTGTATGTCAGGGATTGGACATTTGAAGAGTAGACAACATAACATGGTAGCCTGTATTGAGTACCAAAGAATAGGGATGAGTCTAACTCTGATGCCTCACCAAGAAAATGGACCTTAAGGTTAATTCATTCTAGAACTTAGCTCGTGAGGTGATTAGACCTTATAAGACAACAATAACCTATTTCTTCAGCAAATATAGAAATACTTAACAACAAAAGTATTAAGGTCACTTGCGCTTGACAAGTACCCAAAGAAATAGCCGCAGTGCACACACCAAGCTGGTAGGACACCATCATTAGCTAGTGATTTCTTTTGCTCTTTTTTCCATCAATAATGGACAAAAGATAACTATTTTTTTTATAACGATGATGCCATGTCCAGTTTGATGTGCACTATTTTACCTGGTTTCTGCCAAGCGCATGTAATAGGTGACTGAGCCCACCAAGGATGTCCAGCTTGGTGTGCACTATTTTACCAGGTACCTGCCAAATCGAAGTACTAGGTAGCTATGCCCAGTGGATTCAAGCATTCAACTGGTTGCTGGTGGGTGGGATGACTGAGCAAGTTTCAGGCTTTATTGTACTTTCAATGTGATTGTTTTATTTTGTTGAATCCACCTTCTCGGCTCTCATGAACATGTTCTATAGTGGGTTTTATGGTGCTGAGCAAAAACTATTGATGGATATAGATTATTTCCCTTACTTAAATTAATCAGACAAAGTGGGGTAAAACCATTTTCCACAAAGGAGGTTCCATTCTTAATTTTATGTGCCATTAGATTATTTGATATATCAACACAAGTAGCTGATAGAATTGTACATTATAGCACCTAGTGATGGGTATTCATTCAGAGTAAGGGGAAGCCCATGTACGCAAGATGTACCATATAAAGATACTCCCTCTATTCCAATTTATGTGGCTTACTTTCCTTTTTAGTCAGTAACAACAATTTAACTATAAGCTGTCTATTTTGCCCTTACTGAAATGATATTCAACCACACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAATCTTCCTTTCTTTCTGAAACTCCGTGTCGAGTGAAACTACCTCACATCAAATGGGACGGACTGAGGGAGTATATTTTCCATGAAGGTCATCTGATCTATCCTAGAAACTATATGTTTTGACCTCTTCAAAAAGAGGCTGAAAAGAGCGACAATCTTTTTCATTTGTGAATGTGTATTATTGACACGTTCAAATGCTCTCTTGCGCCTCTCCTCTTATTTTTTGAGAATTAGTACTGTTGTGTTCTTCAGCATTAAGGAATGTTGGCCACCTCCAAAAAGTTACAAGGTAGTAAGGTTAAACTTTTAAGTTTTATTGAGCACCCAAGAAATTTGTCATCTCCTCTACTTCTCCTGTATTGCTTCCCAAGATCTCAACTGTTGTAGGATTATTTCTTTTTTATGTTTCCAGTCTCCCTCGTTACTTCTACTCCACCGCACTAGTTCCTTCTTAAGGAGTTTTAATTTGTTAGCCAGAGTGAAGGCTGGTTTGCCCGTGTTAGGGAAGGACAACCATCATGCAAGACCTTCTGTTTGAATCCTTCTACCTCTAGCCACCAATTTTCAAATTTGAAGTAGTTCTTCTTGTAATTCCAAATCTCCATATGTTAGAAGAATAGGATTATGATCTGATCCTATTCTAGGTAACAAAGACTGCTTGACCAGTAGGAGAGAGTCCTCCCAGTCAACTGAGTGTAGGAATCTGTCAATCTTGGAGGCACTGTTGTGATTCTTCCCCTCGTCCATGTTTTTGATCCTCCAAGAAAAGGAGGATCAACTAGTTCCAGGTCATAAATAGCCTATGTCAGTTTACCTTCTCTCTCACAAACCTACTGATATTGAAGTCACCACACACTCCCCAAGGGCCCTCCCAGTTGTTATGTAGCTAGCCTCCAGTTCACTCCAGAACTCTCTTCTGATCACCCTATTTCAACTTGCATATACAGCACTCAGAAGTCATGTAATATCCTGACAAACACCTGTGAACGTACATGATATCATTTGTCCAGTAGAGTCTACCATCTCCCCCACCCATTCCCTTTTATCCCACATTATCATAATCCCTCCTCTGCTACCCCTGGCCTCCAACTGAACTTCTCCCACCCATCTATCAGCCCACAACTCCCTCAAAATATTGCACCTCTCCTTTTATCTTTGTTTCTAAAAGAACATAGATGTTTGCCCCCCGCTGGTGAATTAATTGTTTTACCAGTCTCCTCTTTTCTGTCCCATTTATACCCCTTATATTCCATGATATAATTTAATCTTCATTGGTGATGGTCTTCTTCCCTCCTTAGTTCACTCCTGGATTCACCATCCTTATAATTTACCTCAAAAATTAAATTCCTGAACTCTTTTGAAATCAATTGGTTGTTGACTTTGGCACTTCTCTTCTTTGGTCTAGTTTTTCAAAGAGGGCCTCGGCTTCCTTTTTAAAACCATAAAAATGGCTCCAAATTCCTTGTTCAGTTTAATTATGTTCACCCAAGATCTTGCATCAGACTTCATCCTGTTAATGCACTCACTTAAATCAGCTGATTTTGTGTACCTTCCCCTGTTTTTTTCATTCTACCACTTCCAACAATCAGTTCAGTTTCTGATCTCACCATAATCGGAGTTGTGCTCGCATCTGTTTCGTTGTTTGAGTTGACCCTCTGTGTGTGGTCCTCGACCCCCTCTCTTGCAGTTGTCTCCCTTGCTTCATCTTATAGTCGAAACTTGTCACAGTTCTCAACTCCTCCACAAAGCCCATAAGGGTGTTTATGTTTTCCATGAAAAGGCTCAGCTGGAATCTTTTCCTTATATGAGTTGTTTGTCTTTAAATTGTTCTGCCCTTTCTCATTGAAAGAAAAGAAGGGCCACTTTCATTCGATAAAGGAGGCTCATTTTCATTTAAAATAAGAGATGGCCCAACAGATGGTCTGGAATAGAAGTGGTCCAGTGGCCCTGCTCTTTTACTGCAGCCAACCACTTGTCCATTGTTTTTATTCTCTGTGTAAAGCCCCCAGTCTTCTCCATTACCCAACAGATCTTGCATTGCTATCTCTTTCCCCTTCATCTGCAATTCCTTTCTCCACAGACATCTGACACAAGCTGTCATCCCATTTTTATGAGAACATTTGTCCCCTCTTGGTTGTTCAACAACCCTACCTTTTTTCAACTTTTCAAATCTTGCTGGTGCCTCTACCCATATCAGTAAAGTGAACCTCCATTCCCCATCCTCGACTACAACCGAAGTCAGAATATCTTCCGCGGTCCTTTTACTTTAATTCAAGCCCATCTCAAATGATTTTTGAGCTCTATCTCCTCTTCCGTCGTCAACCATCCCCTACACTTCTTCCCAATTTCCTTCATAACCCCTGCTGACCAAAGTTGGAGTGGCGGACCTAAAACCCTTATCCAATAGCAGTTAAAACTAGTATTGGTAGGGCGCACCCAGGTGTCCACCAATTAAGCTTGAGTTTGCTTCCCTGCTTTCTCCAAGAACCTTCCATAACATGCTCCACCCTTCACACTTTGGAACTCAAACAGGAATTGAATCCCGTTCATGTCAAAAACTTGGATGTTATGGATTCTGACCCAAGACTGGTGAGCCCATTTCCATACATCGTTTCTTGAGGGAATATCGTCGCACTTGGGAAACTGCCACTAAGCATTTTCTTAGGAGGGCATTCATTTAATGGTCATCTTGATTGCGTGGGGGTCATTTTTTATGCTTTCTTCTGATTTTGCTTACTTCTTCCCTTCAGCTCGGTGACAACTACTTTATGCATCCTAGCATAACAGAGTTCATGTCAAACTAAGCATAACATTTGACAGCTTTGCAGCCTCAATTTCCTTTGTCAAGTCGAACTAAGCTTTAACGCCACAATCTCTCGTCAACAATATCACATGTTGGGAACTTTCCTACAACTGTTTTTCGTGTTGCCTCTCTGCGCGTTTAGTTATTATCCTTCACTTTATGCTGAGTGATATGTAATGCACAGCTTTATACATGTTTTATAGTGCCTGTTTTTTTCAGGCAGTTGATGGTCAGCACCTTATCCTCCATCCACTGAACATGAAGTGCCTTCTGCATTACTACGGTGGCTACGGTGGTCTTCCTAACAGGTTTGAAGATAATTACATTCTTACAGTAAGTTATGCTATATTTTTCCAGTGAAAGATGACAAAGGGGTCTCTGTTTGTTGTTTTCAGAGAAACTGCAAAGCTGATGACCCATTGAACTCAATTTTGATACATGTAGCTTGTTCTAAACTTACCTGCATTTTAAGGCGACAACTATTAGATTGAAAAAATGTACTGTGTGTGGATTGAGTTATTCCTTTTGCTCCCAGTTGTTTGATAGAAGTTGCAATTCGGCCCCTATTCTTCTGTGGTACTATTTGTCCTTGATAAACTTTTCTGTTTCAGATGGTCCTTGGTGATATTAGCTACAAAAATGTAGCTTTATTTTGAGCACATGTGACCTCACTGGACAAAGTTTGGAGGTATAATTTGAAAAAAAAAACTTCTTATGATAGATAGCTGGCAAACCAACAAACAGATCAAATCCCAGTTCGACTCTCACTTTTCATCAGAAATAAGCTAGTCAGAAAGGGATTCTGAATGAGTTGCTGTGTGAAGGGGGAATTTTGATGATTTCGGTGAGCAAAGGAAGGGCAGGATGATGTATCTGAATCACAGGGAGAAAAATGGTGACAACAAGTTCCGGAGAGGGACAGAGATAATGAATAGTGACTGGGAAAGGAGTAGGATATATGCTAGACTTAGTGTGTAGAGGAGTTTATACAGGGCTCTAGGGTGGGCAGGGGGCCTCAGAGGGTGCTAGAGTATGAACTATAAGGGGCACTGAGAGGAGAACTTCTGCAGCAATGGAGGAATGTTCTTTTTTGAGATAAAAATATATATATATTTTTTTAAAAAATCATTTCAAAAAGCATGTGTAAACAGAGTGGCCGTCCTGGCAGTGTCAACAGTCTGTTGAATGGGGTCTTACCTTTTCTTTACATTCTTTCTTGGCTCGGTTATCCTTTCTCTTACTGGTTAATTATTTTGCTCCAACTTCATCCATAATTTTCACCATATCTTGGCTTGTCCAATTTCACCCTTCAGTCAAATTTTTAGGTTCATCTAAAGACCAAATCATTAACTGGTGAAGCCAGTGCAAGTTAGGTCAAACATTTTGGGTAAGATGAATGTTACCATATGTGCTTTTTGGAGGTAAGAACACTGAGGTCTATGTTAATGTTCCTCCAGTCCTTTAAAAGGATTTCCTTGTTATTTATATGCATTTTCTAAAGGCCCCTTTTTTTTCCAAAATACGAAGTGGTGTGTATTAGTAAACCTTATATAAGGTACATTAAAAGGAAAAAAAGGGCTTACACATGACATGAAAGGGTAGAGTTCCTCACCCGTTAGATTTCCAGATTGAATCTCATTTCAACCCCCTTTACCTTCTCTGGCCCACTCAACAGGAGGTTAGCGAGCTTCATTTTTGGTTCTTGAATTGGGTGGGATTCAAACTGTATTTGGGTAGGGGAGAGCATATGATTCGGACATATTCTAGAGCACCTGTATTGGTAAATAGACCAGAAGGGGTTGGTGATGGTGATTTCCTTTCGCTTTCAAAGGCCATAGGGAGGGGTTGGTTTGCTATGATGGAGTCATGGAGTCCAGTTAACCTTTTGGATTTTGTTAGCTCCCTTTTAGTCAATATGTTGTATTGAAGCTAACATTACTTTTACTACTTGCATCCAGTTAATGCTATTAATGATATACTTCATTTAAAAAAAAAAGACATAAAGGGCAAGGTTGGATAGATGGGTGTTTAGAAAAGGCACAAAGTTACCGCTTGCTGTGACAGTGTTCTATTTGTTTTTTTTTCTTTGGGGGGGTAGAGGGGGGGGGGGGGGTGAACTGTGCCATGTGCTGAGAGAGGGTATTGGTCTATGTGGGGAGAGACAGAGGCTAAATGGTGGTAAATACCATGCTTACCTGAAAGTGGACAATTATCTAGAGCAGCGAATGCTGTAGCGAAACTGATTGCAAAAGATAACATTATACCTGCCGATGTGAGTGTGTTTTGACCATATGCCTTTTTGTTATTCCACAACAACTTATTAGAGAAAATCTTGGCTACAGAATCAGTGGAAAGATTTTACAAATGGAGTCCGTGACGCAATCGGAGGCCATGAGAAGGCGTTACCGCTTCCTAAGTCATTTTTCTTTGACAACAACATTTCAGGTACTTGTTATGATGCTTATTTCTGGAAGTGTGCTGACTTCACTTCATTAATGGTTTGATCACTCTAATTATTTTCACTTGTAATTTCCAGCTTTGTGAAATTGATCTCAGCAAGATAATGCCCATGGATGCACTTTCTCCCTTTATGGAGGAAATCAGAAGTAGGGAAAAA</genome_strand>
        <mrna_strand>TAAACCAATATTGCAGGAGAAGTCAACTCTCAATAAGGTAGTGAGGGACTCTCATCTTATTCAAGCTTCAGATGTTGAATCAATAGAAGAGCGTGTCGGATCTTCATTGCCCTTATATGGCAATGACAAGAGCCTACAGAAAGACACAAGTGGCATTACTGACAGAGAAGAGATCAGTTCCTACAGTTTCTACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGATGGTCAGCACCTTATCCTCCATCCACTGAACATGAAGTGCCTTCTGCATTACTACGGTGGCTACGGTGGTCTTCCTAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGTGGAAAGATTTTACAAATGGAGTCCGTGACGCAATCGGAGGCCATGAGAAGGCGTTACCGCTTCCTAAGTCATTTTTCTTTGACAACAACATTTCAG...........................................................................................CTTTGTGAAATTGATCTCAGCAAGATAATGCCCATGGATGCACTTTCTCCCTTTATGGAGGAAATCAGAAGTAGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334074" ref_strand="+" ref_description="SGN-E334074 [cTOD-24-L15]">
      <seq>agggtgctagagtatgaactataaggggcactgagaggagaacttctgcagcaatggaggaatgttcttttttgagataaaaatatatatatatttttttaaaaaatcatttcaaaaagcatgtgtaaacagagtggccgtcctggcagtgtcaacagtctgttgaatggggtcttaccttttctttacattctttcttggctcggttatcctttctcttactggttaattattttgctccaacttcatccataattttcaccatatcttggcttgtccaatttcacccttcagtcaaatttttaggttcatctaaagaccaaatcattaactggtgaagccagtgcaagttaggtcaaacattttgggtaagatgaatgttaccatatgtgctttttggaggtaagaacactgaggtctatgttaatgttcctccagtcctttaaaaggatttccttgttatttatatgcattttctaaagggcccttttttttccaaaatacgaagtggtgtgtattagtaaaccttatataaagtacattaaaaggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="75291" stop="74137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74991" g_stop="74437" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E334074" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74991" e_stop="74437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTGCTAGAGTATGAACTATAAGGGGCACTGAGAGGAGAACTTCTGCAGCAATGGAGGAATGTTCTTTTTTGAGATAAAAATATATATATATTTTTTTAAAAAATCATTTCAAAAAGCATGTGTAAACAGAGTGGCCGTCCTGGCAGTGTCAACAGTCTGTTGAATGGGGTCTTACCTTTTCTTTACATTCTTTCTTGGCTCGGTTATCCTTTCTCTTACTGGTTAATTATTTTGCTCCAACTTCATCCATAATTTTCACCATATCTTGGCTTGTCCAATTTCACCCTTCAGTCAAATTTTTAGGTTCATCTAAAGACCAAATCATTAACTGGTGAAGCCAGTGCAAGTTAGGTCAAACATTTTGGGTAAGATGAATGTTACCATATGTGCTTTTTGGAGGTAAGAACACTGAGGTCTATGTTAATGTTCCTCCAGTCCTTTAAAAGGATTTCCTTGTTATTTATATGCATTTTCTAAAGGCCCCTTTTTTTTCCAAAATACGAAGTGGTGTGTATTAGTAAACCTTATATAAGGTACATTAAAAGGAAAAAA</genome_strand>
        <mrna_strand>AGGGTGCTAGAGTATGAACTATAAGGGGCACTGAGAGGAGAACTTCTGCAGCAATGGAGGAATGTTCTTTTTTGAGATAAAAATATATATATATTTTTTTAAAAAATCATTTCAAAAAGCATGTGTAAACAGAGTGGCCGTCCTGGCAGTGTCAACAGTCTGTTGAATGGGGTCTTACCTTTTCTTTACATTCTTTCTTGGCTCGGTTATCCTTTCTCTTACTGGTTAATTATTTTGCTCCAACTTCATCCATAATTTTCACCATATCTTGGCTTGTCCAATTTCACCCTTCAGTCAAATTTTTAGGTTCATCTAAAGACCAAATCATTAACTGGTGAAGCCAGTGCAAGTTAGGTCAAACATTTTGGGTAAGATGAATGTTACCATATGTGCTTTTTGGAGGTAAGAACACTGAGGTCTATGTTAATGTTCCTCCAGTCCTTTAAAAGGATTTCCTTGTTATTTATATGCATTTTCTAAAGGGCCCTTTTTTTTCCAAAATACGAAGTGGTGTGTATTAGTAAACCTTATATAAAGTACATTAAAAGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200101" ref_strand="+" ref_description="SGN-E200101 [cLEC-8-M20]">
      <seq>aggattcatttactttatctttgaaaaataatgatggcattgttggtagagaggaggttcaaaagttattctctaaattcatatttacgtccgatgtcgacctttctgttcgagaggcaatgtctgatcttgatagttggttagctagagctgattcaggcttagttgatgacttggagaaacttccctttgtctgtgctgcaagggaactattggagcagaggaagacgtactggaataggcaacatattgctgttcaaaatagcaaatctgacgaagataatcgtttggagaagtgctcttatagttctcagcgactagaaagtgttcaggtccattctgctggacaatctactcatgtaatgccatacagtaatccagctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="80946" stop="79960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80646" g_stop="80260" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E200101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80646" e_stop="80260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTCATTTACTTTATCTTTGAAAAATAATGATGGCATTGTTGGTAGAGAGGAGGTTCAAAAGTTATTCTCTAAATTCATATTTACGTCCGATGTCGACCTTTCTGTTCGAGAGGCAATGTCTGATCTTGATAGTTGGTTAGCTAGAGCTGATTCAGGCTTAGTTGATGACTTGGAGAAACTTCCCTTTGTCTGTGCTGCAAGGGAACTATTGGAGCAGAGGAAGACGTACTGGAATAGGCAACATATTGCTGTTCAAAATAGCAAATCTGACGAAGATAATCGTTTGGAGAAGTGCTCTTATAGTTCTCAGCGACTAGAAAGTGTTCAGGTCCATTCTGCTGGACAATCTACTCATGTAATGCCATACAGTAATCCAGCTGATA</genome_strand>
        <mrna_strand>AGGATTCATTTACTTTATCTTTGAAAAATAATGATGGCATTGTTGGTAGAGAGGAGGTTCAAAAGTTATTCTCTAAATTCATATTTACGTCCGATGTCGACCTTTCTGTTCGAGAGGCAATGTCTGATCTTGATAGTTGGTTAGCTAGAGCTGATTCAGGCTTAGTTGATGACTTGGAGAAACTTCCCTTTGTCTGTGCTGCAAGGGAACTATTGGAGCAGAGGAAGACGTACTGGAATAGGCAACATATTGCTGTTCAAAATAGCAAATCTGACGAAGATAATCGTTTGGAGAAGTGCTCTTATAGTTCTCAGCGACTAGAAAGTGTTCAGGTCCATTCTGCTGGACAATCTACTCATGTAATGCCATACAGTAATCCAGCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232925" ref_strand="+" ref_description="SGN-E232925 [cLED-8-L24]">
      <seq>gagaacgttaaacaacatcgtgtcagtgatgtaattgaatttttactcttaacccgtcacaaggattcatttactttatctttgaaaaataatgatggcattgttggtagagaggaggttcaaaagttattctctaaattcatatttacgtccgatgtcgacctttctgttcgagaggcaatgtctgatcttgatagttggttagctagagctgattcaggcttagttgatgacttggagaaacttccctttgtctgtgctgcaagggaactattggagcagaggaagacgtactggaataggcaacatattgctgttcaaaatagcaaatctgacgaagataatcgtttggagaagtgctcttatagttctcagcgactagaaagtgttcatgtcctttctgctggacaatctactcatgtaatgccatacagtaatccagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="81007" stop="79962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80707" g_stop="80262" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E232925" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80707" e_stop="80262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACGTTAAACAACATCGTGTCAGTGATGTAATTGAATTTTTACTCTTAACCCGTCACAAGGATTCATTTACTTTATCTTTGAAAAATAATGATGGCATTGTTGGTAGAGAGGAGGTTCAAAAGTTATTCTCTAAATTCATATTTACGTCCGATGTCGACCTTTCTGTTCGAGAGGCAATGTCTGATCTTGATAGTTGGTTAGCTAGAGCTGATTCAGGCTTAGTTGATGACTTGGAGAAACTTCCCTTTGTCTGTGCTGCAAGGGAACTATTGGAGCAGAGGAAGACGTACTGGAATAGGCAACATATTGCTGTTCAAAATAGCAAATCTGACGAAGATAATCGTTTGGAGAAGTGCTCTTATAGTTCTCAGCGACTAGAAAGTGTTCAGGTCCATTCTGCTGGACAATCTACTCATGTAATGCCATACAGTAATCCAGCTGA</genome_strand>
        <mrna_strand>GAGAACGTTAAACAACATCGTGTCAGTGATGTAATTGAATTTTTACTCTTAACCCGTCACAAGGATTCATTTACTTTATCTTTGAAAAATAATGATGGCATTGTTGGTAGAGAGGAGGTTCAAAAGTTATTCTCTAAATTCATATTTACGTCCGATGTCGACCTTTCTGTTCGAGAGGCAATGTCTGATCTTGATAGTTGGTTAGCTAGAGCTGATTCAGGCTTAGTTGATGACTTGGAGAAACTTCCCTTTGTCTGTGCTGCAAGGGAACTATTGGAGCAGAGGAAGACGTACTGGAATAGGCAACATATTGCTGTTCAAAATAGCAAATCTGACGAAGATAATCGTTTGGAGAAGTGCTCTTATAGTTCTCAGCGACTAGAAAGTGTTCATGTCCTTTCTGCTGGACAATCTACTCATGTAATGCCATACAGTAATCCAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313040" ref_strand="+" ref_description="SGN-E313040 [cTOA-14-K5]">
      <seq>ccaaatccaaacaacagcagcagcagcatcccgacaacttctcaggaaacatggctaccgctgcatctacttctggtggatcctccaaaaaggtgaacaactccggtagcagtcgagaaagttcacgacatcataacagtgatataatctcactgcacggacaaggaaaaccagctaggaccaatgatccttccagcggaagagaccagtttggctttaacagtccccaaggagttgttacccgctcagcttcaagaagaacccagatgaggaagacgtactggaataggcaacatattgctgttcaaaatagcaaatctgacgaagataatcgtttggagaagtgctcttatagttctcagcgactagaaagtgttcaggtccattctgctggacaatctactcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="81885" stop="79986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81585" g_stop="81541" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81540" i_stop="81440" i_length="101">
            <donor d_prob="0.590" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81439" g_stop="81393" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="92" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81392" i_stop="81314" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81313" g_stop="81137" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="269" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81136" i_stop="80426" i_length="711">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80425" g_stop="80286" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="409" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E313040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81585" e_stop="81541"/>
          <exon e_start="81439" e_stop="81393"/>
          <exon e_start="81313" e_stop="81137"/>
          <exon e_start="80425" e_stop="80286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTCTCAGGTTTCCGTCCCGTATACCCTAATTCAACGATGTCATTTTGTCTCGCCTTATTTATTTTAGTTCCTTTTCTTTCCGTCTCATGCTTTTTTTTTCTTTGTCAGGAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAGGTAAATTTTGTGTTGTAACTTCTCTTCTCTTAATAAACCAATTTACTAATGCAGCTCTGCTCTTCACAATATATTGCAGGTGAACAACTCCGGTAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTTCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTACAGTGGGAGGATATTGTTTGTGTGAGATATTCCACTCCATTTCATGTGCAATGCCCCATATGCTTAGAGGATCCTCTTTGTCCTCAGATAACTTCGTGTGGTCATATCTTCTGTTTTCCCTGTGTTATGCAATATTTTATGATCTCCGAAGAAGATGACCATAAAAATAATTTCAAGAAGAAATGCCCTTTGTGTTTTATGATGATATCTTCACAGGATTTGTACACCATTCAAATTGAGAACGTTAAACAACATCGTGTCAGTGATGTAATTGAATTTTTACTCTTAACCCGTCACAAGGATTCATTTACTTTATCTTTGAAAAATAATGATGGCATTGTTGGTAGAGAGGAGGTTCAAAAGTTATTCTCTAAATTCATATTTACGTCCGATGTCGACCTTTCTGTTCGAGAGGCAATGTCTGATCTTGATAGTTGGTTAGCTAGAGCTGATTCAGGCTTAGTTGATGACTTGGAGAAACTTCCCTTTGTCTGTGCTGCAAGGGAACTATTGGAGCAGAGGAAGACGTACTGGAATAGGCAACATATTGCTGTTCAAAATAGCAAATCTGACGAAGATAATCGTTTGGAGAAGTGCTCTTATAGTTCTCAGCGACTAGAAAGTGTTCAGGTCCATTCTGCTGGACAATCTACTCATGT</genome_strand>
        <mrna_strand>CCAAATCCAAACAACAGCAGCAGCAGCATCCCGACAACTTCTCAG.....................................................................................................GAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAG...............................................................................GTGAACAACTCCGGTAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTTCAAGAAGAACCCAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGACGTACTGGAATAGGCAACATATTGCTGTTCAAAATAGCAAATCTGACGAAGATAATCGTTTGGAGAAGTGCTCTTATAGTTCTCAGCGACTAGAAAGTGTTCAGGTCCATTCTGCTGGACAATCTACTCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299883" ref_strand="+" ref_description="SGN-E299883 [cLEW-1-O20]">
      <seq>gaagaacccagatggttagtggaaaccacttgctcaattttcagtatgatcccatttctcgtccacaatctaggttgcctcctcctaggagatacgtcaagaggaagccttacaacaaagacttgtttcttcaagcaaattacaagtttgttctgttggattcaggcaattacacgcctgactcgatggatccagacaaaatgttacagtgggaggatattgtttgtgtgagatattccactccatttcatgtgcaatgccccatatgcttagaggatcctctttgtcctcagataacttcgtgtggtcatatcttctgttttccctgtgttatgcaatattttatgatctccgaagaagatgaccataaaaataatttcaagaagaaatgccctttgtgttttatgatgatatcttcacaggatttgtacaccattcaaattgagaacgttaaacaacatcgtgtcagtgatgtaattgaatttttactcttaacccgtcacaaggattcatttactttatctttgaaaaataatgatggcattgttggtagagaggaggttcaaaagttattctctaaattcatatttacgtccgatgtcgacctttctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="81450" stop="80237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81150" g_stop="80537" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E299883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81150" e_stop="80537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTACAGTGGGAGGATATTGTTTGTGTGAGATATTCCACTCCATTTCATGTGCAATGCCCCATATGCTTAGAGGATCCTCTTTGTCCTCAGATAACTTCGTGTGGTCATATCTTCTGTTTTCCCTGTGTTATGCAATATTTTATGATCTCCGAAGAAGATGACCATAAAAATAATTTCAAGAAGAAATGCCCTTTGTGTTTTATGATGATATCTTCACAGGATTTGTACACCATTCAAATTGAGAACGTTAAACAACATCGTGTCAGTGATGTAATTGAATTTTTACTCTTAACCCGTCACAAGGATTCATTTACTTTATCTTTGAAAAATAATGATGGCATTGTTGGTAGAGAGGAGGTTCAAAAGTTATTCTCTAAATTCATATTTACGTCCGATGTCGACCTTTCTGTT</genome_strand>
        <mrna_strand>GAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTACAGTGGGAGGATATTGTTTGTGTGAGATATTCCACTCCATTTCATGTGCAATGCCCCATATGCTTAGAGGATCCTCTTTGTCCTCAGATAACTTCGTGTGGTCATATCTTCTGTTTTCCCTGTGTTATGCAATATTTTATGATCTCCGAAGAAGATGACCATAAAAATAATTTCAAGAAGAAATGCCCTTTGTGTTTTATGATGATATCTTCACAGGATTTGTACACCATTCAAATTGAGAACGTTAAACAACATCGTGTCAGTGATGTAATTGAATTTTTACTCTTAACCCGTCACAAGGATTCATTTACTTTATCTTTGAAAAATAATGATGGCATTGTTGGTAGAGAGGAGGTTCAAAAGTTATTCTCTAAATTCATATTTACGTCCGATGTCGACCTTTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294400" ref_strand="+" ref_description="SGN-E294400 [cLET-14-C6]">
      <seq>ttcaagaagaacccagatggttagtggaaaccacttgctcaattttcagtatgatcccatttctcgtccacaatctaggttgcctcctcctaggagatacgtcaagaggaagccttacaacaaagacttgtttcttcaagcaaattacaagtttgttctgttggattcaggcaattacacgcctgactcgatggatccagacaaaatgttacagtgggaggatattgtttgtgtgagatattccactccatttcatgtgcaatgccccatatgcttagaggatcctctttgtcctcagataacttcgtgtggtcatatcttctgttttccctgggttatgcaatattttatgatctccgaagaagatgaccataaaaataatttcaagaagaaatgccctttgtgttttatgatgatatcttcacaggatttgtacaccattcaaattgagaacgttaaacaacatcgtgtcagtgatgtaattgaatttttactcttaacccgtcacaaggattcatttactttatttttgaaaaataatgatggcattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="81455" stop="80303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81155" g_stop="80603" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E294400" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81155" e_stop="80603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTACAGTGGGAGGATATTGTTTGTGTGAGATATTCCACTCCATTTCATGTGCAATGCCCCATATGCTTAGAGGATCCTCTTTGTCCTCAGATAACTTCGTGTGGTCATATCTTCTGTTTTCCCTGTGTTATGCAATATTTTATGATCTCCGAAGAAGATGACCATAAAAATAATTTCAAGAAGAAATGCCCTTTGTGTTTTATGATGATATCTTCACAGGATTTGTACACCATTCAAATTGAGAACGTTAAACAACATCGTGTCAGTGATGTAATTGAATTTTTACTCTTAACCCGTCACAAGGATTCATTTACTTTATCTTTGAAAAATAATGATGGCATTGTT</genome_strand>
        <mrna_strand>TTCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTACAGTGGGAGGATATTGTTTGTGTGAGATATTCCACTCCATTTCATGTGCAATGCCCCATATGCTTAGAGGATCCTCTTTGTCCTCAGATAACTTCGTGTGGTCATATCTTCTGTTTTCCCTGGGTTATGCAATATTTTATGATCTCCGAAGAAGATGACCATAAAAATAATTTCAAGAAGAAATGCCCTTTGTGTTTTATGATGATATCTTCACAGGATTTGTACACCATTCAAATTGAGAACGTTAAACAACATCGTGTCAGTGATGTAATTGAATTTTTACTCTTAACCCGTCACAAGGATTCATTTACTTTATTTTTGAAAAATAATGATGGCATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326456" ref_strand="+" ref_description="SGN-E326456 [cTOC-14-H6]">
