<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:04:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302990" ref_strand="+" ref_description="SGN-E302990 [cLEW-26-K17]">
      <seq>cctaaacccgaattttcctgagggagtttacccatttctccaacactcgacgctttcacgggaatgtcgaaatggtggcgtgcggtggcaaccaccgccggaggtctgaggtcgacggaggtaactagcaggagaacgtattttacaattcaagcgatccctagggaggtcagcggaagaagagtttccagtagggaccgagcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgacgatccaacttccattgtcgccgcaagttctgtttctagaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattcgagctggttcgggctcgtcaactttactggaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="16976" stop="18356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17276" g_stop="17728" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18056" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="507" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E302990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17276" e_stop="17728"/>
          <exon e_start="18003" e_stop="18056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAACCCGAATTTTCCTGAGGGAGTTTACCCATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCT</genome_strand>
        <mrna_strand>CCTAAACCCGAATTTTCCTGAGGGAGTTTACCCATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724270" ref_strand="+" ref_description="SGN-E724270 [FC23CD05]">
      <seq>gccgattggagggagtttacccctttctccacactcgacgctttcacgggaatgtcgaaatggtggcgtgcggtggcaaccaccgccggaggtctgaggtcgacggaggtaactagcaggagaacgtattttacaattcaagcgatccctagggaggtcagcggaagaagagtttccagtagggaccgagcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgacgatccaacttccattgtcgccgcaagttctgtttctagaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattcgagctggttcgggctcgtcaactttactggaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccctccctgtttgtaaggttaaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="16995" stop="20734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17285" g_stop="17728" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="571" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20434" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="763" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E724270" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17285" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTCCTGAGGGAGTTTACCCATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAA</genome_strand>
        <mrna_strand>GCCGATT--GGAGGGAGTTTACCCCTTTCTCCA-CACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCCTCCCTGTTTGTAAGGTTAAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709006" ref_strand="+" ref_description="SGN-E709006 [FA42BF05]">
      <seq>gtttacccatttctccacactcgacgctttcacgggaatgtcgaaatggtggcgtgcggtggcaaccaccgccggaggtctgaggtcgacggaggtaactagcaggagaacgtattttacaattcaagcgatccctagggaggtcagcggaagaagagtttccagtagggaccgagcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgacgatccaacttccattgtcgccgcaagttctgtttctagaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattcgagctggttcgggctcgtcaactttactggaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaaacaagaatgaaaccatccctgtttgtaaggttaaggcaacgccagttgatacctaattttgtcgatgctatttttcaactggcagatgcatctgaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17001" stop="20794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17301" g_stop="17728" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="557" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20494" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="809" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E709006" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17301" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACCCATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTC</genome_strand>
        <mrna_strand>GTTTACCCATTTCTCC-ACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAACAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATACCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709227" ref_strand="+" ref_description="SGN-E709227 [FA51AC09]">
      <seq>atttctccaacactcgacgctttcacgggaatgtcgaaatggtggcgtgcggtggcaaccaccgccggaggtctgaggtcgacggaggtaactagcaggagaacgtattttacaattcaagcgatccctagggaggtcagcggaagaagagtttccagtagggaccgagcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgacgatccaacttccattgtcgccgcaagttctgtttctagaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattcgagctggttcgggctcgtcaactttactggaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatcccacttggaagctcttaagcaagaatgacaccatccctgtttgtaaggttaaggcaacgccagttgatagctaattttgtcgatgctattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17009" stop="20770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17309" g_stop="17728" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="550" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20470" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="778" r_length="228" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E709227" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17309" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTT</genome_strand>
        <mrna_strand>ATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCCACTTGGAAGCTCTTAAGCAAGAATGACACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474959" ref_strand="+" ref_description="SGN-E474959 [cSTB-38-F11]">
      <seq>caacactcgacgctttcacaggaatgtcgaaatggtggcgtgcggtggcaaccactgccggaggtctgaggtcgatggaggtaactagcaggagatcgtattttacaattcaagcgatccctatggaggtaagcggaagaagagtttccagtagggaccgggcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgaagatccaacttccattgtcgcctcaagttctgtttctcgaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattagagctggttcgggctcgtcaactttactggaatctggaaaagtactgcccattaagattcataaggatgaagagactggtaagatattgaatttggtctttgtatgggcagaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17016" stop="18411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17316" g_stop="17728" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18111" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="522" r_length="109" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E474959" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17316" e_stop="17728"/>
          <exon e_start="18003" e_stop="18111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACG</genome_strand>
        <mrna_strand>CAACACTCGACGCTTTCACAGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACTGCCGGAGGTCTGAGGTCGATGGAGGTAACTAGCAGGAGATCGTATTTTACAATTCAAGCGATCCCTATGGAGGTAAGCGGAAGAAGAGTTTCCAGTAGGGACCGGGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGAAGATCCAACTTCCATTGTCGCCTCAAGTTCTGTTTCTCGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTAGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTGCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAGACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCAGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448943" ref_strand="+" ref_description="SGN-E448943 [cSTS-4-N6]">
      <seq>cgctttcacaggaatgtcgaaatggtggcgtgcggtggcaaccactgccggaggtctgaggtcgatggaggtaactagcaggagatcgtattttacaattcaagcgatccctagggaggtaagcggaagaagagtttccagtagggaccgggcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgaagatccaacttccattgtcgcctcaagttctgtttctcgaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattagagctggttcgggctcgtcaactttactggaatctggaaaagtactgcccattaagattcataaggatgaagagactggtaagatattgaatttggtctttgtatgggcagaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcatgagtgccctggtctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17026" stop="18426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17326" g_stop="17728" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18126" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="527" r_length="124" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E448943" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17326" e_stop="17728"/>
          <exon e_start="18003" e_stop="18126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCA</genome_strand>
        <mrna_strand>CGCTTTCACAGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACTGCCGGAGGTCTGAGGTCGATGGAGGTAACTAGCAGGAGATCGTATTTTACAATTCAAGCGATCCCTAGGGAGGTAAGCGGAAGAAGAGTTTCCAGTAGGGACCGGGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGAAGATCCAACTTCCATTGTCGCCTCAAGTTCTGTTTCTCGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTAGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTGCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAGACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCAGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCATGAGTGCCCTGGTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704400" ref_strand="+" ref_description="SGN-E704400 [FA24AG05]">
      <seq>cgggaatgtcgaaatggtggcgtgcggtggcaaccaccgccggaggtctgaggtcgacggaggtaactagcaggagaacgtattttacaattcaagcgatccctagggaggtcagcggaagaagagtttccagtagggaccgagcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgacgatccaacttccattgtcgccgcaagttctgtttctagaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattcgagctggttcgggctcgtcaactttactggaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccatccctgtttgtaaggttaaggcaacgccagttgatagctaattttgtcgatgctatttttcaactgggcagatgcatctgaagtctccattagttcaacattgtctgttctaattttgacctggtttcgtagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17034" stop="20843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17334" g_stop="17728" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="525" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20543" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="827" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E704400" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17334" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACT-GGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTG</genome_strand>
        <mrna_strand>CGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704562" ref_strand="+" ref_description="SGN-E704562 [FA24CE10]">
      <seq>cgggaatgtcgaaatggtggcgtgcggtggcaaccaccgccggaggtctgaggtcgacggaggtaactagcaggagaacgtattttacaattcaagcgatccctagggaggtcagcggaagaagagtttccagtagggaccgagcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgacgatccaacttccattgtcgccgcaagttctgtttctagaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattcgagctggttcgggctcgtcaactttactggaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccatccctgtttgtaaggttaaggcaacgcccgttgatagctaattttgtcgatgctatttttcaactggcagatgcatctgaagtctccattagttcaacattgtctgttctaattttgacctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17034" stop="20834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17334" g_stop="17728" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="525" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20534" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="817" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E704562" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17334" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGT</genome_strand>
        <mrna_strand>CGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCCGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727012" ref_strand="+" ref_description="SGN-E727012 [LA13BH08]">
      <seq>ggaatgtcgaaatggtggcgtgcggtggcaaccaccgccggaggtctgaggtcgacggaggtaactagcaggagaacgtattttacaattcaagcgatccctagggaggtcagcggaagaagagtttccagtagggaccgagcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgacgatccaacttccattgtcgccgcaagttctgtttctagaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattcgagctggttcgggctcgtcaactttactggaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccatccctgtttgtaaggttaaggcaacgccagttgatagctaattttgtcgatgctatttttncactggcagatgcatctgaagtctccattagttncacattgtctgttctaattttgacctggtttcgtagtggtgtatatggacacggtcaaaagacattagaaacttttgctatactgtagtagtaaaattgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17036" stop="20909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17336" g_stop="17728" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="523" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20609" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="890" r_length="367" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E727012" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17336" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATT</genome_strand>
        <mrna_strand>GGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTNCACTGGCAGATGCATCTGAAGTCTCCATTAGTTNCACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329925" ref_strand="+" ref_description="SGN-E329925 [cTOD-5-M9]">
      <seq>tgcggtggcaaccaccgccggaggtctgaggtcgacggaggtaactagcaggagaacgtattttacaattcaagcgatccctagggaggtcagcggaagaagagtttccagtagggaccgagcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgacgatccaacttccattgtcgccgcaagttctgtttctagaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattcgagctggttcgggctcgtcaactttactggaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17056" stop="20666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17356" g_stop="17728" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="503" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20366" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="627" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E329925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17356" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATAT</genome_strand>
        <mrna_strand>TGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471927" ref_strand="+" ref_description="SGN-E471927 [cSTB-26-M8]">
      <seq>caaccactgccggaggtctgaggtcgatggaggtaactagcaggagatcgtattttacaattcaagcgatccctagggaggtaagcggaagaagagtttccagtagggaccgggcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgaagatccaacttccattgtcgcctcaagttctgtttctcgaaagttccttcttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattagagctggttcgggctcgtcaactttactggaatctggaaaagtactgcccattaagattcataaggatgaagagactggtaagatattgaatttggtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17064" stop="18348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17364" g_stop="17728" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18048" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="411" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E471927" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17364" e_stop="17728"/>
          <exon e_start="18003" e_stop="18048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTG</genome_strand>
        <mrna_strand>CAACCACTGCCGGAGGTCTGAGGTCGATGGAGGTAACTAGCAGGAGATCGTATTTTACAATTCAAGCGATCCCTAGGGAGGTAAGCGGAAGAAGAGTTTCCAGTAGGGACCGGGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGAAGATCCAACTTCCATTGTCGCCTCAAGTTCTGTTTCTCGAAAGTTCCTTCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTAGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTGCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAGACTGGTAAGATATTGAATTTGGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268729" ref_strand="+" ref_description="SGN-E268729 [cLEM-16-P23]">
      <seq>gtttccagtaaggaccgagcccaaagtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgacgatccaacttccattgtcgccgcaagttctgtttctagaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattcgagctggttcgggctcgtcaactttactggaatctggaaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17159" stop="18016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17459" g_stop="17716" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E268729" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17459" e_stop="17716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTA</genome_strand>
        <mrna_strand>GTTTCCAGTAAGGACCGAGCCCAAAGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561680" ref_strand="+" ref_description="SGN-E561680 [18254]">
      <seq>attaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattagagctggttcgggctcgtcaactttactggaatctggaaaagtactgcccattaagattcataaggatgaagagactggtaagatattgaatttggtctttgtatgggcagaagatggaacaaaattaagggtcgacgtgccggttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttcttgtgcccagccgagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccagcttggaagctcttaagcaagaatgaggccatccctgtttgtaaggttaaggcaacaccagttgatagctaattttgtcgatgctatttttcaattggcaagatgcatctgaagtccattagttgaacattgtctgttctaatttgacctggtttcgtagtggtgtatatggtcacggtcaaaagacattagaagcttttactatattgtagtagtaaaattgctattttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17306" stop="20915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17606" g_stop="17728" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="253" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20615" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="624" r_length="371" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E561680" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17606" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGC-AGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGA</genome_strand>
        <mrna_strand>ATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTAGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTGCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAGACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCAGAAGATGGAACAAAATTAAGGGTCGACGTGCCGGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTCTTGTGCCCAGCCGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAGCTTGGAAGCTCTTAAGCAAGAATGAGGCCATCCCTGTTTGTAAGGTTAAGGCAACACCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAATTGGCAAGATGCATCTGAAG--TCCATTAGTTGAACATTGTCTGTTCTAA-TTTGACCTGGTTTCGTAGTGGTGTATATGGTCACGGTCAAAAGACATTAGAAGCTTTTACTATATTGTAGTAGTAAAATTGCTATTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377209" ref_strand="+" ref_description="SGN-E377209 [TUS-19-H12](-)">
      <seq>ggaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccatccctgtttgtaaggttaaggcaacgccagttgatagctaattttgtcgatgctatttttcaactggcagatgcatctgaagtctccattagttcaacattgtctgttctaattttgacctggtttcgtagtggtgtatatggacacggtcaaaagacattagaaacttttgctatactgtagtagtaaaattgctattttgggaattgttctagaataataaacttgtgcattaatgagtaaattggaaatgcaactgcagtctttttaagttttttagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17401" stop="20993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17701" g_stop="17728" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="158" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20692" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="609" r_length="451" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E377209" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17701" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTC-AAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</genome_strand>
        <mrna_strand>GGAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231093" ref_strand="+" ref_description="SGN-E231093 [cLED-5-H22]">
      <seq>gaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccatccctgtttgtaaggttaaggcaacgccagttgatagctaattttgtcgatgctatttttcaactggcagatgcatctgaagtctccattagttcaacattgtctgttctaattttgacctggtttcgtagtggtgtatatggacacggtcaaaagacattagaaacttttgctatactgtagtagtaaaattgctattttgggaattgttctagaataataaacttgtgcattaatgagtaaattggaaatgcaactgcagtctttttaaagtttttagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17402" stop="20993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17702" g_stop="17728" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="157" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20692" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="608" r_length="451" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="609" polyA_stop="619"/>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E231093" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17702" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTC-AAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</genome_strand>
        <mrna_strand>GAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAAGTTTTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376769" ref_strand="+" ref_description="SGN-E376769 [TUS-19-G20]">
      <seq>gaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccatccctgtttgtaaggttaaggcaacgccagttgatagctaattttgtcgatgctatttttcaactggcagatgcatctgaagtctccattagttcaacattgtctgttctaattttgacctggtttcgtagtggtgtatatggacacggtcaaaagacattagaaacttttgctatactgtagtagtaaaattgctattttgggaattgttctagaataataaacttgtgcattaatgagtaaattggaaatgcaactgcagtctttttaagttttttagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17402" stop="20993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17702" g_stop="17728" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="157" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20692" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="608" r_length="451" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E376769" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17702" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTC-AAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</genome_strand>
        <mrna_strand>GAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377210" ref_strand="+" ref_description="SGN-E377210 [TUS-19-H12]">
      <seq>gaatctggaaaagtactttccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaatatggaacaaaattaacggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctgttctcatgaaaggtggttatctaaacaagattaaacctttcctaacgttgttgtgcccaacgcagagtataccttataataattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttgtaagctcttaatcaagaatgaaaccatccctgtttgtcaggttaacgcaacgccagttgatagctaattttgtcgatgctattttttaactggcagatgcatcttaagtctccattagttcaacattgtctgttctaattttgacctggtttcgtactggcgtatatggacacggtcaaaagacattagaaacttttgctatactgtagtagtaaaattgctattttgggaattgttctagaataataaacttgtgcattaatgagtaaattggaaatgcaactgcagtctttttaagttttttagtttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17402" stop="20991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17702" g_stop="17728" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="157" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20689" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="605" r_length="448" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E377210" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17702" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCA-AAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTA</genome_strand>
        <mrna_strand>GAATCTGGAAAAGTACTTTCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAATATGGAACAAAATTAACGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGTTCTCATGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAAACCTTTCCTAACGTTGTTGTGCCCAACGCAGAGTATACCTTATAATAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGTAAGCTCTTAATCAAGAATGAAACCATCCCTGTTTGTCAGGTTAACGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTTAACTGGCAGATGCATCTTAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTACTGGCGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374636" ref_strand="+" ref_description="SGN-E374636 [TUS-15-H11]">
      <seq>gaatctggacaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattaaaccttccctaacgttgttgtgcccagcggagaatatacctcataaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccatccctgtttgtaaggttaacgcaacgccagttgatagctaattttgtcgatgctatttttcaactggcagatgcatctgaagtctccattagttcaacattgtctgttctaattgtgacctggtttcgtactggtgtatatggacacggtcatgagacattagaaacttttgctatactgtaatagtaaaattgctattttgggaattgttctagaataataaacttgtgcattaatgagtaaattggaaatgcaactgcagtctttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17402" stop="20981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17702" g_stop="17728" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="157" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20681" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="597" r_length="440" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E374636" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17702" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCA-AAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAA</genome_strand>
        <mrna_strand>GAATCTGGACAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAAACCTTCCCTAACGTTGTTGTGCCCAGCGGAGAATATACCTCATAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAACGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTGTGACCTGGTTTCGTACTGGTGTATATGGACACGGTCATGAGACATTAGAAACTTTTGCTATACTGTAATAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409080" ref_strand="+" ref_description="SGN-E409080 [PPI-13-E17]">