      <seq>gacaatcatacaacctcctcctcctcttcttcttcttctccaaaccctaactctaatcatggatccaaatccaaacaacagcagcagcagcaacccgacaacttctcaggaaacatggctaccgctgcatctacttctggtggatcctccaaaaaggtgaacaactccggtagcagtcgagaaagttcacgacatcataacagtgatataatctcactgcacggacaaggaaaaccagctaggaccaatgatccttccagcggaagagaccagtttggctttaacagtccccaaggagttgttacccgctcagcttcaagaagaacccagatggttagtggaaaccacttgctcaattttcagtatgatcccatttctcgtccacaatctaggttgcctcctcctaggagatacgtcaagaggaagccttacaacaaagacttgtttcttcaagcaaattacaagtttgttctgttggattcaggcaattacacgcctgactcgatggatccagacaaaatgttacagtgggaggatattgtntgtgtgagatattccactccatttcatgtgcaatgccccatatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="81949" stop="80580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81649" g_stop="81541" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81540" i_stop="81440" i_length="101">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81439" g_stop="81393" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="156" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81392" i_stop="81314" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81313" g_stop="80880" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="590" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E326456" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81649" e_stop="81541"/>
          <exon e_start="81439" e_stop="81393"/>
          <exon e_start="81313" e_stop="80880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATCATACAACCTCCTCCTCCTCTTCTTCTTCTTCTCCAAACCCTAACTCTAATCATGGATCCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTCTCAGGTTTCCGTCCCGTATACCCTAATTCAACGATGTCATTTTGTCTCGCCTTATTTATTTTAGTTCCTTTTCTTTCCGTCTCATGCTTTTTTTTTCTTTGTCAGGAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAGGTAAATTTTGTGTTGTAACTTCTCTTCTCTTAATAAACCAATTTACTAATGCAGCTCTGCTCTTCACAATATATTGCAGGTGAACAACTCCGGTAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTTCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTACAGTGGGAGGATATTGTTTGTGTGAGATATTCCACTCCATTTCATGTGCAATGCCCCATATGCTT</genome_strand>
        <mrna_strand>GACAATCATACAACCTCCTCCTCCTCTTCTTCTTCTTCTCCAAACCCTAACTCTAATCATGGATCCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTCTCAG.....................................................................................................GAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAG...............................................................................GTGAACAACTCCGGTAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTTCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTACAGTGGGAGGATATTGTNTGTGTGAGATATTCCACTCCATTTCATGTGCAATGCCCCATATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367455" ref_strand="+" ref_description="SGN-E367455 [cLPT-7-N18]">
      <seq>atggatccaaatccaaacaacagcagcagcagcaacccgacaacttttcaggaaacatggctaccgctgcatctacttctggaggatcctccaaaaaggtgaacaactccggcagcagtcgagaaagttcacgacatcataacagtgatataatctgactgcacggacaaggaaaaccagctaggaccaatgatccttccagcggaagagaccagtttggctttaacagtccccaaggagttgttacccgctcagctccaagaagaacccagatggttagtggaaaccacttgctcaattttcagtatgatcccatttctcgtccacaatctaggttgcctcctcctaggagatacgtcaagaggaagccttacaacaaagactcgtttcttcaagcaaattacaagtttgttctgttggattcaggccattacacgcctgactcgatggatccagacaaaatgttacagtgggaggatattgcttgtgtgagatattgcactccatttcatgtgcaaagccccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="81891" stop="80584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81591" g_stop="81541" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81540" i_stop="81440" i_length="101">
            <donor d_prob="0.590" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81439" g_stop="81393" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="98" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81392" i_stop="81314" i_length="79">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81313" g_stop="80884" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="528" r_length="430" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E367455" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81591" e_stop="81541"/>
          <exon e_start="81439" e_stop="81393"/>
          <exon e_start="81313" e_stop="80884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATCCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTCTCAGGTTTCCGTCCCGTATACCCTAATTCAACGATGTCATTTTGTCTCGCCTTATTTATTTTAGTTCCTTTTCTTTCCGTCTCATGCTTTTTTTTTCTTTGTCAGGAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAGGTAAATTTTGTGTTGTAACTTCTCTTCTCTTAATAAACCAATTTACTAATGCAGCTCTGCTCTTCACAATATATTGCAGGTGAACAACTCCGGTAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTTCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTACAGTGGGAGGATATTGTTTGTGTGAGATATTCCACTCCATTTCATGTGCAATGCCCCATAT</genome_strand>
        <mrna_strand>ATGGATCCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTTTCAG.....................................................................................................GAAACATGGCTACCGCTGCATCTACTTCTGGAGGATCCTCCAAAAAG...............................................................................GTGAACAACTCCGGCAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTGACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTCCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTCGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCCATTACACGCCTGACTCGATGGATCCAGACAAAATGTTACAGTGGGAGGATATTGCTTGTGTGAGATATTGCACTCCATTTCATGTGCAAAGCCCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358499" ref_strand="+" ref_description="SGN-E358499 [cLHT-35-N5]">
      <seq>ctttgtctaatctaatctcccaggaggaatttcatgtccatcttgccctcccatagcgacaatcatacaacttcctcctcttcttcttcttctccaaaccctaactctaatcatggatccaaatccaaacaacagcagcagcagcaacccgacaacttctcaggaaacatggctaccgctgcatctacttctggtggatcctccaaaaaggtgaacaactccggcagcagtcgagaaagttcacgacatcataacaatgatataatctcactgcacggacaaggaaaaccagctaggaccaatgatccttccagcggaagagaccagtttggctttaacagtccccaaggagttgttacccgctcagctccaagaagaacccagatggttagtggaaaccacttgctcaattttcagtatgatcccatttctcgtccacaatctaggttgcctcctcctaggagatacgtcaagaggaagccttacaacaaagacttgtttcttcaagcaaattacaagtttgttctgttggattcaggcaattacacgcctgactcgatggatccagacaaaatgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="82006" stop="80644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81706" g_stop="81541" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81540" i_stop="81440" i_length="101">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81439" g_stop="81393" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="210" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81392" i_stop="81314" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81313" g_stop="80944" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="580" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E358499" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81706" e_stop="81541"/>
          <exon e_start="81439" e_stop="81393"/>
          <exon e_start="81313" e_stop="80944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTCTAATCTAATCTCCCAGGAGGAATTTCATGTCCATCTTGCCCTCCCATAGCGACAATCATACAACCTCCTCCTCCTCTTCTTCTTCTTCTCCAAACCCTAACTCTAATCATGGATCCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTCTCAGGTTTCCGTCCCGTATACCCTAATTCAACGATGTCATTTTGTCTCGCCTTATTTATTTTAGTTCCTTTTCTTTCCGTCTCATGCTTTTTTTTTCTTTGTCAGGAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAGGTAAATTTTGTGTTGTAACTTCTCTTCTCTTAATAAACCAATTTACTAATGCAGCTCTGCTCTTCACAATATATTGCAGGTGAACAACTCCGGTAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTTCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTAC</genome_strand>
        <mrna_strand>CTTTGTCTAATCTAATCTCCCAGGAGGAATTTCATGTCCATCTTGCCCTCCCATAGCGACAATCATACAA-CT--TCCTCCTCTTCTTCTTCTTCTCCAAACCCTAACTCTAATCATGGATCCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTCTCAG.....................................................................................................GAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAG...............................................................................GTGAACAACTCCGGCAGCAGTCGAGAAAGTTCACGACATCATAACAATGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTCCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310481" ref_strand="+" ref_description="SGN-E310481 [cTOA-9-C7]">
      <seq>aaccaaccccctttgtctaatctaatctcccaggaggaatttcatgtccatcttgccctcccatagcgacaatcatacaacctcctcctcctcttcttcttcttctccaaaccctaactctaatcatggatccaaatccaaacaacagcagcagcagcaacccgacaacttctcaggaaacatggctaccgctgcatctacttctggtggatcctccaaaaaggtgaacaactccggtagcagtcgagaaagttcacgacatcataacagtgatataatctcactgcacggacaaggaaaaccagctaggaccaatgatccttccagcggaagagaccagtttggctttaacagtccccaaggagttgttacccgctcagcttcaagaagaacccagatggttagtggaaaccacttgctcaattttcagtatgatcccatttctcgtccacaatctaggttgcctcctcctaggagatacgtcaagaggaagccttacaacaaagacttgtttcttcaagcaaattacaagtttgttctgttggattcaggcaattacacgcctgactcgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0098J01-eQc8V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0098J01.2" temp_strand="-" temp_description="C02HBa0098J01.2  AC215600.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0098J01 sequenced_by:kribb upload_account_name:korea">
        <position start="82016" stop="80660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81716" g_stop="81541" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81540" i_stop="81440" i_length="101">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81439" g_stop="81393" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="223" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81392" i_stop="81314" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81313" g_stop="80960" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="577" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0098J01.2" gen_strand="-" ref_id="SGN-E310481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0098J01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81716" e_stop="81541"/>
          <exon e_start="81439" e_stop="81393"/>
          <exon e_start="81313" e_stop="80960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAACCCCCTTTGTCTAATCTAATCTCCCAGGAGGAATTTCATGTCCATCTTGCCCTCCCATAGCGACAATCATACAACCTCCTCCTCCTCTTCTTCTTCTTCTCCAAACCCTAACTCTAATCATGGATCCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTCTCAGGTTTCCGTCCCGTATACCCTAATTCAACGATGTCATTTTGTCTCGCCTTATTTATTTTAGTTCCTTTTCTTTCCGTCTCATGCTTTTTTTTTCTTTGTCAGGAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAGGTAAATTTTGTGTTGTAACTTCTCTTCTCTTAATAAACCAATTTACTAATGCAGCTCTGCTCTTCACAATATATTGCAGGTGAACAACTCCGGTAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTTCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGAT</genome_strand>
        <mrna_strand>AACCAACCCCCTTTGTCTAATCTAATCTCCCAGGAGGAATTTCATGTCCATCTTGCCCTCCCATAGCGACAATCATACAACCTCCTCCTCCTCTTCTTCTTCTTCTCCAAACCCTAACTCTAATCATGGATCCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTCTCAG.....................................................................................................GAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAG...............................................................................GTGAACAACTCCGGTAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTTCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>159</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2182" PGL_stop="1685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2182" e_stop="2121"/>
            <exon e_start="2027" e_stop="1685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="2182" e_stop="2121" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2120" i_stop="2028" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2027" e_stop="1685" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2182" stop="2121"/>
              <exon start="2027" stop="1685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1963" stop="1685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTCTTCCGAAAGTTCCTGGCCGTTTTTACTTCTACTTTGGCAAGCCAATTGAAACAGCAG : GGAGGAAGGAGGAACTTAAAAGCAAGGAGAAAGCACATGAATTATACTTGGAAGTGAAGTCTGAGGTTGAGAGATGTATTGATTACCTGAAGGAGAAAAGAGAGAGTGATTCGTATAGGAATATAATGGCCCGCCTGCCTTACCAGGCTAGCCATGGCTTTGATTCTGAAGTTCCCACCTTTGATCTATAGTATTATGTAAAAGAAGAACAAAAGAAAATACTTAATACTGTTGCAGCGATCGAGTTGATCAATGTGTAGAGCGCAGTATTAGTTAAAAGGTACCAGCGTAGGCCAAACCTATAGTATAATGTAATATTAAGTTTAATGATAATGCCCTAAAA</gDNA_template>
            <first_frame> H  S  S  E  S  S  W  P  F  L  L  L  L  W  Q  A  N  *  N  S  R :   E  E  G  G  T  *  K  Q  G  E  S  T  *  I  I  L  G  S  E  V  *  G  *  E  M  Y  *  L  P  E  G  E  K  R  E  *  F  V  *  E  Y  N  G  P  P  A  L  P  G  *  P  W  L  *  F  *  S  S  H  L  *  S  I  V  L  C  K  R  R  T  K  E  N  T  *  Y  C  C  S  D  R  V  D  Q  C  V  E  R  S  I  S  *  K  V  P  A  *  A  K  P  I  V  *  C  N  I  K  F  N  D  N  A  L  K </first_frame>
            <second_frame>  I  L  P  K  V  P  G  R  F  Y  F  Y  F  G  K  P  I  E  T  A   : G  R  K  E  E  L  K  S  K  E  K  A  H  E  L  Y  L  E  V  K  S  E  V  E  R  C  I  D  Y  L  K  E  K  R  E  S  D  S  Y  R  N  I  M  A  R  L  P  Y  Q  A  S  H  G  F  D  S  E  V  P  T  F  D  L  *  Y  Y  V  K  E  E  Q  K  K  I  L  N  T  V  A  A  I  E  L  I  N  V  *  S  A  V  L  V  K  R  Y  Q  R  R  P  N  L  *  Y  N  V  I  L  S  L  M  I  M  P  *   </second_frame>
            <third_frame>   F  F  R  K  F  L  A  V  F  T  S  T  L  A  S  Q  L  K  Q  Q  :  G  G  R  R  N  L  K  A  R  R  K  H  M  N  Y  T  W  K  *  S  L  R  L  R  D  V  L  I  T  *  R  R  K  E  R  V  I  R  I  G  I  *  W  P  A  C  L  T  R  L  A  M  A  L  I  L  K  F  P  P  L  I  Y  S  I  M  *  K  K  N  K  R  K  Y  L  I  L  L  Q  R  S  S  *  S  M  C  R  A  Q  Y  *  L  K  G  T  S  V  G  Q  T  Y  S  I  M  *  Y  *  V  *  *  *  C  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2181" stop="2121"/>
                    <exon start="2027" stop="1837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILPKVPGRFYFYFGKPIETAGRKEELKSKEKAHELYLEVKSEVERCIDYLKEKRESDSYRNIMARLPYQASHGFDSEVPTFDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10048" PGL_stop="4400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10048" e_stop="9662"/>
            <exon e_start="9430" e_stop="9379"/>
            <exon e_start="9223" e_stop="9168"/>
            <exon e_start="8542" e_stop="8384"/>
            <exon e_start="8295" e_stop="8191"/>
            <exon e_start="7099" e_stop="6993"/>
            <exon e_start="6672" e_stop="6551"/>
            <exon e_start="6314" e_stop="6206"/>
            <exon e_start="5261" e_stop="5131"/>
            <exon e_start="4553" e_stop="4400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.737" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.735" e_score="1.000"/>
          <exon-intron don_prob="0.797" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10048" e_stop="9662" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9661" i_stop="9431" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9430" e_stop="9379" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9378" i_stop="9224" i_length="155"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9223" e_stop="9168" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.737" acc_prob="0.844">
            <gDNA_intron_boundary i_start="9167" i_stop="8543" i_length="625"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8542" e_stop="8384" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.891">
            <gDNA_intron_boundary i_start="8383" i_stop="8296" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8295" e_stop="8191" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.945" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8190" i_stop="7100" i_length="1091"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7099" e_stop="6993" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="0.838" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6992" i_stop="6673" i_length="320"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6672" e_stop="6551" e_length="122"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.952">
            <gDNA_intron_boundary i_start="6550" i_stop="6315" i_length="236"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6314" e_stop="6206" e_length="109"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.735">
            <gDNA_intron_boundary i_start="6205" i_stop="5262" i_length="944"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="5261" e_stop="5131" e_length="131"/>
          </exon>
          <intron i_serial="9" don_prob="0.797" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5130" i_stop="4554" i_length="577"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="4553" e_stop="4400" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10048" stop="9662"/>
              <exon start="9430" stop="9379"/>
              <exon start="9223" stop="9168"/>
              <exon start="8542" stop="8384"/>
              <exon start="8295" stop="8269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10025" stop="9662"/>
              <exon start="9430" stop="9379"/>
              <exon start="9223" stop="9168"/>
              <exon start="8542" stop="8468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10024" stop="9662"/>
              <exon start="9430" stop="9379"/>
              <exon start="9223" stop="9168"/>
              <exon start="8542" stop="8384"/>
              <exon start="8295" stop="8291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10014" stop="9662"/>
              <exon start="9430" stop="9379"/>
              <exon start="9223" stop="9168"/>
              <exon start="8542" stop="8384"/>
              <exon start="8295" stop="8257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9989" stop="9662"/>
              <exon start="9430" stop="9379"/>
              <exon start="9223" stop="9168"/>
              <exon start="8542" stop="8468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8529" stop="8384"/>
              <exon start="8295" stop="8191"/>
              <exon start="7099" stop="6993"/>
              <exon start="6672" stop="6551"/>
              <exon start="6314" stop="6206"/>
              <exon start="5261" stop="5131"/>
              <exon start="4553" stop="4400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTATTGCAAAAGCGAAAGACATTTTGATAGATTTTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAG : GGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAA : GATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAG : ACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAG : CCACTCGTCTACGTGAATCTCAGCTGGAAAATCTGATAACGTTGTGCGAAGTCATTCCTGAGCAACTCCATCCAAGCATGGTTAAACTGTTAAGTGTGACGACAG : GTGTTCCAGCAAGGTTGGCAGTGGCAATTCCTGGCAGTGGACACTCTTTGCAACAAGCAGTAGCAGAGTTATTTCGTGGTGATGTAGCATTTTCATCCTACTTATCT : GTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAG : TGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTG : GAAGCAGACTTTAATTTGGTAACTGTCATAATGGGTGCCAATTTTTATCGACGTGGAAGACACCTTGATTTCGTTAGAGATTTTGTGCCACCAAGCACTTCTGAGTTTGACAGTGTGTATCAACCATACAG : GTGGATGGAAGTTGCCTTCAATCCTGTGATGATATCAACTCTTGAGAATGGGAATATTGTTCGGGGTCTGACTGGAATTCCTTCTGAAGGACCAGTCTTACTTGTTGGTTACCACATGATGCTTGGACTTGAACTAGTTCCTTTGGTGTCCCGT</gDNA_template>
            <first_frame> S  I  A  K  A  K  D  I  L  I  D  F  C  P  W  R  L  Y  P  P  A  L  T  P  R  P  V  S  R  R  F  S  K  V  G  T  H  A  S  A  S  P  P  Q  D  S  K  L  H  L  Q  L  Q  L  L  G  D  Q  L  P  L  S  A  S  N  R  Q  Q  Y  R  C  P  *  L  T  P  L  S  *  S  K  Q  L  L  *  I  *  K  I  S  *  N  G  A  R  I  *  L  R  P  D  P  K  V  G  H  H  A  G  F  H  P  W  T  A  L  L  L  *  K  T  P  L  Y  C  F  T  Y  Q  :  G  L  M  V  L  D  L  A  L  *  S  I  T  K  D  L  E   : R  S  S  I  Y  G  V  S  T  F  Q  L  Q  I  E  H  H  S  Q  :  T  W  C  T  W  L  K  Q  L  L  D  Q  S  I  T  M  L  Q  D  V  P  Y  I  F  L  E  N  L  L  G  D  A  L  H  L  L  L  L  L  V  I  L  I  L  I  L  H  *  F  W  Q  T  Q  :  P  L  V  Y  V  N  L  S  W  K  I  *  *  R  C  A  K  S  F  L  S  N  S  I  Q  A  W  L  N  C  *  V  *  R  Q  :  V  F  Q  Q  G  W  Q  W  Q  F  L  A  V  D  T  L  C  N  K  Q  *  Q  S  Y  F  V  V  M  *  H  F  H  P  T  Y  L :   C  W  L  M  F  Y  L  W  K  H  L  F  G  G  *  R  F  S  N  Q  L  H  L  L  S  V  L  A  S  M  L  S  D  L  R  L  W  Y  S  R   : V  E  K  I  T  *  Y  Q  A  Q  R  N  P  R  S  F  T  R  C  F  Q  T  V  K  S  G  N  L  I  T  V  G  M  P  F  S  W :   K  Q  T  L  I  W  *  L  S  *  W  V  P  I  F  I  D  V  E  D  T  L  I  S  L  E  I  L  C  H  Q  A  L  L  S  L  T  V  C  I  N  H  T   : G  G  W  K  L  P  S  I  L  *  *  Y  Q  L  L  R  M  G  I  L  F  G  V  *  L  E  F  L  L  K  D  Q  S  Y  L  L  V  T  T  *  C  L  D  L  N  *  F  L  W  C  P   </first_frame>
            <second_frame>  L  L  Q  K  R  K  T  F  *  *  I  F  V  H  G  G  Y  I  R  R  H  L  H  R  G  R  C  L  A  A  S  P  K  S  E  L  M  P  P  H  H  L  R  K  I  Q  N  C  I  Y  S  C  N  Y  W  E  I  N  C  L  Y  R  P  A  T  A  N  S  T  D  V  H  S  *  L  L  *  A  R  A  N  N  Y  F  E  Y  E  R  F  H  E  M  E  Q  G  Y  D  C  V  R  I  R  R  W  A  T  T  L  V  F  T  L  G  L  R  C  S  S  E  R  L  P  S  I  A  L  L  T  R :   D  *  W  C  W  T  W  P  Y  K  A  S  Q  K  T  W  K  :  D  L  Q  Y  M  V  S  P  R  S  S  Y  R  S  N  I  I  L  R :   P  G  V  P  G  *  S  N  C  *  I  R  A  S  P  C  S  K  T  S  H  I  S  S  W  R  I  F  W  G  M  P  C  T  C  C  C  C  S  *  S  S  Y  *  S  C  T  N  F  G  K  P  S :   H  S  S  T  *  I  S  A  G  K  S  D  N  V  V  R  S  H  S  *  A  T  P  S  K  H  G  *  T  V  K  C  D  D  R :   C  S  S  K  V  G  S  G  N  S  W  Q  W  T  L  F  A  T  S  S  S  R  V  I  S  W  *  C  S  I  F  I  L  L  I   : C  A  G  *  C  F  T  C  G  N  T  Y  L  E  A  E  D  S  Q  I  S  C  I  F  C  Q  F  S  P  P  C  C  Q  I  S  D  F  G  T  L  E  :  W  K  R  S  L  D  I  K  P  R  G  I  R  E  A  S  Q  D  A  S  K  L  *  N  P  E  I  *  *  Q  W  A  C  P  S  P   : G  S  R  L  *  F  G  N  C  H  N  G  C  Q  F  L  S  T  W  K  T  P  *  F  R  *  R  F  C  A  T  K  H  F  *  V  *  Q  C  V  S  T  I  Q  :  V  D  G  S  C  L  Q  S  C  D  D  I  N  S  *  E  W  E  Y  C  S  G  S  D  W  N  S  F  *  R  T  S  L  T  C  W  L  P  H  D  A  W  T  *  T  S  S  F  G  V  P  </second_frame>
            <third_frame>   Y  C  K  S  E  R  H  F  D  R  F  L  S  M  E  A  I  S  A  G  T  Y  T  A  A  G  V  S  P  L  L  Q  S  R  N  S  C  L  R  I  T  S  A  R  F  K  I  A  S  T  A  A  T  T  G  R  S  T  A  S  I  G  Q  Q  P  P  T  V  P  M  S  I  V  D  S  S  E  L  E  Q  T  T  T  L  N  M  K  D  F  M  K  W  S  K  D  M  I  A  S  G  S  E  G  G  P  P  R  W  F  S  P  L  D  C  A  A  P  L  K  D  S  P  L  L  L  Y  L  P   : G  I  D  G  V  G  L  G  L  I  K  H  H  K  R  L  G  K :   I  F  N  I  W  C  L  H  V  P  V  T  D  R  T  S  F  S   : D  L  V  Y  L  V  E  A  T  V  R  S  E  H  H  H  A  P  R  R  P  I  Y  L  L  G  E  S  F  G  G  C  L  A  L  A  V  A  A  R  N  P  H  I  D  L  A  L  I  L  A  N  P   : A  T  R  L  R  E  S  Q  L  E  N  L  I  T  L  C  E  V  I  P  E  Q  L  H  P  S  M  V  K  L  L  S  V  T  T   : G  V  P  A  R  L  A  V  A  I  P  G  S  G  H  S  L  Q  Q  A  V  A  E  L  F  R  G  D  V  A  F  S  S  Y  L  S  :  V  L  A  D  V  L  P  V  E  T  L  I  W  R  L  K  I  L  K  S  A  A  S  F  V  S  S  R  L  H  A  V  R  S  Q  T  L  V  L  S  S :   G  K  D  H  L  I  S  S  P  E  E  S  E  K  L  H  K  M  L  P  N  C  E  I  R  K  F  N  N  S  G  H  A  L  L  L  :  E  A  D  F  N  L  V  T  V  I  M  G  A  N  F  Y  R  R  G  R  H  L  D  F  V  R  D  F  V  P  P  S  T  S  E  F  D  S  V  Y  Q  P  Y  R :   W  M  E  V  A  F  N  P  V  M  I  S  T  L  E  N  G  N  I  V  R  G  L  T  G  I  P  S  E  G  P  V  L  L  V  G  Y  H  M  M  L  G  L  E  L  V  P  L  V  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10046" stop="9662"/>
                    <exon start="9430" stop="9379"/>
                    <exon start="9223" stop="9168"/>
                    <exon start="8542" stop="8384"/>
                    <exon start="8295" stop="8191"/>
                    <exon start="7099" stop="6993"/>
                    <exon start="6672" stop="6551"/>
                    <exon start="6314" stop="6206"/>
                    <exon start="5261" stop="5131"/>
                    <exon start="4553" stop="4400"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCKSERHFDRFLSMEAISAGTYTAAGVSPLLQSRNSCLRITSARFKIASTAATTGRSTASIGQQPPTVPMSIVDSSELEQTTTLNMKDFMKWSKDMIASGSEGGPPRWFSPLDCAAPLKDSPLLLYLPGIDGVGLGLIKHHKRLGKIFNIWCLHVPVTDRTSFSDLVYLVEATVRSEHHHAPRRPIYLLGESFGGCLALAVAARNPHIDLALILANPATRLRESQLENLITLCEVIPEQLHPSMVKLLSVTTGVPARLAVAIPGSGHSLQQAVAELFRGDVAFSSYLSVLADVLPVETLIWRLKILKSAASFVSSRLHAVRSQTLVLSSGKDHLISSPEESEKLHKMLPNCEIRKFNNSGHALLLEADFNLVTVIMGANFYRRGRHLDFVRDFVPPSTSEFDSVYQPYRWMEVAFNPVMISTLENGNIVRGLTGIPSEGPVLLVGYHMMLGLELVPLVSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10040" e_stop="9662"/>
            <exon e_start="9430" e_stop="9168"/>
            <exon e_start="8542" e_stop="8384"/>
            <exon e_start="8295" e_stop="8191"/>
            <exon e_start="7099" e_stop="6993"/>
            <exon e_start="6672" e_stop="6551"/>
            <exon e_start="6314" e_stop="6206"/>
            <exon e_start="5261" e_stop="5131"/>
            <exon e_start="4553" e_stop="4400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.997" e_score="0.995"/>
          <exon-intron don_prob="0.737" acc_prob="0.844" e_score="0.996"/>
          <exon-intron don_prob="0.970" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.735" e_score="1.000"/>
          <exon-intron don_prob="0.797" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="10040" e_stop="9662" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9661" i_stop="9431" i_length="231"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="9430" e_stop="9168" e_length="263"/>
          </exon>
          <intron i_serial="2" don_prob="0.737" acc_prob="0.844">
            <gDNA_intron_boundary i_start="9167" i_stop="8543" i_length="625"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8542" e_stop="8384" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.891">
            <gDNA_intron_boundary i_start="8383" i_stop="8296" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8295" e_stop="8191" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8190" i_stop="7100" i_length="1091"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7099" e_stop="6993" e_length="107"/>
          </exon>
          <intron i_serial="5" don_prob="0.838" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6992" i_stop="6673" i_length="320"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6672" e_stop="6551" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.952">
            <gDNA_intron_boundary i_start="6550" i_stop="6315" i_length="236"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6314" e_stop="6206" e_length="109"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.735">
            <gDNA_intron_boundary i_start="6205" i_stop="5262" i_length="944"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5261" e_stop="5131" e_length="131"/>
          </exon>
          <intron i_serial="8" don_prob="0.797" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5130" i_stop="4554" i_length="577"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4553" e_stop="4400" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10040" stop="9662"/>
              <exon start="9430" stop="9168"/>
              <exon start="8542" stop="8469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9998" stop="9662"/>
              <exon start="9430" stop="9219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9254" stop="9168"/>
              <exon start="8542" stop="8384"/>
              <exon start="8295" stop="8191"/>
              <exon start="7099" stop="6993"/>
              <exon start="6672" stop="6551"/>
              <exon start="6314" stop="6206"/>
              <exon start="5261" stop="5191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8529" stop="8384"/>
              <exon start="8295" stop="8191"/>
              <exon start="7099" stop="6993"/>
              <exon start="6672" stop="6551"/>
              <exon start="6314" stop="6206"/>
              <exon start="5261" stop="5131"/>
              <exon start="4553" stop="4400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGCGAAAGACATTTTGATAGATTTTTGTCCATGGAGGCTATATCCGCCGGCACTTACACCGCGGCCGGTGTCTCGCCGCTTCTCCAAAGTCGGAACTCATGCCTCCGCATCACCTCCGCAAGATTCAAAATTGCATCTACAGCTGCAACTACTGGGAGATCAACTGCCTCTATCGGCCAGCAACCGCCAACAGTACCGATGTCCATAGTTGACTCCTCTGAGCTAGAGCAAACAACTACTTTGAATATGAAAGATTTCATGAAATGGAGCAAGGATATGATTGCGTCCGGATCCGAAGGTGGGCCACCACGCTGGTTTTCACCCTTGGACTGCGCTGCTCCTCTGAAAGACTCCCCTCTATTGCTTTACTTACCAG : GGATTGATGGTGTTGGACTTGGCCTTATAAAGCATCACAAAAGACTTGGAAAGTAAGCTTGTTAATTGATCTTTTCGGCACAATGTCAGAATTTATATTTGATTTTCAGCACTACTATTGTCCTTAAGATGTTTGCGTTGTACTAGACTAATATATCTTGTCAAGTTTTGTTTTTGTTTTTCCGGGTGGTGCTTCCCATACGTGAAGGATCTTCAATATATGGTGTCTCCACGTTCCAGTTACAGATCGAACATCATTCTCAG : ACCTGGTGTACCTGGTTGAAGCAACTGTTAGATCAGAGCATCACCATGCTCCAAGACGTCCCATATATCTTCTTGGAGAATCTTTTGGGGGATGCCTTGCACTTGCTGTTGCTGCTCGTAATCCTCATATTGATCTTGCACTAATTTTGGCAAACCCAG : CCACTCGTCTACGTGAATCTCAGCTGGAAAATCTGATAACGTTGTGCGAAGTCATTCCTGAGCAACTCCATCCAAGCATGGTTAAACTGTTAAGTGTGACGACAG : GTGTTCCAGCAAGGTTGGCAGTGGCAATTCCTGGCAGTGGACACTCTTTGCAACAAGCAGTAGCAGAGTTATTTCGTGGTGATGTAGCATTTTCATCCTACTTATCT : GTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAG : TGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTG : GAAGCAGACTTTAATTTGGTAACTGTCATAATGGGTGCCAATTTTTATCGACGTGGAAGACACCTTGATTTCGTTAGAGATTTTGTGCCACCAAGCACTTCTGAGTTTGACAGTGTGTATCAACCATACAG : GTGGATGGAAGTTGCCTTCAATCCTGTGATGATATCAACTCTTGAGAATGGGAATATTGTTCGGGGTCTGACTGGAATTCCTTCTGAAGGACCAGTCTTACTTGTTGGTTACCACATGATGCTTGGACTTGAACTAGTTCCTTTGGTGTCCCGT</gDNA_template>
            <first_frame> K  S  E  R  H  F  D  R  F  L  S  M  E  A  I  S  A  G  T  Y  T  A  A  G  V  S  P  L  L  Q  S  R  N  S  C  L  R  I  T  S  A  R  F  K  I  A  S  T  A  A  T  T  G  R  S  T  A  S  I  G  Q  Q  P  P  T  V  P  M  S  I  V  D  S  S  E  L  E  Q  T  T  T  L  N  M  K  D  F  M  K  W  S  K  D  M  I  A  S  G  S  E  G  G  P  P  R  W  F  S  P  L  D  C  A  A  P  L  K  D  S  P  L  L  L  Y  L  P   : G  I  D  G  V  G  L  G  L  I  K  H  H  K  R  L  G  K  *  A  C  *  L  I  F  S  A  Q  C  Q  N  L  Y  L  I  F  S  T  T  I  V  L  K  M  F  A  L  Y  *  T  N  I  S  C  Q  V  L  F  L  F  F  R  V  V  L  P  I  R  E  G  S  S  I  Y  G  V  S  T  F  Q  L  Q  I  E  H  H  S  Q  :  T  W  C  T  W  L  K  Q  L  L  D  Q  S  I  T  M  L  Q  D  V  P  Y  I  F  L  E  N  L  L  G  D  A  L  H  L  L  L  L  L  V  I  L  I  L  I  L  H  *  F  W  Q  T  Q  :  P  L  V  Y  V  N  L  S  W  K  I  *  *  R  C  A  K  S  F  L  S  N  S  I  Q  A  W  L  N  C  *  V  *  R  Q  :  V  F  Q  Q  G  W  Q  W  Q  F  L  A  V  D  T  L  C  N  K  Q  *  Q  S  Y  F  V  V  M  *  H  F  H  P  T  Y  L :   C  W  L  M  F  Y  L  W  K  H  L  F  G  G  *  R  F  S  N  Q  L  H  L  L  S  V  L  A  S  M  L  S  D  L  R  L  W  Y  S  R   : V  E  K  I  T  *  Y  Q  A  Q  R  N  P  R  S  F  T  R  C  F  Q  T  V  K  S  G  N  L  I  T  V  G  M  P  F  S  W :   K  Q  T  L  I  W  *  L  S  *  W  V  P  I  F  I  D  V  E  D  T  L  I  S  L  E  I  L  C  H  Q  A  L  L  S  L  T  V  C  I  N  H  T   : G  G  W  K  L  P  S  I  L  *  *  Y  Q  L  L  R  M  G  I  L  F  G  V  *  L  E  F  L  L  K  D  Q  S  Y  L  L  V  T  T  *  C  L  D  L  N  *  F  L  W  C  P   </first_frame>
            <second_frame>  K  A  K  D  I  L  I  D  F  C  P  W  R  L  Y  P  P  A  L  T  P  R  P  V  S  R  R  F  S  K  V  G  T  H  A  S  A  S  P  P  Q  D  S  K  L  H  L  Q  L  Q  L  L  G  D  Q  L  P  L  S  A  S  N  R  Q  Q  Y  R  C  P  *  L  T  P  L  S  *  S  K  Q  L  L  *  I  *  K  I  S  *  N  G  A  R  I  *  L  R  P  D  P  K  V  G  H  H  A  G  F  H  P  W  T  A  L  L  L  *  K  T  P  L  Y  C  F  T  Y  Q  :  G  L  M  V  L  D  L  A  L  *  S  I  T  K  D  L  E  S  K  L  V  N  *  S  F  R  H  N  V  R  I  Y  I  *  F  S  A  L  L  L  S  L  R  C  L  R  C  T  R  L  I  Y  L  V  K  F  C  F  C  F  S  G  W  C  F  P  Y  V  K  D  L  Q  Y  M  V  S  P  R  S  S  Y  R  S  N  I  I  L  R :   P  G  V  P  G  *  S  N  C  *  I  R  A  S  P  C  S  K  T  S  H  I  S  S  W  R  I  F  W  G  M  P  C  T  C  C  C  C  S  *  S  S  Y  *  S  C  T  N  F  G  K  P  S :   H  S  S  T  *  I  S  A  G  K  S  D  N  V  V  R  S  H  S  *  A  T  P  S  K  H  G  *  T  V  K  C  D  D  R :   C  S  S  K  V  G  S  G  N  S  W  Q  W  T  L  F  A  T  S  S  S  R  V  I  S  W  *  C  S  I  F  I  L  L  I   : C  A  G  *  C  F  T  C  G  N  T  Y  L  E  A  E  D  S  Q  I  S  C  I  F  C  Q  F  S  P  P  C  C  Q  I  S  D  F  G  T  L  E  :  W  K  R  S  L  D  I  K  P  R  G  I  R  E  A  S  Q  D  A  S  K  L  *  N  P  E  I  *  *  Q  W  A  C  P  S  P   : G  S  R  L  *  F  G  N  C  H  N  G  C  Q  F  L  S  T  W  K  T  P  *  F  R  *  R  F  C  A  T  K  H  F  *  V  *  Q  C  V  S  T  I  Q  :  V  D  G  S  C  L  Q  S  C  D  D  I  N  S  *  E  W  E  Y  C  S  G  S  D  W  N  S  F  *  R  T  S  L  T  C  W  L  P  H  D  A  W  T  *  T  S  S  F  G  V  P  </second_frame>
            <third_frame>   K  R  K  T  F  *  *  I  F  V  H  G  G  Y  I  R  R  H  L  H  R  G  R  C  L  A  A  S  P  K  S  E  L  M  P  P  H  H  L  R  K  I  Q  N  C  I  Y  S  C  N  Y  W  E  I  N  C  L  Y  R  P  A  T  A  N  S  T  D  V  H  S  *  L  L  *  A  R  A  N  N  Y  F  E  Y  E  R  F  H  E  M  E  Q  G  Y  D  C  V  R  I  R  R  W  A  T  T  L  V  F  T  L  G  L  R  C  S  S  E  R  L  P  S  I  A  L  L  T  R :   D  *  W  C  W  T  W  P  Y  K  A  S  Q  K  T  W  K  V  S  L  L  I  D  L  F  G  T  M  S  E  F  I  F  D  F  Q  H  Y  Y  C  P  *  D  V  C  V  V  L  D  *  Y  I  L  S  S  F  V  F  V  F  P  G  G  A  S  H  T  *  R  I  F  N  I  W  C  L  H  V  P  V  T  D  R  T  S  F  S   : D  L  V  Y  L  V  E  A  T  V  R  S  E  H  H  H  A  P  R  R  P  I  Y  L  L  G  E  S  F  G  G  C  L  A  L  A  V  A  A  R  N  P  H  I  D  L  A  L  I  L  A  N  P   : A  T  R  L  R  E  S  Q  L  E  N  L  I  T  L  C  E  V  I  P  E  Q  L  H  P  S  M  V  K  L  L  S  V  T  T   : G  V  P  A  R  L  A  V  A  I  P  G  S  G  H  S  L  Q  Q  A  V  A  E  L  F  R  G  D  V  A  F  S  S  Y  L  S  :  V  L  A  D  V  L  P  V  E  T  L  I  W  R  L  K  I  L  K  S  A  A  S  F  V  S  S  R  L  H  A  V  R  S  Q  T  L  V  L  S  S :   G  K  D  H  L  I  S  S  P  E  E  S  E  K  L  H  K  M  L  P  N  C  E  I  R  K  F  N  N  S  G  H  A  L  L  L  :  E  A  D  F  N  L  V  T  V  I  M  G  A  N  F  Y  R  R  G  R  H  L  D  F  V  R  D  F  V  P  P  S  T  S  E  F  D  S  V  Y  Q  P  Y  R :   W  M  E  V  A  F  N  P  V  M  I  S  T  L  E  N  G  N  I  V  R  G  L  T  G  I  P  S  E  G  P  V  L  L  V  G  Y  H  M  M  L  G  L  E  L  V  P  L  V  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9225" stop="9168"/>
                    <exon start="8542" stop="8384"/>
                    <exon start="8295" stop="8191"/>
                    <exon start="7099" stop="6993"/>
                    <exon start="6672" stop="6551"/>
                    <exon start="6314" stop="6206"/>
                    <exon start="5261" stop="5131"/>
                    <exon start="4553" stop="4400"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIFNIWCLHVPVTDRTSFSDLVYLVEATVRSEHHHAPRRPIYLLGESFGGCLALAVAARNPHIDLALILANPATRLRESQLENLITLCEVIPEQLHPSMVKLLSVTTGVPARLAVAIPGSGHSLQQAVAELFRGDVAFSSYLSVLADVLPVETLIWRLKILKSAASFVSSRLHAVRSQTLVLSSGKDHLISSPEESEKLHKMLPNCEIRKFNNSGHALLLEADFNLVTVIMGANFYRRGRHLDFVRDFVPPSTSEFDSVYQPYRWMEVAFNPVMISTLENGNIVRGLTGIPSEGPVLLVGYHMMLGLELVPLVSR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10040" stop="9662"/>
                    <exon start="9430" stop="9375"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSERHFDRFLSMEAISAGTYTAAGVSPLLQSRNSCLRITSARFKIASTAATTGRSTASIGQQPPTVPMSIVDSSELEQTTTLNMKDFMKWSKDMIASGSEGGPPRWFSPLDCAAPLKDSPLLLYLPGIDGVGLGLIKHHKRLGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6672" e_stop="6551"/>
            <exon e_start="6314" e_stop="6206"/>
            <exon e_start="5254" e_stop="5131"/>
            <exon e_start="4553" e_stop="4423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.952" e_score="0.992"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.982"/>
          <exon-intron don_prob="0.797" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="6672" e_stop="6551" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.952">
            <gDNA_intron_boundary i_start="6550" i_stop="6315" i_length="236"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="6314" e_stop="6206" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6205" i_stop="5255" i_length="951"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5254" e_stop="5131" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.797" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5130" i_stop="4554" i_length="577"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4553" e_stop="4423" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6672" stop="6551"/>
              <exon start="6314" stop="6206"/>
              <exon start="5254" stop="5131"/>
              <exon start="4553" stop="4423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAG : TGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTG : ACTTTAATTTGGTAACTGTCATAATGGGTGCCAATTTTTATCGACGTGGAAGACACCTTGATTTCGTTAGAGATTTTGTGCCACCAAGCACTTCTGAGTTTGACAGTGTGTATCAACCATACAG : GTGGATGGAAGTTGCCTTCAATCCTGTGATGATATCAACTCTTGAGAATGGGAATATTGTTCGGGGTCTGACTGGAATTCCTTCTGAAGGACCAGTCTTACTTGTTGGTTACCACATGATGCTTGGACTTG</gDNA_template>
            <first_frame> V  L  A  D  V  L  P  V  E  T  L  I  W  R  L  K  I  L  K  S  A  A  S  F  V  S  S  R  L  H  A  V  R  S  Q  T  L  V  L  S  S :   G  K  D  H  L  I  S  S  P  E  E  S  E  K  L  H  K  M  L  P  N  C  E  I  R  K  F  N  N  S  G  H  A  L  L  L  :  T  L  I  W  *  L  S  *  W  V  P  I  F  I  D  V  E  D  T  L  I  S  L  E  I  L  C  H  Q  A  L  L  S  L  T  V  C  I  N  H  T   : G  G  W  K  L  P  S  I  L  *  *  Y  Q  L  L  R  M  G  I  L  F  G  V  *  L  E  F  L  L  K  D  Q  S  Y  L  L  V  T  T  *  C  L  D  L </first_frame>
            <second_frame>  C  W  L  M  F  Y  L  W  K  H  L  F  G  G  *  R  F  S  N  Q  L  H  L  L  S  V  L  A  S  M  L  S  D  L  R  L  W  Y  S  R   : V  E  K  I  T  *  Y  Q  A  Q  R  N  P  R  S  F  T  R  C  F  Q  T  V  K  S  G  N  L  I  T  V  G  M  P  F  S  * :   L  *  F  G  N  C  H  N  G  C  Q  F  L  S  T  W  K  T  P  *  F  R  *  R  F  C  A  T  K  H  F  *  V  *  Q  C  V  S  T  I  Q  :  V  D  G  S  C  L  Q  S  C  D  D  I  N  S  *  E  W  E  Y  C  S  G  S  D  W  N  S  F  *  R  T  S  L  T  C  W  L  P  H  D  A  W  T   </second_frame>
            <third_frame>   A  G  *  C  F  T  C  G  N  T  Y  L  E  A  E  D  S  Q  I  S  C  I  F  C  Q  F  S  P  P  C  C  Q  I  S  D  F  G  T  L  E  :  W  K  R  S  L  D  I  K  P  R  G  I  R  E  A  S  Q  D  A  S  K  L  *  N  P  E  I  *  *  Q  W  A  C  P  S  P   : D  F  N  L  V  T  V  I  M  G  A  N  F  Y  R  R  G  R  H  L  D  F  V  R  D  F  V  P  P  S  T  S  E  F  D  S  V  Y  Q  P  Y  R :   W  M  E  V  A  F  N  P  V  M  I  S  T  L  E  N  G  N  I  V  R  G  L  T  G  I  P  S  E  G  P  V  L  L  V  G  Y  H  M  M  L  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6227" stop="6206"/>
                    <exon start="5254" stop="5131"/>
                    <exon start="4553" stop="4424"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QWACPSPDFNLVTVIMGANFYRRGRHLDFVRDFVPPSTSEFDSVYQPYRWMEVAFNPVMISTLENGNIVRGLTGIPSEGPVLLVGYHMMLGL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6672" stop="6551"/>
                    <exon start="6314" stop="6206"/>
                    <exon start="5254" stop="5240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLADVLPVETLIWRLKILKSAASFVSSRLHAVRSQTLVLSSGKDHLISSPEESEKLHKMLPNCEIRKFNNSGHALLLTLIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="7099" e_stop="6993"/>
            <exon e_start="6704" e_stop="6551"/>
            <exon e_start="6314" e_stop="6206"/>
            <exon e_start="4553" e_stop="4467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.838" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7099" e_stop="6993" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.838" acc_prob="0.865">
            <gDNA_intron_boundary i_start="6992" i_stop="6705" i_length="288"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6704" e_stop="6551" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.952">
            <gDNA_intron_boundary i_start="6550" i_stop="6315" i_length="236"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6314" e_stop="6206" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6205" i_stop="4554" i_length="1652"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4553" e_stop="4467" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7099" stop="6993"/>
              <exon start="6704" stop="6551"/>
              <exon start="6314" stop="6206"/>
              <exon start="4553" stop="4467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGTTCCAGCAAGGTTGGCAGTGGCAATTCCTGGCAGTGGACACTCTTTGCAACAAGCAGTAGCAGAGTTATTTCGTGGTGATGTAGCATTTTCATCCTACTTATCT : TTTGAGCAAGAAAATGATGAAAAAGGTCGCAGGTGCTGGCTGATGTTTTACCTGTGGAAACACTTATTTGGAGGCTGAAGATTCTCAAATCAGCTGCATCTTTTGTCAGTTCTCGCCTCCATGCTGTCAGATCTCAGACTTTGGTACTCTCGAG : TGGAAAAGATCACTTGATATCAAGCCCAGAGGAATCCGAGAAGCTTCACAAGATGCTTCCAAACTGTGAAATCCGGAAATTTAATAACAGTGGGCATGCCCTTCTCCTG : GTGGATGGAAGTTGCCTTCAATCCTGTGATGATATCAACTCTTGAGAATGGGAATATTGTTCGGGGTCTGACTGGAATTCCTTCTGA</gDNA_template>
            <first_frame> V  F  Q  Q  G  W  Q  W  Q  F  L  A  V  D  T  L  C  N  K  Q  *  Q  S  Y  F  V  V  M  *  H  F  H  P  T  Y  L :   L  S  K  K  M  M  K  K  V  A  G  A  G  *  C  F  T  C  G  N  T  Y  L  E  A  E  D  S  Q  I  S  C  I  F  C  Q  F  S  P  P  C  C  Q  I  S  D  F  G  T  L  E  :  W  K  R  S  L  D  I  K  P  R  G  I  R  E  A  S  Q  D  A  S  K  L  *  N  P  E  I  *  *  Q  W  A  C  P  S  P   : G  G  W  K  L  P  S  I  L  *  *  Y  Q  L  L  R  M  G  I  L  F  G  V  *  L  E  F  L  L  </first_frame>
            <second_frame>  C  S  S  K  V  G  S  G  N  S  W  Q  W  T  L  F  A  T  S  S  S  R  V  I  S  W  *  C  S  I  F  I  L  L  I   : F  *  A  R  K  *  *  K  R  S  Q  V  L  A  D  V  L  P  V  E  T  L  I  W  R  L  K  I  L  K  S  A  A  S  F  V  S  S  R  L  H  A  V  R  S  Q  T  L  V  L  S  S :   G  K  D  H  L  I  S  S  P  E  E  S  E  K  L  H  K  M  L  P  N  C  E  I  R  K  F  N  N  S  G  H  A  L  L  L  :  V  D  G  S  C  L  Q  S  C  D  D  I  N  S  *  E  W  E  Y  C  S  G  S  D  W  N  S  F  * </second_frame>