      <seq>aaaagtactgcccattaagattcataaggatgaagagactggtaagatattgaatttggtctttgtatgggcagaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcatgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttcctgtgcccagccgagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaggccatccctgtttgtaaggttaaggcaacaccagttgatagctaattttgtcgatgctatttttcaactggcaagatgcatctgaagtccattagttgaacattgtctgttctaatttgacctggtttcgtagtggtgtatatggacacggtcaaaagacattagaagcttttactatactgtagtagtaaaattgctattttgggacttgttctagaataatgaacttgtgcattaatgagtaaatggaaaaattcactgcnnaaaanaaaaagcaaaaaacnnnnnn</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17698" stop="20961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17710" g_stop="17728" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="149" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20660" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="564" r_length="415" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E409080" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17710" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGC-AGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAA</genome_strand>
        <mrna_strand>AAAAGTACTGCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAGACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCAGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCATGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTCCTGTGCCCAGCCGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAGGCCATCCCTGTTTGTAAGGTTAAGGCAACACCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAAGATGCATCTGAAG--TCCATTAGTTGAACATTGTCTGTTCTAA-TTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAGCTTTTACTATACTGTAGTAGTAAAATTGCTATTTTGGGACTTGTTCTAGAATAATGAACTTGTGCATTAATGAGTAAA-TGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376768" ref_strand="+" ref_description="SGN-E376768 [TUS-19-G20](-)">
      <seq>aaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggaaaatatacctcaaaaaaattgaggtggacataagtcagatagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccatccctgtttgtaaggttaaggcaacgccagttgatagctaattttgtcgatgctatttttcaactggcagatgcatctgaagtctccattagttcaacattgtctgttctaattttgacctggtttcgtagtggtgtatatggacacggtcaaaagacattagaaacttttgctatactgtagtagtaaaattgctattttgggaattgttctagaataataaacttgtgcattaatgagtaaattggaaatgcaactgcagtctttttaagttttttagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17698" stop="20993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17711" g_stop="17728" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="148" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20692" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="599" r_length="451" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E376768" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17711" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTC-AAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</genome_strand>
        <mrna_strand>AAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAAAATATACCTCAAAAAAATTGAGGTGGACATAAGTCAGATAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552792" ref_strand="+" ref_description="SGN-E552792 [cTSB-5-A5]">
      <seq>agatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccatccctgtttgtaaggttaaggcaacgccagttgatagctaattttgtcgatgctatttttcaactggcagatgcatctgaagtctccattagttcaacattgtctgttctaattttgacctggtttcgtagtggtgtatatggacacggtcaaaagacattagaaacttttgctatactgtagtagtaaaattgctattttgggaattgttctagaataataaacttgtgcattaatgagtaaattggaaatgcaactgcagtctttttaagttttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="17728" stop="129578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18028" g_stop="18132" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20243" g_stop="20689" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="552" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20690" i_stop="22948" i_length="2259">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.094" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22949" g_stop="22962" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="566" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E552792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18028" e_stop="18132"/>
          <exon e_start="20243" e_stop="20689"/>
          <exon e_start="22949" e_stop="22962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTAATTTTGGGTCACCTGTGGCTGCCTCATGAAAGCAATTTATTTTTTAAGTAGGAATGGTGCTGGAGGATATTTTTATTATTGAAATTTGAAAATGTTGTATGACTTGTTCTAACTAGTCAATTTCCGTCCATGTAACCACCGAAAGACTTGGCTAGTGACAACAAGCCAGCTTTGATACGTAGCTGTCAAAAAAAAATTAAAAATCAGTTCGATGCATAGAAATGAGCAAGTCAAGGGAGGGAGATGACGGTTGGATGAAATTATTATTATTATTATTAAAAAGGGTTAGCTCTGTATTGAGGATAATGTTATTGTTTTTAATTCTCTGGATTGATTGGCTTTCGAAATATATTTTCTCTGGGAAAGCAAATGCAACTTAAAAGTTGAGAAGACTTCCTGAACAAGGATGAAAATAGGAAAAATAAGTTCGGGTGTGACAGAGACGATATTTTCATTTATGGGTTTAAAAAGATAAGCAAGCATGTCACATACAAGCGAATCAGATTAAATATGGAGTAGTAATCAAGGATTCAAAAAGATAAACAAACATGTTAATAGTATTCATATACAAGTGAATTGGATCAAATATAAATAACTAGACAAAATTTAATTCTAGGTTGACACAGACAAAGAAACATAGAAAGTTAAAAAAAAAATTAGGTATCGTTGTTTCTAGTCCTATTGAATATGGATATTGGATACAATCAAATTGAGGCCAGGAAAAGAATAAACCAACTCATGAACTCACTTTACCACTGAACCAAGCCTTTGTCTCACGCTAAGGAAATTCACCATTAACTACATAAACGTAAATTAATAAATCAATTATATATATATAATATAATTTTTTGAAGAAGGAGGTTCGGATGAACAAGGCTTTACGTAACTCCATCCCTTTCCACCGCCCTCGCCTTCACCATCATGATACTTTTATATATAAATGTCCTTGTATATACAATATAACAATATAATTAGTGCAAAGCATGCGTAGAATATACTACCTAGTGTTATAGTGAGGTTGGAAGGATACAATGTGTACATATTTTGTTTGTTTTATTTGTCACTTTCAACATACATTAAGAAATGACTATTACTATTATTATTGTTTTTAAATTTAAGTCCAATATTAATTACTTTTTAAATTTTTTTTTATAACTTAAGTACTAAATTTCAATCAATATGAGTAAAAGGATAAAATCTTCAAACCAATCATTATTTCTTCAAGAGTGTGTAATATCCAAAATGAATAAAAGAAATACCATCTATGCATCTTATGCTTTTTTTGAATTGCAAAGTGGAGCTTGAGAGAACAGAATGTAATGCAAAATATTATCCTTATCTCAAAGAGTAGAGTGAGCTATTAAAGGATAGAAACGTATGAATATACAAAATCTTATCCTTAATTCCTCATCTTGAGAGTGCAAAGATCTTATCCTTGTCTAGAAGTGAAAAGTATCGTTTAGAAGGAAGCATCGTATTATATATGAAAATCTAATTTAGAAATAGAAAAAATTATTTTCGATTAACCTTTAACTAAATAATACGATAATTAAAGTATAAAAAAAATTAAAAATCAAAAGATTATATAATTACTAAGTAACCATTAAAAATATATTTTAAAAATCTTTTCTAATATTATATTTTACTTCATACCAAATATAACCTTATACGTGTTAACGCTGATATACGTTCAAGTCGTTGCTCCGTAAAATGGTGTACATGTCCTTTTCAATGTCGCAATCTCCTCATCATATTTGATATTCATTGTCGGATTACTTTATTATATCAGTGAAAATGAAAAACACGTTCATTGCCTTACACAGACAAAAAATAAATAAATGGGAAACACGTTATTTCTTGTTCTTGGTTGTTCTTTTATGAAGAAAATAAAATGGGTAACACATTATTTTTTCTACTTGGTTGTTCTTTTTTCTATGAAATAAAAACGTTACGTTTTTTCTTCTTCTTGGTTGTTATTTTTATCAAAATAATAAGTGGCTTTGATAAAATTATTGGTCTAAATTATATTTTAATATGAGTTTATTTTTTAATTAAACACTATATATATTCATGTAAGTATTTTATTTTAGCTTTGAGGTATAAAACTGTTAATAAGCTTTTATAAGTTATATAATCTCTCTCCATATATTGTTAATTTTAGGTAATTTATGATATTTCAGTATACTTATTGGAATATCTTTTTTGTTAGAATAACATAAACTTATTGAAACTTTGAAATATTCTTGTAACAAAAAGAAAAAAAAAAGAAA</genome_strand>
        <mrna_strand>AGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364054" ref_strand="+" ref_description="SGN-E364054 [cLPP-16-P9]">
      <seq>tcttgtacaacttttttccgggaacccgccgacgccgaccaacccgacgccggcgagttttcccaccttttttacccttctccgaggttcctctgttttcaactatgctcctgaacgcaggttttgtacagtgatattattattatctttttaaggcctcaaacgtaccatgcattttgtaaccaaaactaccacaggcaatgcgttggtggcagagcgccttttcatcttcctccggttcgtcttcctcttgctcgacatgctcctcttgcaaagtatactctgacgatagcctccttgcctccggtggaggcattcgttacaccatcaaatccgcttttttcttcgcccgtaagcgccgacacgctcgcgcgaaaaaactccaaaatcttacggaacatgacggtgatgactggcgttctcactgttccaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="25266" stop="26301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25566" g_stop="26001" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E364054" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25566" e_stop="26001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTACAACTTTTTTCCGGGAACCCGCCGACGCCGACCAACCCGACGCCGGCGAGTTTTCCCACCTTTTTTACCCTTCTCCGAGGTTCCTCTGTTTTCAACTATGCTCCTGAACGCAGGTTTTGTACAGTGTTATTATTATTATCTTTTTAAGGCCTCAAACGTACCATGCATTTTGTAACCAAAACTACCACAGGCAATGCGTTGGTGGCAGAGCGCCTTTTCATCTTCCTCCGGTTCGTCTTCCTCTTCCTCGTCATGCTCCTCTTCCAAAGTATACTCTGACGATAGCCTCCTTGCCTCCGGTGGAGGCATTCGTTACACCATCAAATCCGCTTTTTTCTTCGCCCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCGTTCTCACTGTTCCAATGA</genome_strand>
        <mrna_strand>TCTTGTACAACTTTTTTCCGGGAACCCGCCGACGCCGACCAACCCGACGCCGGCGAGTTTTCCCACCTTTTTTACCCTTCTCCGAGGTTCCTCTGTTTTCAACTATGCTCCTGAACGCAGGTTTTGTACAGTGATATTATTATTATCTTTTTAAGGCCTCAAACGTACCATGCATTTTGTAACCAAAACTACCACAGGCAATGCGTTGGTGGCAGAGCGCCTTTTCATCTTCCTCCGGTTCGTCTTCCTCTTGCTCGACATGCTCCTCTTGCAAAGTATACTCTGACGATAGCCTCCTTGCCTCCGGTGGAGGCATTCGTTACACCATCAAATCCGCTTTTTTCTTCGCCCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCGTTCTCACTGTTCCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362496" ref_strand="+" ref_description="SGN-E362496 [cLPP-1-P10]">
      <seq>tacaacttttttccgggaacccgccgacgccgaccaacccgacgccggcgagttttcccaccttttttacccttctccgaggttcctctgttttcaactatgctcctgaacgcaggttttgtacagtgttattattattatctttttaaggcctcaaacgtaccatgcattttgtaaccaaaactaccacaggcaatgcgttggtggcagagcgccttttcatcttcctccggttcgtcttcctcttcctcgtcatgctcctcttccaaagtatactctgacgatagcctccttgcctccggtggaggcattcgttacaccatcaaatccgcttttttcttcgcccgtaagcgccgacacgctcgcgcgaaaaaactccaaaatcttacggaacatgacggtgatgactggcgttctcactgttccaatgataattttccgtccaaatgttcctccgatcgtccgcctccgcaacctttgcctttgccggagctgcatcttgtgcttcgccacgaatctgatgcggtttcgaatgaacccaatgtaccactgccatcgccctcagacgcgcatttgcatcatagaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="25271" stop="26460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25571" g_stop="26160" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E362496" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25571" e_stop="26160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACTTTTTTCCGGGAACCCGCCGACGCCGACCAACCCGACGCCGGCGAGTTTTCCCACCTTTTTTACCCTTCTCCGAGGTTCCTCTGTTTTCAACTATGCTCCTGAACGCAGGTTTTGTACAGTGTTATTATTATTATCTTTTTAAGGCCTCAAACGTACCATGCATTTTGTAACCAAAACTACCACAGGCAATGCGTTGGTGGCAGAGCGCCTTTTCATCTTCCTCCGGTTCGTCTTCCTCTTCCTCGTCATGCTCCTCTTCCAAAGTATACTCTGACGATAGCCTCCTTGCCTCCGGTGGAGGCATTCGTTACACCATCAAATCCGCTTTTTTCTTCGCCCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCGTTCTCACTGTTCCAATGATAATTTGCCGTCCAAATATTCCTCCGATCGTCCGCCTCCGCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCCGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGG</genome_strand>
        <mrna_strand>TACAACTTTTTTCCGGGAACCCGCCGACGCCGACCAACCCGACGCCGGCGAGTTTTCCCACCTTTTTTACCCTTCTCCGAGGTTCCTCTGTTTTCAACTATGCTCCTGAACGCAGGTTTTGTACAGTGTTATTATTATTATCTTTTTAAGGCCTCAAACGTACCATGCATTTTGTAACCAAAACTACCACAGGCAATGCGTTGGTGGCAGAGCGCCTTTTCATCTTCCTCCGGTTCGTCTTCCTCTTCCTCGTCATGCTCCTCTTCCAAAGTATACTCTGACGATAGCCTCCTTGCCTCCGGTGGAGGCATTCGTTACACCATCAAATCCGCTTTTTTCTTCGCCCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCGTTCTCACTGTTCCAATGATAATTTTCCGTCCAAATGTTCCTCCGATCGTCCGCCTCCGCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCTGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270004" ref_strand="+" ref_description="SGN-E270004 [cLEM-7-F14]">
      <seq>ccatacgatcgatgtttattccgtaagcgccgacacgctcgcgcgaaaaaactccaaaatcttacggaacatgacggtgatgactggcgttctcactgttccaatgataatttgccgtccaaatattcctccgatcgtccgcctccgcaacctttgcctttgccggagctgcatcttgtgcttcgccacgaatccgatgcggtttcgaatgaacccaatgtaccactgccatcgccctcagacgcgcatttgcatcatagaactggagaggattcttccacccgtaaggatggtgtagcatcccatggaagcagattatcaagccaagatggtcgaaagaagaaaaaagagcacttgggaagtcgcttgtctaggaagacacctcaaaagcttcatgttgctgatagagcttctgatatcaggatcagcgcacccattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="25615" stop="26912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25915" g_stop="26205" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="311" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26206" i_stop="26482" i_length="277">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26483" g_stop="26612" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="441" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E270004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25915" e_stop="26205"/>
          <exon e_start="26483" e_stop="26612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCGTTCTCACTGTTCCAATGATAATTTGCCGTCCAAATATTCCTCCGATCGTCCGCCTCCGCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCCGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGGAGAGGATTCTTCCACCCGTAAGGATGGTGTAGCATCCCATGGAAGGTATGTTATCTTTTATGAACTTGTTTCTTTCCAATTAATCTGAATTTCCCGAATTGGATGCATGATTTGTTTTCCTTACAACTCAGGCTTCATTAATATTGTAAATTTTAGCCTTTGATTCTACGGTTTACCACATTTTTTTGCAATTGAGGTTCACCATAAAGAATATTCCTTTTTTTTCTTAGCATGGTTATGGTATTACTCATTCAGCTAGCAAGCTTGTTAAATTTTGGATTTTTCTTACCTGTATTTGTGTTCTTCTTTAATTTTGTTTTAGCAGATTATCAAGCCAAGATGGTCGAAAGAAGAAAAAAGAGCACTTGGGAAGTCGCTTGTCTAGGAAGACACCTCAAAAGCTTCATGTTGCTGATAGAGCTTCTGATATCAGGATCAGCGCACCCATTAGT</genome_strand>
        <mrna_strand>CCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCGTTCTCACTGTTCCAATGATAATTTGCCGTCCAAATATTCCTCCGATCGTCCGCCTCCGCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCCGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGGAGAGGATTCTTCCACCCGTAAGGATGGTGTAGCATCCCATGGAAG.....................................................................................................................................................................................................................................................................................CAGATTATCAAGCCAAGATGGTCGAAAGAAGAAAAAAGAGCACTTGGGAAGTCGCTTGTCTAGGAAGACACCTCAAAAGCTTCATGTTGCTGATAGAGCTTCTGATATCAGGATCAGCGCACCCATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361083" ref_strand="+" ref_description="SGN-E361083 [cLPP-13-G4]">
      <seq>gcaacctttgcctttgccggagctgcatcttgtgcttcgccacgaatctgatgcggtttcgaatgaacccaatgtaccactgccatcgccctcagacgcgcatttgcatcatagaactggagaggattcttccactcgtaaggatggtgtagcatcccatgggagattatcaagccaagatgctcgaaagaagaaaaaagagcacttgggaagtcgcttgtctaggaagacacctcaaaagcttcatgttgctgatagagtttctgatatcaggatcagtgcacccattagtgctcctacaactccttatgcaagtcctggagtcagtccactaaaagctggggatcttttaaatcataattacatggcattccctggtgcttttcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="25741" stop="27010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26041" g_stop="26205" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26206" i_stop="26485" i_length="280">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26486" g_stop="26710" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="390" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E361083" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26041" e_stop="26205"/>
          <exon e_start="26486" e_stop="26710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCCGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGGAGAGGATTCTTCCACCCGTAAGGATGGTGTAGCATCCCATGGAAGGTATGTTATCTTTTATGAACTTGTTTCTTTCCAATTAATCTGAATTTCCCGAATTGGATGCATGATTTGTTTTCCTTACAACTCAGGCTTCATTAATATTGTAAATTTTAGCCTTTGATTCTACGGTTTACCACATTTTTTTGCAATTGAGGTTCACCATAAAGAATATTCCTTTTTTTTCTTAGCATGGTTATGGTATTACTCATTCAGCTAGCAAGCTTGTTAAATTTTGGATTTTTCTTACCTGTATTTGTGTTCTTCTTTAATTTTGTTTTAGCAGATTATCAAGCCAAGATGGTCGAAAGAAGAAAAAAGAGCACTTGGGAAGTCGCTTGTCTAGGAAGACACCTCAAAAGCTTCATGTTGCTGATAGAGCTTCTGATATCAGGATCAGCGCACCCATTAGTGCTCCTACAACTCCTTATGCAAGTCCTGGAGTCAGTCCACTAAAAGCTGGGGATCTTTTAAATCATAATTACATGGCATTCCCTGGTGCTTTTCAAGT</genome_strand>
        <mrna_strand>GCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCTGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGGAGAGGATTCTTCCACTCGTAAGGATGGTGTAGCATCCCATGGGAG........................................................................................................................................................................................................................................................................................ATTATCAAGCCAAGATGCTCGAAAGAAGAAAAAAGAGCACTTGGGAAGTCGCTTGTCTAGGAAGACACCTCAAAAGCTTCATGTTGCTGATAGAGTTTCTGATATCAGGATCAGTGCACCCATTAGTGCTCCTACAACTCCTTATGCAAGTCCTGGAGTCAGTCCACTAAAAGCTGGGGATCTTTTAAATCATAATTACATGGCATTCCCTGGTGCTTTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619087" ref_strand="+" ref_description="SGN-E619087 [69772]">
      <seq>gcagtcagttatgcagacagatactaccactgatctcgcctttgccactgacatatggagtttgggttgtacagtaattgaaatgctgaacggcagaccaccttggagtgaatatgaagcagctgcagccatgttcaaggttctaaaagatacgcctccaataccggaaacattatcacctgaagggaaagatttcttgcgctgttgtttctgtaggaacccagcggagaggccctcggccagcatgttattagagcatcgatttatgagagtctctcatcagccagatgtaccttctttcatcaaaccagttggtgtgatacgagttaaagaaaagttaaattctcaaaaagagcagacaacatacaatcttgaccaaaggcgtttatcgctagagaggtagctcttaaaaaaactgtcaatggaagggaaaattagattccaaatggactgcttatgcgaacacattcatgagatggacatttactcttccgtgcaattgggacaggccagctgtgcatcattgaaattccaacttaatattggagccccatcatttcgctcgttcaaatcccctatggtcctgtcctcatttaatccccagcctgctcggtgtatagcactattgcaaatgtaaagtccttgccaaaactgggtgcaactacaaaatctcaactgattttgggatggaagtagcagtcattcttttgggtttctctttcaacgagagctgaacttgtgaatacaatggagacctctaaaattgtgctgtgtagatagcttgaaaccgaaaactaagttggagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="28254" stop="30668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28554" g_stop="28674" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28675" i_stop="29595" i_length="921">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29596" g_stop="29805" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="331" r_length="210" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29806" i_stop="29905" i_length="100">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29906" g_stop="30368" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="808" r_length="477" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E619087" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28554" e_stop="28674"/>
          <exon e_start="29596" e_stop="29805"/>
          <exon e_start="29906" e_stop="30368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTCAGTTATGCAGACGGATACTACCACTGATCTCGCCTTTGCCACTGATATATGGAGTTTGGGTTGTACAGTAATTGAAATGCTGAACGGCAGACCACCTTGGAGTGAATATGAAGCAGTAAGGACTTTGATTTGCTCATGCTTAGCTCACACATTATTTTTCTTTTCCTCATGCTTAGCTCACATGTAATCTTGATTGAGATGCGATTATTTTGCATGCTGATATGCTCCCTTAGATTCATGGGGTCTTCAACAAGTATGGCCCTTTTTTATGAATACTTTTCTTGCAACCCTATCTCTTAGGGTGTGGTGGAGATTTTCATGTGGTAGTAATGATGCTAAATAAGACTGATGCCACTATATTTTGCATTGTGTGTTGGAGATTTTTTGATTTCACTACACTTAAGTTGATGTGTTTCGTATTGAATGGATCCGTATATTTTGCATTGTGTCTAGTATGTTGTTTATGGTGTTTCGATTATCACGTGATTTATTGTTGTTTTGGCTCCTTTCTGCTACGCTCTTGCACTGTGTCCTTGTTATTTGCTATATCTCTTTATTGTCTTCTTCTTTTACCGGGATTTGTTGCACTTGAGCCAATGTTCTTTTGGAAGCAGCCTCTCTACCTCCACGAGGTAGTGGTAATGTCTGCGTCGTTCTATCCTCCCCAGACCTTACTTTGGGATTTCACTGGGTATATTGTTGTTGTATTAAGATCTGCAGTAAAGGCAGTGCAGATATACATTACTCTTTCTGCATAGAACCAACAAGTTAAGCAACTTGTCTAGTTGCCCCTCCTATTGTGTCGTTGCTCCAAAGCAGAGAATTCAAGAGCTTCTTTCATCCTGGAGTTTCCTCCAATCAGAAGTCAACACTTTGTTTATCTTACAAATGTTATCTCATAAACGGACGTTAAATCTTACAACACTTGATTCACTGGAATATTAGTTTGTCCCCTTTTTGCAGGCTTACTTTGTAAAGCAACTAGTCAAACCGACTATAAAGAGCAGCACCACATTAACCATATCCTTTTTTGCAGGCTGCAGCCATGTTCAAGGTTCTAAAAGATACGCCTCCAATACCGGAAACATTATCACGTGAAGGGAAAGATTTCTTGCGCTGTTGTTTCTGTAGGAACCCAGCGGAAAGGCCCTCGGCCAGCATGTTATTAGAACATCGATTTATGAGAGTATCTCATCAGCCAGATGTATCTTCTTTCATCAAACCAGTTGGTGTAATACGAGTCAAAGTAAGTACCTTTAATTCCTCTCCTCTCCAGCTCTTTTTCTTCCTTTCCTCTGTGCTTACAATGAGTTGTGATTTTCAATGCAATAATATAACTTTAACAGGAAAAGTCAAATTCTCAAAAAGAGCAGACAACATACAATCTTCACCAAGGGCGTTTATCGCTAGAGAGGTAGCTCTTAAAAAAAACTGTCAGTGGAAGGGACAATTAGATTGCAAAGAGACTGCTTATGCGAACACGTTCATGAGATGGACATTTATTCTTCTCTGCAATTGGGACAGGCCAGCTGTGCATCATTGGAGTTCCAACTAAATATCGGAGCCCCATCATTTCGCTCGTTCAAATCCCCTATGGTCCTGTCGGCATTTAATCCCCAGCCTGCTCGGTG--TA--A--AGT-C--AT-T---G-CC-AACCAAAACTGGGTGCAACTACAAAATCTCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTTGGTTTCTCTTTCAACGAGAGCTGAACTCGTGAATACAATGTAAACCTCTATATATGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCA</genome_strand>
        <mrna_strand>GCAGTCAGTTATGCAGACAGATACTACCACTGATCTCGCCTTTGCCACTGACATATGGAGTTTGGGTTGTACAGTAATTGAAATGCTGAACGGCAGACCACCTTGGAGTGAATATGAAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCCATGTTCAAGGTTCTAAAAGATACGCCTCCAATACCGGAAACATTATCACCTGAAGGGAAAGATTTCTTGCGCTGTTGTTTCTGTAGGAACCCAGCGGAGAGGCCCTCGGCCAGCATGTTATTAGAGCATCGATTTATGAGAGTCTCTCATCAGCCAGATGTACCTTCTTTCATCAAACCAGTTGGTGTGATACGAGTTAAA....................................................................................................GAAAAGTTAAATTCTCAAAAAGAGCAGACAACATACAATCTTGACCAAAGGCGTTTATCGCTAGAGAGGTAGCTCTT-AAAAAAACTGTCAATGGAAGGGAAAATTAGATTCCAAATGGACTGCTTATGCGAACACATTCATGAGATGGACATTTACTCTTCCGTGCAATTGGGACAGGCCAGCTGTGCATCATTGAAATTCCAACTTAATATTGGAGCCCCATCATTTCGCTCGTTCAAATCCCCTATGGTCCTGTCCTCATTTAATCCCCAGCCTGCTCGGTGTATAGCACTATTGCAAATGTAAAGTCCTTGCCAAAACTGGGTGCAACTACAAAATCTCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTGGGTTTCTCTTTCAACGAGAGCTGAACTTGTGAATACAATGGAGACCTCTAAAATTGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539278" ref_strand="+" ref_description="SGN-E539278 [TUS-58-P7]">
      <seq>ctcaactgattttgggatggaagtagcagtcattctttttggtttctctttcaacgagagctgaactcgtgaatacaatgtaaacctctatatatgtgctgtgtagatagcttgaaaccgaaaactaagttggagccagtaggtgctctggcttgttgtcaatattaacacctcgagaggaacataggtttattatcatccagggaagttttttcctgctgaccttggagtttagaagtagattttctgtaatgacttccaaagcaggagattcaataataatcaaaagaaaatgaaatgctttgacaaattatacaattctttactgaatctcacaatcatgtctactggttttgtttgtatctcatgattgcttatattgcaacttagtggctatatttttcagtgtgtttaaaaaaaaaaattaacaaacaaaataaatagtaaaaaatgaaaaaaaaaaaaacctcgagactagttccagctccaaaactcaaagttcttaaatccaaatcttaaccataatgtcgaacttcgccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="29931" stop="68647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30231" g_stop="30644" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30645" i_stop="31840" i_length="1196">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31841" g_stop="31861" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="434" r_length="20" r_score="0.857"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31862" i_stop="32186" i_length="325">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32187" g_stop="32236" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="481" r_length="47" r_score="0.640"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32237" i_stop="32927" i_length="691">
            <donor d_prob="0.000" d_score="0.64"/>
            <acceptor a_prob="0.458" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32928" g_stop="32975" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="527" r_length="46" r_score="0.583"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32976" i_stop="33283" i_length="308">
            <donor d_prob="0.932" d_score="0.58"/>
            <acceptor a_prob="0.614" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33284" g_stop="33297" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="541" r_length="14" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E539278" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30231" e_stop="30644"/>
          <exon e_start="31841" e_stop="31861"/>
          <exon e_start="32187" e_stop="32236"/>
          <exon e_start="32928" e_stop="32975"/>
          <exon e_start="33284" e_stop="33297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTTGGTTTCTCTTTCAACGAGAGCTGAACTCGTGAATACAATGTAAACCTCTATATATGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCAGTAGGTGCTCTGGCTTGTTGTCAATATTAACACCTCGAGAGGAACATAGGTTTATTATCATCCAGGGAAGTTTTTTCCTGCTGACCTTGGAGTTTAGAAGTAGATTTTCTGTAATGACTTCCAAAGCAGGAGATTCAATAATAATCAAAAGAAAATGAAATGCTTTGACAAATTATACAATTCTTTACTGAATCTCACAATCATGTCTACTGGTTTTGTTTGTATCTCATGATTGCTTATATTGCAACTTAGTGGCTATATTTTTCAGTGTGTTAAATTTCATCATGGTCTATATTATTTTGAGCTCAAAAACAAAGAAAATGAATTGATGAAACACTTTATTCATTAACAAATTGAACATTATATAGTGAGAATGACACAAAACAAGCCCAAATTATTGTTCCACTTTACTACTTACTAGAACCTTGCTTTATAGCTGAGGTGGAAAGTTGGGTCAACAGAAAAGGGAAAAACGTCAATGAAAAAAATGATAGAATAAAGTATATCAAGTAATTAAATATTTCCATATTAGTTGAAAGTCAGAAAATTGAAAGACTTTGATCCTCTTACCATATATTTAGCCCTCATCCAACCAAACAAACTTCCCCCAATCAATGCCCTTTCATTTTGCCCTACCATCTCCTTTCAATAATCCAATAAACAAAACCTTCATCTTGTGTGTGTGTGTGAGAGAGAGAGACAATAGAAATGGATCCACCACAGGTAGAGACCATGGACATCTCCAGCAAAAGTTATCCCCCAATTGAAGATGAACAGGACAAAATAGTTGACCAGTGGTAATTTTGTTTCCCTTTTTGCCAATTTGCCCTGTTTTCTCCGACTATTTCTGTTGCTATATTCTACGAGAGCCATTTGGTTTAACTCTTTGATCTTTTGGTTGTGTTTCTGCAGTTGTTCTTGCTTTTACGACTGTACTAATTGCTTGTTGGACTACTTGTGCTGCTATGATTTCTGGTGTTCTTAGGGCTACACATTATATAACTACTCTCTAGAATGGAACTTGTAGTTATGTTCTTTCGCTTTTGCACTGCATTACTTCATTTAGATCAAAGTTATTTTTTATCCATATGTTCTAATTAGAATTTGAGACGGTCAATGTATTCTTCATTGTCATCTTTTTCCAATTAAATATATGGTCCATAACATAGTGTGTTCAACTAAAACTCTTTTCTTCCAATCCTTCTCTATTATTTAGGCATCCCTATCAACTCAATTGATTCGCATTCACGAGAAAACATGCAACTTTTCTCTTTGTTACCAGAGAATATGTTTGTTTACGTTGCCGTTATAAGTTGTTCACGCTTTTAAGACCGTAGTCTCTACTGATATGAGAGACTGCCTCATTTTGCATGCAATCGCTCCTAATAAATAAAATTCATATTGAGGCACTATATCATGTTCTCTTTTAAGAGATTCAAGCCTATGGATTATTTGTGTCGTATTTGGAGAAGAAAAAAAAAATTAATCTCACAGCAACCTTATGAAACTTGACCCTTGAAGTAATACATTTCCTTAGTTTGTTTTTACTTATATATTATAGTAAAAATAAATCTTGATTTTACTTGTCGAATATATTAAAAGAATGACAATATGGGTATTACGGCAAAATATGAACTTTATGTGTTATTTCTTAAAGACCATGTAAAATTCATTTTGAACAAGTTAAAGTGAGGGAGTATCATTAAGCAAGAGGCTTGGGGTTGTGGATAATATATGTAGCAAGGATTAAGTATACGAATGTACATATATTTTAAGACTTAAAGAGACATGACAGAGGCTTAAAATTTTATATAGTCTAAATTAATAACTAGCAGATTGGAAAAAAAAAATTATCCAGAAAAAAGATAATACAAAAATACATTATAACAAACTGGCAAAGTAACCACTGGACATTTTTATTGAAACAACAATATCGATCAGGCAGCAATAAAGTCTTGTGATTTTGGTTTTGAACTTTTATTCAGTACACAAGCTACCAAATCTCTTTACAATTTGAAATACGTTTGGTGGCCAAAAAATGAAAAATTCATGTCCAAATCAGAGGACAACACTAATAACATTTTTTTTTAAAAAAAAAATATGCGTCTAATCGTGTGCCGGCACACCAATACGCACCAGTATACTTGGTGTTTGGGCTTCGCAGTGGACTATCACATTGTATGGTAGTTGACTTCAACGGGTGGAGTTAGATAAGGTCGAGAGGTTAAGAATATCTTTTATGTATATATATTAGGTGTTGAAAGCATCTTTTATATATATTTTTCGTTCAAACTTTCCTTGATGAAAAATTACAATGCTTATATATAGTTAAAATATTTTTTTATGTATATATACTTAGATTTCGAAAACGTCTTTTATATATACTTCTTCATATTTTGACTTTGCGTTGACTACTAGCGAAGTTGATATGGATAAAATGCATTTTAGTCAGTTTTAAAAGAATTAGATATGAGACAAGACAAAAATTGTAATTTAATTAATTATTCCCAATAGACGATTAATTTTGTTAACTGCACATCATTCATTGGATTAACATAGCACGGACCAAATGTCCAAATTCATTGTTCACGGATGATGACTAGAATTGCACTATTTGAAAATGTGCTACTCCTTTTTATAATATCGTAATACTTAGCTTTATCTAAGTGCAGACCAAGTTATAGAAGAGGATAAATCAATCAACGTTTCAATCACATTCAGATTTGTATACTTTCAACTAGGAGGTAGAGTATGACCTCGGTTCAGCCGAGTTCATCAGCTTTGGTTCAAACATCATATTTGTCTTAAAAAAATTTAAATCATTAATTTATAACTCAGTAACTTACGAAGACTAGAATTCAAAATTCATATTTTCAAATCCTGACTTCACCTCTGACGATCATTTGTTTTATAAGACGATTTAAGAAGT</genome_strand>