            <third_frame>   V  P  A  R  L  A  V  A  I  P  G  S  G  H  S  L  Q  Q  A  V  A  E  L  F  R  G  D  V  A  F  S  S  Y  L  S  :  F  E  Q  E  N  D  E  K  G  R  R  C  W  L  M  F  Y  L  W  K  H  L  F  G  G  *  R  F  S  N  Q  L  H  L  L  S  V  L  A  S  M  L  S  D  L  R  L  W  Y  S  R   : V  E  K  I  T  *  Y  Q  A  Q  R  N  P  R  S  F  T  R  C  F  Q  T  V  K  S  G  N  L  I  T  V  G  M  P  F  S  W :   W  M  E  V  A  F  N  P  V  M  I  S  T  L  E  N  G  N  I  V  R  G  L  T  G  I  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6684" stop="6551"/>
                    <exon start="6314" stop="6206"/>
                    <exon start="4553" stop="4509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSQVLADVLPVETLIWRLKILKSAASFVSSRLHAVRSQTLVLSSGKDHLISSPEESEKLHKMLPNCEIRKFNNSGHALLLVDGSCLQSCDDINS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15284" PGL_stop="18700"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15284" e_stop="15534"/>
            <exon e_start="16813" e_stop="16911"/>
            <exon e_start="17003" e_stop="17111"/>
            <exon e_start="17190" e_stop="17261"/>
            <exon e_start="17398" e_stop="17403"/>
            <exon e_start="17704" e_stop="18088"/>
            <exon e_start="18672" e_stop="18700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.605" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.136" e_score="0.995"/>
          <exon-only e_score="0.517"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15284" e_stop="15534" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.988">
            <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16813" e_stop="16911" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17003" e_stop="17111" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17190" e_stop="17261" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.605">
            <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17398" e_stop="17403" e_length="6"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.756">
            <gDNA_intron_boundary i_start="17404" i_stop="17703" i_length="300"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="17704" e_stop="18088" e_length="385"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.136">
            <gDNA_intron_boundary i_start="18089" i_stop="18671" i_length="583"/>
          </intron>
          <exon e_serial="7" e_score="0.517">
            <gDNA_exon_boundary e_start="18672" e_stop="18700" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15284" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15284" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15301" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277192" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15305" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15305" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15305" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15305" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15305" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15308" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15308" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277173" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15310" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15312" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15317" stop="15534"/>
              <exon start="16813" stop="16851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15318" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15322" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="18062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15328" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="18053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15328" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="18031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15338" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="18019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15338" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15338" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15341" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15343" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15349" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15353" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="18062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15356" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15358" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279305" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15361" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15362" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15364" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15439" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15439" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="17767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15484" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="18049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16908" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="18011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17040" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
              <exon start="17704" stop="18015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17400" stop="17403"/>
              <exon start="17704" stop="18088"/>
              <exon start="18672" stop="18700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCACCAGCAGCTGAAAAGTCTTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC : GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC : TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG : GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG : GCAAAG : AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTTGTTCTGGGTTCCTTGAATACCTAAGTTATTGTTTTTTTGTAGTTTTCTTGCTTCTTGAGCATCA : GAATCAAAGACAATTATAGTAAAGAAAAA</gDNA_template>
            <first_frame> T  T  S  S  *  K  V  F  D  H  I  *  I  *  I  C  I  C  I  C  *  A  S  M  A  D  C  A  R  K  F  L  L  A  T  V  L  A  L  L  C  F  S  W  T  I  A  A  S  D  G  P  F  I  V  A  H  K  K  A  A  L  T  R  L  K  S  D  I  E  R  I  S  I  S  I  D  I  Y  N  E  G  S  A :   T  A  Y  D  V  S  L  Y  D  D  N  W  S  Q  D  V  F  E  I  V  A  G  N  T  S  M  S  W  E  R  L  D  A :   G  A  S  L  S  H  S  F  E  L  E  A  K  K  K  T  V  F  Y  G  A  P  A  V  I  T  F  R  I  P  T  K  A  A  L  Q  :  E  A  F  S  T  P  I  L  P  L  D  I  L  A  D  R  P  P  E  K  K  F  D  W  :  A  K  :  K  L  M  A  K  Y  G  S  L  I  S  V  I  S  I  V  V  L  F  V  Y  L  I  A  S  P  S  K  S  N  A  A  K  K  K  R  *  I  Q  I  S  W  L  A  T  W  S  L  F  R  Q  E  C  L  E  P  S  S  L  F  C  L  S  L  L  V  K  Q  F  M  Y  Q  F  L  T  F  T  L  V  T  T  S  K  Q  V  I  R  L  R  C  *  S  S  A  D  H  *  A  K  I  F  T  F  Y  E  N  F  V  L  G  S  L  N  T  *  V  I  V  F  L  *  F  S  C  F  L  S  I   : R  I  K  D  N  Y  S  K  E  K </first_frame>
            <second_frame>  P  P  A  A  E  K  S  L  I  I  F  E  S  E  S  V  S  V  S  V  K  Q  A  W  R  I  V  R  G  S  S  F  *  L  P  Y  *  L  Y  Y  V  S  H  G  Q  S  Q  P  P  T  G  H  L  L  S  H  T  R  R  P  L  L  L  D  S  N  P  T  S  N  G  F  P  S  P  S  T  S  T  T  K  D  L   : R  R  H  T  M  *  V  F  M  M  I  T  G  L  K  M  Y  L  K  L  S  L  V  T  H  P  C  R  G  K  G  W  T   : L  G  L  L  S  P  I  P  L  S  W  K  L  R  K  K  Q  C  F  M  G  H  Q  R  S  *  H  S  V  F  P  L  R  L  L  Y  R :   R  H  S  Q  L  Q  S  S  L  L  T  Y  *  L  I  G  P  R  R  R  S  L  T  G :   Q  R :   N  *  W  R  N  M  V  P  *  F  L  *  S  Q  L  W  F  Y  L  S  T  *  L  R  A  L  Q  S  P  M  L  R  K  R  S  A  E  Y  R  L  A  G  L  Q  L  G  H  Y  S  G  K  N  A  W  N  L  P  A  Y  S  V  C  P  C  *  S  N  S  L  C  T  S  F  *  L  L  H  L  *  Q  H  P  S  R  *  L  D  *  D  V  S  L  R  Q  I  I  K  L  R  F  S  L  F  M  R  I  L  F  W  V  P  *  I  P  K  L  L  F  F  C  S  F  L  A  S  *  A  S  :  E  S  K  T  I  I  V  K  K   </second_frame>
            <third_frame>   H  Q  Q  L  K  S  L  *  S  Y  L  N  L  N  L  Y  L  Y  L  L  S  K  H  G  G  L  C  E  E  V  P  S  S  Y  R  I  S  S  I  M  F  L  M  D  N  R  S  L  R  R  A  I  Y  C  R  T  Q  E  G  R  S  Y  S  T  Q  I  R  H  R  T  D  F  H  L  H  R  H  L  Q  R  R  I  C  :  D  G  I  R  C  E  S  L  *  *  *  L  V  S  R  C  I  *  N  C  R  W  *  H  I  H  V  V  G  K  A  G  R  :  W  G  F  S  L  P  F  L  *  V  G  S  *  E  K  N  S  V  L  W  G  T  S  G  H  N  I  P  Y  S  H  *  G  C  S  T   : G  G  I  L  N  S  N  P  P  S  *  H  T  S  *  *  A  P  G  E  E  V  *  L   : G  K   : E  I  D  G  E  I  W  F  L  D  F  C  D  L  N  C  G  S  I  C  L  P  D  C  E  P  F  K  V  Q  C  C  E  K  E  A  L  N  T  D  *  L  A  C  N  L  V  I  I  Q  A  R  M  L  G  T  F  Q  L  I  L  F  V  L  V  S  Q  T  V  Y  V  P  V  F  N  F  Y  T  C  N  N  I  Q  A  G  N  *  T  E  M  L  V  F  G  R  S  L  S  *  D  F  H  F  L  *  E  F  C  S  G  F  L  E  Y  L  S  Y  C  F  F  V  V  F  L  L  L  E  H  Q :   N  Q  R  Q  L  *  *  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15347" stop="15534"/>
                    <exon start="16813" stop="16911"/>
                    <exon start="17003" stop="17111"/>
                    <exon start="17190" stop="17261"/>
                    <exon start="17398" stop="17403"/>
                    <exon start="17704" stop="17814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASMADCARKFLLATVLALLCFSWTIAASDGPFIVAHKKAALTRLKSDIERISISIDIYNEGSATAYDVSLYDDNWSQDVFEIVAGNTSMSWERLDAGASLSHSFELEAKKKTVFYGAPAVITFRIPTKAALQEAFSTPILPLDILADRPPEKKFDWAKKLMAKYGSLISVISIVVLFVYLIASPSKSNAAKKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15301" e_stop="15534"/>
            <exon e_start="16813" e_stop="16911"/>
            <exon e_start="17003" e_stop="17111"/>
            <exon e_start="17190" e_stop="17261"/>
            <exon e_start="17398" e_stop="17455"/>
            <exon e_start="17704" e_stop="17772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.605" e_score="1.000"/>
          <exon-intron don_prob="0.202" acc_prob="0.756" e_score="0.948"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15301" e_stop="15534" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.988">
            <gDNA_intron_boundary i_start="15535" i_stop="16812" i_length="1278"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16813" e_stop="16911" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16912" i_stop="17002" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17003" e_stop="17111" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="17112" i_stop="17189" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17190" e_stop="17261" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.605">
            <gDNA_intron_boundary i_start="17262" i_stop="17397" i_length="136"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="17398" e_stop="17455" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.202" acc_prob="0.756">
            <gDNA_intron_boundary i_start="17456" i_stop="17703" i_length="248"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="17704" e_stop="17772" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15301" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277192" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15305" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15305" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15308" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15308" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277173" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15310" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15312" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15315" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17261"/>
              <exon start="17398" stop="17455"/>
              <exon start="17704" stop="17772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15317" stop="15534"/>
              <exon start="16813" stop="16851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15318" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15338" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15356" stop="15534"/>
              <exon start="16813" stop="16911"/>
              <exon start="17003" stop="17111"/>
              <exon start="17190" stop="17259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCTTTGATCATATTTGAATCTGAATCTGTATCTGTATCTGTTAAGCAAGCATGGCGGATTGTGCGAGGAAGTTCCTTCTAGCTACCGTATTAGCTCTATTATGTTTCTCATGGACAATCGCAGCCTCCGACGGGCCATTTATTGTCGCACACAAGAAGGCCGCTCTTACTCGACTCAAATCCGACATCGAACGGATTTCCATCTCCATCGACATCTACAACGAAGGATCTGC : GACGGCATACGATGTGAGTCTTTATGATGATAACTGGTCTCAAGATGTATTTGAAATTGTCGCTGGTAACACATCCATGTCGTGGGAAAGGCTGGACGC : TGGGGCTTCTCTCTCCCATTCCTTTGAGTTGGAAGCTAAGAAAAAAACAGTGTTTTATGGGGCACCAGCGGTCATAACATTCCGTATTCCCACTAAGGCTGCTCTACAG : GAGGCATTCTCAACTCCAATCCTCCCTCTTGACATACTAGCTGATAGGCCCCCGGAGAAGAAGTTTGACTGG : GCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTAC : AAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATT</gDNA_template>
            <first_frame> S  L  *  S  Y  L  N  L  N  L  Y  L  Y  L  L  S  K  H  G  G  L  C  E  E  V  P  S  S  Y  R  I  S  S  I  M  F  L  M  D  N  R  S  L  R  R  A  I  Y  C  R  T  Q  E  G  R  S  Y  S  T  Q  I  R  H  R  T  D  F  H  L  H  R  H  L  Q  R  R  I  C  :  D  G  I  R  C  E  S  L  *  *  *  L  V  S  R  C  I  *  N  C  R  W  *  H  I  H  V  V  G  K  A  G  R  :  W  G  F  S  L  P  F  L  *  V  G  S  *  E  K  N  S  V  L  W  G  T  S  G  H  N  I  P  Y  S  H  *  G  C  S  T   : G  G  I  L  N  S  N  P  P  S  *  H  T  S  *  *  A  P  G  E  E  V  *  L   : G  K  G  M  T  S  F  L  Q  *  Y  L  A  L  I  M  L  T  A  T :   N  *  W  R  N  M  V  P  *  F  L  *  S  Q  L  W  F  Y  L  S  T  *   </first_frame>
            <second_frame>  V  F  D  H  I  *  I  *  I  C  I  C  I  C  *  A  S  M  A  D  C  A  R  K  F  L  L  A  T  V  L  A  L  L  C  F  S  W  T  I  A  A  S  D  G  P  F  I  V  A  H  K  K  A  A  L  T  R  L  K  S  D  I  E  R  I  S  I  S  I  D  I  Y  N  E  G  S  A :   T  A  Y  D  V  S  L  Y  D  D  N  W  S  Q  D  V  F  E  I  V  A  G  N  T  S  M  S  W  E  R  L  D  A :   G  A  S  L  S  H  S  F  E  L  E  A  K  K  K  T  V  F  Y  G  A  P  A  V  I  T  F  R  I  P  T  K  A  A  L  Q  :  E  A  F  S  T  P  I  L  P  L  D  I  L  A  D  R  P  P  E  K  K  F  D  W  :  A  K  V  *  H  L  S  Y  N  N  I  *  L  *  *  C  L  Q  L   : Q  I  D  G  E  I  W  F  L  D  F  C  D  L  N  C  G  S  I  C  L  P  D  </second_frame>
            <third_frame>   S  L  I  I  F  E  S  E  S  V  S  V  S  V  K  Q  A  W  R  I  V  R  G  S  S  F  *  L  P  Y  *  L  Y  Y  V  S  H  G  Q  S  Q  P  P  T  G  H  L  L  S  H  T  R  R  P  L  L  L  D  S  N  P  T  S  N  G  F  P  S  P  S  T  S  T  T  K  D  L   : R  R  H  T  M  *  V  F  M  M  I  T  G  L  K  M  Y  L  K  L  S  L  V  T  H  P  C  R  G  K  G  W  T   : L  G  L  L  S  P  I  P  L  S  W  K  L  R  K  K  Q  C  F  M  G  H  Q  R  S  *  H  S  V  F  P  L  R  L  L  Y  R :   R  H  S  Q  L  Q  S  S  L  L  T  Y  *  L  I  G  P  R  R  R  S  L  T  G :   Q  R  Y  D  I  F  P  T  I  I  F  S  F  D  N  A  Y  S  Y  :  K  L  M  A  K  Y  G  S  L  I  S  V  I  S  I  V  V  L  F  V  Y  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15347" stop="15534"/>
                    <exon start="16813" stop="16911"/>
                    <exon start="17003" stop="17111"/>
                    <exon start="17190" stop="17261"/>
                    <exon start="17398" stop="17409"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASMADCARKFLLATVLALLCFSWTIAASDGPFIVAHKKAALTRLKSDIERISISIDIYNEGSATAYDVSLYDDNWSQDVFEIVAGNTSMSWERLDAGASLSHSFELEAKKKTVFYGAPAVITFRIPTKAALQEAFSTPILPLDILADRPPEKKFDWAKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16146" e_stop="16847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16146" e_stop="16847" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16146" stop="16847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16146" stop="16781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16146" stop="16603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGTATTCAAACTCTCCAGCCAGCACCTGTTTCAGATAACACTATGCACCTTAGTCTTTCTCCACCAGATCAATCTGTCAGGATTTAGATACAAATGGATGATATTGCTGAATGTGATCGGAGAGAAAAGGGCACCTTTTCCCTTTGATTGGTAAGAGGTGGATAAGGAATTGCCAAGTAAAGGGATTTGGAAACCCTCCTAGTCTGCTGTTTGAGTCCCTTGTGCTTGATGAGAAAGATTTCCTACAAGAAATTAAGAAAATACAGTCACCTTGCTGAAATTTGGTTGTTAAGTCTTGGGGGTAAAATAATAACCACTAGTGATATTTGTTGAAAATAGTATTTTCCTTCTAAATAATAATGTGTTCCTTACTTTCTTTTCATGTCATCAGCAATCTATCTCTCGGTACATTTCAAAATGATTCAAACCATGTGCTCATTTTTGAACCATGCGTGGGGTAGAATAATTCGTTGGCTTCAATGTGGTGAACAGTTAGGAATCTAAGAATCTCATTAGCTAATTAGAGAATGACTTTGCGAGATTCTTTTACCTTTTGTTGTGCAACCAACACGCTCTAAAGATTTCAGCCAGTTGCTTATGCATTATCATTTACTGATGGATGATAATGATGTGACTTTGACATGAAAAAGCTCTTTTTGTTCAGGACGGCATACGATGTGAGTCTTTATGATGATAACT</gDNA_template>
            <first_frame> S  C  I  Q  T  L  Q  P  A  P  V  S  D  N  T  M  H  L  S  L  S  P  P  D  Q  S  V  R  I  *  I  Q  M  D  D  I  A  E  C  D  R  R  E  K  G  T  F  S  L  *  L  V  R  G  G  *  G  I  A  K  *  R  D  L  E  T  L  L  V  C  C  L  S  P  L  C  L  M  R  K  I  S  Y  K  K  L  R  K  Y  S  H  L  A  E  I  W  L  L  S  L  G  G  K  I  I  T  T  S  D  I  C  *  K  *  Y  F  P  S  K  *  *  C  V  P  Y  F  L  F  M  S  S  A  I  Y  L  S  V  H  F  K  M  I  Q  T  M  C  S  F  L  N  H  A  W  G  R  I  I  R  W  L  Q  C  G  E  Q  L  G  I  *  E  S  H  *  L  I  R  E  *  L  C  E  I  L  L  P  F  V  V  Q  P  T  R  S  K  D  F  S  Q  L  L  M  H  Y  H  L  L  M  D  D  N  D  V  T  L  T  *  K  S  S  F  C  S  G  R  H  T  M  *  V  F  M  M  I  T </first_frame>
            <second_frame>  R  V  F  K  L  S  S  Q  H  L  F  Q  I  T  L  C  T  L  V  F  L  H  Q  I  N  L  S  G  F  R  Y  K  W  M  I  L  L  N  V  I  G  E  K  R  A  P  F  P  F  D  W  *  E  V  D  K  E  L  P  S  K  G  I  W  K  P  S  *  S  A  V  *  V  P  C  A  *  *  E  R  F  P  T  R  N  *  E  N  T  V  T  L  L  K  F  G  C  *  V  L  G  V  K  *  *  P  L  V  I  F  V  E  N  S  I  F  L  L  N  N  N  V  F  L  T  F  F  S  C  H  Q  Q  S  I  S  R  Y  I  S  K  *  F  K  P  C  A  H  F  *  T  M  R  G  V  E  *  F  V  G  F  N  V  V  N  S  *  E  S  K  N  L  I  S  *  L  E  N  D  F  A  R  F  F  Y  L  L  L  C  N  Q  H  A  L  K  I  S  A  S  C  L  C  I  I  I  Y  *  W  M  I  M  M  *  L  *  H  E  K  A  L  F  V  Q  D  G  I  R  C  E  S  L  *  *  *   </second_frame>
            <third_frame>   V  Y  S  N  S  P  A  S  T  C  F  R  *  H  Y  A  P  *  S  F  S  T  R  S  I  C  Q  D  L  D  T  N  G  *  Y  C  *  M  *  S  E  R  K  G  H  L  F  P  L  I  G  K  R  W  I  R  N  C  Q  V  K  G  F  G  N  P  P  S  L  L  F  E  S  L  V  L  D  E  K  D  F  L  Q  E  I  K  K  I  Q  S  P  C  *  N  L  V  V  K  S  W  G  *  N  N  N  H  *  *  Y  L  L  K  I  V  F  S  F  *  I  I  M  C  S  L  L  S  F  H  V  I  S  N  L  S  L  G  T  F  Q  N  D  S  N  H  V  L  I  F  E  P  C  V  G  *  N  N  S  L  A  S  M  W  *  T  V  R  N  L  R  I  S  L  A  N  *  R  M  T  L  R  D  S  F  T  F  C  C  A  T  N  T  L  *  R  F  Q  P  V  A  Y  A  L  S  F  T  D  G  *  *  *  C  D  F  D  M  K  K  L  F  L  F  R  T  A  Y  D  V  S  L  Y  D  D  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0098J01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="17388" e_stop="18024"/>
            <exon e_start="18681" e_stop="18700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.983"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="17388" e_stop="18024" e_length="637"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18025" i_stop="18680" i_length="656"/>
          </intron>
          <exon e_serial="2" e_score="0.650">
            <gDNA_exon_boundary e_start="18681" e_stop="18700" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17388" stop="18024"/>
              <exon start="18681" stop="18700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375947" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATCACAGGCAAAGGTATGACATCTTTCCTACAATAATATTTAGCTTTGATAATGCTTACAGCTACGTAAGTTTACATAGAAATAACCCCTTACTAGGTCATCAATCAATATCTGATTTAGGAAAAAAACACATCTGAATTCAGAAAGAATCCGGGCTGCATGGATGGAAAAATTCATCTTATAAACATCTCCCTAAGTTCGACATTTTAAGTTGAATCTATAATTTCTGCATCGTACATGTCCCATGCTTGGTACTTAATTGAATTATAAAATTATGAGAATTAGGATCTCATTTATCACACCTTGTTTACAGAAATTGATGGCGAAATATGGTTCCTTGATTTCTGTGATCTCAATTGTGGTTCTATTTGTCTACCTGATTGCGAGCCCTTCAAAGTCCAATGCTGCGAAAAAGAAGCGCTGAATACAGATTAGCTGGCTTGCAACTTGGTCATTATTCAGGCAAGAATGCTTGGAACCTTCCAGCTTATTCTGTTTGTCCTTGTTAGTCAAACAGTTTATGTACCAGTTTTTAACTTTTACACTTGTAACAACATCCAAGCAGGTAATTAGACTGAGATGTTAGTCTTCGGCAGATCATTAAGCTAAGATTTTCACTTTTTATGAGAATTTT : ACAATTATAGTAAAGAAAAA</gDNA_template>
            <first_frame> F  I  T  G  K  G  M  T  S  F  L  Q  *  Y  L  A  L  I  M  L  T  A  T  *  V  Y  I  E  I  T  P  Y  *  V  I  N  Q  Y  L  I  *  E  K  N  T  S  E  F  R  K  N  P  G  C  M  D  G  K  I  H  L  I  N  I  S  L  S  S  T  F  *  V  E  S  I  I  S  A  S  Y  M  S  H  A  W  Y  L  I  E  L  *  N  Y  E  N  *  D  L  I  Y  H  T  L  F  T  E  I  D  G  E  I  W  F  L  D  F  C  D  L  N  C  G  S  I  C  L  P  D  C  E  P  F  K  V  Q  C  C  E  K  E  A  L  N  T  D  *  L  A  C  N  L  V  I  I  Q  A  R  M  L  G  T  F  Q  L  I  L  F  V  L  V  S  Q  T  V  Y  V  P  V  F  N  F  Y  T  C  N  N  I  Q  A  G  N  *  T  E  M  L  V  F  G  R  S  L  S  *  D  F  H  F  L  *  E  F   : Y  N  Y  S  K  E  K </first_frame>
            <second_frame>  S  S  Q  A  K  V  *  H  L  S  Y  N  N  I  *  L  *  *  C  L  Q  L  R  K  F  T  *  K  *  P  L  T  R  S  S  I  N  I  *  F  R  K  K  T  H  L  N  S  E  R  I  R  A  A  W  M  E  K  F  I  L  *  T  S  P  *  V  R  H  F  K  L  N  L  *  F  L  H  R  T  C  P  M  L  G  T  *  L  N  Y  K  I  M  R  I  R  I  S  F  I  T  P  C  L  Q  K  L  M  A  K  Y  G  S  L  I  S  V  I  S  I  V  V  L  F  V  Y  L  I  A  S  P  S  K  S  N  A  A  K  K  K  R  *  I  Q  I  S  W  L  A  T  W  S  L  F  R  Q  E  C  L  E  P  S  S  L  F  C  L  S  L  L  V  K  Q  F  M  Y  Q  F  L  T  F  T  L  V  T  T  S  K  Q  V  I  R  L  R  C  *  S  S  A  D  H  *  A  K  I  F  T  F  Y  E  N  F  :  T  I  I  V  K  K   </second_frame>
            <third_frame>   H  H  R  Q  R  Y  D  I  F  P  T  I  I  F  S  F  D  N  A  Y  S  Y  V  S  L  H  R  N  N  P  L  L  G  H  Q  S  I  S  D  L  G  K  K  H  I  *  I  Q  K  E  S  G  L  H  G  W  K  N  S  S  Y  K  H  L  P  K  F  D  I  L  S  *  I  Y  N  F  C  I  V  H  V  P  C  L  V  L  N  *  I  I  K  L  *  E  L  G  S  H  L  S  H  L  V  Y  R  N  *  W  R  N  M  V  P  *  F  L  *  S  Q  L  W  F  Y  L  S  T  *  L  R  A  L  Q  S  P  M  L  R  K  R  S  A  E  Y  R  L  A  G  L  Q  L  G  H  Y  S  G  K  N  A  W  N  L  P  A  Y  S  V  C  P  C  *  S  N  S  L  C  T  S  F  *  L  L  H  L  *  Q  H  P  S  R  *  L  D  *  D  V  S  L  R  Q  I  I  K  L  R  F  S  L  F  M  R  I  L :   Q  L  *  *  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0098J01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23071" PGL_stop="24921"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23071" e_stop="23260"/>
            <exon e_start="23876" e_stop="23965"/>
            <exon e_start="24036" e_stop="24136"/>
            <exon e_start="24239" e_stop="24285"/>
            <exon e_start="24372" e_stop="24448"/>
            <exon e_start="24540" e_stop="24921"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.590" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.632" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23071" e_stop="23260" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.590">
            <gDNA_intron_boundary i_start="23261" i_stop="23875" i_length="615"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23876" e_stop="23965" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.849" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23966" i_stop="24035" i_length="70"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24036" e_stop="24136" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.632" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24137" i_stop="24238" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24239" e_stop="24285" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.922" acc_prob="0.984">
            <gDNA_intron_boundary i_start="24286" i_stop="24371" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24372" e_stop="24448" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.882" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24449" i_stop="24539" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="24540" e_stop="24921" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23071" stop="23260"/>
              <exon start="23876" stop="23965"/>
              <exon start="24036" stop="24136"/>
              <exon start="24239" stop="24285"/>
              <exon start="24372" stop="24448"/>
              <exon start="24540" stop="24921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGGAGATAACCGAGGCGTATGGAGTAATGGCAGATGGAAACAACAATAACAGTAACAGTATGATGAATCCTCCAACTCCCACCAAAAGAAGTCGCAGCCAGAGGCGTAGGCGTTCTTCCCTCAACTTCACTTCCCTGGATTTTCTCTCACACGTGCCACCACCTCTTCCTCCTTTGCCCCCCGCACGT : GTACTTGAACCAACAGGGTTCAGATTTCTCTTCGACAAGCAGCTCCAGAACAGTGATGTCAGCTCCCTGAGAAGAATAGTTGTGCCCAAG : AAAGCAGCTGAGCGATATCTTCCAGCTCTTGAGATCAAAGAAGGGTTTCCCATCACAATGGATGACATGGATGGTATCCATGTTTGGAGTTTCAGATACAG : GTACTGGCCAAATAACAGCAGCCGAATGTATGTGCTTGAAAATACTG : GTGACTTTGTCCAAACACATGAATTGCGCCAAGGAGACTACTTTGCACTCCACTACAATGATCAAAAGCAGATTTAT : GGTATTGAAGCGAGGAAAGCTGGAAGTGGAGCGGTATTCCGAGGTTATGAAGCGGAGGACGTGATTTTAACTGATTATGCACAGGCTGCAGATGATGGGAATGGAGCGCTTATGAATGAAGCAGAAATGGATATGTCCAGCTTTTACTTCCCTGCAATGGACAACGAGATGGGCATGTCCTTCATTTATGATACCAGCTTCTGGAACGAGCCTGCCTTCGACTTTGTATGGGGTCCTATGACCTATTACTCAACTAATGTATATCCAATGCCAAGCTTTGGGTCCATTGAAGACAGCTTCAGTGTGGATGATTTCTACTGAAGACAGAGTCCAATACAGACATACTACTAATCCCATGCAGCCTTGTAATCTAATGCATACT</gDNA_template>
            <first_frame> D  G  D  N  R  G  V  W  S  N  G  R  W  K  Q  Q  *  Q  *  Q  Y  D  E  S  S  N  S  H  Q  K  K  S  Q  P  E  A  *  A  F  F  P  Q  L  H  F  P  G  F  S  L  T  R  A  T  T  S  S  S  F  A  P  R  T   : C  T  *  T  N  R  V  Q  I  S  L  R  Q  A  A  P  E  Q  *  C  Q  L  P  E  K  N  S  C  A  Q   : E  S  S  *  A  I  S  S  S  S  *  D  Q  R  R  V  S  H  H  N  G  *  H  G  W  Y  P  C  L  E  F  Q  I  Q  :  V  L  A  K  *  Q  Q  P  N  V  C  A  *  K  Y  W :   *  L  C  P  N  T  *  I  A  P  R  R  L  L  C  T  P  L  Q  *  S  K  A  D  L   : W  Y  *  S  E  E  S  W  K  W  S  G  I  P  R  L  *  S  G  G  R  D  F  N  *  L  C  T  G  C  R  *  W  E  W  S  A  Y  E  *  S  R  N  G  Y  V  Q  L  L  L  P  C  N  G  Q  R  D  G  H  V  L  H  L  *  Y  Q  L  L  E  R  A  C  L  R  L  C  M  G  S  Y  D  L  L  L  N  *  C  I  S  N  A  K  L  W  V  H  *  R  Q  L  Q  C  G  *  F  L  L  K  T  E  S  N  T  D  I  L  L  I  P  C  S  L  V  I  *  C  I   </first_frame>
            <second_frame>  M  E  I  T  E  A  Y  G  V  M  A  D  G  N  N  N  N  S  N  S  M  M  N  P  P  T  P  T  K  R  S  R  S  Q  R  R  R  R  S  S  L  N  F  T  S  L  D  F  L  S  H  V  P  P  P  L  P  P  L  P  P  A  R  :  V  L  E  P  T  G  F  R  F  L  F  D  K  Q  L  Q  N  S  D  V  S  S  L  R  R  I  V  V  P  K  :  K  A  A  E  R  Y  L  P  A  L  E  I  K  E  G  F  P  I  T  M  D  D  M  D  G  I  H  V  W  S  F  R  Y  R :   Y  W  P  N  N  S  S  R  M  Y  V  L  E  N  T   : G  D  F  V  Q  T  H  E  L  R  Q  G  D  Y  F  A  L  H  Y  N  D  Q  K  Q  I  Y  :  G  I  E  A  R  K  A  G  S  G  A  V  F  R  G  Y  E  A  E  D  V  I  L  T  D  Y  A  Q  A  A  D  D  G  N  G  A  L  M  N  E  A  E  M  D  M  S  S  F  Y  F  P  A  M  D  N  E  M  G  M  S  F  I  Y  D  T  S  F  W  N  E  P  A  F  D  F  V  W  G  P  M  T  Y  Y  S  T  N  V  Y  P  M  P  S  F  G  S  I  E  D  S  F  S  V  D  D  F  Y  *  R  Q  S  P  I  Q  T  Y  Y  *  S  H  A  A  L  *  S  N  A  Y  </second_frame>
            <third_frame>   W  R  *  P  R  R  M  E  *  W  Q  M  E  T  T  I  T  V  T  V  *  *  I  L  Q  L  P  P  K  E  V  A  A  R  G  V  G  V  L  P  S  T  S  L  P  W  I  F  S  H  T  C  H  H  L  F  L  L  C  P  P  H  V :   Y  L  N  Q  Q  G  S  D  F  S  S  T  S  S  S  R  T  V  M  S  A  P  *  E  E  *  L  C  P  R :   K  Q  L  S  D  I  F  Q  L  L  R  S  K  K  G  F  P  S  Q  W  M  T  W  M  V  S  M  F  G  V  S  D  T   : G  T  G  Q  I  T  A  A  E  C  M  C  L  K  I  L  :  V  T  L  S  K  H  M  N  C  A  K  E  T  T  L  H  S  T  T  M  I  K  S  R  F  M :   V  L  K  R  G  K  L  E  V  E  R  Y  S  E  V  M  K  R  R  T  *  F  *  L  I  M  H  R  L  Q  M  M  G  M  E  R  L  *  M  K  Q  K  W  I  C  P  A  F  T  S  L  Q  W  T  T  R  W  A  C  P  S  F  M  I  P  A  S  G  T  S  L  P  S  T  L  Y  G  V  L  *  P  I  T  Q  L  M  Y  I  Q  C  Q  A  L  G  P  L  K  T  A  S  V  W  M  I  S  T  E  D  R  V  Q  Y  R  H  T  T  N  P  M  Q  P  C  N  L  M  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23072" stop="23260"/>
                    <exon start="23876" stop="23965"/>
                    <exon start="24036" stop="24136"/>
                    <exon start="24239" stop="24285"/>
                    <exon start="24372" stop="24448"/>
                    <exon start="24540" stop="24860"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEITEAYGVMADGNNNNSNSMMNPPTPTKRSRSQRRRRSSLNFTSLDFLSHVPPPLPPLPPARVLEPTGFRFLFDKQLQNSDVSSLRRIVVPKKAAERYLPALEIKEGFPITMDDMDGIHVWSFRYRYWPNNSSRMYVLENTGDFVQTHELRQGDYFALHYNDQKQIYGIEARKAGSGAVFRGYEAEDVILTDYAQAADDGNGALMNEAEMDMSSFYFPAMDNEMGMSFIYDTSFWNEPAFDFVWGPMTYYSTNVYPMPSFGSIEDSFSVDDFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28445" PGL_stop="25386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28445" e_stop="28039"/>
            <exon e_start="27793" e_stop="27432"/>
            <exon e_start="27349" e_stop="27306"/>
            <exon e_start="26400" e_stop="26186"/>
            <exon e_start="26058" e_stop="25934"/>
            <exon e_start="25813" e_stop="25386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.591" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.384" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28445" e_stop="28039" e_length="407"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.591">
            <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27793" e_stop="27432" e_length="362"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.981">
            <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27349" e_stop="27306" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.938">
            <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26400" e_stop="26186" e_length="215"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.384">
            <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26058" e_stop="25934" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="0.958">
            <gDNA_exon_boundary e_start="25813" e_stop="25386" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28445" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28445" stop="28039"/>
              <exon start="27793" stop="27457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28436" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28436" stop="28039"/>
              <exon start="27793" stop="27465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28436" stop="28039"/>
              <exon start="27793" stop="27557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28435" stop="28039"/>
              <exon start="27793" stop="27505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28435" stop="28039"/>
              <exon start="27793" stop="27558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28435" stop="28039"/>
              <exon start="27793" stop="27631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28435" stop="28039"/>
              <exon start="27793" stop="27742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28435" stop="28039"/>
              <exon start="27793" stop="27750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28431" stop="28039"/>
              <exon start="27793" stop="27716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28430" stop="28039"/>
              <exon start="27793" stop="27580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28430" stop="28039"/>
              <exon start="27793" stop="27582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28421" stop="28039"/>
              <exon start="27793" stop="27726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28417" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28417" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28402" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28400" stop="28039"/>
              <exon start="27793" stop="27559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28399" stop="28039"/>
              <exon start="27793" stop="27582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28398" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28395" stop="28039"/>
              <exon start="27793" stop="27527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28392" stop="28039"/>
              <exon start="27793" stop="27516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28389" stop="28039"/>
              <exon start="27793" stop="27550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28364" stop="28039"/>
              <exon start="27793" stop="27647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28350" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28261" stop="28039"/>
              <exon start="27793" stop="27519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28259" stop="28039"/>
              <exon start="27793" stop="27467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28213" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28194" stop="28039"/>
              <exon start="27793" stop="27558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28123" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28123" stop="28039"/>
              <exon start="27793" stop="27467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28101" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28100" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28088" stop="28039"/>
              <exon start="27793" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27770" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27761" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27757" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27709" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27709" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27686" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27681" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27672" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27667" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27666" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27659" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27604" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27604" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27544" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27529" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27497" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27470" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27444" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27342" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26399" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26388" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26388" stop="26186"/>
              <exon start="26058" stop="25988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26362" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25991" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25609" stop="25425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTGGAAATTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG : ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGGATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGGGATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG : CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT : ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT : GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT : GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAAGTATAGTGGAGGCTGCTATATGATTTGCTTTGTTCATTTTTAACTGTCTGATGTACCAAAAAATGTTCTAAAAAAACTTTCC</gDNA_template>
            <first_frame> R  V  E  I  V  L  G  R  N  R  K  R  R  Y  S  E  S  E  T  R  F  F  I  C  L  L  *  S  P  I  S  D  L  R  S  P  I  S  D  L  N  L  N  L  C  Q  W  R  T  P  A  V  S  L  F  F  Q  A  F  S  T  P  Q  H  L  L  F  L  L  *  L  P  K  P  L  L  F  Q  K  P  P  V  F  P  T  T  T  S  L  F  R  H  L  M  N  L  A  R  S  R  C  T  P  R  S  F  T  L  P  V  P  S  V  V  S  S  V  V  V  S  L  T  W  L  S  L  H  S  I  S  S  N  V  T  C  R :   L  T  L  R  N  T  R  A  Y  R  L  D  S  A  S  F  L  R  S  K  V  P  G  D  S  S  G  D  G  F  L  P  C  *  V  T  V  L  R  V  H  A  S  L  D  S  M  N  S  S  R  S  T  T  R  T  S  P  E  Q  K  M  L  Q  N  T  K  L  *  Y  T  L  L  V  L  H  L  L  K  *  L  Q  I  L  L  F  A  H  L  K  L  *  R  F  V  F  R  H  S  L  V  S  L  G  D  C  L  M  D  C  R  N  L  L  D  L  K  V  P  W   : A  C  T  K  A  W  Y  L  F  G  D  V  R  F  H  :  I  Q  *  *  S  L  R  P  L  R  L  L  W  R  *  S  T  S  M  Q  S  Q  S  L  K  T  S  A  A  N  L  C  N  L  V  L  V  L  L  V  D  I  *  L  V  S  S  V  P  L  Y  P  I  L  L  T  I  L  S  R  S  S  T  M  R  R  V  Q  L  L  V  M :   P  *  R  R  *  E  Y  W  A  S  L  P  V  V  Y  L  Y  V  L  S  *  L  E  L  L  L  V  L  N  G  E  S  M  M  L  S  R  F  L  L  G   : C  Q  Q  L  V  V  L  L  L  L  Y  L  L  T  L  R  L  R  R  C  R  I  E  N  K  L  I  L  H  Q  V  *  K  *  T  S  P  D  *  T  I  N  I  D  C  R  C  S  L  S  A  L  S  *  *  A  S  W  R  V  F  F  R  S  T  I  F  T  I  L  Y  F  S  D  F  Q  I  F  G  E  G  E  F  P  *  N  L  S  I  A  D  V  F  F  C  *  N  R  *  K  N  Q  F  D  A  K  L  F  P  F  E  M  G  I  T  K  Y  S  G  G  C  Y  M  I  C  F  V  H  F  *  L  S  D  V  P  K  N  V  L  K  K  L  S </first_frame>
            <second_frame>  E  W  K  L  F  *  V  E  I  E  K  G  G  I  R  R  A  R  R  D  S  S  F  A  F  S  D  L  R  S  P  I  S  D  L  R  S  P  I  S  I  *  I  C  V  N  G  E  L  P  P  S  V  S  S  S  K  L  S  L  L  P  N  I  F  F  F  F  F  N  S  Q  N  P  C  C  S  R  N  H  Q  C  S  Q  Q  Q  P  H  Y  S  G  T  *  *  T  W  Q  D  R  D  V  L  P  A  V  L  R  C  L  Y  L  R  W  Y  P  Q  L  W  S  H  S  H  G  C  H  S  T  R  S  R  Q  M  *  H  A   : D  *  P  C  E  I  Q  E  H  I  V  W  I  R  R  P  S  *  G  A  R  S  Q  G  I  L  Q  G  M  G  S  Y  P  V  R  L  Q  C  S  G  C  M  Q  V  W  I  L  *  I  L  Q  E  V  L  L  G  P  R  R  S  R  K  C  C  K  I  Q  N  S  D  I  P  C  W  F  C  I  C  *  S  D  C  R  Y  C  S  L  P  I  *  S  C  K  G  S  C  S  D  T  A  W  F  R  *  G  I  V  *  W  I  A  E  I  C  *  I  *  R  S  H  G  :  L  V  Q  R  L  G  T  S  L  G  T  S  D  S  I :   Y  N  D  E  V  C  V  L  *  D  Y  C  G  D  D  L  Q  A  C  S  P  K  A  *  K  R  V  Q  Q  I  Y  A  T  W  Y  *  F  C  W  W  I  Y  S  W  C  L  L  C  H  C  I  P  S  C  *  Q  S  C  L  V  P  Q  Q  C  E  G  C  N  C  W  *   : C  R  K  E  D  R  S  I  G  P  L  Y  P  W  S  T  S  T  Y  C  H  D  W  N  S  Y  W  C  S  M  G  N  L  *  C  F  Q  G  F  C  W  A  :  A  N  N  W  W  C  C  S  C  C  T  C  *  L  *  G  C  E  G  V  G  L  R  T  N  *  F  F  T  K  F  K  S  R  L  L  Q  I  K  Q  *  T  *  I  A  D  V  P  *  V  L  F  R  S  K  Q  A  G  E  C  S  F  A  Q  Q  S  L  Q  F  Y  I  S  L  I  F  K  F  L  E  R  G  S  S  P  K  T  *  A  L  R  M  S  F  F  V  R  T  D  K  K  I  N  L  M  L  S  F  S  H  S  R  W  E  *  Q  S  I  V  E  A  A  I  *  F  A  L  F  I  F  N  C  L  M  Y  Q  K  M  F  *  K  N  F   </second_frame>
            <third_frame>   S  G  N  C  F  R  S  K  *  K  K  E  V  F  G  E  R  D  E  I  L  H  L  P  S  L  I  S  D  L  R  S  P  I  S  D  L  R  S  Q  S  E  S  V  S  M  E  N  S  R  R  Q  S  L  L  P  S  F  L  Y  S  P  T  S  S  F  S  S  L  T  P  K  T  L  A  V  P  E  T  T  S  V  P  N  N  N  L  I  I  P  A  P  N  E  P  G  K  I  E  M  Y  S  P  Q  F  Y  A  A  C  T  F  G  G  I  L  S  C  G  L  T  H  M  A  V  T  P  L  D  L  V  K  C  N  M  Q  :  I  D  P  A  K  Y  K  S  I  S  S  G  F  G  V  L  L  K  E  Q  G  P  R  G  F  F  R  G  W  V  P  T  L  L  G  Y  S  A  Q  G  A  C  K  F  G  F  Y  E  F  F  K  K  Y  Y  S  D  L  A  G  A  E  N  A  A  K  Y  K  T  L  I  Y  L  A  G  S  A  S  A  E  V  I  A  D  I  A  L  C  P  F  E  A  V  K  V  R  V  Q  T  Q  P  G  F  A  R  G  L  S  D  G  L  P  K  F  V  R  S  E  G  P  M  G :   L  Y  K  G  L  V  P  L  W  G  R  Q  I  P   : Y  T  M  M  K  F  A  S  F  E  T  I  V  E  M  I  Y  K  H  A  V  P  K  P  K  N  E  C  S  K  S  M  Q  L  G  I  S  F  A  G  G  Y  I  A  G  V  F  C  A  I  V  S  H  P  A  D  N  L  V  S  F  L  N  N  A  K  G  A  T  V  G  D  :  A  V  K  K  I  G  V  L  G  L  F  T  R  G  L  P  L  R  I  V  M  I  G  T  L  T  G  A  Q  W  G  I  Y  D  A  F  K  V  F  V  G  L :   P  T  T  G  G  V  A  P  A  V  P  A  D  S  E  V  A  K  V  *  D  *  E  Q  I  N  S  S  P  S  L  K  V  D  F  S  R  L  N  N  K  H  R  L  Q  M  F  L  K  C  S  F  V  V  S  K  L  E  S  V  L  S  L  N  N  L  Y  N  F  I  F  L  *  F  S  N  F  W  R  G  G  V  P  L  K  L  K  H  C  G  C  L  F  L  L  E  Q  I  K  K  S  I  *  C  *  A  F  P  I  R  D  G  N  N  K  V  *  W  R  L  L  Y  D  L  L  C  S  F  L  T  V  *  C  T  K  K  C  S  K  K  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28416" stop="28039"/>
                    <exon start="27793" stop="27432"/>
                    <exon start="27349" stop="27306"/>
                    <exon start="26400" stop="26186"/>
                    <exon start="26058" stop="25934"/>
                    <exon start="25813" stop="25753"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKEVFGERDEILHLPSLISDLRSPISDLRSQSESVSMENSRRQSLLPSFLYSPTSSFSSLTPKTLAVPETTSVPNNNLIIPAPNEPGKIEMYSPQFYAACTFGGILSCGLTHMAVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGPRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDLAGAENAAKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGPMGLYKGLVPLWGRQIPYTMMKFASFETIVEMIYKHAVPKPKNECSKSMQLGISFAGGYIAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKIGVLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGVAPAVPADSEVAKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28435" e_stop="28039"/>