        <mrna_strand>CTCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTTGGTTTCTCTTTCAACGAGAGCTGAACTCGTGAATACAATGTAAACCTCTATATATGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCAGTAGGTGCTCTGGCTTGTTGTCAATATTAACACCTCGAGAGGAACATAGGTTTATTATCATCCAGGGAAGTTTTTTCCTGCTGACCTTGGAGTTTAGAAGTAGATTTTCTGTAATGACTTCCAAAGCAGGAGATTCAATAATAATCAAAAGAAAATGAAATGCTTTGACAAATTATACAATTCTTTACTGAATCTCACAATCATGTCTACTGGTTTTGTTTGTATCTCATGATTGCTTATATTGCAACTTAGTGGCTATATTTTTCAGTGTGTTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAATTAA-CAAACA.....................................................................................................................................................................................................................................................................................................................................AAATAAAT-AGTA-AAAAAT-GAAAAAAAAAAAAACCTCGAGACTAGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-GCTCCAAAACTCAAAGTTCTTAAATC-CAAATCTTAACCATAATG....................................................................................................................................................................................................................................................................................................................TCGAACTTCGCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284012" ref_strand="+" ref_description="SGN-E284012 [cLER-13-A23]">
      <seq>tcaactgattttgggatggaagtagcagtcattctttttggtttctctttcaacgagagctgaactcgtgaatacaatgtaaacctctatatatgtgctgtgtagatagcttgaaaccgaaaactaagttggagccagtaggtgctctggcttgttgtcaatattaacacctcgagaggaacataggtttattatcatccagggaagttttttcctgctgaccttggagtttagaagtagattttctgtaatgacttccaaagcaggagattcaataataatcaaaagaaaatgaaatgctttgacaaattatacaattctttactgaatctcacaatcatgtctactggttttgtttgtatctcatgattgcttatattgcaacttagtggctatatttttcagtgtgttaaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="29932" stop="30945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30232" g_stop="30652" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E284012" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30232" e_stop="30652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTTGGTTTCTCTTTCAACGAGAGCTGAACTCGTGAATACAATGTAAACCTCTATATATGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCAGTAGGTGCTCTGGCTTGTTGTCAATATTAACACCTCGAGAGGAACATAGGTTTATTATCATCCAGGGAAGTTTTTTCCTGCTGACCTTGGAGTTTAGAAGTAGATTTTCTGTAATGACTTCCAAAGCAGGAGATTCAATAATAATCAAAAGAAAATGAAATGCTTTGACAAATTATACAATTCTTTACTGAATCTCACAATCATGTCTACTGGTTTTGTTTGTATCTCATGATTGCTTATATTGCAACTTAGTGGCTATATTTTTCAGTGTGTTAAATTTCATC</genome_strand>
        <mrna_strand>TCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTTGGTTTCTCTTTCAACGAGAGCTGAACTCGTGAATACAATGTAAACCTCTATATATGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCAGTAGGTGCTCTGGCTTGTTGTCAATATTAACACCTCGAGAGGAACATAGGTTTATTATCATCCAGGGAAGTTTTTTCCTGCTGACCTTGGAGTTTAGAAGTAGATTTTCTGTAATGACTTCCAAAGCAGGAGATTCAATAATAATCAAAAGAAAATGAAATGCTTTGACAAATTATACAATTCTTTACTGAATCTCACAATCATGTCTACTGGTTTTGTTTGTATCTCATGATTGCTTATATTGCAACTTAGTGGCTATATTTTTCAGTGTGTTAAACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449180" ref_strand="+" ref_description="SGN-E449180 [cSTS-5-J23]">
      <seq>gaaattccagagggagcagatgatggcacaactaacttctttaaagatggtgatacttaccctgattggccaatagaccttgacgtgaaaccagacgagcttgcttggtggataaatgttgttgactgtatcaaagcctttggcaatgaacatttcaagaaggaagactataagatggctatcagaaagtacaggaaggctgttcgttataccgatttatgctgggaaaaggaagacattgatgaagtaaaaagcgagtatttgaggaagacaaagtcccagatacttgcaaatagttctgcctgtaaactgaagttaggagatctaactggagcattgatagatgctaatgatgcaatttatgatggagaagacaatgtcaaagctttttaccgccaaggccaggtatatatggcaatgaatgctatagatgcagcggctgaaagttttaagaaggccctgcagttagagccaaacaatggggggataaagaaggagctggctgctgcaatgaagaagattgcttataaactagagcaggagaagaagggttatgctaaaatgtttcagtaaaatttccagtgttcacaatagaagtatagtggttcaggttaacttttgggcctcaaaacagctagaatcangatttgcttctcatggagtacaaaaacgaagggtttgttctcaacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="46540" stop="51148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46840" g_stop="46998" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46999" i_stop="47283" i_length="285">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47284" g_stop="47371" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="247" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47372" i_stop="47465" i_length="94">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.375" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47466" g_stop="47518" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="300" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47519" i_stop="48484" i_length="966">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48485" g_stop="48589" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="405" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48590" i_stop="49547" i_length="958">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49548" g_stop="49623" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="481" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49624" i_stop="50199" i_length="576">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50200" g_stop="50237" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="519" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50238" i_stop="50379" i_length="142">
            <donor d_prob="0.923" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50380" g_stop="50444" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="584" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="50445" i_stop="50568" i_length="124">
            <donor d_prob="0.738" d_score="0.98"/>
            <acceptor a_prob="0.742" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50569" g_stop="50628" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="644" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="50629" i_stop="50799" i_length="171">
            <donor d_prob="0.846" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="50800" g_stop="50848" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="693" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E449180" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46840" e_stop="46998"/>
          <exon e_start="47284" e_stop="47371"/>
          <exon e_start="47466" e_stop="47518"/>
          <exon e_start="48485" e_stop="48589"/>
          <exon e_start="49548" e_stop="49623"/>
          <exon e_start="50200" e_stop="50237"/>
          <exon e_start="50380" e_stop="50444"/>
          <exon e_start="50569" e_stop="50628"/>
          <exon e_start="50800" e_stop="50848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCCAGAGGGTGCAGATGATGGCACAATTAACTTCTTTAAAGATGGTGATACTTACCCTGATTGGCCAATAGACCTTGACGTGAAACCAGATGAGGTTGCTTGGTGGATAAATGTTGTTGAACGTATCAAAGCCTTTGGCAATGAACATTTCAAGGTACTAGATTAATGTATATTTCCTGTTTGTTTCAAGTATACCTCGTGTTGTTATATAAGTTCACACATATATGTTTCCAAAAGTAAGCTTGGATTGATAGCTTTTTCTTTACATAAAATAAGATCTACTGCAAAAAATAACTAAAGAAATAAGATGAGCGAACAATGTAACACCATTTCTTCTCCACTTTTCTGTAGTTTTTTATTCATGGGCTTAGACTTTCTTTGAAAATTTTATGTATTTCAATATGTGATTGTATATCATCTTTGTATTACTCATGGGCAGAAGGAAGACTATAAGATGGCTATCAGGAAGTACAGGAAGGCTGTCCGTTATACCGACTTATGCTGGGAAAAGGACGACATTGATGAAGGTAAATTTTCTAAGTGCAGCTATAAATGACTATCTGATTTGCTTTCTCATAACTAGGACATCTTTCTGAAGGAATTATTTTCCTCATTACACAGTAAAAAGCGAGTATTTGAGGAAGACAAAGTCCCAGATACTTGCAAATAGTTCTGTAAGTTCTCCTGAATTCTCTTGCACCATTTGGTCTTACGGAATGATTTTCTTTCTGTTAGAATATTGAAGGCCTTAGTAGGACTTTCAGTTACATAATATAAGAACTATTTCCTGCTTTATGGTGTGAACATATCCCGAGGACGTAGTAACTTTCCTGAAGAAATCAGCTTTGTTAATGTTTCTTCCATATAAATAAATAATAAATAACCTTGTTTTAGTCTATACATTTTCGCCATCAATGTCTATTTACATTGAAGCTAAGTTACTCGGACTCCGCAAAATAGGTGCCGTAGTTAGGGTGTGGGACCTGTTCGGATCCGGTCAAACGAGATCGGGTGTGTTGACCAACAATTTAGAGAAGAAATTGAATTTTTGATATCTCAAAAGTAAAGATTTGAATAGATCGGAAACAAATGCCTTCAATTTTTCTGCTATATAATGATTTATACTAGTCCTTTGTGTCCTTTGAAGGTTTTTTCTTGATAAATTAGAGTAATATACCGTCAAGAAGTTTCTAGAATCTTCCATTTTATCAAAGCTCTCGTGCTTAGCACATGTTGGTGTATGAATTTGTGAGAGAGAAGGGATGCAGCGCCGTTTTGGAACTGAACTAGGGTTCTTCATCGTTTTGTTCTTAGGCTGCTTTGTTCTGTACGTGAATGGAGAAGAGGGGAACACGGGGTTTGGAGGAATAGGGTGTGGGCCAGATTTGGTTTTGAATGTTGGGCCAGGTCCATAACATGAGTGAGACCAAGTCCCTTGGAGTCTTCTAATCAAAATTAGAGTATTATTTAAATGAAAAATAATAACTTAAAATAGAGTATTATTGAATCAAAGTTAAACCAGGTCCCTTTGACGGTATATTATAAGTTTTCCTCACGTATGCATATTTAGACTTTGTTCTTGTGACTGTAGCATTTCCTTTTCTTTTGCTCCGCAAAATCTTCTTAACATTCTTGTTCAGGCCTGTAAACTGAAGATAGGAGATCTAACTGGAGCATTGATAGATGCGAATGATGCAATTTATGATGGAGAAGACAATGTCAAAGCTTTTTACCGCCAAGGCCAGGTTGGTGTGTTGAGCTATAATATAGTTCAAGTGGTTAGATTTCCTGACAAAAGAAAGCCTGACTTGATTTGTAGAAGGGCAGCCAACAGTGAATAGCATATAGAATGATCTACTGCACAACCACAATATTAAATGATAAAAAGCACCTGTAACATCATTCTCCTCAGTGTCCTTGGACTTAAAAGTCTTGAGTGTAAAGAATAACTTACAATGTACTTTCCTATCTTCATCTTCCATAGAGCTAAACAAACTTCTATTTCTTTTGCATTAAGATTGTCCACCGACCTTGTTTTTCTTTCTAGTCTGGAATGATTATTTTCTGTCATGATTAAGGTGATTGATTAGGCTTCACTAGGATACAAACTTTGCGCCTTAAGTTCCTTTCTCAAGCTTGTCTCACGTTTTATTAGTTCCTTTGGTGTTGGATTATCAGTTTGCTATGGAATTTAATTCAGTTAGATAAACACAAGTACAGCTCCTGTCAACTGCATGTCATGCATCCTCTAATCCATTGAACAGAACTTACACTTACTTTCAAACTTTAAATTTACACAAATGTTGGCATATGAATCTGAGACCTGAAGACCTTCTACTAATCCTCATCTTTATTCTCATTAAACAGCCCTTTGTATTATTATATTCAGGAGAAGCGTTTGGTCATAGCAATATCTCTCCTGTATTCTTCGAATCCCAAAGGAGGCAAAAAGACTAGATAATTTTTTTCCATCTGTCCAAGCCATGGTAGATAGAGTTACCCTGTACTTGCCTTAGTGGGAGGCGGTTGATATCTTATTGAATTAGTCAAGGTGTGGGCTATCGAGCCGGACACCATGGTTCTAAAATATTTTACTTGATGGTGTAGGATTACTGATTCACTTTTACCTTATTGTCTTCATACTTCACTATACGGAATCTTATACATATCCAAAACATTGAACCATCATTTTCTCTATTTCAGGTATATATGGCAATGAATGCTATAGATGCAGCAGCTGAAAGTTTTAAGAAGGCCCTGGAGTTAGAGCCAAACAATGGTTAGTGAAGTATAAAGAGTATATTTTTCTTCTTTGACATTTTAAGGGAAGAAACTCTGGCAAATGTTGAAGTATAAAGAGTATATTTTTCTTCTTAATTAACGCATGTGCTGCCGTTCCTTTTTTCCTTTTTCTGCATTATTTCCTGGGCTACCTGTATACTCTAAGTTGTATTAGATGATTCTCTGGAGCCAAACAAGGTTGCTGTCTTTAGCTGTGAATCTCAGGCTTAGTAACTTGGATATCCAAACTTGCATATAGAAGTCCTTTTCATCTGGCAATGGAACTTTTAATCCATAAAAGGAGAAGTAGCAGTTGAGAAAGCGTGTTCATTATGTTTTGCCTAAACTGATTATATAAAAGACTCAGAGATGCTCATAGAGTTCTCACTGGAATTTCCGATTTGTACCCAAAGTGTGGTACACTTCGCTCCAACCCACACTCCCTACCTCATAAAAGTTCACATTAAACTCTGTTTGACTGGTTATATTTTGTACGAATAAAGGAAATAATATTATTCACCTCTAGTCTTAGAGTATCAGCCCCGGTAACCTTTTCTTACATTTACTCTTTCAGGGGGGATAAAGAAGGAGCTGGCTGCTGCAATGAAGAAGGTTAGTCATTATCAGATCAAAATATTTGATCCAACATCTTCACATGAACGTAATACATGTTCTCTAATTTTCTTTCTCAGAAACTACTCGTTCTGTAGTTTCAAAAACTACATTTTCTTTAATTTGTTAACAATTATGACAGATTGCTTATAAACTAGAGAAGGAGAAGAAGGGTTATGCTAAAATGTTTCAGTAAAATTTCCAGTGGTATGCTGAACGCTTTTTCAAATTTCAACCTGCAATAATTTTTTCATTATCCAAAATTTATGATGCTCTGAGATATCAAATGTGGCTGCTACTAATGCTTGTTAGTTCAATCTGTTTGGCACAGTTCACAATAGAAGTATAGTGGTTCAGGTTAACTTTTGGGCCTCAAAACAGCTAGAATCAGGTATTTTGCGCCCACGTCATCTTCTCTCTCTATTTTAGCCTGTCAGATCAATCTGTTATGTCTTATCTTGTAGGAGTAAGAGAAACTTTGGTAGTTTGGTACATCAATTTCTTGTATATCCTTCCATCTCATTGATCCTTTTTTTCCTTTCTACATTTTGAGTTCTTGCAGGATTTGTTACTCATGGAGTACAAAAACGAAGGGTTTGTTCTCAACTTCT</genome_strand>
        <mrna_strand>GAAATTCCAGAGGGAGCAGATGATGGCACAACTAACTTCTTTAAAGATGGTGATACTTACCCTGATTGGCCAATAGACCTTGACGTGAAACCAGACGAGCTTGCTTGGTGGATAAATGTTGTTGACTGTATCAAAGCCTTTGGCAATGAACATTTCAAG.............................................................................................................................................................................................................................................................................................AAGGAAGACTATAAGATGGCTATCAGAAAGTACAGGAAGGCTGTTCGTTATACCGATTTATGCTGGGAAAAGGAAGACATTGATGAAG..............................................................................................TAAAAAGCGAGTATTTGAGGAAGACAAAGTCCCAGATACTTGCAAATAGTTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTAAACTGAAGTTAGGAGATCTAACTGGAGCATTGATAGATGCTAATGATGCAATTTATGATGGAGAAGACAATGTCAAAGCTTTTTACCGCCAAGGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGGCAATGAATGCTATAGATGCAGCGGCTGAAAGTTTTAAGAAGGCCCTGCAGTTAGAGCCAAACAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGATAAAGAAGGAGCTGGCTGCTGCAATGAAGAAG..............................................................................................................................................ATTGCTTATAAACTAGAGCAGGAGAAGAAGGGTTATGCTAAAATGTTTCAGTAAAATTTCCAGTG............................................................................................................................TTCACAATAGAAGTATAGTGGTTCAGGTTAACTTTTGGGCCTCAAAACAGCTAGAATCAN...........................................................................................................................................................................GATTTGCTTCTCATGGAGTACAAAAACGAAGGGTTTGTTCTCAACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348888" ref_strand="+" ref_description="SGN-E348888 [cTOF-29-C15]">
      <seq>taagatggctatcaggaagtacaggaaggctgtccgttataccgacttatgctgggaaaaggacgacattgatgaagtaaaaagcgagtatttgaggaagacaaagtcccagataccttgcaaatagttctgcctgtaaactgaagataggagatctaactggagcattgatagatgcgaatgatgcaatttatgatggagaagacaatgtcaaagctttttaccgccaaggccaggtatatatggcaatgaacatttctcacttgactttaattctgcttattagtgggcattcttctgttgaatacaaaatatatagcctgaatatacctcaacgtgttttgtacagaaagtgaaagggaacttaatgcaggataaagtgtctttccatttataatataatgatatggatgccccaaactcggttatctatnggcttccgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="46995" stop="51383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47295" g_stop="47371" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47372" i_stop="47465" i_length="94">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47466" g_stop="47518" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="131" r_length="54" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47519" i_stop="48484" i_length="966">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48485" g_stop="48589" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="236" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48590" i_stop="49547" i_length="958">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49548" g_stop="49565" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="254" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49566" i_stop="50891" i_length="1326">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50892" g_stop="51083" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="447" r_length="193" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="458"/>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E348888" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47295" e_stop="47371"/>
          <exon e_start="47466" e_stop="47518"/>
          <exon e_start="48485" e_stop="48589"/>
          <exon e_start="49548" e_stop="49565"/>
          <exon e_start="50892" e_stop="51083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATGGCTATCAGGAAGTACAGGAAGGCTGTCCGTTATACCGACTTATGCTGGGAAAAGGACGACATTGATGAAGGTAAATTTTCTAAGTGCAGCTATAAATGACTATCTGATTTGCTTTCTCATAACTAGGACATCTTTCTGAAGGAATTATTTTCCTCATTACACAGTAAAAAGCGAGTATTTGAGGAAGACAAAGTCCCAGATA-CTTGCAAATAGTTCTGTAAGTTCTCCTGAATTCTCTTGCACCATTTGGTCTTACGGAATGATTTTCTTTCTGTTAGAATATTGAAGGCCTTAGTAGGACTTTCAGTTACATAATATAAGAACTATTTCCTGCTTTATGGTGTGAACATATCCCGAGGACGTAGTAACTTTCCTGAAGAAATCAGCTTTGTTAATGTTTCTTCCATATAAATAAATAATAAATAACCTTGTTTTAGTCTATACATTTTCGCCATCAATGTCTATTTACATTGAAGCTAAGTTACTCGGACTCCGCAAAATAGGTGCCGTAGTTAGGGTGTGGGACCTGTTCGGATCCGGTCAAACGAGATCGGGTGTGTTGACCAACAATTTAGAGAAGAAATTGAATTTTTGATATCTCAAAAGTAAAGATTTGAATAGATCGGAAACAAATGCCTTCAATTTTTCTGCTATATAATGATTTATACTAGTCCTTTGTGTCCTTTGAAGGTTTTTTCTTGATAAATTAGAGTAATATACCGTCAAGAAGTTTCTAGAATCTTCCATTTTATCAAAGCTCTCGTGCTTAGCACATGTTGGTGTATGAATTTGTGAGAGAGAAGGGATGCAGCGCCGTTTTGGAACTGAACTAGGGTTCTTCATCGTTTTGTTCTTAGGCTGCTTTGTTCTGTACGTGAATGGAGAAGAGGGGAACACGGGGTTTGGAGGAATAGGGTGTGGGCCAGATTTGGTTTTGAATGTTGGGCCAGGTCCATAACATGAGTGAGACCAAGTCCCTTGGAGTCTTCTAATCAAAATTAGAGTATTATTTAAATGAAAAATAATAACTTAAAATAGAGTATTATTGAATCAAAGTTAAACCAGGTCCCTTTGACGGTATATTATAAGTTTTCCTCACGTATGCATATTTAGACTTTGTTCTTGTGACTGTAGCATTTCCTTTTCTTTTGCTCCGCAAAATCTTCTTAACATTCTTGTTCAGGCCTGTAAACTGAAGATAGGAGATCTAACTGGAGCATTGATAGATGCGAATGATGCAATTTATGATGGAGAAGACAATGTCAAAGCTTTTTACCGCCAAGGCCAGGTTGGTGTGTTGAGCTATAATATAGTTCAAGTGGTTAGATTTCCTGACAAAAGAAAGCCTGACTTGATTTGTAGAAGGGCAGCCAACAGTGAATAGCATATAGAATGATCTACTGCACAACCACAATATTAAATGATAAAAAGCACCTGTAACATCATTCTCCTCAGTGTCCTTGGACTTAAAAGTCTTGAGTGTAAAGAATAACTTACAATGTACTTTCCTATCTTCATCTTCCATAGAGCTAAACAAACTTCTATTTCTTTTGCATTAAGATTGTCCACCGACCTTGTTTTTCTTTCTAGTCTGGAATGATTATTTTCTGTCATGATTAAGGTGATTGATTAGGCTTCACTAGGATACAAACTTTGCGCCTTAAGTTCCTTTCTCAAGCTTGTCTCACGTTTTATTAGTTCCTTTGGTGTTGGATTATCAGTTTGCTATGGAATTTAATTCAGTTAGATAAACACAAGTACAGCTCCTGTCAACTGCATGTCATGCATCCTCTAATCCATTGAACAGAACTTACACTTACTTTCAAACTTTAAATTTACACAAATGTTGGCATATGAATCTGAGACCTGAAGACCTTCTACTAATCCTCATCTTTATTCTCATTAAACAGCCCTTTGTATTATTATATTCAGGAGAAGCGTTTGGTCATAGCAATATCTCTCCTGTATTCTTCGAATCCCAAAGGAGGCAAAAAGACTAGATAATTTTTTTCCATCTGTCCAAGCCATGGTAGATAGAGTTACCCTGTACTTGCCTTAGTGGGAGGCGGTTGATATCTTATTGAATTAGTCAAGGTGTGGGCTATCGAGCCGGACACCATGGTTCTAAAATATTTTACTTGATGGTGTAGGATTACTGATTCACTTTTACCTTATTGTCTTCATACTTCACTATACGGAATCTTATACATATCCAAAACATTGAACCATCATTTTCTCTATTTCAGGTATATATGGCAATGAATGCTATAGATGCAGCAGCTGAAAGTTTTAAGAAGGCCCTGGAGTTAGAGCCAAACAATGGTTAGTGAAGTATAAAGAGTATATTTTTCTTCTTTGACATTTTAAGGGAAGAAACTCTGGCAAATGTTGAAGTATAAAGAGTATATTTTTCTTCTTAATTAACGCATGTGCTGCCGTTCCTTTTTTCCTTTTTCTGCATTATTTCCTGGGCTACCTGTATACTCTAAGTTGTATTAGATGATTCTCTGGAGCCAAACAAGGTTGCTGTCTTTAGCTGTGAATCTCAGGCTTAGTAACTTGGATATCCAAACTTGCATATAGAAGTCCTTTTCATCTGGCAATGGAACTTTTAATCCATAAAAGGAGAAGTAGCAGTTGAGAAAGCGTGTTCATTATGTTTTGCCTAAACTGATTATATAAAAGACTCAGAGATGCTCATAGAGTTCTCACTGGAATTTCCGATTTGTACCCAAAGTGTGGTACACTTCGCTCCAACCCACACTCCCTACCTCATAAAAGTTCACATTAAACTCTGTTTGACTGGTTATATTTTGTACGAATAAAGGAAATAATATTATTCACCTCTAGTCTTAGAGTATCAGCCCCGGTAACCTTTTCTTACATTTACTCTTTCAGGGGGGATAAAGAAGGAGCTGGCTGCTGCAATGAAGAAGGTTAGTCATTATCAGATCAAAATATTTGATCCAACATCTTCACATGAACGTAATACATGTTCTCTAATTTTCTTTCTCAGAAACTACTCGTTCTGTAGTTTCAAAAACTACATTTTCTTTAATTTGTTAACAATTATGACAGATTGCTTATAAACTAGAGAAGGAGAAGAAGGGTTATGCTAAAATGTTTCAGTAAAATTTCCAGTGGTATGCTGAACGCTTTTTCAAATTTCAACCTGCAATAATTTTTTCATTATCCAAAATTTATGATGCTCTGAGATATCAAATGTGGCTGCTACTAATGCTTGTTAGTTCAATCTGTTTGGCACAGTTCACAATAGAAGTATAGTGGTTCAGGTTAACTTTTGGGCCTCAAAACAGCTAGAATCAGGTATTTTGCGCCCACGTCATCTTCTCTCTCTATTTTAGCCTGTCAGATCAATCTGTTATGTCTTATCTTGTAGGAGTAAGAGAAACTTTGGTAGTTTGGTACATCAATTTCTTGTATATCCTTCCATCTCATTGATCCTTTTTTTCCTTTCTACATTTTGAGTTCTTGCAGGATTTGTTACTCATGGAGTACAAAAACGAAGGGTTTGTTCTCAACTTCTCATAGAGTACAAAAACTAACTGCGGTTATCAAAGTTTGAGCCGATTTCTCACTTGACTTTAATTCTGCTTATTAGTGGGCATTCTTCTGTTGAATACAAAATATATAGCCTGAATATACCTCAACGTGTTTTGTACAGAAAGTGAAAGGGAACTTAATGCAGGATAAAGTGTCTTTCCATTTATAATATAATGATATGGATGCCCCAAACTCGGTTATCTAT-GGCTTCCGCAAAA</genome_strand>
        <mrna_strand>TAAGATGGCTATCAGGAAGTACAGGAAGGCTGTCCGTTATACCGACTTATGCTGGGAAAAGGACGACATTGATGAAG..............................................................................................TAAAAAGCGAGTATTTGAGGAAGACAAAGTCCCAGATACCTTGCAAATAGTTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTAAACTGAAGATAGGAGATCTAACTGGAGCATTGATAGATGCGAATGATGCAATTTATGATGGAGAAGACAATGTCAAAGCTTTTTACCGCCAAGGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGGCAATGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTCACTTGACTTTAATTCTGCTTATTAGTGGGCATTCTTCTGTTGAATACAAAATATATAGCCTGAATATACCTCAACGTGTTTTGTACAGAAAGTGAAAGGGAACTTAATGCAGGATAAAGTGTCTTTCCATTTATAATATAATGATATGGATGCCCCAAACTCGGTTATCTATNGGCTTCCGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436675" ref_strand="+" ref_description="SGN-E436675 [STM-63-I12]">
      <seq>caaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaagaaaatgttggtcctgtcgttgggcactggtataggcaagcaggaagagaagtataatgctacagtggcttccagatgggggatgttaggttgggtgtacaacaatggtgccactcctttgatagatatctatggtgatgcaagtgctgatatggtagacatacatgtttccaccatgtttcagacccttggtagtgagaagaactacatcagaattcaggatgacaatttgacaggggaggctgcatctatggatattgcaacaacaaaaaacatggagacactagtacaaattggtaatgatctattgaagaagccaatttcaagggtcaacttagaaacaggccgatatgaaccagttgttggggaaggcaccaacgaagctgctatagtccgctttgctcagttgctttcagaagaacggaagctccgaataaactaaggaaatacttgtagattttttcacacaatttgttggacgattagaggattaatttgtattcttttaccttcaatagttaagcgcctaaatagtagaccatgttgtaatatgagaataaatatcccaagaggaaaataaatttatgtaattggtctgtttttttctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52396" stop="51034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52197" g_stop="52187" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52096" g_stop="51794" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="314" r_length="303" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51793" i_stop="51708" i_length="86">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51707" g_stop="51312" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="707" r_length="393" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E436675" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52197" e_stop="52187"/>
          <exon e_start="52096" e_stop="51794"/>
          <exon e_start="51707" e_stop="51312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAGGTAAGAATGACTGAGCTTGTCTTAGTATTTTCAAAATACATGCTGAAAATAAATCAGCTAACACTTCTCTGGTTTGATTGGTACAGGATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAACTAGTAAACCATGTTGTAATATGAGAATAAACATCCCAAGAAGAAAATAAAATTTATGTAATACTTCTGTTTTTTTTTCTCATG</genome_strand>
        <mrna_strand>CAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAAGAAAATGTTGGTCCTGTCGTTGGGCACTGGTATAGGCAAGCAGGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGTTAGGTTGGGTGTACAACAATGGTGCCACTCCTTTGATAGATATCTATGGTGATGCAAGTGCTGATATGGTAGACATACATGTTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGAATTCAG......................................................................................GATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACAACAAAAAACATGGAGACACTAGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATATGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTTGCTCAGTTGCTTTCAGAAGAACGGAAGCTCCGAATAAACTAAGGAAATACTTGTAG-ATTTTTTCACACAATTTGTTGGACGATTAGAGGATTAATTTGTATTCTTTTA-CCTTCAATAGTTAAGCGCCTAAATAGTAGACCATGTTGTAATATGAGAATAAATATCCCAAGAGGAAAAT-AAATTTATGTAATTGGTCTGTTTTTTTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436676" ref_strand="-" ref_description="SGN-E436676 [STM-63-I12]">
      <seq>aggcaagcaggaagagaagtataatgctacagtggcttccagatgggggatgttaggttgggtgtacaacaatggtgccactcctttgatagatatctatggtgatgcaagtgctgatatggtagacatacatgtttccaccatgtttcagacccttggtagtgagaagaactacatcagaattcaggatgacaatttgacaggggaggctgcatctatggatattgcaacaacaaaaaacatggagacactagtacaaattggtaatgatctattgaagaagccaatttcaagggtcaacttagaaacaggccgatatgaaccagttgttggggaaggcaccaacgaagctgctatagtccgctttgctcagttgctttcagaggaacggaagctccgaataaactaaggaaatacttgtagattttttcacacaatttgttggacgattagaggattaatttgtattcttttaccttcaatagttaagcgcctaaatagtagaccatgttgtaatatgagaataaatatcccaagaggaaaataaaatttatgtaattgttctgttttttctaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52280" stop="51019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51980" g_stop="51794" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51793" i_stop="51708" i_length="86">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51707" g_stop="51321" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="572" r_length="385" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="593"/>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E436676" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436676" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51980" e_stop="51794"/>
          <exon e_start="51707" e_stop="51321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAGGTAAGAATGACTGAGCTTGTCTTAGTATTTTCAAAATACATGCTGAAAATAAATCAGCTAACACTTCTCTGGTTTGATTGGTACAGGATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAACTAGTAAACCATGTTGTAATATGAGAATAAACATCCCAAGAAGAAAATAAAATTTATGTAATACTTCTGTTTTTT</genome_strand>
        <mrna_strand>AGGCAAGCAGGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGTTAGGTTGGGTGTACAACAATGGTGCCACTCCTTTGATAGATATCTATGGTGATGCAAGTGCTGATATGGTAGACATACATGTTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGAATTCAG......................................................................................GATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACAACAAAAAACATGGAGACACTAGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATATGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTTGCTCAGTTGCTTTCAGAGGAACGGAAGCTCCGAATAAACTAAGGAAATACTTGTAG-ATTTTTTCACACAATTTGTTGGACGATTAGAGGATTAATTTGTATTCTTTTA-CCTTCAATAGTTAAGCGCCTAAATAGTAGACCATGTTGTAATATGAGAATAAATATCCCAAGAGGAAAATAAAATTTATGTAATTGTTCTGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377709" ref_strand="+" ref_description="SGN-E377709 [TUS-20-I18](-)">
      <seq>tgctcaaggcaaaacgcgacatttgatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaacaaaatgttggttctgtcgttgggcacgggtataggcaagcaagaagagaagtataatgctacagtggcttccagatgggggatggtaggttgggtgtacaacaatggtgccacccctttgatagatatttatggtgatgctagtgctgatatggtagacatacatacttccaccatgtttcagacccttggtagtgagaagaactacatcaggattcaggatgacaatttgacaggggaggctgcatctatggatattgcaacgacacaaaacatggagacactggtacaaattggtaatgatctattgaagaagccaatttcaagggtcaacttagaaacaggccgatacgaaccagttgttggggaaggcaccaacgaagctgctatagtccgcttcgctcagttgctttcagaggaaaggaagctccgaataaactaacgaaatacttgcagaaattttacacacaatttgttggacgattagaagattaatttgtattcttttacccttcaatagttaagcgcctaactagtaaaccatgttgtaatatgagaataaacatcccaagaagaaaataaaatttatgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52547" stop="51033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52247" g_stop="52187" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52096" g_stop="51794" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="363" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51793" i_stop="51708" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51707" g_stop="51336" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="735" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="736" polyA_stop="747"/>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E377709" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52247" e_stop="52187"/>
          <exon e_start="52096" e_stop="51794"/>
          <exon e_start="51707" e_stop="51336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAGGTAAGAATGACTGAGCTTGTCTTAGTATTTTCAAAATACATGCTGAAAATAAATCAGCTAACACTTCTCTGGTTTGATTGGTACAGGATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAACTAGTAAACCATGTTGTAATATGAGAATAAACATCCCAAGAAGAAAATAAAATTTATGTA</genome_strand>
        <mrna_strand>TGCTCAAGGCAAAACGCG-ACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAG......................................................................................GATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAACTAGTAAACCATGTTGTAATATGAGAATAAACATCCCAAGAAGAAAATAAAATTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405406" ref_strand="-" ref_description="SGN-E405406 [PPC-18-M15]">
      <seq>agggaaaccacgtacgtttgatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaagaaaatgttggtcctgtcgttgggcactggtataggcaagcaggaagagaagtataatgctacagtggcttccagatgggggatgttaggttgggtgtacaacaatggtgccactcctttgatagatatctatggtgatgcaagtgctgatatggtagacatacatgtttccaccatgtttcagacccttggtagtgagaagaactacatcagaattcaggatgacaatttgacaggggaggctgcatctatggatattgcaacaacaaaaaacatggagacactagtacaaattggtaatgatctattgaagaagccaatttcaagggtcaacttagaaacaggccgatatgaaccagttgttggggaaggcaccaacgaagctgctatagtccgctttgctcagttgctttcagaggaacggaagctccgaataaactaaggaaatacttgtagattttttcacacaatttgttggacgattagaggattaatttgtattcttttaccttcaatagttaagcgcctaaatagtagaccatgttgtaatatgagaataaatatcccaagaggaaaataaaatttatgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52541" stop="51033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52241" g_stop="52187" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52096" g_stop="51794" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="358" r_length="303" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51793" i_stop="51708" i_length="86">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51707" g_stop="51336" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="728" r_length="370" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="729" polyA_stop="748"/>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E405406" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405406" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52241" e_stop="52187"/>
          <exon e_start="52096" e_stop="51794"/>
          <exon e_start="51707" e_stop="51336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAGGTAAGAATGACTGAGCTTGTCTTAGTATTTTCAAAATACATGCTGAAAATAAATCAGCTAACACTTCTCTGGTTTGATTGGTACAGGATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAACTAGTAAACCATGTTGTAATATGAGAATAAACATCCCAAGAAGAAAATAAAATTTATGTA</genome_strand>
        <mrna_strand>AGGGAAACCACGTACGTTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAAGAAAATGTTGGTCCTGTCGTTGGGCACTGGTATAGGCAAGCAGGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGTTAGGTTGGGTGTACAACAATGGTGCCACTCCTTTGATAGATATCTATGGTGATGCAAGTGCTGATATGGTAGACATACATGTTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGAATTCAG......................................................................................GATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACAACAAAAAACATGGAGACACTAGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATATGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTTGCTCAGTTGCTTTCAGAGGAACGGAAGCTCCGAATAAACTAAGGAAATACTTGTAG-ATTTTTTCACACAATTTGTTGGACGATTAGAGGATTAATTTGTATTCTTTTA-CCTTCAATAGTTAAGCGCCTAAATAGTAGACCATGTTGTAATATGAGAATAAATATCCCAAGAGGAAAATAAAATTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377710" ref_strand="+" ref_description="SGN-E377710 [TUS-20-I18]">
      <seq>ttcccagtgcacagttttgagactaaggatgctcaaggcaaaacgcgtacatttgatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaacaaaatgttggttctgtcgttgggcacgggtataggcaagcaagaagagaagtataatgctacagtggcttccagatgggggatggtaggttgggtgtacaacaatggtgccacccctttgatagatatttatggtgatgctagtgctgatatggtagacatacatacttccaccatgtttcagacccttggtagtgagaagaactacatcaggattcaggatgacaatttgacaggggaggctgcatctatggatattgcaacgacacaaaacatggagacactggtacaaattggtaatgatctattgaagaagccaatttcaagggtcaacttagaaacaggccgatacgaaccagttgttggggaaggcaccaacgaagctgctatagtccgcttcgctcagttgctttcagaggaaaggaagctccgaataaactaacgaaatacttgcagaaattttacacacaatttgttggacgattagaagattaatttgtattcttttacccttcaatagttaagcgcctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52576" stop="51095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52276" g_stop="52187" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52096" g_stop="51794" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="393" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51793" i_stop="51708" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51707" g_stop="51395" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="706" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E377710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52276" e_stop="52187"/>
          <exon e_start="52096" e_stop="51794"/>
          <exon e_start="51707" e_stop="51395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAGGTAAGAATGACTGAGCTTGTCTTAGTATTTTCAAAATACATGCTGAAAATAAATCAGCTAACACTTCTCTGGTTTGATTGGTACAGGATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAAC</genome_strand>
        <mrna_strand>TTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAG......................................................................................GATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233071" ref_strand="+" ref_description="SGN-E233071 [cLED-6-O14]">
      <seq>ttcccagtgcacagttttgagactaaggatgctcaaggcaaaacgcgtacatttgatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaacaaaatgttggttctgtcgttgggcacgggtataggcaagcaagaagagaagtataatgctacagtggcttccagatgggggatggtaggttgggtgtacaacaatggtgccacccctttgatagatatttatggtgatgctagtgctgatatggtagacatacatacttccaccatgtttcagacccttggtagtgagaagaactacatcaggattcaggatgacaatttgacaggggaggctgcatctatggatattgcaacgacacaaaacatggagacactggtacaaattggtaatgatctattgaagaagccaatttcaagggtcaacttagaaacaggccgatacgaaccagttgttggggaaggcaccaacgaagctgctatagtccgcttcgctcagttgctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52576" stop="51214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52276" g_stop="52187" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52096" g_stop="51794" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="393" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51793" i_stop="51708" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51707" g_stop="51514" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="587" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E233071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52276" e_stop="52187"/>
          <exon e_start="52096" e_stop="51794"/>
          <exon e_start="51707" e_stop="51514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAGGTAAGAATGACTGAGCTTGTCTTAGTATTTTCAAAATACATGCTGAAAATAAATCAGCTAACACTTCTCTGGTTTGATTGGTACAGGATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTC</genome_strand>
        <mrna_strand>TTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAG......................................................................................GATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204604" ref_strand="+" ref_description="SGN-E204604 [cLEC-14-G17]">
      <seq>aaaagcaaatatctcaaagaatgctcaattatcagacgtttgccttagtacctcagccgcacccacttatttcccagtgcacagttttgagactaaggatgctcaaggcaaaacgcgtacatttgatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaacaaaatgttggttctgtcgttgggcacgggtataggcaagcaagaagagaagtataatgctacagtggcttccagatgggggatggtaggttgggtgtacaacaatggtgccacccctttgatagatatttatggtgatgctagtgctgatatggtagacatacatacttccaccatgtttcagacccttggtagtgagaagaactacatcaggattcaggatgacaatttgacaggggaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52646" stop="51384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52346" g_stop="52187" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52096" g_stop="51794" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="463" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51793" i_stop="51708" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51707" g_stop="51684" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="487" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E204604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52346" e_stop="52187"/>
          <exon e_start="52096" e_stop="51794"/>
          <exon e_start="51707" e_stop="51684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAGGTAAGAATGACTGAGCTTGTCTTAGTATTTTCAAAATACATGCTGAAAATAAATCAGCTAACACTTCTCTGGTTTGATTGGTACAGGATGACAATTTGACAGGGGAGGCT</genome_strand>
        <mrna_strand>AAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAG......................................................................................GATGACAATTTGACAGGGGAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202568" ref_strand="+" ref_description="SGN-E202568 [cLEC-6-L16]">
      <seq>acagtcatacctacttttgatatcaaacgtcttcaaccaataatcttcagtactgctgatgcaaaagcaaatatctcaaagaatgctcaattatcagacgtttgccttagtacctcagccgcacccacttatttcccagtgcacagttttgagactaaggatgctcaaggcaaaacgcgtacatttgatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaacaaaatgttggttctgtcgttgggcacgggtataggcaagcaagaagagaagtataatgctacagtggcttccagatgggggatggtaggttgggtgtacaacaatggtgccacccctttgatagatatttatggtgatgctagtgctgatatggtagacatacatacttccaccatgtttcagacccttggtagtgagaagaactacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52803" stop="51503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52503" g_stop="52444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52443" i_stop="52349" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52348" g_stop="52187" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="222" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52096" g_stop="51803" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="516" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E202568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52503" e_stop="52444"/>
          <exon e_start="52348" e_stop="52187"/>
          <exon e_start="52096" e_stop="51803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGATGTAAACTTCTATCCTAATAACATTCTTTATCTTTATCTTATTTTATATAGTTTCTTCTTATTTAATATAATTATTCAAAATTAATTTGTCTACAGGCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATC</genome_strand>
        <mrna_strand>ACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGAT...............................................................................................GCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206127" ref_strand="+" ref_description="SGN-E206127 [cLEC-29-H19]">
      <seq>catatacttgagaacaattattaattcaatattaggcaatcttacaatgaagcaaacgttgactaatacagtcatacctacttttgatatcaaacgtcttcaaccaataatcttcagtactgctgatgcaaaagcaaatatctcaaagaatgctcaattatcagacgtttgccttagtacctcagccgcacccacttatttcccagtgcacagttttgagactaaggatgctcaaggcaaaacgcgtacatttgatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaacaaaatgttggttctgtcgttgggcacgggtataggcaagcaagaagagaagtataatgctacagtggcttccagatgggggatggtaggttgggtgtacaacaatggtgccacccctttgatagatatttatggtgatgctagtgctgatatggtagacatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52870" stop="51545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52570" g_stop="52444" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52443" i_stop="52349" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52348" g_stop="52187" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="289" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52096" g_stop="51845" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="541" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E206127" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52570" e_stop="52444"/>
          <exon e_start="52348" e_stop="52187"/>
          <exon e_start="52096" e_stop="51845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGATGTAAACTTCTATCCTAATAACATTCTTTATCTTTATCTTATTTTATATAGTTTCTTCTTATTTAATATAATTATTCAAAATTAATTTGTCTACAGGCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACT</genome_strand>
        <mrna_strand>CATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGAT...............................................................................................GCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205794" ref_strand="+" ref_description="SGN-E205794 [cLEC-20-I5]">
      <seq>catatacttgagaacaattattaattcaatattaggcaatcttacaatgaagcaaacgttgactaatacagtcatacctacttttgatatcaaacgtcttcaaccaataatcttcagtactgctgatgcaaaagcaaatatctcaaagaatgctcaattatcagacgtttgccttagtacctcagccgcacccacttatttcccagtgcacagttttgagactaaggatgctcaaggcaaaacgcgtacatttgatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaacaaaatgttggttctgtcgttgggcacgggtataggcaagcaagaagagaagtataatgctacagtggcttccagatgggggatggtaggttgggtgtacaacaatggtgccacccctttgatagatatttatggtgatgctagtgctgatatggtagacatacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52870" stop="51547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52570" g_stop="52444" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52443" i_stop="52349" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52348" g_stop="52187" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="289" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52096" g_stop="51847" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="539" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E205794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52570" e_stop="52444"/>
          <exon e_start="52348" e_stop="52187"/>
          <exon e_start="52096" e_stop="51847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGATGTAAACTTCTATCCTAATAACATTCTTTATCTTTATCTTATTTTATATAGTTTCTTCTTATTTAATATAATTATTCAAAATTAATTTGTCTACAGGCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATA</genome_strand>
        <mrna_strand>CATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGAT...............................................................................................GCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233442" ref_strand="+" ref_description="SGN-E233442 [cLED-9-N13]">
      <seq>tcccagtgcacagttttgagactaatgatgctcaaggcaaaacgcgtacatgagatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcagcaaaatgttggttctgtcggtgggcacgggtataggcaagcgagaagagaagtataatgctacagtggcttacacatgggggatggcaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52575" stop="51622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52275" g_stop="52187" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52096" g_stop="51922" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="264" r_length="175" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E233442" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52275" e_stop="52187"/>
          <exon e_start="52096" e_stop="51922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTT</genome_strand>
        <mrna_strand>TCCCAGTGCACAGTTTTGAGACTAATGATGCTCAAGGCAAAACGCGTACATGAGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAGCAAAATGTTGGTTCTGTCGGTGGGCACGGGTATAGGCAAGCGAGAAGAGAAGTATAATGCTACAGTGGCTTACACATGGGGGATGGCAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206716" ref_strand="+" ref_description="SGN-E206716 [cLEC-31-G20]">
      <seq>catatacttgagaacaattattaattcaatattaggcaatcttacaatgaagcaaacgttgactaatacagtcatacctacttttgatatcaaacgtcttcaaccaataatcttcagtactgctgatgcaaaagcaaatatctcaaagaatgctcaattatcagacgtttgccttagtacctcagccgcacccacttatttcccagtgcacagttttgagactaaggatgctcaaggcaaaacgcgtacatttgatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaacaaaatgttggttctgtcgttgggcacgggtataggcaagcaagaagagaagtataatgctacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52870" stop="51648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52570" g_stop="52444" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52443" i_stop="52349" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52348" g_stop="52187" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="289" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52096" g_stop="51948" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="438" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E206716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52570" e_stop="52444"/>
          <exon e_start="52348" e_stop="52187"/>
          <exon e_start="52096" e_stop="51948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGATGTAAACTTCTATCCTAATAACATTCTTTATCTTTATCTTATTTTATATAGTTTCTTCTTATTTAATATAATTATTCAAAATTAATTTGTCTACAGGCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGT</genome_strand>
        <mrna_strand>CATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGAT...............................................................................................GCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209748" ref_strand="+" ref_description="SGN-E209748 [cLEC-52-K4]">
      <seq>tttcttttaacataacaatacacacttttctccccttctctttcaaatatcaaaaacacaaaactcttttttgttaggtaataactcaacatggggaggatggttcttatagctgcagcaatgactctttttgtaacccttcaagttttacaacctccattagtagtttctgccgccaccaaaggaaagacggtaaccgttttgagtatcgatggaggtggtattagaggcattattcctggaaccctacttgccttccttgaatctaaacttcaggaacttgatggaccaaatgcaagaattgcagattacttcgatgtagtagcaggaacaagcacaggtggattagtaacaactatgcttactgctcctaacaaggataatcgtcctttatatcaagcaaaagatatttccaatttctacatgcaacatggccctcaaatttttcctcaaagcaggcgtaacagctttgtgagaaggatcacaaatttgtttggaggaccaaagtatgatggcatatacttgagaacaattattaattcaatattaggcaatcttacaatgaagcaaacgttgactaatacagtcatacctacttttgatatcaaacgtcttcaaccaataaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="53771" stop="52157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53471" g_stop="53196" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53195" i_stop="52920" i_length="276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52919" g_stop="52738" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="458" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52737" i_stop="52628" i_length="110">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52627" g_stop="52457" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="630" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E209748" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53471" e_stop="53196"/>
          <exon e_start="52919" e_stop="52738"/>
          <exon e_start="52627" e_stop="52457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTAACATAACAATACACACTTTTCTCCCCTTCTCTTTCAAATATCAAAAACACAAAACTCTTTTTTGTTAGGTAATAACTCAACATGGGGAGGATGGTTCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAGGTATACCTATGCTACATATATACGTCATACGTTTTATTTCATATGACAGTTATTTGACTATACGCGCTGATCAGTACAAGTAAAAAGAAAGATATTCGCCATATATACTTGGAACTTATTATTTTAAGCATGTTATGACATTTCTATGACTATATATAACAGGAAAAATTAAATATCTAACTGTTGGATTAAAAAGGAAAATGTGTCGTATAAACTGAAACAGAAGAAATACTCGTAGATTACTTTTTTTCTCATGAATTTATTTGTGTATGCTAGGAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAGGTTAACAACAACAGTGAATTAATTACTCATAGAGTTTGTCTCTTTTTTCTTTCTAATTTTATGCTTTAATACTGAAGGCAAGTGTTTGTTTCATTATATATGTAATTCAGGCGTAACAGCTTTGTGAGAAGGATCACAAATTTGTTTGGAGGACCAAAGTATGATGGCATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAAT-AATCTT</genome_strand>
        <mrna_strand>TTTCTTTTAACATAACAATACACACTTTTCTCCCCTTCTCTTTCAAATATCAAAAACACAAAACTCTTTTTTGTTAGGTAATAACTCAACATGGGGAGGATGGTTCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAG....................................................................................................................................................................................................................................................................................GAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAG..............................................................................................................GCGTAACAGCTTTGTGAGAAGGATCACAAATTTGTTTGGAGGACCAAAGTATGATGGCATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203519" ref_strand="+" ref_description="SGN-E203519 [cLEC-15-I19]">
      <seq>tcttatagctgcagcaatgactctttttgtaacccttcaagttttacaacctccattagtagtttctgccgccaccaaaggaaagacggtaaccgttttgagtatcgatggaggtggtattagaggcattattcctggaaccctacttgccttccttgaatctaaacttcaggaacttgatggaccaaatgcaagaattgcagattacttcgatgtagtagcaggaacaagcacaggtggattagtaacaactatgcttactgctcctaacaaggataatcgtcctttatatcaagcaaaagatatttccaatttctacatgcaacatggccctcaaatttttcctcaaagcaggcgtaacagctttgtgagaaggatcacaaatttgtttggaggaccaaagtatgatggcatatacttgagaacaattattaattcaatattaggcaatcttacaatgaagcaaacgttgactaatacagtcatacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="53667" stop="52190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53367" g_stop="53196" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53195" i_stop="52920" i_length="276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52919" g_stop="52738" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="354" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52737" i_stop="52628" i_length="110">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52627" g_stop="52490" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="492" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E203519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53367" e_stop="53196"/>
          <exon e_start="52919" e_stop="52738"/>
          <exon e_start="52627" e_stop="52490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAGGTATACCTATGCTACATATATACGTCATACGTTTTATTTCATATGACAGTTATTTGACTATACGCGCTGATCAGTACAAGTAAAAAGAAAGATATTCGCCATATATACTTGGAACTTATTATTTTAAGCATGTTATGACATTTCTATGACTATATATAACAGGAAAAATTAAATATCTAACTGTTGGATTAAAAAGGAAAATGTGTCGTATAAACTGAAACAGAAGAAATACTCGTAGATTACTTTTTTTCTCATGAATTTATTTGTGTATGCTAGGAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAGGTTAACAACAACAGTGAATTAATTACTCATAGAGTTTGTCTCTTTTTTCTTTCTAATTTTATGCTTTAATACTGAAGGCAAGTGTTTGTTTCATTATATATGTAATTCAGGCGTAACAGCTTTGTGAGAAGGATCACAAATTTGTTTGGAGGACCAAAGTATGATGGCATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTAC</genome_strand>
        <mrna_strand>TCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAG....................................................................................................................................................................................................................................................................................GAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAG..............................................................................................................GCGTAACAGCTTTGTGAGAAGGATCACAAATTTGTTTGGAGGACCAAAGTATGATGGCATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207085" ref_strand="+" ref_description="SGN-E207085 [cLEC-30-N5]">