            <exon e_start="27793" e_stop="27660"/>
            <exon e_start="27479" e_stop="27432"/>
            <exon e_start="27349" e_stop="27306"/>
            <exon e_start="26400" e_stop="26186"/>
            <exon e_start="26058" e_stop="25934"/>
            <exon e_start="25813" e_stop="25386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.591" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.384" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28435" e_stop="28039" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.591">
            <gDNA_intron_boundary i_start="28038" i_stop="27794" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27793" e_stop="27660" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27659" i_stop="27480" i_length="180"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27479" e_stop="27432" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.981">
            <gDNA_intron_boundary i_start="27431" i_stop="27350" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27349" e_stop="27306" e_length="44"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.938">
            <gDNA_intron_boundary i_start="27305" i_stop="26401" i_length="905"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26400" e_stop="26186" e_length="215"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.384">
            <gDNA_intron_boundary i_start="26185" i_stop="26059" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26058" e_stop="25934" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25933" i_stop="25814" i_length="120"/>
          </intron>
          <exon e_serial="7" e_score="0.958">
            <gDNA_exon_boundary e_start="25813" e_stop="25386" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28435" stop="28039"/>
              <exon start="27793" stop="27742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28435" stop="28039"/>
              <exon start="27793" stop="27750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28431" stop="28039"/>
              <exon start="27793" stop="27716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28421" stop="28039"/>
              <exon start="27793" stop="27726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28277" stop="28039"/>
              <exon start="27793" stop="27660"/>
              <exon start="27479" stop="27445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27470" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27444" stop="27432"/>
              <exon start="27349" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27342" stop="27306"/>
              <exon start="26400" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26399" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26388" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26388" stop="26186"/>
              <exon start="26058" stop="25988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26362" stop="26186"/>
              <exon start="26058" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25991" stop="25934"/>
              <exon start="25813" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25660" stop="25468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25609" stop="25425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATCTCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCTACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTCCGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCACTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAG : ATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCGTCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTGG : ATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGG : CTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTCCAT : ATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCAAATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCTCGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGAT : GCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTACGTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCT : GCCAACAACTGGTGGTGTTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAACAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCTCCAGATTAAACAATAAACATAGATTGCAGATGTTCCTTAAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATCTTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTTGTTAGAACAGATAAAAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAAGTATAGTGGAGGCTGCTATATGATTTGCTTTGTTCATTTTTAACTGTCTGATGTACCAAAAAATGTTCTAAAAAAACTTTCC</gDNA_template>
            <first_frame> L  F  *  V  E  I  E  K  G  G  I  R  R  A  R  R  D  S  S  F  A  F  S  D  L  R  S  P  I  S  D  L  R  S  P  I  S  I  *  I  C  V  N  G  E  L  P  P  S  V  S  S  S  K  L  S  L  L  P  N  I  F  F  F  F  F  N  S  Q  N  P  C  C  S  R  N  H  Q  C  S  Q  Q  Q  P  H  Y  S  G  T  *  *  T  W  Q  D  R  D  V  L  P  A  V  L  R  C  L  Y  L  R  W  Y  P  Q  L  W  S  H  S  H  G  C  H  S  T  R  S  R  Q  M  *  H  A   : D  *  P  C  E  I  Q  E  H  I  V  W  I  R  R  P  S  *  G  A  R  S  Q  G  I  L  Q  G  M  G  S  Y  P  V  R  L  Q  C  S  G  C  M  Q  V  W  :  I  V  *  W  I  A  E  I  C  *  I  *  R  S  H  G  :  L  V  Q  R  L  G  T  S  L  G  T  S  D  S  I :   Y  N  D  E  V  C  V  L  *  D  Y  C  G  D  D  L  Q  A  C  S  P  K  A  *  K  R  V  Q  Q  I  Y  A  T  W  Y  *  F  C  W  W  I  Y  S  W  C  L  L  C  H  C  I  P  S  C  *  Q  S  C  L  V  P  Q  Q  C  E  G  C  N  C  W  *   : C  R  K  E  D  R  S  I  G  P  L  Y  P  W  S  T  S  T  Y  C  H  D  W  N  S  Y  W  C  S  M  G  N  L  *  C  F  Q  G  F  C  W  A  :  A  N  N  W  W  C  C  S  C  C  T  C  *  L  *  G  C  E  G  V  G  L  R  T  N  *  F  F  T  K  F  K  S  R  L  L  Q  I  K  Q  *  T  *  I  A  D  V  P  *  V  L  F  R  S  K  Q  A  G  E  C  S  F  A  Q  Q  S  L  Q  F  Y  I  S  L  I  F  K  F  L  E  R  G  S  S  P  K  T  *  A  L  R  M  S  F  F  V  R  T  D  K  K  I  N  L  M  L  S  F  S  H  S  R  W  E  *  Q  S  I  V  E  A  A  I  *  F  A  L  F  I  F  N  C  L  M  Y  Q  K  M  F  *  K  N  F   </first_frame>
            <second_frame>  C  F  R  S  K  *  K  K  E  V  F  G  E  R  D  E  I  L  H  L  P  S  L  I  S  D  L  R  S  P  I  S  D  L  R  S  Q  S  E  S  V  S  M  E  N  S  R  R  Q  S  L  L  P  S  F  L  Y  S  P  T  S  S  F  S  S  L  T  P  K  T  L  A  V  P  E  T  T  S  V  P  N  N  N  L  I  I  P  A  P  N  E  P  G  K  I  E  M  Y  S  P  Q  F  Y  A  A  C  T  F  G  G  I  L  S  C  G  L  T  H  M  A  V  T  P  L  D  L  V  K  C  N  M  Q  :  I  D  P  A  K  Y  K  S  I  S  S  G  F  G  V  L  L  K  E  Q  G  P  R  G  F  F  R  G  W  V  P  T  L  L  G  Y  S  A  Q  G  A  C  K  F  G :   L  S  D  G  L  P  K  F  V  R  S  E  G  P  M  G :   L  Y  K  G  L  V  P  L  W  G  R  Q  I  P   : Y  T  M  M  K  F  A  S  F  E  T  I  V  E  M  I  Y  K  H  A  V  P  K  P  K  N  E  C  S  K  S  M  Q  L  G  I  S  F  A  G  G  Y  I  A  G  V  F  C  A  I  V  S  H  P  A  D  N  L  V  S  F  L  N  N  A  K  G  A  T  V  G  D  :  A  V  K  K  I  G  V  L  G  L  F  T  R  G  L  P  L  R  I  V  M  I  G  T  L  T  G  A  Q  W  G  I  Y  D  A  F  K  V  F  V  G  L :   P  T  T  G  G  V  A  P  A  V  P  A  D  S  E  V  A  K  V  *  D  *  E  Q  I  N  S  S  P  S  L  K  V  D  F  S  R  L  N  N  K  H  R  L  Q  M  F  L  K  C  S  F  V  V  S  K  L  E  S  V  L  S  L  N  N  L  Y  N  F  I  F  L  *  F  S  N  F  W  R  G  G  V  P  L  K  L  K  H  C  G  C  L  F  L  L  E  Q  I  K  K  S  I  *  C  *  A  F  P  I  R  D  G  N  N  K  V  *  W  R  L  L  Y  D  L  L  C  S  F  L  T  V  *  C  T  K  K  C  S  K  K  T  F  </second_frame>
            <third_frame>   V  L  G  R  N  R  K  R  R  Y  S  E  S  E  T  R  F  F  I  C  L  L  *  S  P  I  S  D  L  R  S  P  I  S  D  L  N  L  N  L  C  Q  W  R  T  P  A  V  S  L  F  F  Q  A  F  S  T  P  Q  H  L  L  F  L  L  *  L  P  K  P  L  L  F  Q  K  P  P  V  F  P  T  T  T  S  L  F  R  H  L  M  N  L  A  R  S  R  C  T  P  R  S  F  T  L  P  V  P  S  V  V  S  S  V  V  V  S  L  T  W  L  S  L  H  S  I  S  S  N  V  T  C  R :   L  T  L  R  N  T  R  A  Y  R  L  D  S  A  S  F  L  R  S  K  V  P  G  D  S  S  G  D  G  F  L  P  C  *  V  T  V  L  R  V  H  A  S  L   : D  C  L  M  D  C  R  N  L  L  D  L  K  V  P  W   : A  C  T  K  A  W  Y  L  F  G  D  V  R  F  H  :  I  Q  *  *  S  L  R  P  L  R  L  L  W  R  *  S  T  S  M  Q  S  Q  S  L  K  T  S  A  A  N  L  C  N  L  V  L  V  L  L  V  D  I  *  L  V  S  S  V  P  L  Y  P  I  L  L  T  I  L  S  R  S  S  T  M  R  R  V  Q  L  L  V  M :   P  *  R  R  *  E  Y  W  A  S  L  P  V  V  Y  L  Y  V  L  S  *  L  E  L  L  L  V  L  N  G  E  S  M  M  L  S  R  F  L  L  G   : C  Q  Q  L  V  V  L  L  L  L  Y  L  L  T  L  R  L  R  R  C  R  I  E  N  K  L  I  L  H  Q  V  *  K  *  T  S  P  D  *  T  I  N  I  D  C  R  C  S  L  S  A  L  S  *  *  A  S  W  R  V  F  F  R  S  T  I  F  T  I  L  Y  F  S  D  F  Q  I  F  G  E  G  E  F  P  *  N  L  S  I  A  D  V  F  F  C  *  N  R  *  K  N  Q  F  D  A  K  L  F  P  F  E  M  G  I  T  K  Y  S  G  G  C  Y  M  I  C  F  V  H  F  *  L  S  D  V  P  K  N  V  L  K  K  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28416" stop="28039"/>
                    <exon start="27793" stop="27660"/>
                    <exon start="27479" stop="27432"/>
                    <exon start="27349" stop="27306"/>
                    <exon start="26400" stop="26186"/>
                    <exon start="26058" stop="25934"/>
                    <exon start="25813" stop="25753"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKEVFGERDEILHLPSLISDLRSPISDLRSQSESVSMENSRRQSLLPSFLYSPTSSFSSLTPKTLAVPETTSVPNNNLIIPAPNEPGKIEMYSPQFYAACTFGGILSCGLTHMAVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGPRGFFRGWVPTLLGYSAQGACKFGLSDGLPKFVRSEGPMGLYKGLVPLWGRQIPYTMMKFASFETIVEMIYKHAVPKPKNECSKSMQLGISFAGGYIAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKIGVLGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGVAPAVPADSEVAKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="34036" PGL_stop="31844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34036" e_stop="33843"/>
            <exon e_start="32717" e_stop="31844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34036" e_stop="33843" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33842" i_stop="32718" i_length="1125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32717" e_stop="31844" e_length="874"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34036" stop="33843"/>
              <exon start="32717" stop="32068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34016" stop="33843"/>
              <exon start="32717" stop="32195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34016" stop="33843"/>
              <exon start="32717" stop="32247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32700" stop="32095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32549" stop="31844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAATGGCGAATGTCATATGAATTTAAGACCTGATTTGATTGCCGGCCGATCCCCAGAGGCTGCACTTACACCTAATGGCAAGCGCCAAGCAAGAGCTTTGGCTGTTTTTCTAAAGTCTCAAGGGATTCGTTTCAATTCTGTCTATACATCTCCCTTGGATCGGGCACGAGCTACTGCCCTCTCTGTTTGTCAG : GAAATAAACTTTTCGGAGGAACGGATACAATCCTCTGATGGTCTACTGGAAATGAGTCAGGGGCATTGGGAGGGATGCCACCGCTCGGATATTTTTACACCTGAAACAGCTAGCCTAATGGAAAAGTTCCAGCCTGATTTTTCAGCACCATCTGGAGAGTCACTGAGGCAGGTGGAATTTCGGATGGTACAATTCCTAAATGGAACTGTTATGACATTGCCTGACAAATTCAGATCTGATTTCTCTCCACCTGATCAGGGCTTCTCAAACCGTGGTTCTCATCCACTTGTCAATTCAGTTCATGACCGAGATGGGCCACCCTCTTTCTCGTCATCCCATTGGGATTTGCACCACAGGAATCGACAAGGACTTTCGAGGAAGAAGTCTGGAAAGAGTAGGCTTCAGATCGTGACAACAACTGGGGATCATGAGGCTGATGACGAGATGTCACCTCGAGAACCCATTAATCCTAACTCCATCCGAGATTTAAATGTGCAAAACAGTAGTAATGTTTCCCAATGCATTGGTATTTTCACACATTCAATCCCAATAAAGTGTCTTCTTACTGGCCTTCTTGGCTGCAGTTCAATGATGTCAAGTAAGATATGCATAGATGATTCTTCGGTGACAGTGCTACAACATTCCTGGAAAATGGGATGGCAGATCAAGAGAATGAACGATACTGCACATCTTAGGCTTCTCTAGTAAATTATTCCATTCAATAGCTGAGAAAAATTATCAAGAATTTTGGCTCAGCATTCACGGGATGTGTATTAGATTCAGGTCTCGGGCTTGTACAATTGCATGCTGATACTGAATTGTGCCTGTGGATTATTATTTCAATTTGTAGAATTTTTTATTAAATTTTTTTGAT</gDNA_template>
            <first_frame> V  M  A  N  V  I  *  I  *  D  L  I  *  L  P  A  D  P  Q  R  L  H  L  H  L  M  A  S  A  K  Q  E  L  W  L  F  F  *  S  L  K  G  F  V  S  I  L  S  I  H  L  P  W  I  G  H  E  L  L  P  S  L  F  V  R :   K  *  T  F  R  R  N  G  Y  N  P  L  M  V  Y  W  K  *  V  R  G  I  G  R  D  A  T  A  R  I  F  L  H  L  K  Q  L  A  *  W  K  S  S  S  L  I  F  Q  H  H  L  E  S  H  *  G  R  W  N  F  G  W  Y  N  S  *  M  E  L  L  *  H  C  L  T  N  S  D  L  I  S  L  H  L  I  R  A  S  Q  T  V  V  L  I  H  L  S  I  Q  F  M  T  E  M  G  H  P  L  S  R  H  P  I  G  I  C  T  T  G  I  D  K  D  F  R  G  R  S  L  E  R  V  G  F  R  S  *  Q  Q  L  G  I  M  R  L  M  T  R  C  H  L  E  N  P  L  I  L  T  P  S  E  I  *  M  C  K  T  V  V  M  F  P  N  A  L  V  F  S  H  I  Q  S  Q  *  S  V  F  L  L  A  F  L  A  A  V  Q  *  C  Q  V  R  Y  A  *  M  I  L  R  *  Q  C  Y  N  I  P  G  K  W  D  G  R  S  R  E  *  T  I  L  H  I  L  G  F  S  S  K  L  F  H  S  I  A  E  K  N  Y  Q  E  F  W  L  S  I  H  G  M  C  I  R  F  R  S  R  A  C  T  I  A  C  *  Y  *  I  V  P  V  D  Y  Y  F  N  L  *  N  F  L  L  N  F  F  D </first_frame>
            <second_frame>  *  W  R  M  S  Y  E  F  K  T  *  F  D  C  R  P  I  P  R  G  C  T  Y  T  *  W  Q  A  P  S  K  S  F  G  C  F  S  K  V  S  R  D  S  F  Q  F  C  L  Y  I  S  L  G  S  G  T  S  Y  C  P  L  C  L  S   : G  N  K  L  F  G  G  T  D  T  I  L  *  W  S  T  G  N  E  S  G  A  L  G  G  M  P  P  L  G  Y  F  Y  T  *  N  S  *  P  N  G  K  V  P  A  *  F  F  S  T  I  W  R  V  T  E  A  G  G  I  S  D  G  T  I  P  K  W  N  C  Y  D  I  A  *  Q  I  Q  I  *  F  L  S  T  *  S  G  L  L  K  P  W  F  S  S  T  C  Q  F  S  S  *  P  R  W  A  T  L  F  L  V  I  P  L  G  F  A  P  Q  E  S  T  R  T  F  E  E  E  V  W  K  E  *  A  S  D  R  D  N  N  W  G  S  *  G  *  *  R  D  V  T  S  R  T  H  *  S  *  L  H  P  R  F  K  C  A  K  Q  *  *  C  F  P  M  H  W  Y  F  H  T  F  N  P  N  K  V  S  S  Y  W  P  S  W  L  Q  F  N  D  V  K  *  D  M  H  R  *  F  F  G  D  S  A  T  T  F  L  E  N  G  M  A  D  Q  E  N  E  R  Y  C  T  S  *  A  S  L  V  N  Y  S  I  Q  *  L  R  K  I  I  K  N  F  G  S  A  F  T  G  C  V  L  D  S  G  L  G  L  V  Q  L  H  A  D  T  E  L  C  L  W  I  I  I  S  I  C  R  I  F  Y  *  I  F  L   </second_frame>
            <third_frame>   N  G  E  C  H  M  N  L  R  P  D  L  I  A  G  R  S  P  E  A  A  L  T  P  N  G  K  R  Q  A  R  A  L  A  V  F  L  K  S  Q  G  I  R  F  N  S  V  Y  T  S  P  L  D  R  A  R  A  T  A  L  S  V  C  Q  :  E  I  N  F  S  E  E  R  I  Q  S  S  D  G  L  L  E  M  S  Q  G  H  W  E  G  C  H  R  S  D  I  F  T  P  E  T  A  S  L  M  E  K  F  Q  P  D  F  S  A  P  S  G  E  S  L  R  Q  V  E  F  R  M  V  Q  F  L  N  G  T  V  M  T  L  P  D  K  F  R  S  D  F  S  P  P  D  Q  G  F  S  N  R  G  S  H  P  L  V  N  S  V  H  D  R  D  G  P  P  S  F  S  S  S  H  W  D  L  H  H  R  N  R  Q  G  L  S  R  K  K  S  G  K  S  R  L  Q  I  V  T  T  T  G  D  H  E  A  D  D  E  M  S  P  R  E  P  I  N  P  N  S  I  R  D  L  N  V  Q  N  S  S  N  V  S  Q  C  I  G  I  F  T  H  S  I  P  I  K  C  L  L  T  G  L  L  G  C  S  S  M  M  S  S  K  I  C  I  D  D  S  S  V  T  V  L  Q  H  S  W  K  M  G  W  Q  I  K  R  M  N  D  T  A  H  L  R  L  L  *  *  I  I  P  F  N  S  *  E  K  L  S  R  I  L  A  Q  H  S  R  D  V  Y  *  I  Q  V  S  G  L  Y  N  C  M  L  I  L  N  C  A  C  G  L  L  F  Q  F  V  E  F  F  I  K  F  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34034" stop="33843"/>
                    <exon start="32717" stop="32013"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGECHMNLRPDLIAGRSPEAALTPNGKRQARALAVFLKSQGIRFNSVYTSPLDRARATALSVCQEINFSEERIQSSDGLLEMSQGHWEGCHRSDIFTPETASLMEKFQPDFSAPSGESLRQVEFRMVQFLNGTVMTLPDKFRSDFSPPDQGFSNRGSHPLVNSVHDRDGPPSFSSSHWDLHHRNRQGLSRKKSGKSRLQIVTTTGDHEADDEMSPREPINPNSIRDLNVQNSSNVSQCIGIFTHSIPIKCLLTGLLGCSSMMSSKICIDDSSVTVLQHSWKMGWQIKRMNDTAHLRLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39146" PGL_stop="39420"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39146" e_stop="39420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="39146" e_stop="39420" e_length="275"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39146" stop="39420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGCAAGCACAGGTGGACGCTAGAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGTGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAATGTTAGATGGTT</gDNA_template>
            <first_frame> V  Q  A  Q  V  D  A  R  A  T  G  S  L  L  Q  L  S  G  H  Q  Y  S  S  G  V  W  *  V  L  M  L  S  R  M  L  P  F  Y  I  L  A  *  F  *  S  *  A  S  G  A  C  S  T  S  V  S  F  L  F  W  F  K  L  C  I  G  A  I  L  A  D  I  Q  V  I  L  N  E  L  F  L  S  V  A  Y  L  L  N  V  R  W   </first_frame>
            <second_frame>  C  K  H  R  W  T  L  E  L  Q  V  R  C  C  S  Y  P  D  I  S  I  H  P  E  F  G  R  S  S  C  F  R  G  C  Y  R  F  T  F  *  R  S  F  R  V  E  L  A  E  H  V  P  L  A  F  L  S  C  F  G  S  N  F  V  L  V  L  F  W  P  I  Y  K  *  Y  L  M  N  Y  F  F  Q  L  L  I  S  *  M  L  D  G  </second_frame>
            <third_frame>   A  S  T  G  G  R  *  S  Y  R  F  V  V  A  A  I  R  T  S  V  F  I  R  S  L  V  G  P  H  A  F  E  D  A  T  V  L  H  S  S  V  V  L  E  L  S  *  R  S  M  F  H  *  R  F  F  P  V  L  V  Q  T  L  Y  W  C  Y  F  G  R  Y  T  S  N  T  *  *  I  I  S  F  S  C  L  S  L  K  C  *  M  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0098J01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="51401" PGL_stop="52113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51401" e_stop="52113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="51401" e_stop="52113" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51401" stop="51887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51401" stop="51680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51402" stop="52092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51402" stop="52026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51402" stop="51877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51404" stop="52063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51861" stop="52098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51869" stop="52098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51908" stop="52113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACAATGGCGTGTACTGTGGATTTTCGGTGCCTGGACGAAGGATTCGGAGGAAAAACGTACAAACGAAAGAGAGCAGAGAAAGAGCAAGGTAATGGTATAGAAGCCATGGAAGTGGAGGAGATTCCAAGGAAGAGACAAGCGGTACCATCTGAGGAGGATCCAAACAAACCTGTATTGGGAAGGCCGACATACGACGGGGTGATTGCAGGGAGGGTATCGGGAAGGAATTGGAAACAGCCGCGTAAACACAGATCATCGGCAGCGAAGGTGAGCGTGAAGGGGAAGTCATTGGAGCAGAGGATGAAAGAGAAGGAGATTAAAAAGGCGTACAAGGAGAGAATCAATGAGCTCAAGGAAGTGATAAGACACAACAAGGTGGAGAAGCGGAAGCAGAGGGAGGAAAGAGAGAAAAAGAAGCAGGAAAACATTCTCAAGTCTGGCACCAAGGTTCAGAAGATCACCAATCCAAAAACCCTAAAAAAGATTGCCAAATCTAAGCAGAGGAAGCTCCTCAAGGTTGTTTCTGACCATCTTCTTAACCGTGGAAACAACAATTCTATCTCATAGATTAATAGTTAGTTTGCTCTTATTATGTTTTTGCTTGATCCATAGTAGTATTTACTGGTTATATTTGTTCCTTCTGAATTCATGTATTGTTTGTTATAACACAAATTTATGACGCACATTCGAGTTTAAGTTGCTTTTGTGAAA</gDNA_template>
            <first_frame> *  Q  W  R  V  L  W  I  F  G  A  W  T  K  D  S  E  E  K  R  T  N  E  R  E  Q  R  K  S  K  V  M  V  *  K  P  W  K  W  R  R  F  Q  G  R  D  K  R  Y  H  L  R  R  I  Q  T  N  L  Y  W  E  G  R  H  T  T  G  *  L  Q  G  G  Y  R  E  G  I  G  N  S  R  V  N  T  D  H  R  Q  R  R  *  A  *  R  G  S  H  W  S  R  G  *  K  R  R  R  L  K  R  R  T  R  R  E  S  M  S  S  R  K  *  *  D  T  T  R  W  R  S  G  S  R  G  R  K  E  R  K  R  S  R  K  T  F  S  S  L  A  P  R  F  R  R  S  P  I  Q  K  P  *  K  R  L  P  N  L  S  R  G  S  S  S  R  L  F  L  T  I  F  L  T  V  E  T  T  I  L  S  H  R  L  I  V  S  L  L  L  L  C  F  C  L  I  H  S  S  I  Y  W  L  Y  L  F  L  L  N  S  C  I  V  C  Y  N  T  N  L  *  R  T  F  E  F  K  L  L  L  *   </first_frame>
            <second_frame>  N  N  G  V  Y  C  G  F  S  V  P  G  R  R  I  R  R  K  N  V  Q  T  K  E  S  R  E  R  A  R  *  W  Y  R  S  H  G  S  G  G  D  S  K  E  E  T  S  G  T  I  *  G  G  S  K  Q  T  C  I  G  K  A  D  I  R  R  G  D  C  R  E  G  I  G  K  E  L  E  T  A  A  *  T  Q  I  I  G  S  E  G  E  R  E  G  E  V  I  G  A  E  D  E  R  E  G  D  *  K  G  V  Q  G  E  N  Q  *  A  Q  G  S  D  K  T  Q  Q  G  G  E  A  E  A  E  G  G  K  R  E  K  E  A  G  K  H  S  Q  V  W  H  Q  G  S  E  D  H  Q  S  K  N  P  K  K  D  C  Q  I  *  A  E  E  A  P  Q  G  C  F  *  P  S  S  *  P  W  K  Q  Q  F  Y  L  I  D  *  *  L  V  C  S  Y  Y  V  F  A  *  S  I  V  V  F  T  G  Y  I  C  S  F  *  I  H  V  L  F  V  I  T  Q  I  Y  D  A  H  S  S  L  S  C  F  C  E  </second_frame>