      <seq>aaaaacacaaaactcttttttgttaggtaataactcaacatggggaggatggttcttatagctgcagcaatgactctttttgtaacccttcaagttttacaacctccattagtagtttctgccgccaccaaaggaaagacggtaaccgttttgagtatcgatggaggtggtattagaggcattattcctggaaccctacttgccttccttgaatctaaacttcaggaacttgatggaccaaatgcaagaattgcagattacttcgatgtagtagcaggaacaagcacaggtggattagtaacaactatgcttactgctcctaacaaggataatcgtcctttatatcaagcaaaagatatttccaatttctacatgcaacatggccctcaaatttttcctcaaagcaggcgtaacagctttgtgagaaggatcacaaatttgtttggaggaccaaagtatgatggcatatacttgagaacaattattaattcaatattaggcaatcttacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="53720" stop="52222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53420" g_stop="53196" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53195" i_stop="52920" i_length="276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52919" g_stop="52738" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="407" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52737" i_stop="52628" i_length="110">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52627" g_stop="52522" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="513" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E207085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53420" e_stop="53196"/>
          <exon e_start="52919" e_stop="52738"/>
          <exon e_start="52627" e_stop="52522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACACAAAACTCTTTTTTGTTAGGTAATAACTCAACATGGGGAGGATGGTTCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAGGTATACCTATGCTACATATATACGTCATACGTTTTATTTCATATGACAGTTATTTGACTATACGCGCTGATCAGTACAAGTAAAAAGAAAGATATTCGCCATATATACTTGGAACTTATTATTTTAAGCATGTTATGACATTTCTATGACTATATATAACAGGAAAAATTAAATATCTAACTGTTGGATTAAAAAGGAAAATGTGTCGTATAAACTGAAACAGAAGAAATACTCGTAGATTACTTTTTTTCTCATGAATTTATTTGTGTATGCTAGGAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAGGTTAACAACAACAGTGAATTAATTACTCATAGAGTTTGTCTCTTTTTTCTTTCTAATTTTATGCTTTAATACTGAAGGCAAGTGTTTGTTTCATTATATATGTAATTCAGGCGTAACAGCTTTGTGAGAAGGATCACAAATTTGTTTGGAGGACCAAAGTATGATGGCATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATG</genome_strand>
        <mrna_strand>AAAAACACAAAACTCTTTTTTGTTAGGTAATAACTCAACATGGGGAGGATGGTTCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAG....................................................................................................................................................................................................................................................................................GAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAG..............................................................................................................GCGTAACAGCTTTGTGAGAAGGATCACAAATTTGTTTGGAGGACCAAAGTATGATGGCATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203476" ref_strand="+" ref_description="SGN-E203476 [cLEC-15-F19]">
      <seq>aacaatacacacttttctccccttctctttcaaatatcaaaaacacaaaactcttttttgttaggtaataactcaacatggggaggatggttcttatagctgcagcaatgactctttttgtaacccttcaagttttacaacctccattagtagtttctgccgccaccaaaggaaagacggtaaccgttttgagtatcgatggaggtggtattagaggcattattcctggaaccctacttgccttccttgaatctaaacttcaggaacttgatggaccaaatgcaagaattgcagattacttcgatgtagtagcaggaacaagcacaggtggattagtaacaactatgcttactgctcctaacaaggataatcgtcctttatatcaagcaaaagatatttccaatttctacatgcaacatggccctcaaatttttcctcaaagcaggcgtaacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="53758" stop="52437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53458" g_stop="53196" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53195" i_stop="52920" i_length="276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52919" g_stop="52738" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="445" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52737" i_stop="52628" i_length="110">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52627" g_stop="52617" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="456" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E203476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53458" e_stop="53196"/>
          <exon e_start="52919" e_stop="52738"/>
          <exon e_start="52627" e_stop="52617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATACACACTTTTCTCCCCTTCTCTTTCAAATATCAAAAACACAAAACTCTTTTTTGTTAGGTAATAACTCAACATGGGGAGGATGGTTCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAGGTATACCTATGCTACATATATACGTCATACGTTTTATTTCATATGACAGTTATTTGACTATACGCGCTGATCAGTACAAGTAAAAAGAAAGATATTCGCCATATATACTTGGAACTTATTATTTTAAGCATGTTATGACATTTCTATGACTATATATAACAGGAAAAATTAAATATCTAACTGTTGGATTAAAAAGGAAAATGTGTCGTATAAACTGAAACAGAAGAAATACTCGTAGATTACTTTTTTTCTCATGAATTTATTTGTGTATGCTAGGAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAGGTTAACAACAACAGTGAATTAATTACTCATAGAGTTTGTCTCTTTTTTCTTTCTAATTTTATGCTTTAATACTGAAGGCAAGTGTTTGTTTCATTATATATGTAATTCAGGCGTAACAGCT</genome_strand>
        <mrna_strand>AACAATACACACTTTTCTCCCCTTCTCTTTCAAATATCAAAAACACAAAACTCTTTTTTGTTAGGTAATAACTCAACATGGGGAGGATGGTTCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAG....................................................................................................................................................................................................................................................................................GAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAG..............................................................................................................GCGTAACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206161" ref_strand="+" ref_description="SGN-E206161 [cLEC-29-A3]">
      <seq>tatttgactatacgcgctgatcagtacaagtgaaaagaaagatattcgccatatatacttggaacttattattttaagcatgttatgacatttctatgactatgtataacaggaaaaattaaatatctaactgttggattaaaaaggaaaatgtgtcgtataaactgaaacagaagaaatactcgtagattactttttttctcatgaatttatatgtgtatgctaggaacttgatggaccaaatgcaagaattgcagattacttcgatgtagtagcaggaacaagcacaagtggattagtaacaactatgcttactgctcctaacaaggataatcgtcctttatatcaagcacacgatatttccaatttctacatgcaacatggccctcaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="53445" stop="52450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53145" g_stop="52750" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E206161" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53145" e_stop="52750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGACTATACGCGCTGATCAGTACAAGTAAAAAGAAAGATATTCGCCATATATACTTGGAACTTATTATTTTAAGCATGTTATGACATTTCTATGACTATATATAACAGGAAAAATTAAATATCTAACTGTTGGATTAAAAAGGAAAATGTGTCGTATAAACTGAAACAGAAGAAATACTCGTAGATTACTTTTTTTCTCATGAATTTATTTGTGTATGCTAGGAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTT</genome_strand>
        <mrna_strand>TATTTGACTATACGCGCTGATCAGTACAAGTGAAAAGAAAGATATTCGCCATATATACTTGGAACTTATTATTTTAAGCATGTTATGACATTTCTATGACTATGTATAACAGGAAAAATTAAATATCTAACTGTTGGATTAAAAAGGAAAATGTGTCGTATAAACTGAAACAGAAGAAATACTCGTAGATTACTTTTTTTCTCATGAATTTATATGTGTATGCTAGGAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAAGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCACACGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244648" ref_strand="+" ref_description="SGN-E244648 [cLED-38-E11]">
      <seq>cttttttttaccctccaagttttacaacctccattaggagtttctgccgccaccataggaaagacggtaaccgttttgagtatcgatggaggtggtattagaggcattattcctggaaccctacttgccttccttgaatctaaacttcaggaacttgatggaccaaatgcaaaaattgcagattactccaatgtagtagcaggaacaagcacaggtggattagtaacaactatgcttactgctcctaacaaggataatcgatctttatatcaggcaaaagattatttccaatatctacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="53645" stop="52471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53345" g_stop="53196" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53195" i_stop="52920" i_length="276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52919" g_stop="52771" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="300" r_length="150" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E244648" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53345" e_stop="53196"/>
          <exon e_start="52919" e_stop="52771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAGGTATACCTATGCTACATATATACGTCATACGTTTTATTTCATATGACAGTTATTTGACTATACGCGCTGATCAGTACAAGTAAAAAGAAAGATATTCGCCATATATACTTGGAACTTATTATTTTAAGCATGTTATGACATTTCTATGACTATATATAACAGGAAAAATTAAATATCTAACTGTTGGATTAAAAAGGAAAATGTGTCGTATAAACTGAAACAGAAGAAATACTCGTAGATTACTTTTTTTCTCATGAATTTATTTGTGTATGCTAGGAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGA-TATTTCCAATTTCTACAT</genome_strand>
        <mrna_strand>CTTTTTTTTACCCTCCAAGTTTTACAACCTCCATTAGGAGTTTCTGCCGCCACCATAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAG....................................................................................................................................................................................................................................................................................GAACTTGATGGACCAAATGCAAAAATTGCAGATTACTCCAATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGATCTTTATATCAGGCAAAAGATTATTTCCAATATCTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365582" ref_strand="+" ref_description="SGN-E365582 [cLPT-12-N18]">
      <seq>aatcttgtggctttaatggtgaatgcgttccagaaattggaagagagaatgtacggtgtgctttgcaatagtgagaaatcatcaacaaaagcggctgtggatgcttttgctgagatgggtgttcaagttaccgttgaagattttgtgcctttcatgggcatgggtaaattcttcttcttcttcttgaatattttctttgtcaatctgcttatacgtagttgtttttccttcttggttttctttcaagtgtttgatgcgaaagatgggtatgaaattatcattgcttcccgcggttcagggtactggttcttgaacaattgaaccaacactcttgaacaattgaagcaacaccaactggtttctcaacaattgaaccaacaccaaccggttccaactggttcttgattgaaaagtagtttcttgatttgtatgtttgggaaccatggacaattttgggtgtatttgttgacttcactagcttctttggatatcattccttaaggagtcgaggataaagtaaagcatcaatcgaatggacaatattttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="72455" stop="73635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72755" g_stop="73335" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E365582" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.054" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72755" e_stop="73335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGGAGCTTTAATGGTGAATGCGTTCCAGAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGGGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGGGTAAATTCTTCTTCTTCTTCTTGAATATTTTCTTTGTCAATCTGCTTATACGTAGTTGTTTTTCCTTCTTGGTTTTCTTTCAAGTGTTTGATGCGAAAGATGGGTATGAAATTATCATTGCTTCCCGCGGTTCAGGGTACTGGTTCTTGAACAATTGAACCAGCACTCTTGAACAATTAAACCAACATCAACGGGTTCTTGAACAATTGAAGCAAGACCAACTGGTTTCTGAACAATTGAACCAACACCAACCGGTTCCAACTGGTTCTTGATTGAAAAGTAGTTTCTTGATTTGTATGTTTGGGAACCATTGACAATTTTGGGTGTTTTTGTTGACTTCACTAGCTTCTTTGGATATCATTCCTTAAGGAGTCGAGGATAAAGTAAAGCATCAATCCAATGGACAATATTTTCTACT</genome_strand>
        <mrna_strand>AATCTTGTGGCTTTAATGGTGAATGCGTTCCAGAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGAGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGGGTAAATTCTTCTTCTTCTTCTTGAATATTTTCTTTGTCAATCTGCTTATACGTAGTTGTTTTTCCTTCTTGGTTTTCTTTCAAGTGTTTGATGCGAAAGATGGGTATGAAATTATCATTGCTTCCCGCGGTTCAGGGTACTGGTTCTTGAACAATTG-A--A-------------------CC-A-A-C-AC----TCTTGAACAATTGAAGCAACACCAACTGGTTTCTCAACAATTGAACCAACACCAACCGGTTCCAACTGGTTCTTGATTGAAAAGTAGTTTCTTGATTTGTATGTTTGGGAACCATGGACAATTTTGGGTGTATTTGTTGACTTCACTAGCTTCTTTGGATATCATTCCTTAAGGAGTCGAGGATAAAGTAAAGCATCAATCGAATGGACAATATTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205920" ref_strand="+" ref_description="SGN-E205920 [cLEC-20-N24]">
      <seq>tttaatggtgaatgcgttccacaaattggaagagagaatgtacggtgtgctttgcaatagtgagaaatcatcaacaaaagcggctgtggatgcttttgctgggatgggtgttcaagttaccgttgaagattttgtgcctttcatgggcatggggtgttgaaggatttgatgccgaggctgcaaagaagaggttctttgagatatatttattaaaggtgattgaaatttcatatatttacgaatatctactctcaaagcagatttcactgggcaatcatttgtagtatgcagaccgaattatggcataggtgtccctggtgcctttgaacttttctctcaggtccatccatttcttcacagtatatatgcaaacacacacactatgcgttggtttgtaatgtagttcgggaggacgtagtacttttattaaggctaaagtgtacaactcggatgaaaatcacaggttttgatgcaattgtatctgctgatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="72466" stop="75901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72766" g_stop="72917" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72918" i_stop="74389" i_length="1472">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74390" g_stop="74507" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="270" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74508" i_stop="74584" i_length="77">
            <donor d_prob="0.673" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74585" g_stop="74654" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="340" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74655" i_stop="75347" i_length="693">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.072" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75348" g_stop="75470" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="463" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75471" i_stop="75572" i_length="102">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75573" g_stop="75601" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="492" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E205920" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72766" e_stop="72917"/>
          <exon e_start="74390" e_stop="74507"/>
          <exon e_start="74585" e_stop="74654"/>
          <exon e_start="75348" e_stop="75470"/>
          <exon e_start="75573" e_stop="75601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGGTGAATGCGTTCCAGAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGGGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGGGTAAATTCTTCTTCTTCTTCTTGAATATTTTCTTTGTCAATCTGCTTATACGTAGTTGTTTTTCCTTCTTGGTTTTCTTTCAAGTGTTTGATGCGAAAGATGGGTATGAAATTATCATTGCTTCCCGCGGTTCAGGGTACTGGTTCTTGAACAATTGAACCAGCACTCTTGAACAATTAAACCAACATCAACGGGTTCTTGAACAATTGAAGCAAGACCAACTGGTTTCTGAACAATTGAACCAACACCAACCGGTTCCAACTGGTTCTTGATTGAAAAGTAGTTTCTTGATTTGTATGTTTGGGAACCATTGACAATTTTGGGTGTTTTTGTTGACTTCACTAGCTTCTTTGGATATCATTCCTTAAGGAGTCGAGGATAAAGTAAAGCATCAATCCAATGGACAATATTTTCTACTGTTCAATGTTCTTCTTCAATTTCTTGATTGTTACATTCTTTTGATTTATTGTTTTTGAATTTTCAGAGGGGAAAGGTGTCTTTGTCAATACGCTTATATGTATTTGCTTTTCCCTTCTTGATTTATTTTTAAGTTTTTAATGTGAAAGATAGATATGAAATAATCATTATTGAACCGTGTTTTATTCATATTTTTTGAAAAAATTGCCCAACCCCAACTAATTCTTGATTGAGCAGGTGTTTCTTGATATATATGTTTAGCAGTTTAGGAACCATTGACGATAGTGGGCATTTTTGTCTTCGGATATAAACCGTAAATCATTAGTCCAATGGCCATTTCTTTTATGGTTTAATGCTATTGTCAGATTGCCTCATTATATCTTTTACGAGTTCACCTCAGCCATTGGTCATTTTGTTTGAAGGCATGCTGATAAATTTTATGAAGTAATGATTAAGCCAGATACATGAAATATCGATAAGAAGAAAAACAAAAGAAAAGAATTATCAAGAATCTCTGTCCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACCAGTAACCTTCATCTACCTCATTTGAATATTTGCTGTTTGTGAAGCATCATCTCTTTCCTCCCAAATAATAGGTTTCGGTTCTCGTGGTAGATCTTATCATGTGCTTACTTTCATGAATATAGCTAGCCGAGGCCTTAAGTGAATTCTTTCATTCACTATGTTGAATTTTAGGGCCCTTCTCCACAAGAAACCCTTGTGCTCACAAAATCATCCATATTGTCTACGAACTTGTTCTTTTGAATGATCATCATGTTAATTGCGATTGGATCCAAATACATCGGTTAAATTTTTTGATCTCGAATTACACTTGTTTTCGACACCAAGTATAAAAGAATTAGTTTGATGTTACTTATCCTTTAGGAAATGTATCTTTGATTGTGTAGCACCTTGTTCCTTTACCATATTTTCTCAATGACTTTTTCTCCTTTTGATTTTCCTTTACCCTCAAAATATATTATTTAGTGGAGCAAACTTCTTATGTGTTGCTGCTGCTGCTAAGGGTGTTGAAGGATTTGATGCCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATTAAAGGTGATTGAAATTTCATATATTTACGAATATCTACTCTCAAAGCAGATTTCACTGGGTATGTTATTGTTGTAAAGCACTTTCCTTTTAGTCGTGGTATCTGACTCCAGAACTGACAATTTTATTGATAAACAGGCAATCATTTGTAGTATGCAGACCGAATTATGGCATAGGTGTCCCTGGTGCCTTTGAACTTTTCTCTCAGGTATGTATAACCTGTGATACAACTTTACTAAATGTGGACTTGCTCTTTCTGTTTTTGTTACTTCTCATTAATCTGGTGATATGGTACGCCAGTGTAAAAGCAGCGGTCTCAAAGTTGCTGTTGCATCTAGTGCTTACCGAATTAAAGTTGATGCAAAGTGGCTGCAGCCGGTTTACCAATAATGATGTCAGTTAACATAATAAACTTTGGCTGTGAATAGTTGCTTCTCATTCCTTTAATAATAGGCATTCAAGAAACAGTGGATTAGACTGAATCAGCACATAGCAAGAACTATATTTTTTTAAATTATAAGTGTAGATATGTTTTATTGTAAAGAACTACCTTATATCTACTACACTTGGCGTATAACTTCTGCAATGGGAATTACTGGACATTAAATTTTTTGCTGACATAATGAATCTGTTAGTCATGGAATCAGGTGCTCAGACTCCAAAGGCTGTGATCTTTCTTATATGGCCTTGGGCAATCCTCCCCTTATGAGTTAGCTTTTGTTGTTGAGTTAGGCCCACGGACCGTCTCTTTACACAGTATCAGTGTCGGTCCCATCAATCCCTCGACCCCTGTTGTTATGTTTCTCTTTCTCAATATTGATCCCCCGTATTATGTTTTCTGTGCTTAGATTTTCTAGTCCTGGGTGTGCCCCTAACTTTTTGTGGTTGAGTTATGTTCAAGGTCCATCCATTTCTTCACAGTATATATGCAAACACACACACTATGCGTTGGTTTGTAATGTAGTTCGGGAGGACGTAGTACTTTTATTAAGGCTAAAGTGTACAACTCGGATGAAAATCACAGGTTTGCTGTGAACTGACTGAAACCTCCCTTCCCCTCTCTTCTTTGTTTTTAGTTATCCTTTATTTATATTTAATCTCATATCCTATTTGTTTGATTTGACAGGTTTTGATGCAATTGTATCTGCTGATGCC</genome_strand>
        <mrna_strand>TTTAATGGTGAATGCGTTCCACAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGGGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTGAAGGATTTGATGCCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATTAAAGGTGATTGAAATTTCATATATTTACGAATATCTACTCTCAAAGCAGATTTCACTGG.............................................................................GCAATCATTTGTAGTATGCAGACCGAATTATGGCATAGGTGTCCCTGGTGCCTTTGAACTTTTCTCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCCATTTCTTCACAGTATATATGCAAACACACACACTATGCGTTGGTTTGTAATGTAGTTCGGGAGGACGTAGTACTTTTATTAAGGCTAAAGTGTACAACTCGGATGAAAATCACAG......................................................................................................GTTTTGATGCAATTGTATCTGCTGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285068" ref_strand="-" ref_description="SGN-E285068 [cLER-19-H22]">
      <seq>atatatttatcaaagtatgcaaaaccgaattctggcattggtttccctggtgcctttgaacttgtctctcagtgtaaaagcagtggtctcaaagttgctgttgcatctagtgctgaccggattaaagttgatgcaaacttggctgcagccggtttaccaataacgatgtttgatgcaattgtatcagctgatgcttttaaaaatttgaagcctgctcctgatattttcttggctgcatcacggattcttgatgttcccactagtgagtgtattgtgattgaagatgcactagctggagtacaagctgccaaagctgcaaaaatgagatgtatagcagtgacgacaacactatcagaagatactctaaatgcggcggagccatcactcatcagaaaggagataagtgatatttcacttgaagatatcctcaatggtggctctggtagccatagtatgtagttcaccgacatgttaagaacttccctttcatgtaccatttacaaatgtagaatactgaagctctttttttttttttttatggaaaaacttgcgagtaagctcttttttgtaatgactgtaatttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="74297" stop="76972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74438" g_stop="74452" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74453" i_stop="74598" i_length="146">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.476" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74599" g_stop="74654" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="72" r_length="57" r_score="0.875"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74655" i_stop="74746" i_length="92">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.592" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74747" g_stop="74840" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="167" r_length="95" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74841" i_stop="75572" i_length="732">
            <donor d_prob="0.346" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75573" g_stop="75673" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="267" r_length="100" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75674" i_stop="76132" i_length="459">
            <donor d_prob="0.276" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76133" g_stop="76191" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="326" r_length="59" r_score="0.915"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76192" i_stop="76412" i_length="221">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76413" g_stop="76672" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="587" r_length="261" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E285068" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285068" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74438" e_stop="74452"/>
          <exon e_start="74599" e_stop="74654"/>
          <exon e_start="74747" e_stop="74840"/>
          <exon e_start="75573" e_stop="75673"/>
          <exon e_start="76133" e_stop="76191"/>
          <exon e_start="76413" e_stop="76672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTTATTAAAGGTGATTGAAATTTCATATATTTACGAATATCTACTCTCAAAGCAGATTTCACTGGGTATGTTATTGTTGTAAAGCACTTTCCTTTTAGTCGTGGTATCTGACTCCAGAACTGACAATTTTATTGATAAACAGGCAATCATTTGTAGTATGC-AGACCGAATTATGGCATAGGTGTCCCTGGTGCCTTTGAACTTTTCTCTCAGGTATGTATAACCTGTGATACAACTTTACTAAATGTGGACTTGCTCTTTCTGTTTTTGTTACTTCTCATTAATCTGGTGATATGGTACGCCAGTGTAAAAGCAGCGGTCTCAAAGTTGCTGTTGCATCTAGTGCTTACCGAATTAAAGTTGATGCAAA-GTGGCTGCAGCCGGTTTACCAATAATGATGTCAGTTAACATAATAAACTTTGGCTGTGAATAGTTGCTTCTCATTCCTTTAATAATAGGCATTCAAGAAACAGTGGATTAGACTGAATCAGCACATAGCAAGAACTATATTTTTTTAAATTATAAGTGTAGATATGTTTTATTGTAAAGAACTACCTTATATCTACTACACTTGGCGTATAACTTCTGCAATGGGAATTACTGGACATTAAATTTTTTGCTGACATAATGAATCTGTTAGTCATGGAATCAGGTGCTCAGACTCCAAAGGCTGTGATCTTTCTTATATGGCCTTGGGCAATCCTCCCCTTATGAGTTAGCTTTTGTTGTTGAGTTAGGCCCACGGACCGTCTCTTTACACAGTATCAGTGTCGGTCCCATCAATCCCTCGACCCCTGTTGTTATGTTTCTCTTTCTCAATATTGATCCCCCGTATTATGTTTTCTGTGCTTAGATTTTCTAGTCCTGGGTGTGCCCCTAACTTTTTGTGGTTGAGTTATGTTCAAGGTCCATCCATTTCTTCACAGTATATATGCAAACACACACACTATGCGTTGGTTTGTAATGTAGTTCGGGAGGACGTAGTACTTTTATTAAGGCTAAAGTGTACAACTCGGATGAAAATCACAGGTTTGCTGTGAACTGACTGAAACCTCCCTTCCCCTCTCTTCTTTGTTTTTAGTTATCCTTTATTTATATTTAATCTCATATCCTATTTGTTTGATTTGACAGGTTTTGATGCAATTGTATCTGCTGATGCCTTAAAAAGTTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATATTCCCAATAGTGAGGTAGATTCCAGGATGTGCAATGCTGTATTGCTACCACCCATCACCATTTTTTTCTTTTTAGACACTTTTATGTGGGTGGTATGTGGTACTAACCTGATGAGAAATTTACATTCAAATTCTGTTTGACTGAGAGTTCCCTACATTATTATCCATTAGTAACTGTAATAATCAGATGAAGCTAGCTGGAAAACAAAATTTAAGCAAAGAAGATACTACAAACTTGATAAATATATTGGCAACTTTTATGTTGAATATTATATTCCTGGATGGAAAAGAGATGCTCTATTGTCATTCTATCAGTCAGAACAGTTTTTCTAAATATGGATATAAAAATGGGGGTGCATTATGAATTGCTGAAGGTTCATCTTCAAGGATGATGAAGTTTTGAAGTGTTAAAGTAGATCAGTGTCCTGTTTGTCGATCTTGGTAGACATTATCATAATTCTGTATGTTGACATTTGTGTTGTGATTGAAGATAAATTAGCTGGAGTACAAGCTGCCAAAGCTGCGAAAATGAGGTATTTGTGTTTGAGTGCCTTTCCTTTATATAGTTGGACTATGTACAATCGTTCAAAGTTGTTGATATCACCAACCCTACATGAACTTTCCTTCATTTTTTCTGTCAACTGAATCAGTAAGCTGTATCAGCATCATTCTAATGTACCTCTTTGCCTCTGTTTTTAGCGATCATTTTGATTCCATTTTTTCTACATTCATAAATATGTTGACTTACTTGCAAATGTATAGCTGTGACGACAACACTATCAGAAGATACTCTAAAAACAGCGGAGCCCACACTTATCAGAAAGGAGATAAGCGATATTTCACTTGAAAATATCCTCGATGGTGGCTCTGGTAGCCATAGTATGTAGTGCACCAACATGTTAAGAACTTCCCTTTTCGTGTACCATTGACAAATGCAGAATACTGAAGCTC--TTTTGTGTTATTTATGGAAAAACATGCGAGTAAGCTCTTTTTTGTAATGACTATAACTTGTTG</genome_strand>
        <mrna_strand>ATATATTTATCAAAG..................................................................................................................................................TATGCAAAACCGAATTCTGGCATTGGTTTCCCTGGTGCCTTTGAACTTGTCTCTCAG............................................................................................TGTAAAAGCAGTGGTCTCAAAGTTGCTGTTGCATCTAGTGCTGACCGGATTAAAGTTGATGCAAACTTGGCTGCAGCCGGTTTACCAATAACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTTGATGCAATTGTATCAGCTGATGCTTTTAAAAATTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATGTTCCCACTAGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGTGATTGAAGATGCACTAGCTGGAGTACAAGCTGCCAAAGCTGCAAAAATGAG.............................................................................................................................................................................................................................ATGTATAGCAGTGACGACAACACTATCAGAAGATACTCTAAATGCGGCGGAGCCATCACTCATCAGAAAGGAGATAAGTGATATTTCACTTGAAGATATCCTCAATGGTGGCTCTGGTAGCCATAGTATGTAGTTCACCGACATGTTAAGAACTTCCC-TTTCATGTACCATTTACAAATGTAGAATACTGAAGCTCTTTTTTTTTTTTTTTATGGAAAAACTTGCGAGTAAGCTCTTTTTTGTAATGACTGTAATTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414385" ref_strand="-" ref_description="SGN-E414385 [STM-19-O2]">
      <seq>caataagaggaaggagttcatatcagatgtatttcaagttggaatgtgaaagactaaagaaaatacttggggagagttctggttctaagaaaatcagtgatatggccattaatgcctggaagactgactgaaaatgacaaagagccttatattgaagcaagtaagctggataaggaaagatatatccgagaaacggctgcttatgaacagcataagaacaaagaaactacaacaaatccaaacttgcacaggggtttggtcccgagtatgatcaattttggtgcaccatcagtaattgatcatgtgacttcgcaagctgacactggaagcaacattatccctgatgcagcctttatcgagtccactgtacaaataccgaataatggtaagacaagtaaccccatatttcagttgctaccttggtgggtttaggaagatatgtataggtttctatctgtaagtatcttacaaccttagcatgatgttttggagatgtatatagcttctagtctttgaaaactagcgtgtcaagaagcagcatttgtaggttattgttgtccttgtcgtattattgtgaatcttttaatttttgatatctaaaaaaggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="77588" stop="79047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77888" g_stop="78030" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78031" i_stop="78195" i_length="165">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78196" g_stop="78466" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="411" r_length="267" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78467" i_stop="78500" i_length="34">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78501" g_stop="78640" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="551" r_length="140" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78641" i_stop="78690" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78691" g_stop="78747" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="609" r_length="58" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E414385" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414385" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77888" e_stop="78030"/>
          <exon e_start="78196" e_stop="78466"/>
          <exon e_start="78501" e_stop="78640"/>
          <exon e_start="78691" e_stop="78747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAAGAGGAAGGAGTTCATATCGGATGTATGTCAAGTTGGAATGTGAAA-ACTAAAGAAAGTACTTGGGCAGAGTTCTGGTGCTAAGAAAATCAGAGATATGGCCATTAATGCCTGGAAGACTGTCTGAAAATGACAAAGAGGTACGATGAAGTACTTATCATATTGTTGCTAGCAGACCTGTGTTTATTTAAACATAATTTTGGCATTTAAGCATTCATGTTTCTTTCTCCTACTTCAACAAACATACACAAATTTAAGCAAGTAAAAGTTTTTCCTGGTTCATCGTATCCTTCCAACTTTTGCTGCCTTACATTGGAGCAAGTAAGCTGGATAAGGAAAGATATATCCAAGAAATGGCTGCTTATGAACAGCATAAGAACAAAGAAACTACAACAAATCCAAACTTGCACAGGGGTTTGGCCCCAAGTATGATCAACTTTGGTGCACGGAATTGATCATGGTTATCATGTGACTTCACAAGCTTATACTGGAAGCAACATTCTCCCTAATGCATCCTCTATTGAGTCCACGGTACAAATATTGAATAATGGTAAGACAAGTAACCCCATATTTCAGATGTATTGGTGCTCTTTTGCCTAGTCAATTTCAGTTGCTACTTTGGTGGGTTTTGAAAGATATGTATAGCTTTCGATCTGTAAGTATCTTACAACCTTAGCATGATGCTTTTAAGATGTATATAGCTTCTAGTCTTTGAAAACTAGCGTGTCAAGAAGCAGCATTTGTAGGTTAGTTGGTAGTGGAGGGTTATCTTGTTTTTTGAGGCGGCGTGTTGGTTTTATTT-TTGTCCTAGTTTTATTATTGTGATTCTTTTAATTTTTGATATCTTATCACTGTCT</genome_strand>
        <mrna_strand>CAATAAGAGGAAGGAGTTCATATCAGATGTATTTCAAGTTGGAATGTGAAAGACTAAAGAAAATACTTGGGGAGAGTTCTGGTTCTAAGAAAATCAGTGATATGGCCATTAATGCCTGGAAGACTGACTGAAAATGACAAAGAG.....................................................................................................................................................................CCTTATATTGAAGCAAGTAAGCTGGATAAGGAAAGATATATCCGAGAAACGGCTGCTTATGAACAGCATAAGAACAAAGAAACTACAACAAATCCAAACTTGCACAGGGGTTTGGTCCCGAGTATGATCAATTTTGGTGCAC--CATCAGTAAT--TGATCATGTGACTTCGCAAGCTGACACTGGAAGCAACATTATCCCTGATGCAGCCTTTATCGAGTCCACTGTACAAATACCGAATAATGGTAAGACAAGTAACCCCATATTTCAG..................................TTGCTACCTTGGTGGGTTTAGGAAGATATGTATAGGTTTCTATCTGTAAGTATCTTACAACCTTAGCATGATGTTTTGGAGATGTATATAGCTTCTAGTCTTTGAAAACTAGCGTGTCAAGAAGCAGCATTTGTAGGTTA..................................................TTGTTGTCCTTGTCGTATTATTGTGAATCTTTTAATTTTTGATATCTAAAAAAGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740282" ref_strand="+" ref_description="SGN-E740282 [LC20DC04]">
      <seq>agggccttctgtactctgcagatccatcttcttcatctctctttcaacacaaattcaaacttcaaactaaacaaatttccgctaatttttactaatttcgttttcgtgcaattttctcaacctttgagagctaactgagcttttcttttttttggcttgatttgtttttcaagtacattgggttgtttctgaaaccccaatgggtgcttgtacttctagaccctcaaattatgccggggacagtaatggcaacagagccacacttccggtgaaatctactccgaacaataatgaggacggtaacagtcatcagcaagaaaggacgaaaaaggacgaagctgatgtaggtaaaaagtcaccttttttccctttctacagtcctagtccggcgcattatttgttctccaagaaatctccgttgagatctccggcgaatgccagcactaattctactcctcgaaggttttttaaacggccatttcctccgccgtctccagcgaaacacatccgtgctgtgttggctcggcgacacggctctgtgaaaccgaatgagtctgcgattcccgaagtaaatgaaacggaggttggcggtggcggtggaggcggcgcggggcttgataagagttttggattttcgaagaattttgggaacaagtatgagctgggagaggaagttggaagagggcattttggatatacttgtaaagctaagttcaggaaaggtgaagttaaaggacaagaagttgctttaaaagtcatccccaaatcaaagatgactactgcaatagccattgaggatgtgagaagaaaggtgaagaaattaagagctttgacaggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="85321" stop="88104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85618" g_stop="86389" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86390" i_stop="87735" i_length="1346">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87736" g_stop="87804" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="841" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E740282" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85618" e_stop="86389"/>
          <exon e_start="87736" e_stop="87804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCCTTCTGTACTCTGCAGATCCATCTTCTTCATCTCTCTTTCAACACAAATTCAAACTTCAAACTAAACAAATTTCCGCTAATTTTTACTAATTTCGTTTTCGTGCAATTTTCTCAACCTTTGAGAGCTAACTGAGCTTTTCTTTTTTTTGGCTTGATTTGTTTTTCAAGTACATTGGGTTGTTTCTGAAACCCCAATGGGTGCTTGTACTTCTAGACCCTCAAATTATGCCGGGGACAGTAATGGCAACAGAGCCACACTTCCGGTGAAATCTACTCCGAACAATAATGAGGACGGTAACAGTCATCAGCAAGAAAGGACGAAAAAGGACGAAGCTGATGTAGGTAAAAAGTCACCTTTTTTCCCTTTCTACAGTCCTAGTCCGGCGCATTATTTGTTCTCCAAGAAATCTCCGTTGAGATCTCCGGCGAATGCCAGCACTAATTCTACTCCTCGAAGGTTTTTTAAACGGCCATTTCCTCCGCCGTCTCCAGCGAAACACATCCGTGCTGTGTTGGCTCGGCGACACGGCTCTGTGAAACCGAATGAGTCTGCGATTCCCGAAGTAAATGAAACGGAGGTTGGCGGTGGCGGTGGAGGCGGCGCGGGGCTTGATAAGAGTTTTGGATTTTCGAAGAATTTTGGGAACAAGTATGAGCTGGGAGAGGAAGTTGGAAGAGGGCATTTTGGATATACTTGTAAAGCTAAGTTCAGGAAAGGTGAAGTTAAAGGACAAGAAGTTGCTGTAAAAGTCATCCCCAAATCAAAGGTTTGGCATTTTCTGATACTCTCAATTTTCTTTCAAGTTTGATTTAACTGTTATGATCTATCATCTCTGTGGTCAAAGTTTGTTGGATTTTTCTCTTTTTTACTACTTGAGTATTAGTGGTCAGATCTACTCTAGAGATTGTAGTCTTTGACTTTGTTATCTTTCTATTTTCAAATGTCCTTTTTGTACCACTTATTGTTTTTGTTTTCCAGATGGATCCATCATCTACTGTTTCCTTAGGAGGTATAGTAGATGATAGCATAAAGCTTAATTTATTTGGCAATTAAGTTTAAAGGTTGTGAAGTGATGGAATGAGGAAGCTTTTCGCAGCTTCTGTTGCAGTGGCATACGTGATTATATTTGTTATATGCTGATTACTGTTTCAAAGGAAGCAATTCAATCTTTGCAGTGCACTGAAGTCTAAAGTTTTTATTGAACTGTTCTTGGAGTCCGAAAATTATCTGTTCAATTGTCCATAAGATGCACTGAGTTTGGATTAACAGTGAGTTAATAGAGTATCGACATTATAATTGGATGCGATGAAAAGAGGAATAACAACTTAAGGGTCTAAGGGAAGTCAAGGAAGAGGGGTGATGTTATTGTCCCATTTTTTGTATTGATGTCCAAGAGTTACAATTTGAGTTTGAAATTCCAAACTTTCGACATGATCATTGAGGTGAGACTACTGGTATTTGTCCTACCCAAAGAATTCACAAACTTTACAAAAGTTGGTTCAAGTGGGTCTATATACGATGTCGGATGACTTGGTTTTGTTTGTTCCTGAAGGCTGGTTTGTTCCATCTGATGTTCATGTTCCTTATTTGGTTTAGAAGTAAAGAGAAAAGGAACAATATCCAGACTAAAGTAGCTCTCTTTTGTTTTTAAAAAACAGAAGTAAATGGAGAGATGGAGTCAAATGTGTTCTCTTTGTCTTCTAGTTGTACAAGTAACACGAGAAGGAGAAAACAATTTATTTCAATAAGTTAAGAAATAACACTCCCTCCCACAACTCCCCTCCCCTTCCTCTCCAAAATCATACATTTTGTAGAGTTTAAGGGCTCTTAAGGTCTGCGTATATCCTATCCTCCCCAGACTGCACTTATGGGATTACACTGGTTATATTGTTGTTGTCGTTACAGCAGCAAAATCTTCTTGAAATAGGTGTCCCACCCCCCCCCCCTCCAAATTTCTGCTGTTTGTAGCTTGATTTTTCTATTTTGCTTGAATATTCCCTAATATAAGTTGATGCATGCCTATTGTTGTTCAGAATGTGCGGTCAGTGGTTTTTTTAATTCTCTTCTGGTGATTTATTTGAAATATATGATCATATTCATTTCCTTTTCCAGATGACTACTGCAATAGCCATTGAGGATGTGAGAAGAGAGGTGAAGATATTAAGAGCTTTGACAGGACAT</genome_strand>
        <mrna_strand>AGGGCCTTCTGTACTCTGCAGATCCATCTTCTTCATCTCTCTTTCAACACAAATTCAAACTTCAAACTAAACAAATTTCCGCTAATTTTTACTAATTTCGTTTTCGTGCAATTTTCTCAACCTTTGAGAGCTAACTGAGCTTTTCTTTTTTTTGGCTTGATTTGTTTTTCAAGTACATTGGGTTGTTTCTGAAACCCCAATGGGTGCTTGTACTTCTAGACCCTCAAATTATGCCGGGGACAGTAATGGCAACAGAGCCACACTTCCGGTGAAATCTACTCCGAACAATAATGAGGACGGTAACAGTCATCAGCAAGAAAGGACGAAAAAGGACGAAGCTGATGTAGGTAAAAAGTCACCTTTTTTCCCTTTCTACAGTCCTAGTCCGGCGCATTATTTGTTCTCCAAGAAATCTCCGTTGAGATCTCCGGCGAATGCCAGCACTAATTCTACTCCTCGAAGGTTTTTTAAACGGCCATTTCCTCCGCCGTCTCCAGCGAAACACATCCGTGCTGTGTTGGCTCGGCGACACGGCTCTGTGAAACCGAATGAGTCTGCGATTCCCGAAGTAAATGAAACGGAGGTTGGCGGTGGCGGTGGAGGCGGCGCGGGGCTTGATAAGAGTTTTGGATTTTCGAAGAATTTTGGGAACAAGTATGAGCTGGGAGAGGAAGTTGGAAGAGGGCATTTTGGATATACTTGTAAAGCTAAGTTCAGGAAAGGTGAAGTTAAAGGACAAGAAGTTGCTTTAAAAGTCATCCCCAAATCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTACTGCAATAGCCATTGAGGATGTGAGAAGAAAGGTGAAGAAATTAAGAGCTTTGACAGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425747" ref_strand="+" ref_description="SGN-E425747 [STM-45-D15]">
      <seq>gccttctgcactctgcagatccatcttcttcatctctcttcaacacaaattcaaacttcaaaataaacaatttccgctaatttatactaatttcgttttcgtgcaattttctcaacttttagagctaactgagcttttttttgccttaatttgttcttcaagtacattgcgttgtttctgaaaccccaatgggtgcttgcacttctagaccctcaaattattccgacgacagcattactgtcgccggcaacagagctacacttccggtgaaagctactccgaacaataatgaggacggtaacagtcatcagcaagaaaggacgaaaaaggacgaagctgatgtaggtaaaaagtcaccttttttccctttctacagtcctagtccggcgcattatttgttctccaagaaatctccgttgagatctccggcgaatgccagctctaattctactcctcgaaggttttttaaacggccatttcctccgccgtctccgggaaaacacatnccgtgctgtgttggctcggcgacacggctctgtgaaaccgaatgagtctgcgattcccgaagaaatgaaacggaggttggcggcggcggtggaagcggcgcggggcttgataagaagtttggatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="85321" stop="86552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85621" g_stop="86252" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E425747" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85621" e_stop="86252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCTGTACTCTGCAGATCCATCTTCTTCATCTCTCTTTCAACACAAATTCAAACTTCAAACTAAACAAATTTCCGCTAATTTTTACTAATTTCGTTTTCGTGCAATTTTCTCAACCTTTGAGAGCTAACTGAGCTTTTCTTTTTTTTGGCTTGATTTGTTTTTCAAGTACATTGGGTTGTTTCTGAAACCCCAATGGGTGCTTGTACTTCTAGACCCTCAAATTATGCCGGGGACAG---TA--AT----GGCAACAGAGCCACACTTCCGGTGAAATCTACTCCGAACAATAATGAGGACGGTAACAGTCATCAGCAAGAAAGGACGAAAAAGGACGAAGCTGATGTAGGTAAAAAGTCACCTTTTTTCCCTTTCTACAGTCCTAGTCCGGCGCATTATTTGTTCTCCAAGAAATCTCCGTTGAGATCTCCGGCGAATGCCAGCACTAATTCTACTCCTCGAAGGTTTTTTAAACGGCCATTTCCTCCGCCGTCTCCAGCGAAACACAT-CCGTGCTGTGTTGGCTCGGCGACACGGCTCTGTGAAACCGAATGAGTCTGCGATTCCCGAAGTAAATGAAACGGAGGTTGGCGGTGGCGGTGGAGGCGGCGCGGGGCTTGATAAGAGTTTTGGATTTT</genome_strand>
        <mrna_strand>GCCTTCTGCACTCTGCAGATCCATCTTCTTCATCTCTC-TTCAACACAAATTCAAACTTCAAAATAAAC-AATTTCCGCTAATTTATACTAATTTCGTTTTCGTGCAATTTTCTCAA-CTTTTAGAGCTAACTGAG-----CTTTTTTTTGCCTTAATTTGTTCTTCAAGTACATTGCGTTGTTTCTGAAACCCCAATGGGTGCTTGCACTTCTAGACCCTCAAATTATTCCGACGACAGCATTACTGTCGCCGGCAACAGAGCTACACTTCCGGTGAAAGCTACTCCGAACAATAATGAGGACGGTAACAGTCATCAGCAAGAAAGGACGAAAAAGGACGAAGCTGATGTAGGTAAAAAGTCACCTTTTTTCCCTTTCTACAGTCCTAGTCCGGCGCATTATTTGTTCTCCAAGAAATCTCCGTTGAGATCTCCGGCGAATGCCAGCTCTAATTCTACTCCTCGAAGGTTTTTTAAACGGCCATTTCCTCCGCCGTCTCCGGGAAAACACATNCCGTGCTGTGTTGGCTCGGCGACACGGCTCTGTGAAACCGAATGAGTCTGCGATTCCCGAAG-AAATGAAACGGAGGTTGGCGGCGGCGGTGGAAGCGGCGCGGGGCTTGATAAGAAGTTTGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455281" ref_strand="+" ref_description="SGN-E455281 [cSTS-25-J4]">
      <seq>gccttctgcactctgcagatccatcttcttcatctctcttcaacacaaattcaaacttcaaaataaacaatttccgctaatttatactaatttcgttttcgtgcaattttctcaacttttagagctaactgagcttttttttgccttaatttgttcttcaagtacattgcgttgtttctgaaaccccaatgggtgcttgcacttctagaccctcaaattattccgacgacagcattactgtcgccggcaacagagctacacttccggtgaaagctactccgaacaataatgaggacggtaacagtcatcagcaagaaaggacgaaaaaggacgaagctgatgtaggtaaaaagtcaccttttttccctttctacagtcctagtccggcgcattatttgttctccaagaaatctccgttgagatctccggcgaatgccagctctaattctactcctcgaaggttttttaaacggccatttcctccgccgtctccggcgaacacaatccgtgctgtgttggctcggcgacacggctctgtgaaaccgaatgagtctgcgattcccgaagtaaatgaaancggagttggcggcggcggtggatgcggcgccgggcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="85321" stop="86535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85621" g_stop="86235" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E455281" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85621" e_stop="86235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCTGTACTCTGCAGATCCATCTTCTTCATCTCTCTTTCAACACAAATTCAAACTTCAAACTAAACAAATTTCCGCTAATTTTTACTAATTTCGTTTTCGTGCAATTTTCTCAACCTTTGAGAGCTAACTGAGCTTTTCTTTTTTTTGGCTTGATTTGTTTTTCAAGTACATTGGGTTGTTTCTGAAACCCCAATGGGTGCTTGTACTTCTAGACCCTCAAATTATGCCGGGGACAG---TA--AT----GGCAACAGAGCCACACTTCCGGTGAAATCTACTCCGAACAATAATGAGGACGGTAACAGTCATCAGCAAGAAAGGACGAAAAAGGACGAAGCTGATGTAGGTAAAAAGTCACCTTTTTTCCCTTTCTACAGTCCTAGTCCGGCGCATTATTTGTTCTCCAAGAAATCTCCGTTGAGATCTCCGGCGAATGCCAGCACTAATTCTACTCCTCGAAGGTTTTTTAAACGGCCATTTCCTCCGCCGTCTCCAGCGAA-ACACATCCGTGCTGTGTTGGCTCGGCGACACGGCTCTGTGAAACCGAATGAGTCTGCGATTCCCGAAGTAAATGAAACGGAGGTTGGCGGTGGCGGTGGAGGCGGCGCGGGGCTTGA</genome_strand>
        <mrna_strand>GCCTTCTGCACTCTGCAGATCCATCTTCTTCATCTCTC-TTCAACACAAATTCAAACTTCAAAATAAAC-AATTTCCGCTAATTTATACTAATTTCGTTTTCGTGCAATTTTCTCAA-CTTTTAGAGCTAACTGAG-----CTTTTTTTTGCCTTAATTTGTTCTTCAAGTACATTGCGTTGTTTCTGAAACCCCAATGGGTGCTTGCACTTCTAGACCCTCAAATTATTCCGACGACAGCATTACTGTCGCCGGCAACAGAGCTACACTTCCGGTGAAAGCTACTCCGAACAATAATGAGGACGGTAACAGTCATCAGCAAGAAAGGACGAAAAAGGACGAAGCTGATGTAGGTAAAAAGTCACCTTTTTTCCCTTTCTACAGTCCTAGTCCGGCGCATTATTTGTTCTCCAAGAAATCTCCGTTGAGATCTCCGGCGAATGCCAGCTCTAATTCTACTCCTCGAAGGTTTTTTAAACGGCCATTTCCTCCGCCGTCTCCGGCGAACACA-ATCCGTGCTGTGTTGGCTCGGCGACACGGCTCTGTGAAACCGAATGAGTCTGCGATTCCCGAAGTAAATGAAANCGGAGTTGGCGGCGGCGGTGGATGCGGCGCCGGGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701736" ref_strand="+" ref_description="SGN-E701736 [FA16DC01]">
      <seq>aagagctttgacaggacatagcaatttactcttattttatgattcatatgaagaccacaccaatgtctacatagtcatggagctgtgtgaaggaggtgagcttttggatagaatactctctagaggtggaaagtactcggaggatgatgcaaagactgtaatgatacaaatactgaaagttgttgcattttgccaccttcaaggtgtggtacaccgggatcttaagccagagaatttcttatttacgtctaaagaggaaaatgcacaacttaaagcaatagactttggactttctgattttgtgaagccagatgaaagacttaatgatatagttggtagtgcatattatgttgcgcccgaggttctacatagatcttatagtacagaggctgatgtttggagtataggtgtcatagcatatatcctattgtgtggaagccgtcctttttgggctcgaacagaatctgggatatttaggtctgtcctcaaagctgatccaagttttgaagaacagccctggcctacattatcttctgaggcgaaagactttgtgaaacgtctattgaataaggatccccggaaaagaatgactgctgctcaggctttgggtcatccatggataaagaatagtcacaacatagaagtgcctttggatattctgatattcaaactgatgaaggcttacatgcggtcctctgctcttaggaaagctgcactacgggctttgtcgaagacattgacagtagatgagctattctatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="87486" stop="89993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87786" g_stop="87866" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87867" i_stop="88110" i_length="244">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88111" g_stop="88152" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="123" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88153" i_stop="88251" i_length="99">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88252" g_stop="88360" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="232" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88361" i_stop="88773" i_length="413">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.588" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88774" g_stop="88852" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="311" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88853" i_stop="88989" i_length="137">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88990" g_stop="89286" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="608" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89287" i_stop="89368" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89369" g_stop="89481" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="721" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89482" i_stop="89650" i_length="169">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89651" g_stop="89693" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="764" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E701736" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87786" e_stop="87866"/>
          <exon e_start="88111" e_stop="88152"/>
          <exon e_start="88252" e_stop="88360"/>
          <exon e_start="88774" e_stop="88852"/>
          <exon e_start="88990" e_stop="89286"/>
          <exon e_start="89369" e_stop="89481"/>
          <exon e_start="89651" e_stop="89693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCTTTGACAGGACATAGCAATTTAGTAAAATTTTATGATTCATATGAAGACCACACCAATGTCTACATAGTCATGGAGTAAGCTTCATCACTCAACTCCCATCACATTTACATTTGCAATGGGGTTCAGTCTCAAACTTAGGTTGAGAGAAAACTTTATTGGAAAGTAACCAGAGTTTCAAGTACATGACAGTTTGTTTATTTTCTCAGCAAACATTTGTGTTCAATTATGATGTTTTGCTCTTATCAGGAGCTTTATCTGCTAATTTACTTATCACACCGCTCTTTTGAAATACTACTGATTAATCTTGTTATATTTCAGGCTGTGTGAAGGAGGTGAGCTTTTGGATAGAATACTCTCTAGGTAGTTCTTGATCTTTCCTATGTTTCAACATTTTTGAATTTGAACCTTGTGTTTTAATTGATAGAGAAGGTGCTAAGTTGTAGTGTTCTTGTCCTGCAGAGGTGGAAAGTACTCGGAGGATGATGCAAAGACTGTAATGATACAAATACTGAAAGTTGTTGCATTTTGCCACCTTCAAGGTGTGGTACACCGGGATCTTAAGCCAGAGGTGGGAGGACTAAAGTTCTCACTCTATGATTGCTTTAGAACAAACAACATTTCAGCATATCTAGATATTTTACCCTGTGTAGAAGGGAGAAATTTTTTTTGCACAAAAAAACGCCTTTTTCTTTACTGGGTCTTGGATTATGTTAATATTCCAACTGCAATAAATTTTCTTTCAGTTTCAAGTTGTGTAGATATATTATTCATCAGGCAGACTTAATGTTTGTTTCATCTGGTATTAGAGTTTAGGAACTAAATTGTTTAGCTAGCAAGTGACAGAGAAGCTCAAATGTACAGCCGTGGCATTTTTCTGTGGCTGAATCTATCACTTGTTGGAGAAGCTATGACATATGTTTCAGTAAACCTTCCTCTCTATCATACTGTCCGTCGTCTAATTCTAGCTTTCTGATTGACCAGAATTTCTTATTTACGTCTAAAGAGGAAAATGCACAACTTAAAGCAATAGACTTTGGACTTTCTGATTTTGTGAAGCCAGGTTAGTCCATTACTGCATCTCTGTAACCACTCCCCTCCCCACCCAAAAAAAAGGAGAGTAGAAAAAAAAGAACTACCTTTCATAAAATTTGAGAACCTCACCAACTTGTTTACGTGCCTTGCTCAATTACTTTGCAGATGAAAGACTTAATGATATAGTTGGTAGTGCATATTATGTTGCGCCCGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCCTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCTGCTCAGGCTTTGGGTGAGTTTCTTGAGTTATATTGGAAAATACAATCTTTTGTTCTTTAAATTTCTGCAAACTGCTGAACTACTTACTGTCTCAGGTCATCCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGGGTGTGTATGATGCTACCATGAAAAGTTTTTGTGTTCCCATTTTATCTTCCGAGTCCAGTGCTATATGTCAAGTAATGAAGCTCTATTTTGTACCGCATAGTATTTGCTGAAATTCTGACTAATCTTTTGCATTGTTCTTCATGGCATTGTCATTCTACAATTTTTGCAGGCTTTGTCGAAGACATTGACAGTAGATGAGCTATTCTATTTGA</genome_strand>
        <mrna_strand>AAGAGCTTTGACAGGACATAGCAATTTACTCTTATTTTATGATTCATATGAAGACCACACCAATGTCTACATAGTCATGGA....................................................................................................................................................................................................................................................GCTGTGTGAAGGAGGTGAGCTTTTGGATAGAATACTCTCTAG...................................................................................................AGGTGGAAAGTACTCGGAGGATGATGCAAAGACTGTAATGATACAAATACTGAAAGTTGTTGCATTTTGCCACCTTCAAGGTGTGGTACACCGGGATCTTAAGCCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCTTATTTACGTCTAAAGAGGAAAATGCACAACTTAAAGCAATAGACTTTGGACTTTCTGATTTTGTGAAGCCAG.........................................................................................................................................ATGAAAGACTTAATGATATAGTTGGTAGTGCATATTATGTTGCGCCCGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCCTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCTGCTCAGGCTTTGG..................................................................................GTCATCCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGG.........................................................................................................................................................................GCTTTGTCGAAGACATTGACAGTAGATGAGCTATTCTATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706252" ref_strand="+" ref_description="SGN-E706252 [FA29BG08]">
      <seq>gaaagacttaatgatatagttggtagtgcatattatgttgcgcccgaggttctacatagatcttatagtacagaggctgatgtttggagtataggtgtcatagcatatatcctattgtgtggaagccgtcctttttgggctcgaacagaatctgggatatttaggtctgtcctcaaagctgatccaagttttgaagaacagccctggcctacattatcttctgaggcgaaagactttgtgaaacgtctattgaataaggatccccggaaaagaatgactgctgctcaggctttgggtcatccatggataaagaatagtcacaacatagaagtgcctttggatattctgatattcaaactgatgaaggcttacatgcggtcctctgctcttaggaaagctgcactacgggctttgtcgaagacattgacagtagatgagctattctatttgaaggagcagtttgcactgctacaaccaagcaaaaatggcaccataagctttgaccatgttaaaacggtcctgatgaaacatgcaacagatgcaatgaaagaagctcgcatccatgattttcttgcatcgcttaatgcgctgcagtacaggaggatggattttgaagaattttgtgctgctgcattaagtgttcatcagcttgaggcttttgatcgttgggaacaacatgcacgttgtgcctatgaaatctttgagaaggaaggcaatagggccattatgatagaagaattagcttcggaacttggtcttagcccttcggttcctgtccatgctgttctacatgactggctcaggcacactgacggaaagctcagttttcttggttttgcaaagttgttgcatggagtgtctagccgttcaattgcaaaagttcaatgattcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="88692" stop="90758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88992" g_stop="89286" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89287" i_stop="89368" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89369" g_stop="89481" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="408" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89482" i_stop="89650" i_length="169">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89651" g_stop="89758" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="516" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89759" i_stop="89840" i_length="82">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89841" g_stop="89903" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="579" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89904" i_stop="89993" i_length="90">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89994" g_stop="90161" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="747" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90162" i_stop="90310" i_length="149">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90311" g_stop="90454" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="891" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E706252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88992" e_stop="89286"/>
          <exon e_start="89369" e_stop="89481"/>
          <exon e_start="89651" e_stop="89758"/>
          <exon e_start="89841" e_stop="89903"/>
          <exon e_start="89994" e_stop="90161"/>
          <exon e_start="90311" e_stop="90454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGACTTAATGATATAGTTGGTAGTGCATATTATGTTGCGCCCGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCCTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCTGCTCAGGCTTTGGGTGAGTTTCTTGAGTTATATTGGAAAATACAATCTTTTGTTCTTTAAATTTCTGCAAACTGCTGAACTACTTACTGTCTCAGGTCATCCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGGGTGTGTATGATGCTACCATGAAAAGTTTTTGTGTTCCCATTTTATCTTCCGAGTCCAGTGCTATATGTCAAGTAATGAAGCTCTATTTTGTACCGCATAGTATTTGCTGAAATTCTGACTAATCTTTTGCATTGTTCTTCATGGCATTGTCATTCTACAATTTTTGCAGGCTTTGTCGAAGACATTGACAGTAGATGAGCTATTCTATTTGAAGGAGCAGTTTGCACTGCTACAACCAAGCAAAAATGGCACCATAAGCTTTGACCATGTTAAAACGGTTTGTCTTTTGGAATAAAGAACGATTTATTAGTTTCTTCTTGTATCTTTCATGTTTTTGCTGATCTTCATGATTTTACCAGGTCCTGATGAAACATGCAACAGATGCAATGAAAGAAGCTCGCATCCATGATTTTCTTGCATCGGTAGATTTTGAGATCCTATTGACTTCAGATATTTAACTGGTGTTGTCATTGTTATGGGTTTAATAAATACTCCTTGTTCTTGTCATGCAGCTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCGGTAATCATGGTTCATTTTTTGTTCTGAATATTGATTGCCACGTGTTAGTCTCTTATATAACTGTCTCGTTTTTTCCTTTTCGGGAGAGGAGAGTGTGCAATTGATTGGGAAAGCAATCTAACTGAATTTAATTCAAATTTTTGGTCCAGGAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTC</genome_strand>
        <mrna_strand>GAAAGACTTAATGATATAGTTGGTAGTGCATATTATGTTGCGCCCGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCCTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCTGCTCAGGCTTTGG..................................................................................GTCATCCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGG.........................................................................................................................................................................GCTTTGTCGAAGACATTGACAGTAGATGAGCTATTCTATTTGAAGGAGCAGTTTGCACTGCTACAACCAAGCAAAAATGGCACCATAAGCTTTGACCATGTTAAAACG..................................................................................GTCCTGATGAAACATGCAACAGATGCAATGAAAGAAGCTCGCATCCATGATTTTCTTGCATCG..........................................................................................CTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCG.....................................................................................................................................................GAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429700" ref_strand="+" ref_description="SGN-E429700 [STM-52-B23]">
      <seq>gtttggagtataggtgtcatagcatatatcctattgtgtggaatccgtcctttttgggctcgaacagaatctgggatatttaggtctgtcctcaaagctgatccaagttttgaagaacagccttggcctacattatcttctgaggcgaaagactttgtgaaacgtctattgaataaggatccccggaaaagaatgactgcagctcaggctttgggtcatgcatggataaagaatagtcacaacatagaagtgcctttggatattctgatattcaaactgatgaaggcttacatgcggtcctctgctcttaggaaagctgcactacgggctttgtcaaagacattgacagtagatgagctattctatttgaaggagcagtttgcactgctacaaccaagcaaaaatggcaccataagcttcgacaatgtcaaaacggccctgatgaaacatgcaacagatgcaatgaaggaagctcgcatccatgattttcttgcatcgcttaatgcgctgcagtacaggaggatggattttgaagaattttgtgcagcggcattaagtgttcatcagcttgaggcttttgatcggtgggaacacatgcacgttgtgcctatgaaatcttcgagaaggaaggcaatacggccattatgatagaagaaatagcttcggaacttggtcttagccccttcggtcctgtccatgctgntctacatgactggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="88773" stop="90662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89073" g_stop="89286" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89287" i_stop="89368" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89369" g_stop="89481" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="327" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89482" i_stop="89650" i_length="169">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89651" g_stop="89758" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="435" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89759" i_stop="89840" i_length="82">
            <donor d_prob="0.866" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89841" g_stop="89903" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="498" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89904" i_stop="89993" i_length="90">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89994" g_stop="90161" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="665" r_length="167" r_score="0.958"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90162" i_stop="90310" i_length="149">