            <third_frame>   T  M  A  C  T  V  D  F  R  C  L  D  E  G  F  G  G  K  T  Y  K  R  K  R  A  E  K  E  Q  G  N  G  I  E  A  M  E  V  E  E  I  P  R  K  R  Q  A  V  P  S  E  E  D  P  N  K  P  V  L  G  R  P  T  Y  D  G  V  I  A  G  R  V  S  G  R  N  W  K  Q  P  R  K  H  R  S  S  A  A  K  V  S  V  K  G  K  S  L  E  Q  R  M  K  E  K  E  I  K  K  A  Y  K  E  R  I  N  E  L  K  E  V  I  R  H  N  K  V  E  K  R  K  Q  R  E  E  R  E  K  K  K  Q  E  N  I  L  K  S  G  T  K  V  Q  K  I  T  N  P  K  T  L  K  K  I  A  K  S  K  Q  R  K  L  L  K  V  V  S  D  H  L  L  N  R  G  N  N  N  S  I  S  *  I  N  S  *  F  A  L  I  M  F  L  L  D  P  *  *  Y  L  L  V  I  F  V  P  S  E  F  M  Y  C  L  L  *  H  K  F  M  T  H  I  R  V  *  V  A  F  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51403" stop="51969"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMACTVDFRCLDEGFGGKTYKRKRAEKEQGNGIEAMEVEEIPRKRQAVPSEEDPNKPVLGRPTYDGVIAGRVSGRNWKQPRKHRSSAAKVSVKGKSLEQRMKEKEIKKAYKERINELKEVIRHNKVEKRKQREEREKKKQENILKSGTKVQKITNPKTLKKIAKSKQRKLLKVVSDHLLNRGNNNSIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="67340" PGL_stop="52095"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67340" e_stop="67235"/>
            <exon e_start="67143" e_stop="67073"/>
            <exon e_start="66995" e_stop="66909"/>
            <exon e_start="66825" e_stop="66748"/>
            <exon e_start="66664" e_stop="66573"/>
            <exon e_start="66460" e_stop="66259"/>
            <exon e_start="64238" e_stop="64148"/>
            <exon e_start="57323" e_stop="57265"/>
            <exon e_start="53659" e_stop="53511"/>
            <exon e_start="53242" e_stop="53161"/>
            <exon e_start="53070" e_stop="52095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.907" e_score="0.991"/>
          <exon-intron don_prob="0.884" acc_prob="0.998" e_score="0.986"/>
          <exon-intron don_prob="0.845" acc_prob="0.918" e_score="0.977"/>
          <exon-intron don_prob="0.957" acc_prob="0.990" e_score="0.987"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.739" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="67340" e_stop="67235" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.907">
            <gDNA_intron_boundary i_start="67234" i_stop="67144" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="67143" e_stop="67073" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.884" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67072" i_stop="66996" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="66995" e_stop="66909" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.845" acc_prob="0.918">
            <gDNA_intron_boundary i_start="66908" i_stop="66826" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="66825" e_stop="66748" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.990">
            <gDNA_intron_boundary i_start="66747" i_stop="66665" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="66664" e_stop="66573" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66572" i_stop="66461" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66460" e_stop="66259" e_length="202"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="66258" i_stop="64239" i_length="2020"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64238" e_stop="64148" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="64147" i_stop="57324" i_length="6824"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="57323" e_stop="57265" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.955" acc_prob="0.739">
            <gDNA_intron_boundary i_start="57264" i_stop="53660" i_length="3605"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53659" e_stop="53511" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="53510" i_stop="53243" i_length="268"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53242" e_stop="53161" e_length="82"/>
          </exon>
          <intron i_serial="10" don_prob="0.969" acc_prob="0.928">
            <gDNA_intron_boundary i_start="53160" i_stop="53071" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="0.991">
            <gDNA_exon_boundary e_start="53070" e_stop="52095" e_length="976"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67340" stop="67235"/>
              <exon start="67143" stop="67073"/>
              <exon start="66995" stop="66909"/>
              <exon start="66825" stop="66748"/>
              <exon start="66664" stop="66573"/>
              <exon start="66460" stop="66259"/>
              <exon start="64238" stop="64148"/>
              <exon start="57323" stop="57265"/>
              <exon start="53659" stop="53511"/>
              <exon start="53242" stop="53161"/>
              <exon start="53070" stop="52166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67330" stop="67235"/>
              <exon start="67143" stop="67073"/>
              <exon start="66995" stop="66909"/>
              <exon start="66825" stop="66748"/>
              <exon start="66664" stop="66573"/>
              <exon start="66460" stop="66389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67329" stop="67235"/>
              <exon start="67143" stop="67073"/>
              <exon start="66995" stop="66909"/>
              <exon start="66825" stop="66748"/>
              <exon start="66664" stop="66573"/>
              <exon start="66460" stop="66378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67308" stop="67235"/>
              <exon start="67143" stop="67073"/>
              <exon start="66995" stop="66909"/>
              <exon start="66825" stop="66748"/>
              <exon start="66664" stop="66573"/>
              <exon start="66460" stop="66293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66603" stop="66573"/>
              <exon start="66460" stop="66259"/>
              <exon start="64238" stop="64148"/>
              <exon start="57323" stop="57265"/>
              <exon start="53659" stop="53511"/>
              <exon start="53242" stop="53228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64182" stop="64148"/>
              <exon start="57323" stop="57265"/>
              <exon start="53659" stop="53511"/>
              <exon start="53242" stop="53161"/>
              <exon start="53070" stop="52643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64182" stop="64148"/>
              <exon start="57323" stop="57265"/>
              <exon start="53659" stop="53511"/>
              <exon start="53242" stop="53161"/>
              <exon start="53070" stop="52869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52942" stop="52277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691136" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52852" stop="52225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52800" stop="52095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52625" stop="52166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGACACGACCAAGGTTCAGCAGGAAACCAGCTCTTGTTCGTCTTCTCTCTGTTGCTGCTCTCTTCTCCATTATACTAATCGCCATTCAGTCCTCTTTCTTCACTG : GTAGTCGGGCTCCCGTTAATTTGGATATTCCGATCTTGTCCCACTTCCAGTCTAACCTTCAGCAATGCGTC : GCTAATCGAGGGCTGGGATTGACTGCTCATATAATTGATCATTGCAATGTCATTCTCAAGTTTCCCCAAGGAACTAATAGCACTTGG : TATAATGAGCAGTTCAAGATCTTTGAACCATTGGAGTACAAGTACGACGTTTGCGAAACAATACTTCTGTGGGAGCAG : TACCGTAACATGACGACAGTGTTGACAAGAGAATATTTGGATTCTCGGCCTGATGGATGGTTTGACTATGCAGCAAAAAGGATCGCACAGCT : AGGAGCAGACAAATGTTACAATCAGACTCTTTGCGAAGAACATCTCAATCTAACTTTACCAGCTAAGCCCCCGTTTCACCCTCGACAATTCAGAAGATGTGCAGTCGTTGGCAATTCTGGAGACCTCTTGAAGACGCAATTTGGAGAGGAAATTGACAGTCATGATGCAGTTATACGAGACAATGAGGCTCCTGTTAATGAG : AGATACGCCAAGCATGTTGGCCTGAAGAGAGATTTTCGCTTAGTTGTGCGAGGTGCTGCCGGAAACATGATTAAAATTCTCAACGGTTCTG : ATGATGAGGTGCTTATAATTAAAAGTGTCATCCATAGAGACTTCAATGCAATGATAAAG : AAAATCCGGAATCCAGTCTATCTGTTCCAAGGTATCGTATTACGCAGAGGTGCGAAAGGAACTGGGATGAAATCAATAGAATTAGCACTTTCCATGTGCGACATTGTTGACATCTATGGTTTCACTGTCGATCCTGGTTACACAGAATG : GACTCGATACTTTTCCACACCAAGGAAAGGGCACAACCCACTCCAAGGAAGGGCTTATTATCAACTCTTAGAATGCCTTGGA : GTCATACGAATCCATTCTCCTATGCGAGCAAAGAGAAAGCAAGACTGGTCTGATGTGCCTAGTCGAGAAATGATAAACAACGCTCACAGAGCTGCATTGCATTTGAAAAAGAAGCAAGCTGGGCAAGAGGGGGGATTGGGACGATTTGTTAACTGTAAAGTATGGGGCAAATCAGGTCCCTATGGCACTGGGCCTGTATCTGGTTCCACAGATATGACAGATACCAGGAAGGAGTCAAATTACAATCGATGGGAAATCATGCCTTTTGAGAGCTTGAGGGAGGAAGCACGGAAGCACTATATGCAGATGGAAGGTGTGTCTTTGTACAAGATGGATGGGAATAAGCTGGATGATCTAGTCTGCGTGAAACATCCCCTGAAATCCGAGGCATGAAACAATGGCTTGATATGATGGATCCATTTGAGTTGAACCTAATTAGTATTTTACATGCACAAATACAAGGGAATCAAGAGTCGTGTTCAACACACCAAGCAGCTTCCTCTTGGAGTGTAAACTAGTAACAACCACCAGAGTGAACTCAGATCTTCGGAAGTGCGCTGCGAAATTGTCTGATTACCTGGTGATCTGAATTACTGGAGGAACGAGGAAAGAAGGGACCAGTGTCCTTACTCTTTTCTTAATTTTGTAAGCAGAGAAATCTCATGCTCCATATTTTACCTGATTTTGTTATTAGGGTTGCTTTTATTCTTCTCACTGTGAATTTGTGGTTTTGAACTGTCCTATCCAGTATAGTCAAAAGGGAAGGGTGAAGTAGGGATTGCAGATAGTGCACGGCAAACACCATAAACCAGCAAATACTGTCCTGTATAGCACGGTTTTTTTAAAACGCTCTTCCCCTGCAACTCCAACATTCTTTTGCTTCTAACATTTATTTTCATTTTTCATTGATGAATTATGTACGTTATACATTTTGAATATGAATTATTGAGATTGTACTTTCACAAAAGCAACTTAA</gDNA_template>
            <first_frame> M  T  R  P  R  F  S  R  K  P  A  L  V  R  L  L  S  V  A  A  L  F  S  I  I  L  I  A  I  Q  S  S  F  F  T   : G  S  R  A  P  V  N  L  D  I  P  I  L  S  H  F  Q  S  N  L  Q  Q  C  V  :  A  N  R  G  L  G  L  T  A  H  I  I  D  H  C  N  V  I  L  K  F  P  Q  G  T  N  S  T  W  :  Y  N  E  Q  F  K  I  F  E  P  L  E  Y  K  Y  D  V  C  E  T  I  L  L  W  E  Q  :  Y  R  N  M  T  T  V  L  T  R  E  Y  L  D  S  R  P  D  G  W  F  D  Y  A  A  K  R  I  A  Q  L :   G  A  D  K  C  Y  N  Q  T  L  C  E  E  H  L  N  L  T  L  P  A  K  P  P  F  H  P  R  Q  F  R  R  C  A  V  V  G  N  S  G  D  L  L  K  T  Q  F  G  E  E  I  D  S  H  D  A  V  I  R  D  N  E  A  P  V  N  E  :  R  Y  A  K  H  V  G  L  K  R  D  F  R  L  V  V  R  G  A  A  G  N  M  I  K  I  L  N  G  S   : D  D  E  V  L  I  I  K  S  V  I  H  R  D  F  N  A  M  I  K  :  K  I  R  N  P  V  Y  L  F  Q  G  I  V  L  R  R  G  A  K  G  T  G  M  K  S  I  E  L  A  L  S  M  C  D  I  V  D  I  Y  G  F  T  V  D  P  G  Y  T  E  W :   T  R  Y  F  S  T  P  R  K  G  H  N  P  L  Q  G  R  A  Y  Y  Q  L  L  E  C  L  G  :  V  I  R  I  H  S  P  M  R  A  K  R  K  Q  D  W  S  D  V  P  S  R  E  M  I  N  N  A  H  R  A  A  L  H  L  K  K  K  Q  A  G  Q  E  G  G  L  G  R  F  V  N  C  K  V  W  G  K  S  G  P  Y  G  T  G  P  V  S  G  S  T  D  M  T  D  T  R  K  E  S  N  Y  N  R  W  E  I  M  P  F  E  S  L  R  E  E  A  R  K  H  Y  M  Q  M  E  G  V  S  L  Y  K  M  D  G  N  K  L  D  D  L  V  C  V  K  H  P  L  K  S  E  A  *  N  N  G  L  I  *  W  I  H  L  S  *  T  *  L  V  F  Y  M  H  K  Y  K  G  I  K  S  R  V  Q  H  T  K  Q  L  P  L  G  V  *  T  S  N  N  H  Q  S  E  L  R  S  S  E  V  R  C  E  I  V  *  L  P  G  D  L  N  Y  W  R  N  E  E  R  R  D  Q  C  P  Y  S  F  L  N  F  V  S  R  E  I  S  C  S  I  F  Y  L  I  L  L  L  G  L  L  L  F  F  S  L  *  I  C  G  F  E  L  S  Y  P  V  *  S  K  G  K  G  E  V  G  I  A  D  S  A  R  Q  T  P  *  T  S  K  Y  C  P  V  *  H  G  F  F  K  T  L  F  P  C  N  S  N  I  L  L  L  L  T  F  I  F  I  F  H  *  *  I  M  Y  V  I  H  F  E  Y  E  L  L  R  L  Y  F  H  K  S  N  L  </first_frame>
            <second_frame>  *  H  D  Q  G  S  A  G  N  Q  L  L  F  V  F  S  L  L  L  L  S  S  P  L  Y  *  S  P  F  S  P  L  S  S  L  :  V  V  G  L  P  L  I  W  I  F  R  S  C  P  T  S  S  L  T  F  S  N  A  S :   L  I  E  G  W  D  *  L  L  I  *  L  I  I  A  M  S  F  S  S  F  P  K  E  L  I  A  L  G :   I  M  S  S  S  R  S  L  N  H  W  S  T  S  T  T  F  A  K  Q  Y  F  C  G  S  S :   T  V  T  *  R  Q  C  *  Q  E  N  I  W  I  L  G  L  M  D  G  L  T  M  Q  Q  K  G  S  H  S   : *  E  Q  T  N  V  T  I  R  L  F  A  K  N  I  S  I  *  L  Y  Q  L  S  P  R  F  T  L  D  N  S  E  D  V  Q  S  L  A  I  L  E  T  S  *  R  R  N  L  E  R  K  L  T  V  M  M  Q  L  Y  E  T  M  R  L  L  L  M  R :   D  T  P  S  M  L  A  *  R  E  I  F  A  *  L  C  E  V  L  P  E  T  *  L  K  F  S  T  V  L  :  M  M  R  C  L  *  L  K  V  S  S  I  E  T  S  M  Q  *  *  R :   K  S  G  I  Q  S  I  C  S  K  V  S  Y  Y  A  E  V  R  K  E  L  G  *  N  Q  *  N  *  H  F  P  C  A  T  L  L  T  S  M  V  S  L  S  I  L  V  T  Q  N   : G  L  D  T  F  P  H  Q  G  K  G  T  T  H  S  K  E  G  L  I  I  N  S  *  N  A  L  E :   S  Y  E  S  I  L  L  C  E  Q  R  E  S  K  T  G  L  M  C  L  V  E  K  *  *  T  T  L  T  E  L  H  C  I  *  K  R  S  K  L  G  K  R  G  D  W  D  D  L  L  T  V  K  Y  G  A  N  Q  V  P  M  A  L  G  L  Y  L  V  P  Q  I  *  Q  I  P  G  R  S  Q  I  T  I  D  G  K  S  C  L  L  R  A  *  G  R  K  H  G  S  T  I  C  R  W  K  V  C  L  C  T  R  W  M  G  I  S  W  M  I  *  S  A  *  N  I  P  *  N  P  R  H  E  T  M  A  *  Y  D  G  S  I  *  V  E  P  N  *  Y  F  T  C  T  N  T  R  E  S  R  V  V  F  N  T  P  S  S  F  L  L  E  C  K  L  V  T  T  T  R  V  N  S  D  L  R  K  C  A  A  K  L  S  D  Y  L  V  I  *  I  T  G  G  T  R  K  E  G  T  S  V  L  T  L  F  L  I  L  *  A  E  K  S  H  A  P  Y  F  T  *  F  C  Y  *  G  C  F  Y  S  S  H  C  E  F  V  V  L  N  C  P  I  Q  Y  S  Q  K  G  R  V  K  *  G  L  Q  I  V  H  G  K  H  H  K  P  A  N  T  V  L  Y  S  T  V  F  L  K  R  S  S  P  A  T  P  T  F  F  C  F  *  H  L  F  S  F  F  I  D  E  L  C  T  L  Y  I  L  N  M  N  Y  *  D  C  T  F  T  K  A  T  * </second_frame>
            <third_frame>   D  T  T  K  V  Q  Q  E  T  S  S  C  S  S  S  L  C  C  C  S  L  L  H  Y  T  N  R  H  S  V  L  F  L  H  W :   *  S  G  S  R  *  F  G  Y  S  D  L  V  P  L  P  V  *  P  S  A  M  R   : R  *  S  R  A  G  I  D  C  S  Y  N  *  S  L  Q  C  H  S  Q  V  S  P  R  N  *  *  H  L   : V  *  *  A  V  Q  D  L  *  T  I  G  V  Q  V  R  R  L  R  N  N  T  S  V  G  A   : V  P  *  H  D  D  S  V  D  K  R  I  F  G  F  S  A  *  W  M  V  *  L  C  S  K  K  D  R  T  A  :  R  S  R  Q  M  L  Q  S  D  S  L  R  R  T  S  Q  S  N  F  T  S  *  A  P  V  S  P  S  T  I  Q  K  M  C  S  R  W  Q  F  W  R  P  L  E  D  A  I  W  R  G  N  *  Q  S  *  C  S  Y  T  R  Q  *  G  S  C  *  *   : E  I  R  Q  A  C  W  P  E  E  R  F  S  L  S  C  A  R  C  C  R  K  H  D  *  N  S  Q  R  F  * :   *  *  G  A  Y  N  *  K  C  H  P  *  R  L  Q  C  N  D  K   : E  N  P  E  S  S  L  S  V  P  R  Y  R  I  T  Q  R  C  E  R  N  W  D  E  I  N  R  I  S  T  F  H  V  R  H  C  *  H  L  W  F  H  C  R  S  W  L  H  R  M  :  D  S  I  L  F  H  T  K  E  R  A  Q  P  T  P  R  K  G  L  L  S  T  L  R  M  P  W   : S  H  T  N  P  F  S  Y  A  S  K  E  K  A  R  L  V  *  C  A  *  S  R  N  D  K  Q  R  S  Q  S  C  I  A  F  E  K  E  A  S  W  A  R  G  G  I  G  T  I  C  *  L  *  S  M  G  Q  I  R  S  L  W  H  W  A  C  I  W  F  H  R  Y  D  R  Y  Q  E  G  V  K  L  Q  S  M  G  N  H  A  F  *  E  L  E  G  G  S  T  E  A  L  Y  A  D  G  R  C  V  F  V  Q  D  G  W  E  *  A  G  *  S  S  L  R  E  T  S  P  E  I  R  G  M  K  Q  W  L  D  M  M  D  P  F  E  L  N  L  I  S  I  L  H  A  Q  I  Q  G  N  Q  E  S  C  S  T  H  Q  A  A  S  S  W  S  V  N  *  *  Q  P  P  E  *  T  Q  I  F  G  S  A  L  R  N  C  L  I  T  W  *  S  E  L  L  E  E  R  G  K  K  G  P  V  S  L  L  F  S  *  F  C  K  Q  R  N  L  M  L  H  I  L  P  D  F  V  I  R  V  A  F  I  L  L  T  V  N  L  W  F  *  T  V  L  S  S  I  V  K  R  E  G  *  S  R  D  C  R  *  C  T  A  N  T  I  N  Q  Q  I  L  S  C  I  A  R  F  F  *  N  A  L  P  L  Q  L  Q  H  S  F  A  S  N  I  Y  F  H  F  S  L  M  N  Y  V  R  Y  T  F  *  I  *  I  I  E  I  V  L  S  Q  K  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67340" stop="67235"/>
                    <exon start="67143" stop="67073"/>
                    <exon start="66995" stop="66909"/>
                    <exon start="66825" stop="66748"/>
                    <exon start="66664" stop="66573"/>
                    <exon start="66460" stop="66259"/>
                    <exon start="64238" stop="64148"/>
                    <exon start="57323" stop="57265"/>
                    <exon start="53659" stop="53511"/>
                    <exon start="53242" stop="53161"/>
                    <exon start="53070" stop="52678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1407</number_coding_nucleotides>
                  <number_encoded_amino_acids>469</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTRPRFSRKPALVRLLSVAALFSIILIAIQSSFFTGSRAPVNLDIPILSHFQSNLQQCVANRGLGLTAHIIDHCNVILKFPQGTNSTWYNEQFKIFEPLEYKYDVCETILLWEQYRNMTTVLTREYLDSRPDGWFDYAAKRIAQLGADKCYNQTLCEEHLNLTLPAKPPFHPRQFRRCAVVGNSGDLLKTQFGEEIDSHDAVIRDNEAPVNERYAKHVGLKRDFRLVVRGAAGNMIKILNGSDDEVLIIKSVIHRDFNAMIKKIRNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRAKRKQDWSDVPSREMINNAHRAALHLKKKQAGQEGGLGRFVNCKVWGKSGPYGTGPVSGSTDMTDTRKESNYNRWEIMPFESLREEARKHYMQMEGVSLYKMDGNKLDDLVCVKHPLKSEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="66938" PGL_stop="67440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66938" e_stop="67440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66938" e_stop="67440" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66938" stop="67440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGAATGACATTGCAATGATCAATTATATGAGCAGTCAATCCCAGCCCTCGATTAGCCTGTAAAGCAGAAATTCGAATAAACAACTAACATGTGCAGTTTTCAACAAAATATAGGAGATCCAGAAAATAATTACGACGCATTGCTGAAGGTTAGACTGGAAGTGGGACAAGATCGGAATATCCAAATTAACGGGAGCCCGACTACCTGGATGCATCAAATTCATTCAAAATAGTAAATTAGCGAAGAGGATTTTCAAACAATTAGGGTTAAGGAAAAGAAGATATGTAGTACCAACCAGTGAAGAAAGAGGACTGAATGGCGATTAGTATAATGGAGAAGAGAGCAGCAACAGAGAGAAGACGAACAAGAGCTGGTTTCCTGCTGAACCTTGGTCGTGTCATTTGGGATCAAGATCTCCTCCTCAAACTTGTTTTCCCTATGTAAATAACAATCAGATTATATACTTAGTTTAGCACGTGTCCCACACACATTTCATTTTTA</gDNA_template>
            <first_frame> *  E  *  H  C  N  D  Q  L  Y  E  Q  S  I  P  A  L  D  *  P  V  K  Q  K  F  E  *  T  T  N  M  C  S  F  Q  Q  N  I  G  D  P  E  N  N  Y  D  A  L  L  K  V  R  L  E  V  G  Q  D  R  N  I  Q  I  N  G  S  P  T  T  W  M  H  Q  I  H  S  K  *  *  I  S  E  E  D  F  Q  T  I  R  V  K  E  K  K  I  C  S  T  N  Q  *  R  K  R  T  E  W  R  L  V  *  W  R  R  E  Q  Q  Q  R  E  D  E  Q  E  L  V  S  C  *  T  L  V  V  S  F  G  I  K  I  S  S  S  N  L  F  S  L  C  K  *  Q  S  D  Y  I  L  S  L  A  R  V  P  H  T  F  H  F   </first_frame>
            <second_frame>  E  N  D  I  A  M  I  N  Y  M  S  S  Q  S  Q  P  S  I  S  L  *  S  R  N  S  N  K  Q  L  T  C  A  V  F  N  K  I  *  E  I  Q  K  I  I  T  T  H  C  *  R  L  D  W  K  W  D  K  I  G  I  S  K  L  T  G  A  R  L  P  G  C  I  K  F  I  Q  N  S  K  L  A  K  R  I  F  K  Q  L  G  L  R  K  R  R  Y  V  V  P  T  S  E  E  R  G  L  N  G  D  *  Y  N  G  E  E  S  S  N  R  E  K  T  N  K  S  W  F  P  A  E  P  W  S  C  H  L  G  S  R  S  P  P  Q  T  C  F  P  Y  V  N  N  N  Q  I  I  Y  L  V  *  H  V  S  H  T  H  F  I  F  </second_frame>
            <third_frame>   R  M  T  L  Q  *  S  I  I  *  A  V  N  P  S  P  R  L  A  C  K  A  E  I  R  I  N  N  *  H  V  Q  F  S  T  K  Y  R  R  S  R  K  *  L  R  R  I  A  E  G  *  T  G  S  G  T  R  S  E  Y  P  N  *  R  E  P  D  Y  L  D  A  S  N  S  F  K  I  V  N  *  R  R  G  F  S  N  N  *  G  *  G  K  E  D  M  *  Y  Q  P  V  K  K  E  D  *  M  A  I  S  I  M  E  K  R  A  A  T  E  R  R  R  T  R  A  G  F  L  L  N  L  G  R  V  I  W  D  Q  D  L  L  L  K  L  V  F  P  M  *  I  T  I  R  L  Y  T  *  F  S  T  C  P  T  H  I  S  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0098J01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="81716" PGL_stop="67800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81716" e_stop="81541"/>
            <exon e_start="81439" e_stop="81393"/>
            <exon e_start="81313" e_stop="80066"/>
            <exon e_start="75791" e_stop="75703"/>
            <exon e_start="73668" e_stop="73566"/>
            <exon e_start="73474" e_stop="73370"/>
            <exon e_start="71905" e_stop="71788"/>
            <exon e_start="68409" e_stop="68251"/>
            <exon e_start="68102" e_stop="67800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.590" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.701" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81716" e_stop="81541" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.590" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81540" i_stop="81440" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81439" e_stop="81393" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="81392" i_stop="81314" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81313" e_stop="80066" e_length="1248"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80065" i_stop="75792" i_length="4274"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75791" e_stop="75703" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.701">
            <gDNA_intron_boundary i_start="75702" i_stop="73669" i_length="2034"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73668" e_stop="73566" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.968" acc_prob="0.991">
            <gDNA_intron_boundary i_start="73565" i_stop="73475" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73474" e_stop="73370" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.959">
            <gDNA_intron_boundary i_start="73369" i_stop="71906" i_length="1464"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71905" e_stop="71788" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.875">