            <donor d_prob="0.966" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90311" g_stop="90362" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="717" r_length="52" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E429700" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89073" e_stop="89286"/>
          <exon e_start="89369" e_stop="89481"/>
          <exon e_start="89651" e_stop="89758"/>
          <exon e_start="89841" e_stop="89903"/>
          <exon e_start="89994" e_stop="90161"/>
          <exon e_start="90311" e_stop="90362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCCTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCTGCTCAGGCTTTGGGTGAGTTTCTTGAGTTATATTGGAAAATACAATCTTTTGTTCTTTAAATTTCTGCAAACTGCTGAACTACTTACTGTCTCAGGTCATCCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGGGTGTGTATGATGCTACCATGAAAAGTTTTTGTGTTCCCATTTTATCTTCCGAGTCCAGTGCTATATGTCAAGTAATGAAGCTCTATTTTGTACCGCATAGTATTTGCTGAAATTCTGACTAATCTTTTGCATTGTTCTTCATGGCATTGTCATTCTACAATTTTTGCAGGCTTTGTCGAAGACATTGACAGTAGATGAGCTATTCTATTTGAAGGAGCAGTTTGCACTGCTACAACCAAGCAAAAATGGCACCATAAGCTTTGACCATGTTAAAACGGTTTGTCTTTTGGAATAAAGAACGATTTATTAGTTTCTTCTTGTATCTTTCATGTTTTTGCTGATCTTCATGATTTTACCAGGTCCTGATGAAACATGCAACAGATGCAATGAAAGAAGCTCGCATCCATGATTTTCTTGCATCGGTAGATTTTGAGATCCTATTGACTTCAGATATTTAACTGGTGTTGTCATTGTTATGGGTTTAATAAATACTCCTTGTTCTTGTCATGCAGCTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCGGTAATCATGGTTCATTTTTTGTTCTGAATATTGATTGCCACGTGTTAGTCTCTTATATAACTGTCTCGTTTTTTCCTTTTCGGGAGAGGAGAGTGTGCAATTGATTGGGAAAGCAATCTAACTGAATTTAATTCAAATTTTTGGTCCAGGAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGC</genome_strand>
        <mrna_strand>GTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAATCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCTTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCAGCTCAGGCTTTGG..................................................................................GTCATGCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGG.........................................................................................................................................................................GCTTTGTCAAAGACATTGACAGTAGATGAGCTATTCTATTTGAAGGAGCAGTTTGCACTGCTACAACCAAGCAAAAATGGCACCATAAGCTTCGACAATGTCAAAACG..................................................................................GCCCTGATGAAACATGCAACAGATGCAATGAAGGAAGCTCGCATCCATGATTTTCTTGCATCG..........................................................................................CTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCAGCGGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGGTGGGAAC-ACATGCACGTTGTGCCTATGAAATCTTCGAGAAGGAAGGCAATACGGCCATTATGATAGAAGAAATAGCTTCG.....................................................................................................................................................GAACTTGGTCTTAGCCCCTTCGGTCCTGTCCATGCTGNTCTACATGACTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457776" ref_strand="+" ref_description="SGN-E457776 [cPRO-3-N21]">
      <seq>gtttggagtataggtgtcatagcatatatcctattgtgtggaagccgtcctttttgggctcgaacagaatctgggatatttaggtctgtcctcaaagctgatccaagttttgaagaacagccttggcctacattatcttctgaggcgaaagactttgtgaaacgtctattgaataaggatccccggaaaagaatgactgcagctcaggctttgggtcatgcatggataaagaatagtcacaacatagaagtgcctttggatattctgatattcaaactgatgaaggcttacatgcggtcctctgctcttaggaaagctgcactacgggcttttgtcaagacattgacagtagatgagctattctatttgaaggagcagtttgcactgctacacccaagcaaaatggcaccataagcttcgacnatgtcaaacgggccctgatgaacatgcaacagatgcaatgaaggaagctcgcatccatgattttcttgcatcgcttaatgcgctgcagtacagggagatggattttgaagaattttgtgcagcggcattaagtggtcatcagcttgagggctttgatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="88773" stop="90379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89073" g_stop="89286" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89287" i_stop="89368" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89369" g_stop="89481" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="327" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89482" i_stop="89650" i_length="169">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89651" g_stop="89758" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="434" r_length="107" r_score="0.907"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89759" i_stop="89840" i_length="82">
            <donor d_prob="0.866" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89841" g_stop="89903" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="496" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89904" i_stop="89993" i_length="90">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89994" g_stop="90079" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="582" r_length="86" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E457776" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89073" e_stop="89286"/>
          <exon e_start="89369" e_stop="89481"/>
          <exon e_start="89651" e_stop="89758"/>
          <exon e_start="89841" e_stop="89903"/>
          <exon e_start="89994" e_stop="90079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCCTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCTGCTCAGGCTTTGGGTGAGTTTCTTGAGTTATATTGGAAAATACAATCTTTTGTTCTTTAAATTTCTGCAAACTGCTGAACTACTTACTGTCTCAGGTCATCCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGGGTGTGTATGATGCTACCATGAAAAGTTTTTGTGTTCCCATTTTATCTTCCGAGTCCAGTGCTATATGTCAAGTAATGAAGCTCTATTTTGTACCGCATAGTATTTGCTGAAATTCTGACTAATCTTTTGCATTGTTCTTCATGGCATTGTCATTCTACAATTTTTGCAGGC-TTTGTCGAAGACATTGACAGTAGATGAGCTATTCTATTTGAAGGAGCAGTTTGCACTGCTACAACCAAGCAAAAATGGCACCATAAGCTTTGACCATGTTAAAACGGTTTGTCTTTTGGAATAAAGAACGATTTATTAGTTTCTTCTTGTATCTTTCATGTTTTTGCTGATCTTCATGATTTTACCAGGTCCTGATGAAACATGCAACAGATGCAATGAAAGAAGCTCGCATCCATGATTTTCTTGCATCGGTAGATTTTGAGATCCTATTGACTTCAGATATTTAACTGGTGTTGTCATTGTTATGGGTTTAATAAATACTCCTTGTTCTTGTCATGCAGCTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCG</genome_strand>
        <mrna_strand>GTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCTTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCAGCTCAGGCTTTGG..................................................................................GTCATGCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGG.........................................................................................................................................................................GCTTTTGTC-AAGACATTGACAGTAGATGAGCTATTCTATTTGAAGGAGCAGTTTGCACTGCTACACCCAAGC-AAAATGGCACCATAAGCTTCGACNATGTCAAACGG..................................................................................GCCCTGATG-AACATGCAACAGATGCAATGAAGGAAGCTCGCATCCATGATTTTCTTGCATCG..........................................................................................CTTAATGCGCTGCAGTACAGGGAGATGGATTTTGAAGAATTTTGTGCAGCGGCATTAAGTGGTCATCAGCTTGAGGGCTTTGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425748" ref_strand="-" ref_description="SGN-E425748 [STM-45-D15]">
      <seq>caaaacggccctgatgaaacatgcaacagatgcaatgaaggaagctcgcatccatgattttcttgcatcgcttaatgcgctgcagtacaggaggatggattttgaagaattttgtgcagcggcattaagtgttcatcagcttgaggcttttgatcggtgggaacaacatgcacgttgtgcctatgaaatcttcgagaaggaaggcaatagggccattatgatagaagaattagcttcggaacttggtcttagcccgtcggttcctgtccatgctgttctacatgactggctcaggcacactgacggaaagctcagttttcttggttttgcaaagttgttgcatggagtgtctagccgttcaattacaaaagttcaatgattcaggccccactgaatcagaaaatggttctcttggtgtatccacattctcgttatgaatgctatgtttggcagtcaaatgaccttggagtgaagaatgacgaagatcaacttatgtccctcattctggagcttcatagatctcattattttttcagggactagtatgagattccatggaacaactttccaggagaggatgagaggtttgactgccgtgtgttatcagagcagtgacatcctgcatatagagttcttactgtaaagctgtagttagttatgtttgattgcaggtgagagtacttctcagctggtttttggtcacacactaggtgttttaacctgttggacatgcggagaagtctacaattgtattggtaaaaagattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="89536" stop="91123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89752" g_stop="89758" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89759" i_stop="89840" i_length="82">
            <donor d_prob="0.866" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89841" g_stop="89903" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="70" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89904" i_stop="89993" i_length="90">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89994" g_stop="90161" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="238" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90162" i_stop="90310" i_length="149">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90311" g_stop="90832" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="768" r_length="530" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E425748" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425748" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89752" e_stop="89758"/>
          <exon e_start="89841" e_stop="89903"/>
          <exon e_start="89994" e_stop="90161"/>
          <exon e_start="90311" e_stop="90832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACGGTTTGTCTTTTGGAATAAAGAACGATTTATTAGTTTCTTCTTGTATCTTTCATGTTTTTGCTGATCTTCATGATTTTACCAGGTCCTGATGAAACATGCAACAGATGCAATGAAAGAAGCTCGCATCCATGATTTTCTTGCATCGGTAGATTTTGAGATCCTATTGACTTCAGATATTTAACTGGTGTTGTCATTGTTATGGGTTTAATAAATACTCCTTGTTCTTGTCATGCAGCTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCGGTAATCATGGTTCATTTTTTGTTCTGAATATTGATTGCCACGTGTTAGTCTCTTATATAACTGTCTCGTTTTTTCCTTTTCGGGAGAGGAGAGTGTGCAATTGATTGGGAAAGCAATCTAACTGAATTTAATTCAAATTTTTGGTCCAGGAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTCAAGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCTACATTCTTGTCATGAATACATTGTTTGACAGTCAAATGAGCTTGGGAGTGACGAATGGAGAAGATCAATTTATGCCCCTCAGTCTGGAGCTTCATAGATCTCATTA--TTTT------CT--CATGAGATTCCGCGGAACATCATTCCTGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCGCACACTAGGTGTTTTAACTTGTTGGACATGCGCTGATGTCTACAATTGCATTGTGTAATGTTGTCTG</genome_strand>
        <mrna_strand>CAAAACG..................................................................................GCCCTGATGAAACATGCAACAGATGCAATGAAGGAAGCTCGCATCCATGATTTTCTTGCATCG..........................................................................................CTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCAGCGGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGGTGGGAACAACATGCACGTTGTGCCTATGAAATCTTCGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCG.....................................................................................................................................................GAACTTGGTCTTAGCCCGTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTACAAAAGTTCAATGATTCAGGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCCACATTCTCGTTATGAATGCTATGTTTGGCAGTCAAATGACCTT-GGAGTGAAGAATGACGAAGATCAACTTATGTCCCTCATTCTGGAGCTTCATAGATCTCATTATTTTTTCAGGGACTAGTATGAGATTCCATGGAACAACTTTCCAGGAGAGGATGAGAGGTTTGACTGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCACACACTAGGTGTTTTAACCTGTTGGACATGCGGAGAAGTCTACAATTGTATTG-GTAAAAAGATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429701" ref_strand="-" ref_description="SGN-E429701 [STM-52-B23]">
      <seq>tgcaacagatgcaatgaaggaagctcgcatccatgattttcttgcatcgcttaatgcgctgcagtacaggaggatggattttgaagaattttgtgcagcggcattaagtgttcatcagcttgaggcttttgatcggtgggaacaacatgcacgttgtgcctatgaaatcttcgagaaggaaggcaatagggccattatgatagaagaattagcttcggaacttggtcttagcccttcggttcctgtccatgctgttctacatgactggctcaggcacactgacggaaagctcagttttcttggttttgcaaagttgttgcatggagtgtctagccgttcaattacaaaagttcaatgattcaggccccactgaatcagaaaatggttctcttggtgtatccacattctcgttatgaatgctatgtttggcagtcaaatgaccttggagtaaagaatgacgcagatcaacttatgtccctcattctggagcttcatagatctcattgttttttcagggactagtatgagattccatggaacaactttccaggagaggatgagaggtttgaccgccgtgtgttatcagagcagtgacatcctgcatatagagttcttactgtaaagctgtagttagttatgtttgattgcaggtgagagtacttctcagctggtttttggtcacacactaggtgttttaacctgttggacatgcgcagatgtctacaattgtattggtaaaaaagagaaaaaaaaactcgagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="89555" stop="91123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89855" g_stop="89903" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89904" i_stop="89993" i_length="90">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89994" g_stop="90161" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="217" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90162" i_stop="90310" i_length="149">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90311" g_stop="90817" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="733" r_length="516" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E429701" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429701" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89855" e_stop="89903"/>
          <exon e_start="89994" e_stop="90161"/>
          <exon e_start="90311" e_stop="90817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACAGATGCAATGAAAGAAGCTCGCATCCATGATTTTCTTGCATCGGTAGATTTTGAGATCCTATTGACTTCAGATATTTAACTGGTGTTGTCATTGTTATGGGTTTAATAAATACTCCTTGTTCTTGTCATGCAGCTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCGGTAATCATGGTTCATTTTTTGTTCTGAATATTGATTGCCACGTGTTAGTCTCTTATATAACTGTCTCGTTTTTTCCTTTTCGGGAGAGGAGAGTGTGCAATTGATTGGGAAAGCAATCTAACTGAATTTAATTCAAATTTTTGGTCCAGGAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTCAAGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCTACATTCTTGTCATGAATACATTGTTTGACAGTCAAATGAGCTTGGGAGTGACGAATGGAGAAGATCAATTTATGCCCCTCAGTCTGGAGCTTCATAGATCTCA-T-TATTTT------CT--CATGAGATTCCGCGGAACATCATTCCTGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCGCACACTAGGTGTTTTAACTTGTTGGACATGCGCTGATGTCTACAATTGCATT</genome_strand>
        <mrna_strand>TGCAACAGATGCAATGAAGGAAGCTCGCATCCATGATTTTCTTGCATCG..........................................................................................CTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCAGCGGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGGTGGGAACAACATGCACGTTGTGCCTATGAAATCTTCGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCG.....................................................................................................................................................GAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTACAAAAGTTCAATGATTCAGGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCCACATTCTCGTTATGAATGCTATGTTTGGCAGTCAAATGACCTT-GGAGTAAAGAATGACGCAGATCAACTTATGTCCCTCATTCTGGAGCTTCATAGATCTCATTGTTTTTTCAGGGACTAGTATGAGATTCCATGGAACAACTTTCCAGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCACACACTAGGTGTTTTAACCTGTTGGACATGCGCAGATGTCTACAATTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332856" ref_strand="-" ref_description="SGN-E332856 [cTOD-19-A13]">
      <seq>aaagaagctcgcatccatgattttcttgcatcgcttaatgcgctgcagtacaggaggatgggattttgaagaatttgntgctgctgcattaagtgttcatcagcttgaggcttttgatcgttgggaacaacatgcacgttgtgcntatgaatcttngagaaggaaggcaatagggccattatgatagaagaattagcttcggaacttggtcttagcccttcggttcctgtccatgctgttctacatgactggctcaggcacactgacggaaagctcagttttcttggttttgcaaagttgttgcatggagtgtctagccgttcaattgcaaaagttcaatgattcaagccccactgaatcagaaaatggttctcttggtgtatctacattcttgtcatgaatacattgtttgacagtcaaatgagcttgggagtgacgaatggagaagatcaatttatgcccctcagtctggagcttcatagatctcattattttctcatgagattccgcggaacatcattcctggagaggatgagaggtttgaccgccgtgtgttatcagagcagtgacatcctgcatatagagttcttactgtaaagctgtagttagttatgtttgattgcaggtgagagtacttctcagctggtttttggtcgcacactaggtgttttaacttgttggacatgcgctgatgtctacaattgcattgtgtaatgttgtctgcatgtttttatagttaagaagttccaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="89571" stop="91161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89871" g_stop="89903" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89904" i_stop="89993" i_length="90">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89994" g_stop="90161" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="201" r_length="168" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90162" i_stop="90310" i_length="149">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90311" g_stop="90863" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="754" r_length="553" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E332856" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332856" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89871" e_stop="89903"/>
          <exon e_start="89994" e_stop="90161"/>
          <exon e_start="90311" e_stop="90863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGCTCGCATCCATGATTTTCTTGCATCGGTAGATTTTGAGATCCTATTGACTTCAGATATTTAACTGGTGTTGTCATTGTTATGGGTTTAATAAATACTCCTTGTTCTTGTCATGCAGCTTAATGCGCTGCAGTACAGGAGGAT-GGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCGGTAATCATGGTTCATTTTTTGTTCTGAATATTGATTGCCACGTGTTAGTCTCTTATATAACTGTCTCGTTTTTTCCTTTTCGGGAGAGGAGAGTGTGCAATTGATTGGGAAAGCAATCTAACTGAATTTAATTCAAATTTTTGGTCCAGGAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTCAAGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCTACATTCTTGTCATGAATACATTGTTTGACAGTCAAATGAGCTTGGGAGTGACGAATGGAGAAGATCAATTTATGCCCCTCAGTCTGGAGCTTCATAGATCTCATTATTTTCTCATGAGATTCCGCGGAACATCATTCCTGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCGCACACTAGGTGTTTTAACTTGTTGGACATGCGCTGATGTCTACAATTGCATTGTGTAATGTTGTCTGCATGTTTTTATAGTTAAGAAGTTCCACCACT</genome_strand>
        <mrna_strand>AAAGAAGCTCGCATCCATGATTTTCTTGCATCG..........................................................................................CTTAATGCGCTGCAGTACAGGAGGATGGGATTTTGAAGAATTTGNTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCNTATG-AATCTTNGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCG.....................................................................................................................................................GAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTCAAGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCTACATTCTTGTCATGAATACATTGTTTGACAGTCAAATGAGCTTGGGAGTGACGAATGGAGAAGATCAATTTATGCCCCTCAGTCTGGAGCTTCATAGATCTCATTATTTTCTCATGAGATTCCGCGGAACATCATTCCTGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCGCACACTAGGTGTTTTAACTTGTTGGACATGCGCTGATGTCTACAATTGCATTGTGTAATGTTGTCTGCATGTTTTTATAGTTAAGAAGTTCCACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332560" ref_strand="-" ref_description="SGN-E332560 [cTOD-18-O3]">
      <seq>tcgcttaatgcgctgcagtacaggaggatggatttgaagaattttgtgctgctgcattaagtgttcatcagctgagggctttngatcgttgggaacaacatgcacgttgtgcntatgaaatctttgagaaggaaggcaatagggccattatgatagaagaattagcttcggaacttggtcttagcccttcggttcctgtccatgctgttctacatgactggctcaggcacactgacggaaagctcagttttcttggttttgcaaagttgttgcatggagtgtctagccgttcaattgcaaaagttcaatgattcaagccccactgaatcagaaaatggttctcttggtgtatctacattcttgtcatgaatacattgtttgacagtcaaatgagcttgggagtgacgaatggagaagatcaatttatgcccctcagtctggagcttcatagatctcattattttctcatgagattccgcggaacatcattcctggagaggatgagaggtttgaccgccgtgtgttatcagagcagtgacatcctgcatatagagttcttactgtaaagctgtagttagttatgtttgattgcaggtgagagtacttctcagctggtttttggtcgcacactaggtgttttaacttgttggacatgcgctgatgtctacaattgcattgtgtaatgttgtctgcatgtttttatagttaagaagttccaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="89693" stop="91161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89901" g_stop="89903" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89904" i_stop="89993" i_length="90">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89994" g_stop="90161" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="170" r_length="167" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90162" i_stop="90310" i_length="149">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90311" g_stop="90863" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="723" r_length="553" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E332560" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332560" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89901" e_stop="89903"/>
          <exon e_start="89994" e_stop="90161"/>
          <exon e_start="90311" e_stop="90863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTAGATTTTGAGATCCTATTGACTTCAGATATTTAACTGGTGTTGTCATTGTTATGGGTTTAATAAATACTCCTTGTTCTTGTCATGCAGCTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCGGTAATCATGGTTCATTTTTTGTTCTGAATATTGATTGCCACGTGTTAGTCTCTTATATAACTGTCTCGTTTTTTCCTTTTCGGGAGAGGAGAGTGTGCAATTGATTGGGAAAGCAATCTAACTGAATTTAATTCAAATTTTTGGTCCAGGAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTCAAGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCTACATTCTTGTCATGAATACATTGTTTGACAGTCAAATGAGCTTGGGAGTGACGAATGGAGAAGATCAATTTATGCCCCTCAGTCTGGAGCTTCATAGATCTCATTATTTTCTCATGAGATTCCGCGGAACATCATTCCTGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCGCACACTAGGTGTTTTAACTTGTTGGACATGCGCTGATGTCTACAATTGCATTGTGTAATGTTGTCTGCATGTTTTTATAGTTAAGAAGTTCCACCACT</genome_strand>
        <mrna_strand>TCG..........................................................................................CTTAATGCGCTGCAGTACAGGAGGATGGATT-TGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTGAGGGCTTTNGATCGTTGGGAACAACATGCACGTTGTGCNTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCG.....................................................................................................................................................GAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTCAAGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCTACATTCTTGTCATGAATACATTGTTTGACAGTCAAATGAGCTTGGGAGTGACGAATGGAGAAGATCAATTTATGCCCCTCAGTCTGGAGCTTCATAGATCTCATTATTTTCTCATGAGATTCCGCGGAACATCATTCCTGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCGCACACTAGGTGTTTTAACTTGTTGGACATGCGCTGATGTCTACAATTGCATTGTGTAATGTTGTCTGCATGTTTTTATAGTTAAGAAGTTCCACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213554" ref_strand="+" ref_description="SGN-E213554 [cLEC-71-H13]">
      <seq>tttattttaacatgtaatatgtggaatatggatggacagattttatctacaccctctttttatttgtagacatcttaataaagagtttactctatttagtgtcatgtcatgggatatgaaaacgcatcaaatctttgtagttcgtcttgactttgtatttatgtatactatgcacactctgtagagtttcacattctcatggatttgactctttttgtgattcaaatacatttggtatactcactaattagtaatgttggatccttgctcacctacttgtattgttgagtgatgcatgtaactgagaaaaataattaaattccagaaacagaacaagggggagccaaaccatgaaaaagggaaacacattcaacttctaattttcaagactaaaggtacaatttcacatcctttttcaggcttttgaaattgtaggtctctttttcttgaaatcgaaccgcaatgttctattttgaatggtgttgtagtagtatttagtagttattcttggatagaagttacaactttagtattagatacaaaaaagtttaaaatacttcacatgtagagtcgactttatagcagttctgggattgagagactaatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="94073" stop="92863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93773" g_stop="93163" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E213554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93773" e_stop="93163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTTAACATGTAATATGTGGAATATGGATGGACAGATTTTATCTACACCCTCTTTTTATTTGTAGACATCTTAATAAAGAGTTTACTCTATTTAGTGTCATGTCATGGGATATGAAAACGCATCAAATCTTTGTAGTTCGTCTTGACTTTGTATTTATGTATACTATGCACACTCTGTAGAGTTTCACATTCTCATGGATTTGACTCTTTTTGTGATTCAAATACATTTGGTATACTCACTAATTAGTAATGTTGGATCCTTGCTCACCTACTTGTATTGTTGAGTGATGCATGTAACTGAGAAAAATAATTAAATTCCAGAAACAGAACAAGGGGGAGCCAAACCATGAAAAAGGGAAACACATTCAACTTCTAATTTTCAAGACTAAAGGTACAATTTCACATCCTTTTTCAGGCTTTTGAAATTGTAGGTCTCTTTTTCTTGAAATCGAACCGCAATGTTCTATTTTGAATGGTGTTGTAGTAGTATTTAGTAGTTATTCTTGGATAGAAGTTACAACTTTAGTATTAGATACAAAAAAGTTTAAAATACTTCACATGTAGAGTCGACTTTATAGCAGTTCTGGGATTGAGAGACTAATGATGG</genome_strand>
        <mrna_strand>TTTATTTTAACATGTAATATGTGGAATATGGATGGACAGATTTTATCTACACCCTCTTTTTATTTGTAGACATCTTAATAAAGAGTTTACTCTATTTAGTGTCATGTCATGGGATATGAAAACGCATCAAATCTTTGTAGTTCGTCTTGACTTTGTATTTATGTATACTATGCACACTCTGTAGAGTTTCACATTCTCATGGATTTGACTCTTTTTGTGATTCAAATACATTTGGTATACTCACTAATTAGTAATGTTGGATCCTTGCTCACCTACTTGTATTGTTGAGTGATGCATGTAACTGAGAAAAATAATTAAATTCCAGAAACAGAACAAGGGGGAGCCAAACCATGAAAAAGGGAAACACATTCAACTTCTAATTTTCAAGACTAAAGGTACAATTTCACATCCTTTTTCAGGCTTTTGAAATTGTAGGTCTCTTTTTCTTGAAATCGAACCGCAATGTTCTATTTTGAATGGTGTTGTAGTAGTATTTAGTAGTTATTCTTGGATAGAAGTTACAACTTTAGTATTAGATACAAAAAAGTTTAAAATACTTCACATGTAGAGTCGACTTTATAGCAGTTCTGGGATTGAGAGACTAATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372869" ref_strand="+" ref_description="SGN-E372869 [TUS-32-N20](-)">