            <gDNA_intron_boundary i_start="71787" i_stop="68410" i_length="3378"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="68409" e_stop="68251" e_length="159"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68250" i_stop="68103" i_length="148"/>
          </intron>
          <exon e_serial="9" e_score="0.986">
            <gDNA_exon_boundary e_start="68102" e_stop="67800" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81716" stop="81541"/>
              <exon start="81439" stop="81393"/>
              <exon start="81313" stop="80960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81706" stop="81541"/>
              <exon start="81439" stop="81393"/>
              <exon start="81313" stop="80944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81649" stop="81541"/>
              <exon start="81439" stop="81393"/>
              <exon start="81313" stop="80880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81591" stop="81541"/>
              <exon start="81439" stop="81393"/>
              <exon start="81313" stop="80884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81155" stop="80603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81150" stop="80537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80707" stop="80262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80646" stop="80260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80261" stop="80066"/>
              <exon start="75791" stop="75703"/>
              <exon start="73668" stop="73566"/>
              <exon start="73474" stop="73394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80160" stop="80066"/>
              <exon start="75791" stop="75703"/>
              <exon start="73668" stop="73566"/>
              <exon start="73474" stop="73370"/>
              <exon start="71905" stop="71788"/>
              <exon start="68409" stop="68251"/>
              <exon start="68102" stop="67884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80124" stop="80066"/>
              <exon start="75791" stop="75703"/>
              <exon start="73668" stop="73566"/>
              <exon start="73474" stop="73370"/>
              <exon start="71905" stop="71788"/>
              <exon start="68409" stop="68269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73655" stop="73566"/>
              <exon start="73474" stop="73370"/>
              <exon start="71905" stop="71788"/>
              <exon start="68409" stop="68251"/>
              <exon start="68102" stop="68012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68001" stop="67800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68001" stop="67800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68001" stop="67800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCAACCCCCTTTGTCTAATCTAATCTCCCAGGAGGAATTTCATGTCCATCTTGCCCTCCCATAGCGACAATCATACAACCTCCTCCTCCTCTTCTTCTTCTTCTCCAAACCCTAACTCTAATCATGGATCCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTCTCAG : GAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAG : GTGAACAACTCCGGTAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTTCAAGAAGAACCCAGATGGTTAGTGGAAACCACTTGCTCAATTTTCAGTATGATCCCATTTCTCGTCCACAATCTAGGTTGCCTCCTCCTAGGAGATACGTCAAGAGGAAGCCTTACAACAAAGACTTGTTTCTTCAAGCAAATTACAAGTTTGTTCTGTTGGATTCAGGCAATTACACGCCTGACTCGATGGATCCAGACAAAATGTTACAGTGGGAGGATATTGTTTGTGTGAGATATTCCACTCCATTTCATGTGCAATGCCCCATATGCTTAGAGGATCCTCTTTGTCCTCAGATAACTTCGTGTGGTCATATCTTCTGTTTTCCCTGTGTTATGCAATATTTTATGATCTCCGAAGAAGATGACCATAAAAATAATTTCAAGAAGAAATGCCCTTTGTGTTTTATGATGATATCTTCACAGGATTTGTACACCATTCAAATTGAGAACGTTAAACAACATCGTGTCAGTGATGTAATTGAATTTTTACTCTTAACCCGTCACAAGGATTCATTTACTTTATCTTTGAAAAATAATGATGGCATTGTTGGTAGAGAGGAGGTTCAAAAGTTATTCTCTAAATTCATATTTACGTCCGATGTCGACCTTTCTGTTCGAGAGGCAATGTCTGATCTTGATAGTTGGTTAGCTAGAGCTGATTCAGGCTTAGTTGATGACTTGGAGAAACTTCCCTTTGTCTGTGCTGCAAGGGAACTATTGGAGCAGAGGAAGACGTACTGGAATAGGCAACATATTGCTGTTCAAAATAGCAAATCTGACGAAGATAATCGTTTGGAGAAGTGCTCTTATAGTTCTCAGCGACTAGAAAGTGTTCAGGTCCATTCTGCTGGACAATCTACTCATGTAATGCCATACAGTAATCCAGCTGATAAACCAATATTGCAGGAGAAGTCAACTCTCAATAAGGTAGTGAGGGACTCTCATCTTATTCAAGCTTCAGATGTTGAATCAATAGAAGAGCGTGTTGGATCTTCATTGTCCTTATATGGCAATGACAAGAGCCTACAGAAAGACACAAGTGGCATTACTGACAGAGAAGAGATCAGTTCCTACAGTTTCTACCAG : GCAGTTGATGGTCAGCACCTTATCCTCCATCCACTGAACATGAAGTGCCTTCTGCATTACTACGGTGGCTACGGTGGTCTTCCTAACAG : AATCAGTGGAAAGATTTTACAAATGGAGTCCGTGACGCAATCGGAGGCCATGAGAAGGCGTTACCGCTTCCTAAGTCATTTTTCTTTGACAACAACATTTCAG : CTTTGTGAAATTGATCTCAGCAAGATAATGCCCATGGATGCACTTTCTCCCTTTATGGAGGAAATCAGAAGTAGGGAAAAACAAAGGACGTGGCTAGCTAGGAAG : GAACGGCGTGAACAAGTTAAAGCTGAAGCCATTGGCATGTACTTAGAGCCTTTGCCTTTTAGCTTTTCAGAACCTTCTTTCACAGAACAACCTACTTTCACTAGCAATGACTTCGAAG : CTTTGGGAAGTACGAGTGTTACTGTAACATCATCAAGCTCCCCTGTGCCTGGAGGCAGGCAACTGTTCTCCAATGTTGCAAGGCTTGGTTTTGCTGCTGGATGTGATCCTCCAGCGCTGAAAATGGATGAGTCTGCACGTGGTTCTTCTGTTGCAGCTG : GAACGAGGAGTCCTGGAATCCTGTCCTTTGCAAATGTAACCTCCAAAGCAAAAGCTGTTGAAGGTCCCAATGCTTCTAAGTCAAATGATGCAGGGAAGAGGGGAAAGAAGCCAAATCGGATCCTAATGTCAACTTCTGGTGGTAGACGTTACTGAATTTTGAAGGGACGTGATAAGGAATAATCTGTCTGTATATTTAAGAGATGTTTTGCCTTTTATTAGCAACTGAGATTTGTTTGTTGTTACTCACCTAGTAGGTTTGAGCAATGGTTATTTTTGTGAAATTGTTTTGGGAAAAACTGTT</gDNA_template>
            <first_frame> N  Q  P  P  L  S  N  L  I  S  Q  E  E  F  H  V  H  L  A  L  P  *  R  Q  S  Y  N  L  L  L  L  F  F  F  F  S  K  P  *  L  *  S  W  I  Q  I  Q  T  T  A  A  A  A  T  R  Q  L  L  R :   K  H  G  Y  R  C  I  Y  F  W  W  I  L  Q  K   : G  E  Q  L  R  *  Q  S  R  K  F  T  T  S  *  Q  *  Y  N  L  T  A  R  T  R  K  T  S  *  D  Q  *  S  F  Q  R  K  R  P  V  W  L  *  Q  S  P  R  S  C  Y  P  L  S  F  K  K  N  P  D  G  *  W  K  P  L  A  Q  F  S  V  *  S  H  F  S  S  T  I  *  V  A  S  S  *  E  I  R  Q  E  E  A  L  Q  Q  R  L  V  S  S  S  K  L  Q  V  C  S  V  G  F  R  Q  L  H  A  *  L  D  G  S  R  Q  N  V  T  V  G  G  Y  C  L  C  E  I  F  H  S  I  S  C  A  M  P  H  M  L  R  G  S  S  L  S  S  D  N  F  V  W  S  Y  L  L  F  S  L  C  Y  A  I  F  Y  D  L  R  R  R  *  P  *  K  *  F  Q  E  E  M  P  F  V  F  Y  D  D  I  F  T  G  F  V  H  H  S  N  *  E  R  *  T  T  S  C  Q  *  C  N  *  I  F  T  L  N  P  S  Q  G  F  I  Y  F  I  F  E  K  *  *  W  H  C  W  *  R  G  G  S  K  V  I  L  *  I  H  I  Y  V  R  C  R  P  F  C  S  R  G  N  V  *  S  *  *  L  V  S  *  S  *  F  R  L  S  *  *  L  G  E  T  S  L  C  L  C  C  K  G  T  I  G  A  E  E  D  V  L  E  *  A  T  Y  C  C  S  K  *  Q  I  *  R  R  *  S  F  G  E  V  L  L  *  F  S  A  T  R  K  C  S  G  P  F  C  W  T  I  Y  S  C  N  A  I  Q  *  S  S  *  *  T  N  I  A  G  E  V  N  S  Q  *  G  S  E  G  L  S  S  Y  S  S  F  R  C  *  I  N  R  R  A  C  W  I  F  I  V  L  I  W  Q  *  Q  E  P  T  E  R  H  K  W  H  Y  *  Q  R  R  D  Q  F  L  Q  F  L  P   : G  S  *  W  S  A  P  Y  P  P  S  T  E  H  E  V  P  S  A  L  L  R  W  L  R  W  S  S  *  Q  :  N  Q  W  K  D  F  T  N  G  V  R  D  A  I  G  G  H  E  K  A  L  P  L  P  K  S  F  F  F  D  N  N  I  S   : A  L  *  N  *  S  Q  Q  D  N  A  H  G  C  T  F  S  L  Y  G  G  N  Q  K  *  G  K  T  K  D  V  A  S  *  E   : G  T  A  *  T  S  *  S  *  S  H  W  H  V  L  R  A  F  A  F  *  L  F  R  T  F  F  H  R  T  T  Y  F  H  *  Q  *  L  R  S :   F  G  K  Y  E  C  Y  C  N  I  I  K  L  P  C  A  W  R  Q  A  T  V  L  Q  C  C  K  A  W  F  C  C  W  M  *  S  S  S  A  E  N  G  *  V  C  T  W  F  F  C  C  S  W :   N  E  E  S  W  N  P  V  L  C  K  C  N  L  Q  S  K  S  C  *  R  S  Q  C  F  *  V  K  *  C  R  E  E  G  K  E  A  K  S  D  P  N  V  N  F  W  W  *  T  L  L  N  F  E  G  T  *  *  G  I  I  C  L  Y  I  *  E  M  F  C  L  L  L  A  T  E  I  C  L  L  L  L  T  *  *  V  *  A  M  V  I  F  V  K  L  F  W  E  K  L   </first_frame>
            <second_frame>  T  N  P  L  C  L  I  *  S  P  R  R  N  F  M  S  I  L  P  S  H  S  D  N  H  T  T  S  S  S  S  S  S  S  S  P  N  P  N  S  N  H  G  S  K  S  K  Q  Q  Q  Q  Q  Q  P  D  N  F  S   : G  N  M  A  T  A  A  S  T  S  G  G  S  S  K  K  :  V  N  N  S  G  S  S  R  E  S  S  R  H  H  N  S  D  I  I  S  L  H  G  Q  G  K  P  A  R  T  N  D  P  S  S  G  R  D  Q  F  G  F  N  S  P  Q  G  V  V  T  R  S  A  S  R  R  T  Q  M  V  S  G  N  H  L  L  N  F  Q  Y  D  P  I  S  R  P  Q  S  R  L  P  P  P  R  R  Y  V  K  R  K  P  Y  N  K  D  L  F  L  Q  A  N  Y  K  F  V  L  L  D  S  G  N  Y  T  P  D  S  M  D  P  D  K  M  L  Q  W  E  D  I  V  C  V  R  Y  S  T  P  F  H  V  Q  C  P  I  C  L  E  D  P  L  C  P  Q  I  T  S  C  G  H  I  F  C  F  P  C  V  M  Q  Y  F  M  I  S  E  E  D  D  H  K  N  N  F  K  K  K  C  P  L  C  F  M  M  I  S  S  Q  D  L  Y  T  I  Q  I  E  N  V  K  Q  H  R  V  S  D  V  I  E  F  L  L  L  T  R  H  K  D  S  F  T  L  S  L  K  N  N  D  G  I  V  G  R  E  E  V  Q  K  L  F  S  K  F  I  F  T  S  D  V  D  L  S  V  R  E  A  M  S  D  L  D  S  W  L  A  R  A  D  S  G  L  V  D  D  L  E  K  L  P  F  V  C  A  A  R  E  L  L  E  Q  R  K  T  Y  W  N  R  Q  H  I  A  V  Q  N  S  K  S  D  E  D  N  R  L  E  K  C  S  Y  S  S  Q  R  L  E  S  V  Q  V  H  S  A  G  Q  S  T  H  V  M  P  Y  S  N  P  A  D  K  P  I  L  Q  E  K  S  T  L  N  K  V  V  R  D  S  H  L  I  Q  A  S  D  V  E  S  I  E  E  R  V  G  S  S  L  S  L  Y  G  N  D  K  S  L  Q  K  D  T  S  G  I  T  D  R  E  E  I  S  S  Y  S  F  Y  Q  :  A  V  D  G  Q  H  L  I  L  H  P  L  N  M  K  C  L  L  H  Y  Y  G  G  Y  G  G  L  P  N  R :   I  S  G  K  I  L  Q  M  E  S  V  T  Q  S  E  A  M  R  R  R  Y  R  F  L  S  H  F  S  L  T  T  T  F  Q  :  L  C  E  I  D  L  S  K  I  M  P  M  D  A  L  S  P  F  M  E  E  I  R  S  R  E  K  Q  R  T  W  L  A  R  K  :  E  R  R  E  Q  V  K  A  E  A  I  G  M  Y  L  E  P  L  P  F  S  F  S  E  P  S  F  T  E  Q  P  T  F  T  S  N  D  F  E   : A  L  G  S  T  S  V  T  V  T  S  S  S  S  P  V  P  G  G  R  Q  L  F  S  N  V  A  R  L  G  F  A  A  G  C  D  P  P  A  L  K  M  D  E  S  A  R  G  S  S  V  A  A   : G  T  R  S  P  G  I  L  S  F  A  N  V  T  S  K  A  K  A  V  E  G  P  N  A  S  K  S  N  D  A  G  K  R  G  K  K  P  N  R  I  L  M  S  T  S  G  G  R  R  Y  *  I  L  K  G  R  D  K  E  *  S  V  C  I  F  K  R  C  F  A  F  Y  *  Q  L  R  F  V  C  C  Y  S  P  S  R  F  E  Q  W  L  F  L  *  N  C  F  G  K  N  C  </second_frame>
            <third_frame>   P  T  P  F  V  *  S  N  L  P  G  G  I  S  C  P  S  C  P  P  I  A  T  I  I  Q  P  P  P  P  L  L  L  L  L  Q  T  L  T  L  I  M  D  P  N  P  N  N  S  S  S  S  N  P  T  T  S  Q  :  E  T  W  L  P  L  H  L  L  L  V  D  P  P  K  R :   *  T  T  P  V  A  V  E  K  V  H  D  I  I  T  V  I  *  S  H  C  T  D  K  E  N  Q  L  G  P  M  I  L  P  A  E  E  T  S  L  A  L  T  V  P  K  E  L  L  P  A  Q  L  Q  E  E  P  R  W  L  V  E  T  T  C  S  I  F  S  M  I  P  F  L  V  H  N  L  G  C  L  L  L  G  D  T  S  R  G  S  L  T  T  K  T  C  F  F  K  Q  I  T  S  L  F  C  W  I  Q  A  I  T  R  L  T  R  W  I  Q  T  K  C  Y  S  G  R  I  L  F  V  *  D  I  P  L  H  F  M  C  N  A  P  Y  A  *  R  I  L  F  V  L  R  *  L  R  V  V  I  S  S  V  F  P  V  L  C  N  I  L  *  S  P  K  K  M  T  I  K  I  I  S  R  R  N  A  L  C  V  L  *  *  Y  L  H  R  I  C  T  P  F  K  L  R  T  L  N  N  I  V  S  V  M  *  L  N  F  Y  S  *  P  V  T  R  I  H  L  L  Y  L  *  K  I  M  M  A  L  L  V  E  R  R  F  K  S  Y  S  L  N  S  Y  L  R  P  M  S  T  F  L  F  E  R  Q  C  L  I  L  I  V  G  *  L  E  L  I  Q  A  *  L  M  T  W  R  N  F  P  L  S  V  L  Q  G  N  Y  W  S  R  G  R  R  T  G  I  G  N  I  L  L  F  K  I  A  N  L  T  K  I  I  V  W  R  S  A  L  I  V  L  S  D  *  K  V  F  R  S  I  L  L  D  N  L  L  M  *  C  H  T  V  I  Q  L  I  N  Q  Y  C  R  R  S  Q  L  S  I  R  *  *  G  T  L  I  L  F  K  L  Q  M  L  N  Q  *  K  S  V  L  D  L  H  C  P  Y  M  A  M  T  R  A  Y  R  K  T  Q  V  A  L  L  T  E  K  R  S  V  P  T  V  S  T  R :   Q  L  M  V  S  T  L  S  S  I  H  *  T  *  S  A  F  C  I  T  T  V  A  T  V  V  F  L  T   : E  S  V  E  R  F  Y  K  W  S  P  *  R  N  R  R  P  *  E  G  V  T  A  S  *  V  I  F  L  *  Q  Q  H  F  S :   F  V  K  L  I  S  A  R  *  C  P  W  M  H  F  L  P  L  W  R  K  S  E  V  G  K  N  K  G  R  G  *  L  G  R :   N  G  V  N  K  L  K  L  K  P  L  A  C  T  *  S  L  C  L  L  A  F  Q  N  L  L  S  Q  N  N  L  L  S  L  A  M  T  S  K  :  L  W  E  V  R  V  L  L  *  H  H  Q  A  P  L  C  L  E  A  G  N  C  S  P  M  L  Q  G  L  V  L  L  L  D  V  I  L  Q  R  *  K  W  M  S  L  H  V  V  L  L  L  Q  L  :  E  R  G  V  L  E  S  C  P  L  Q  M  *  P  P  K  Q  K  L  L  K  V  P  M  L  L  S  Q  M  M  Q  G  R  G  E  R  S  Q  I  G  S  *  C  Q  L  L  V  V  D  V  T  E  F  *  R  D  V  I  R  N  N  L  S  V  Y  L  R  D  V  L  P  F  I  S  N  *  D  L  F  V  V  T  H  L  V  G  L  S  N  G  Y  F  C  E  I  V  L  G  K  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81691" stop="81541"/>
                    <exon start="81439" stop="81393"/>
                    <exon start="81313" stop="80066"/>
                    <exon start="75791" stop="75703"/>
                    <exon start="73668" stop="73566"/>
                    <exon start="73474" stop="73370"/>
                    <exon start="71905" stop="71788"/>
                    <exon start="68409" stop="68251"/>
                    <exon start="68102" stop="67948"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2172</number_coding_nucleotides>
                  <number_encoded_amino_acids>724</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPRRNFMSILPSHSDNHTTSSSSSSSSPNPNSNHGSKSKQQQQQQPDNFSGNMATAASTSGGSSKKVNNSGSSRESSRHHNSDIISLHGQGKPARTNDPSSGRDQFGFNSPQGVVTRSASRRTQMVSGNHLLNFQYDPISRPQSRLPPPRRYVKRKPYNKDLFLQANYKFVLLDSGNYTPDSMDPDKMLQWEDIVCVRYSTPFHVQCPICLEDPLCPQITSCGHIFCFPCVMQYFMISEEDDHKNNFKKKCPLCFMMISSQDLYTIQIENVKQHRVSDVIEFLLLTRHKDSFTLSLKNNDGIVGREEVQKLFSKFIFTSDVDLSVREAMSDLDSWLARADSGLVDDLEKLPFVCAARELLEQRKTYWNRQHIAVQNSKSDEDNRLEKCSYSSQRLESVQVHSAGQSTHVMPYSNPADKPILQEKSTLNKVVRDSHLIQASDVESIEERVGSSLSLYGNDKSLQKDTSGITDREEISSYSFYQAVDGQHLILHPLNMKCLLHYYGGYGGLPNRISGKILQMESVTQSEAMRRRYRFLSHFSLTTTFQLCEIDLSKIMPMDALSPFMEEIRSREKQRTWLARKERREQVKAEAIGMYLEPLPFSFSEPSFTEQPTFTSNDFEALGSTSVTVTSSSSPVPGGRQLFSNVARLGFAAGCDPPALKMDESARGSSVAAGTRSPGILSFANVTSKAKAVEGPNASKSNDAGKRGKKPNRILMSTSGGRRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74991" e_stop="74437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="74991" e_stop="74437" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74991" stop="74437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGTGCTAGAGTATGAACTATAAGGGGCACTGAGAGGAGAACTTCTGCAGCAATGGAGGAATGTTCTTTTTTGAGATAAAAATATATATATATTTTTTTAAAAAATCATTTCAAAAAGCATGTGTAAACAGAGTGGCCGTCCTGGCAGTGTCAACAGTCTGTTGAATGGGGTCTTACCTTTTCTTTACATTCTTTCTTGGCTCGGTTATCCTTTCTCTTACTGGTTAATTATTTTGCTCCAACTTCATCCATAATTTTCACCATATCTTGGCTTGTCCAATTTCACCCTTCAGTCAAATTTTTAGGTTCATCTAAAGACCAAATCATTAACTGGTGAAGCCAGTGCAAGTTAGGTCAAACATTTTGGGTAAGATGAATGTTACCATATGTGCTTTTTGGAGGTAAGAACACTGAGGTCTATGTTAATGTTCCTCCAGTCCTTTAAAAGGATTTCCTTGTTATTTATATGCATTTTCTAAAGGCCCCTTTTTTTTCCAAAATACGAAGTGGTGTGTATTAGTAAACCTTATATAAGGTACATTAAAAGGAAAAAA</gDNA_template>
            <first_frame> R  V  L  E  Y  E  L  *  G  A  L  R  G  E  L  L  Q  Q  W  R  N  V  L  F  *  D  K  N  I  Y  I  F  F  *  K  I  I  S  K  S  M  C  K  Q  S  G  R  P  G  S  V  N  S  L  L  N  G  V  L  P  F  L  Y  I  L  S  W  L  G  Y  P  F  S  Y  W  L  I  I  L  L  Q  L  H  P  *  F  S  P  Y  L  G  L  S  N  F  T  L  Q  S  N  F  *  V  H  L  K  T  K  S  L  T  G  E  A  S  A  S  *  V  K  H  F  G  *  D  E  C  Y  H  M  C  F  L  E  V  R  T  L  R  S  M  L  M  F  L  Q  S  F  K  R  I  S  L  L  F  I  C  I  F  *  R  P  L  F  F  P  K  Y  E  V  V  C  I  S  K  P  Y  I  R  Y  I  K  R  K  K </first_frame>
            <second_frame>  G  C  *  S  M  N  Y  K  G  H  *  E  E  N  F  C  S  N  G  G  M  F  F  F  E  I  K  I  Y  I  Y  F  F  K  K  S  F  Q  K  A  C  V  N  R  V  A  V  L  A  V  S  T  V  C  *  M  G  S  Y  L  F  F  T  F  F  L  G  S  V  I  L  S  L  T  G  *  L  F  C  S  N  F  I  H  N  F  H  H  I  L  A  C  P  I  S  P  F  S  Q  I  F  R  F  I  *  R  P  N  H  *  L  V  K  P  V  Q  V  R  S  N  I  L  G  K  M  N  V  T  I  C  A  F  W  R  *  E  H  *  G  L  C  *  C  S  S  S  P  L  K  G  F  P  C  Y  L  Y  A  F  S  K  G  P  F  F  F  Q  N  T  K  W  C  V  L  V  N  L  I  *  G  T  L  K  G  K   </second_frame>
            <third_frame>   G  A  R  V  *  T  I  R  G  T  E  R  R  T  S  A  A  M  E  E  C  S  F  L  R  *  K  Y  I  Y  I  F  L  K  N  H  F  K  K  H  V  *  T  E  W  P  S  W  Q  C  Q  Q  S  V  E  W  G  L  T  F  S  L  H  S  F  L  A  R  L  S  F  L  L  L  V  N  Y  F  A  P  T  S  S  I  I  F  T  I  S  W  L  V  Q  F  H  P  S  V  K  F  L  G  S  S  K  D  Q  I  I  N  W  *  S  Q  C  K  L  G  Q  T  F  W  V  R  *  M  L  P  Y  V  L  F  G  G  K  N  T  E  V  Y  V  N  V  P  P  V  L  *  K  D  F  L  V  I  Y  M  H  F  L  K  A  P  F  F  S  K  I  R  S  G  V  Y  *  *  T  L  Y  K  V  H  *  K  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74863" stop="74654"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEWPSWQCQQSVEWGLTFSLHSFLARLSFLLLVNYFAPTSSIIFTISWLVQFHPSVKFLGSSKDQIINW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="81585" e_stop="81541"/>
            <exon e_start="81439" e_stop="81393"/>
            <exon e_start="81313" e_stop="81137"/>
            <exon e_start="80425" e_stop="80286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.590" acc_prob="0.998" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.781" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="81585" e_stop="81541" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.590" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81540" i_stop="81440" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81439" e_stop="81393" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="81392" i_stop="81314" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81313" e_stop="81137" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.781" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81136" i_stop="80426" i_length="711"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80425" e_stop="80286" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81585" stop="81541"/>
              <exon start="81439" stop="81393"/>
              <exon start="81313" stop="81137"/>
              <exon start="80425" stop="80286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAATCCAAACAACAGCAGCAGCAGCAACCCGACAACTTCTCAG : GAAACATGGCTACCGCTGCATCTACTTCTGGTGGATCCTCCAAAAAG : GTGAACAACTCCGGTAGCAGTCGAGAAAGTTCACGACATCATAACAGTGATATAATCTCACTGCACGGACAAGGAAAACCAGCTAGGACCAATGATCCTTCCAGCGGAAGAGACCAGTTTGGCTTTAACAGTCCCCAAGGAGTTGTTACCCGCTCAGCTTCAAGAAGAACCCAGATG : AGGAAGACGTACTGGAATAGGCAACATATTGCTGTTCAAAATAGCAAATCTGACGAAGATAATCGTTTGGAGAAGTGCTCTTATAGTTCTCAGCGACTAGAAAGTGTTCAGGTCCATTCTGCTGGACAATCTACTCATGT</gDNA_template>
            <first_frame> P  N  P  N  N  S  S  S  S  N  P  T  T  S  Q  :  E  T  W  L  P  L  H  L  L  L  V  D  P  P  K  R :   *  T  T  P  V  A  V  E  K  V  H  D  I  I  T  V  I  *  S  H  C  T  D  K  E  N  Q  L  G  P  M  I  L  P  A  E  E  T  S  L  A  L  T  V  P  K  E  L  L  P  A  Q  L  Q  E  E  P  R  * :   G  R  R  T  G  I  G  N  I  L  L  F  K  I  A  N  L  T  K  I  I  V  W  R  S  A  L  I  V  L  S  D  *  K  V  F  R  S  I  L  L  D  N  L  L  M  </first_frame>
            <second_frame>  Q  I  Q  T  T  A  A  A  A  T  R  Q  L  L  R :   K  H  G  Y  R  C  I  Y  F  W  W  I  L  Q  K   : G  E  Q  L  R  *  Q  S  R  K  F  T  T  S  *  Q  *  Y  N  L  T  A  R  T  R  K  T  S  *  D  Q  *  S  F  Q  R  K  R  P  V  W  L  *  Q  S  P  R  S  C  Y  P  L  S  F  K  K  N  P  D   : E  E  D  V  L  E  *  A  T  Y  C  C  S  K  *  Q  I  *  R  R  *  S  F  G  E  V  L  L  *  F  S  A  T  R  K  C  S  G  P  F  C  W  T  I  Y  S  C </second_frame>
            <third_frame>   K  S  K  Q  Q  Q  Q  Q  Q  P  D  N  F  S   : G  N  M  A  T  A  A  S  T  S  G  G  S  S  K  K  :  V  N  N  S  G  S  S  R  E  S  S  R  H  H  N  S  D  I  I  S  L  H  G  Q  G  K  P  A  R  T  N  D  P  S  S  G  R  D  Q  F  G  F  N  S  P  Q  G  V  V  T  R  S  A  S  R  R  T  Q  M  :  R  K  T  Y  W  N  R  Q  H  I  A  V  Q  N  S  K  S  D  E  D  N  R  L  E  K  C  S  Y  S  S  Q  R  L  E  S  V  Q  V  H  S  A  G  Q  S  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0098J01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81583" stop="81541"/>
                    <exon start="81439" stop="81393"/>
                    <exon start="81313" stop="81137"/>
                    <exon start="80425" stop="80288"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKQQQQQQPDNFSGNMATAASTSGGSSKKVNNSGSSRESSRHHNSDIISLHGQGKPARTNDPSSGRDQFGFNSPQGVVTRSASRRTQMRKTYWNRQHIAVQNSKSDEDNRLEKCSYSSQRLESVQVHSAGQSTH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 183 chains have been computed
$ 
$ memory statistics:
$ 514200 bytes spliced alignments in total
$ 159 spliced alignments have been stored
$ 3233 bytes was the average size of a spliced alignment
$ 21984 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1998 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 200 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:48:44
-->