      <seq>agaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctttaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="95480" stop="94635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95180" g_stop="94941" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="243" polyA_stop="263"/>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E372869" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95180" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTACAAAGGTGAGAAAAGAAGAGTGACGCATCACATAGAAAAATAATTTGTGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTATAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCCTTGTTTTCCCCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>AGAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTTTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298763" ref_strand="+" ref_description="SGN-E298763 [cLET-44-E9]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="95479" stop="94640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95179" g_stop="94941" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E298763" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95179" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGTGAGAAAAGAAGAGTGACGCATCACATAGAAAAATAATTTGTGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTATAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCCTTGTTTTCCCCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372870" ref_strand="+" ref_description="SGN-E372870 [TUS-32-N20]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="95479" stop="94635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95179" g_stop="94941" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="242" polyA_stop="263"/>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E372870" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95179" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGTGAGAAAAGAAGAGTGACGCATCACATAGAAAAATAATTTGTGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTATAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCCTTGTTTTCCCCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378778" ref_strand="+" ref_description="SGN-E378778 [TUS-32-N20]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="95479" stop="94635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95179" g_stop="94941" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="242" polyA_stop="263"/>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E378778" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95179" e_stop="94941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGTGAGAAAAGAAGAGTGACGCATCACATAGAAAAATAATTTGTGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTATAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCCTTGTTTTCCCCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203269" ref_strand="+" ref_description="SGN-E203269 [cLEB-3-K20]">
      <seq>gcacgagaaggagtagggcaaaacgttgtgtgattgagatttcctcttcttccgagcaagaaaatggtgacgatgaaggaggaggagaaagttcagaagaatcagtacaaatattaggatcggatgacgattttgatgccgctagtacatatgattttgacgactctgcctcaagcgagagcaacggtgattccgaagatgaggaggaagacgagtcttccccgtctcaacaacatggtgatgaggatatccaagaggaaggtgaggaatcgggtagcgaaagagtgcttcagcttctccaaggtggtggagaattgaggaagctaattgaaggattggggaagctcgctttgacggactataaagcatatttgcgatcaaatggattgaggttatcaagtacaaaagaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="96424" stop="98175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96719" g_stop="96893" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96894" i_stop="96988" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96989" g_stop="97116" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="303" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97117" i_stop="97763" i_length="647">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97764" g_stop="97875" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="415" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E203269" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96719" e_stop="96893"/>
          <exon e_start="96989" e_stop="97116"/>
          <exon e_start="97764" e_stop="97875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGAAAGGAGTAGGGCAAAACGTTGTGTGATTGAGATTTCCTCTTCTTCCGAGCAAGAAAATGGTGACGATGAAGGAGGAGGAGAAAGTTCAGAAGAATCAGTACAAATATTAGGATCGGATGACGATTTTGATGCCGCTAGTACATATGATTTTGACGACTCTGCCTCAAGGTATTGGTTTCCTATATTATGCCTCAATTCTAAACTAATTTTGCTAGGGTATATCAATGATTTATGTTCATATCAATTTTGGATTATTTGGCCAGCGAGAGCAACGGTGATTCCGAAGATGAGGAGGAAGACGAGTCTTCCCCGTCTCAACAACATGGTGATGAGGATATCCAAGAGGAAGGTGAGGAATCGGGTAGCGAAAGAGTGCTTCAGCTTCTCCAAGGTATGAAGATTTTCTGCCCTTAGGTTTCTGGTAATCTACTGATAAACTAAAGAAAACGAAGTTGCACTAAATCCCTATGTTTTTTGGGGAAACTTGATTGTTCTTCAACTAAATCCCTATGTTTTTTGTTTGTTGCTTTCTGCTAAATTGGGTTAAATGTTGGGGGGAAACGTCATGTGTTGTTTTTTAAAATTCTATTTCCCATCAAGAACAACTCATGACGTTTTCCAGGTGTTATTGGAGCCAAGTGAACATGAACAAATCTTTTTTATGGAAGTCCAGTTGATACTAGTTTTCCACATGAGCTTTTGTGGCCACAGAAAGGAAGGGTGCAAAGCAATATGGTTCCTATGTCCTGCCATTGGCCAGGATAGAACTGGTAAAAATTATATGTGAAGAAAATTTACTCATTATTCAAAAGAAAATTTGGGGTATTATCAATTATAATGTAAACTGTGGATCCTGACATTTATACACAGTGCACTTCTATACAAGGTTCATAACTTGATCTCTTTTCAAGGTGGAGATTAGGCAAATGCATAAATATTTTCCAACTATTTTCAAGTTTTCGTCGTATTTCGACTCTAAATTGGTTAGTTGCAGTATTCTCTAATATATGAATACATCACCTTTTGTGTGTTATATAGGTGGTGGAGAATTGAGGAAGCTAATTGAAGGATTGGGGAAGCTCGCTTTGACGGACTATAAAGCATATTTGCGATCAAATGGATTGAGGTTATCAGGTACAAAAGAAGAATG</genome_strand>
        <mrna_strand>GCACGAGAAGGAGTAGGGCAAAACGTTGTGTGATTGAGATTTCCTCTTCTTCCGAGCAAGAAAATGGTGACGATGAAGGAGGAGGAGAAAGTTCAGAAGAATCAGTACAAATATTAGGATCGGATGACGATTTTGATGCCGCTAGTACATATGATTTTGACGACTCTGCCTCAAG...............................................................................................CGAGAGCAACGGTGATTCCGAAGATGAGGAGGAAGACGAGTCTTCCCCGTCTCAACAACATGGTGATGAGGATATCCAAGAGGAAGGTGAGGAATCGGGTAGCGAAAGAGTGCTTCAGCTTCTCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAGAATTGAGGAAGCTAATTGAAGGATTGGGGAAGCTCGCTTTGACGGACTATAAAGCATATTTGCGATCAAATGGATTGAGGTTATCAAGTACAAAAGAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451046" ref_strand="+" ref_description="SGN-E451046 [cSTS-11-G10]">
      <seq>aagttgacgttgatggactataaagcatatttgcgatcaaatgggttgaggttatcaggtacaaaagaagaatgtatacagaggatcatagagcactggaggattaaagatggaaatggtcaaagacaatatcccagatcatcttttaccataaactgcaccggtgacgtatgtaaaggagatgttgtattattcaaacagaaagtgtacaagaattttgacaagatggcaaggggtggagaacaattagggaagagaaccattggtggtaggattgtcaaggagagctatggcgctgccaaacagcagcatacctttacggttgaggtgttatggagcctaggggttaaacaattacctccactttttccattgcttgtgaagggacgaaacctttataaattgaacactttcagacagaaatggaaggatgaagaggaaagactagaagtgctcgcagagaagcacaaacgtggagatgcagcaagatttattagagcaacaagaatatcaaaatcaacaaagccgacaaaagcatcctctaaaaataaaggtaacaagcgccagaaacttgatcatcataggaggccaagcgaaatgatgcggacaagcaatgtaaagaaacattattattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="97502" stop="99820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97802" g_stop="97902" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97903" i_stop="98384" i_length="482">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98385" g_stop="98446" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="163" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98447" i_stop="98567" i_length="121">
            <donor d_prob="0.164" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98568" g_stop="98619" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="215" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98620" i_stop="98710" i_length="91">
            <donor d_prob="0.071" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98711" g_stop="98816" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="321" r_length="106" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98817" i_stop="99024" i_length="208">
            <donor d_prob="0.479" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99025" g_stop="99123" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="420" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99124" i_stop="99207" i_length="84">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99208" g_stop="99340" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="553" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="99341" i_stop="99438" i_length="98">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99439" g_stop="99520" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="635" r_length="82" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E451046" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97802" e_stop="97902"/>
          <exon e_start="98385" e_stop="98446"/>
          <exon e_start="98568" e_stop="98619"/>
          <exon e_start="98711" e_stop="98816"/>
          <exon e_start="99025" e_stop="99123"/>
          <exon e_start="99208" e_stop="99340"/>
          <exon e_start="99439" e_stop="99520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCGCTTTGACGGACTATAAAGCATATTTGCGATCAAATGGATTGAGGTTATCAGGTACAAAAGAAGAATGTATACAGAGGATCATAGAGCACTGGAGGTACGTCTTAGTGTAAGATGTAAACCTGATATATTTAAATGCAGCACTATATATATATATATTTTTTTTTTTTTGTGGTACAAGGATGGATCTCATTAATAGCTTGAGCTTCAAGCATTCAGATTGCCAAGTATGAGCAGCCAGCTTGAGATTGCATAAGAATATTTAAGAAAATGGGAGAAAACTTTAAAAATTACTGGTGCATATAGTCAAGCAAGTTAAAAACCCTGGTTTGCATCATTAGAGACTAGAAGTGCTCCATGACTTTGTTCCTACTTTATCATTCTAAATTTGCAACTGACTGCAAAAGTTCCGTTCTAAATCATACTGAAAATTCAACTAACTAGAAGTTGTGTTTTGGATTAATTGTAAATATGATCTTGTCACTCCATATTTTGAACTGTATTGTACCTTTTCCCAGTAGTCTTTCGTTCTTTTCCTCCTATGCTAATGGGAAGTCTTATTGCTTCATTTGTACACAGGATTAAAGATGGAAATGGTCAAAGACAATATCCCAGATCATCTTTTACCATAAACTGCACTGGTAGTTAATATTTGGCATCAGCCATCAATGACACCTCAGGATCTCTGTTTCATCTATGCTTCTTGTACTTCCCCTTTTGTTTTTGATCTTTGAGTGTTTAGGTTGGTGATTCCATGTGCAGGTGACGTATGTAAAGGAGATGTTGTATTATTTCAACAGAAAGTGTACAAGAAGTATTCACCTAATCGATTCTCCTGTTTGTTTCACAGTTTGTCAGTGTAGAGTGGTCTTTGCCTTTTGGATTAATCATGTTGTGTTTTGAAGGTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAGAGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACGGTAAGGCTCAAGAGAGAGTTTGAGCTCACTGAGATATCTGATTACAAGTGAAATAAACTTTTTCTGGGTGAGACTGAGAAATTATGGATATAAGCTTTCTTGAACACCTAGCAGTCTAGCACTATCAGTCTTCTAATAACCCTTTTGTGCAATTTCATATGCAAAGTTCTGCTAAATATATCTCCATCTACTTTTTGTGATTAACAAGGTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAGGTGAACCTGCCAGCCATTCTGGAGTACCTGTAGTTCTTATCAGATATTCTATCATTTTAACTGTTATTGCTGCTGGATAATCAGAGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAGGTGCATTTTACGGAAATTAAATTGATGCATCACCAGCTTTTCACTCAATACACACTAAAACTTTATGTTTACTGTAATGTAGTTTTTGTTACATGTAGGTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTC</genome_strand>
        <mrna_strand>AAGTTGACGTTGATGGACTATAAAGCATATTTGCGATCAAATGGGTTGAGGTTATCAGGTACAAAAGAAGAATGTATACAGAGGATCATAGAGCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAAGATGGAAATGGTCAAAGACAATATCCCAGATCATCTTTTACCATAAACTGCACCG.........................................................................................................................GTGACGTATGTAAAGGAGATGTTGTATTATTCAAACAGAAAGTGTACAAGAA...........................................................................................TTTTGACAAGATGGCAAGGGGTGGAGAACAATTAGGGAAGAGAACCATTGGTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACG................................................................................................................................................................................................................GTTGAGGTGTTATGGAGCCTAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAATTGAACACTTTCAGACAG....................................................................................AAATGGAAGGATGAAGAGGAAAGACTAGAAGTGCTCGCAGAGAAGCACAAACGTGGAGATGCAGCAAGATTTATTAGAGCAACAAGAATATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAATAAAG..................................................................................................GTAACAAGCGCCAGAAACTTGATCATCATAGGAGGCCAAGCGAAATGATGCGGACAAGCAATGTAAAGAAACATTATTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236405" ref_strand="+" ref_description="SGN-E236405 [cLED-13-M6]">
      <seq>ttaccataaactgcactggtagttaatatttggcatcagccatcaatgacacctcaggatctctgtttcatctatgcttcttgtacttccccttttgtttttgatctttgagtgtttaggttggtgattccatgtgcaggtgacgtatgtaaaggagatgttgtattatttcaacagaaagtgtacaagaagtttgaaaagatgagaaggggtggagaacaatcagggaagagaaccattgctggtaggattgtcaaggagagctatggcgctgccaaacagcagcatacctttacggttgaggtgttatggagccaaggggttaaacaattacctacactttttccattgcttgtgaagggacgaaacctttataagatgaagactttcagacagagatggagggatgaagaggaaagactagaagtgctcggagagaagcacaaacgtggagatgcagcgagatttattagagcaacaagaaaatcaaaatcaacaaagccgacaaaagcatcctctaaaaacaaaggtaacaagcgccagaaacttgatcatcatatgaggccaagcaaaatgatgcagacaagcaatgtaaagaaacataatcattctattgatgaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="98129" stop="99833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98429" g_stop="98619" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98620" i_stop="98710" i_length="91">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98711" g_stop="98816" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="297" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98817" i_stop="99024" i_length="208">
            <donor d_prob="0.479" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99025" g_stop="99123" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="396" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99124" i_stop="99207" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99208" g_stop="99340" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="529" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99341" i_stop="99438" i_length="98">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99439" g_stop="99533" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="624" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E236405" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98429" e_stop="98619"/>
          <exon e_start="98711" e_stop="98816"/>
          <exon e_start="99025" e_stop="99123"/>
          <exon e_start="99208" e_stop="99340"/>
          <exon e_start="99439" e_stop="99533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCATAAACTGCACTGGTAGTTAATATTTGGCATCAGCCATCAATGACACCTCAGGATCTCTGTTTCATCTATGCTTCTTGTACTTCCCCTTTTGTTTTTGATCTTTGAGTGTTTAGGTTGGTGATTCCATGTGCAGGTGACGTATGTAAAGGAGATGTTGTATTATTTCAACAGAAAGTGTACAAGAAGTATTCACCTAATCGATTCTCCTGTTTGTTTCACAGTTTGTCAGTGTAGAGTGGTCTTTGCCTTTTGGATTAATCATGTTGTGTTTTGAAGGTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAGAGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACGGTAAGGCTCAAGAGAGAGTTTGAGCTCACTGAGATATCTGATTACAAGTGAAATAAACTTTTTCTGGGTGAGACTGAGAAATTATGGATATAAGCTTTCTTGAACACCTAGCAGTCTAGCACTATCAGTCTTCTAATAACCCTTTTGTGCAATTTCATATGCAAAGTTCTGCTAAATATATCTCCATCTACTTTTTGTGATTAACAAGGTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAGGTGAACCTGCCAGCCATTCTGGAGTACCTGTAGTTCTTATCAGATATTCTATCATTTTAACTGTTATTGCTGCTGGATAATCAGAGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAGGTGCATTTTACGGAAATTAAATTGATGCATCACCAGCTTTTCACTCAATACACACTAAAACTTTATGTTTACTGTAATGTAGTTTTTGTTACATGTAGGTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGT</genome_strand>
        <mrna_strand>TTACCATAAACTGCACTGGTAGTTAATATTTGGCATCAGCCATCAATGACACCTCAGGATCTCTGTTTCATCTATGCTTCTTGTACTTCCCCTTTTGTTTTTGATCTTTGAGTGTTTAGGTTGGTGATTCCATGTGCAGGTGACGTATGTAAAGGAGATGTTGTATTATTTCAACAGAAAGTGTACAAGAA...........................................................................................GTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAGAGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACG................................................................................................................................................................................................................GTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTACACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAG....................................................................................AGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAG..................................................................................................GTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414634" ref_strand="+" ref_description="SGN-E414634 [STM-19-J16]">
      <seq>tgccttttggattaatcatgtcgtgttttgaagttttgacaagatggcaaggggtggagaacaattagggaagaagaaccattggtggtaggattgtcaaggagagctatggcgctgccaaacagcagcatacctttacggttgaggtgttatggagcctaggggttaaacaattacctccactttttccattgcttgtgaagggacgaaacctttataaattgaacactttcatacagaaatggaaggatgaagaggaaagactagaagtgctcgcagagaagcacaaacgtggagatgcagcaagatttattagagcaacaagaatatcaaaatcaacaaagccgacaaaagcatcctctaaaaataaaggtaacaagcgccagaaacttgatcatcataggaggccaagcgaaatgatgcggacaagcaatgtaaagaaacattattattctattgatgaacgtgggaaagcaatggcaggaagtaaaagaacgaaaaaccaccagcgaaagcctcatccaccacgaagattgaatttggcagagtccagaaacagtagaccccctatgacgaatccaaactctgtgtctgccattagagagacctcattgcagttcacttatcctgcagcaaataattcccgccattttgaatcagattcttacagccaaagagtaccatattcttattcatcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="98378" stop="100067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98678" g_stop="98816" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98817" i_stop="99024" i_length="208">
            <donor d_prob="0.479" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99025" g_stop="99123" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="239" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99124" i_stop="99207" i_length="84">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99208" g_stop="99340" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="372" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99341" i_stop="99438" i_length="98">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99439" g_stop="99767" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="701" r_length="329" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E414634" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98678" e_stop="98816"/>
          <exon e_start="99025" e_stop="99123"/>
          <exon e_start="99208" e_stop="99340"/>
          <exon e_start="99439" e_stop="99767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTTTGGATTAATCATGTTGTGTTTTGAAGGTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAG-AGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACGGTAAGGCTCAAGAGAGAGTTTGAGCTCACTGAGATATCTGATTACAAGTGAAATAAACTTTTTCTGGGTGAGACTGAGAAATTATGGATATAAGCTTTCTTGAACACCTAGCAGTCTAGCACTATCAGTCTTCTAATAACCCTTTTGTGCAATTTCATATGCAAAGTTCTGCTAAATATATCTCCATCTACTTTTTGTGATTAACAAGGTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAGGTGAACCTGCCAGCCATTCTGGAGTACCTGTAGTTCTTATCAGATATTCTATCATTTTAACTGTTATTGCTGCTGGATAATCAGAGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAGGTGCATTTTACGGAAATTAAATTGATGCATCACCAGCTTTTCACTCAATACACACTAAAACTTTATGTTTACTGTAATGTAGTTTTTGTTACATGTAGGTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAAACATCAGCGAAAGCCTTATCCACCAGGAAGATTGAATTTGGCAGAGGCCAGTAACTGTAAACCCCCTATGAGGAATCCAAGCTTTGTGCCTGCCGGTAGGGAGACCTCATTGCAGTTCAATTATCCTCCAGCAACTAATTTTCGCCAATTTGAGTCATATTCTTACAGCCAAAGAATACAATATTCGCATTCATCTAAC</genome_strand>
        <mrna_strand>TGCCTTTTGGATTAATCATGTCGTGTTTTGAAGTTTTGACAAGATGGCAAGGGGTGGAGAACAATTAGGGAAGAAGAACCATTGGTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACG................................................................................................................................................................................................................GTTGAGGTGTTATGGAGCCTAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAATTGAACACTTTCATACAG....................................................................................AAATGGAAGGATGAAGAGGAAAGACTAGAAGTGCTCGCAGAGAAGCACAAACGTGGAGATGCAGCAAGATTTATTAGAGCAACAAGAATATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAATAAAG..................................................................................................GTAACAAGCGCCAGAAACTTGATCATCATAGGAGGCCAAGCGAAATGATGCGGACAAGCAATGTAAAGAAACATTATTATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAACCACCAGCGAAAGCCTCATCCACCACGAAGATTGAATTTGGCAGAGTCCAGAAACAGTAGACCCCCTATGACGAATCCAAACTCTGTGTCTGCCATTAGAGAGACCTCATTGCAGTTCACTTATCCTGCAGCAAATAATTCCCGCCATTTTGAATCAGATTCTTACAGCCAAAGAGTACCATATTCTTATTCATCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474196" ref_strand="+" ref_description="SGN-E474196 [cSTB-35-B18]">
      <seq>tgccttttggattaatcatgtcgtgttttgaagttttgacaagatggcaaggggtggagaacaattagggaagagaaccattggtggtaggattgtcaaggagagctatggcgctgccaaacagcagcatacctttacggttgaggtgttatggagcctaggggttaaacaattacctccactttttccattgcttgtgaagggacgaaacctttataaattgaacactttcagacagaaatggaaggatgaagaggaaagactagaagtgctcgcagagaagcacaaacgtggagatgcagcaagatttattagagcaacaagaatatcaaaatcaacaaagccgacaaaagcatcctctaaaaataaaggtaacaagcgccagaaacttgatcatcataggaggccaagcgaaatgatgcggacaagcaatgtaaagaaacattattattctattgatgaacgtgggaaagcaatggcaggaagtaaaagaacgaaaaaccaccagcgaaagcctcatccaccaggaagattgaatttggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="98378" stop="99912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98678" g_stop="98816" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98817" i_stop="99024" i_length="208">
            <donor d_prob="0.479" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99025" g_stop="99123" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="238" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99124" i_stop="99207" i_length="84">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99208" g_stop="99340" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="371" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99341" i_stop="99438" i_length="98">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99439" g_stop="99612" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="545" r_length="174" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E474196" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98678" e_stop="98816"/>
          <exon e_start="99025" e_stop="99123"/>
          <exon e_start="99208" e_stop="99340"/>
          <exon e_start="99439" e_stop="99612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTTTGGATTAATCATGTTGTGTTTTGAAGGTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAGAGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACGGTAAGGCTCAAGAGAGAGTTTGAGCTCACTGAGATATCTGATTACAAGTGAAATAAACTTTTTCTGGGTGAGACTGAGAAATTATGGATATAAGCTTTCTTGAACACCTAGCAGTCTAGCACTATCAGTCTTCTAATAACCCTTTTGTGCAATTTCATATGCAAAGTTCTGCTAAATATATCTCCATCTACTTTTTGTGATTAACAAGGTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAGGTGAACCTGCCAGCCATTCTGGAGTACCTGTAGTTCTTATCAGATATTCTATCATTTTAACTGTTATTGCTGCTGGATAATCAGAGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAGGTGCATTTTACGGAAATTAAATTGATGCATCACCAGCTTTTCACTCAATACACACTAAAACTTTATGTTTACTGTAATGTAGTTTTTGTTACATGTAGGTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAAACATCAGCGAAAGCCTTATCCACCAGGAAGATTGAATTTGGCAG</genome_strand>
        <mrna_strand>TGCCTTTTGGATTAATCATGTCGTGTTTTGAAGTTTTGACAAGATGGCAAGGGGTGGAGAACAATTAGGGAAGAGAACCATTGGTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACG................................................................................................................................................................................................................GTTGAGGTGTTATGGAGCCTAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAATTGAACACTTTCAGACAG....................................................................................AAATGGAAGGATGAAGAGGAAAGACTAGAAGTGCTCGCAGAGAAGCACAAACGTGGAGATGCAGCAAGATTTATTAGAGCAACAAGAATATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAATAAAG..................................................................................................GTAACAAGCGCCAGAAACTTGATCATCATAGGAGGCCAAGCGAAATGATGCGGACAAGCAATGTAAAGAAACATTATTATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAACCACCAGCGAAAGCCTCATCCACCAGGAAGATTGAATTTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274047" ref_strand="+" ref_description="SGN-E274047 [cLEN-8-J5]">
      <seq>caaggagagctatggcgctgccaaacagcagcatacctttacggttgaggtgttatggagccaaggggttaaacaattacctccactttttccattgcttgtgaagggacgaaacctttataagatgaagactttcagacagagatggagggatgaagaggaaagactagaagtgctcggagagaagcacaaacgtggagatgcagcgagatttattagagcaacaagaaaatcaaaatcaacaaagccgacaaaagcatcctctaaaaacaaaggtaacaagcgccagaaacttgatcatcatatgaggccaagcaaaatgatgcagacaagcaatgtaaagaaacataatcattctattgatgaacgtgggaaagcaatggcaggaagtaaaagaacgaaaaaacatcagcgaaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="98474" stop="99884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98774" g_stop="98816" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98817" i_stop="99024" i_length="208">
            <donor d_prob="0.479" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99025" g_stop="99123" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="142" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99124" i_stop="99207" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99208" g_stop="99340" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="275" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99341" i_stop="99438" i_length="98">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99439" g_stop="99584" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="421" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E274047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98774" e_stop="98816"/>
          <exon e_start="99025" e_stop="99123"/>
          <exon e_start="99208" e_stop="99340"/>
          <exon e_start="99439" e_stop="99584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACGGTAAGGCTCAAGAGAGAGTTTGAGCTCACTGAGATATCTGATTACAAGTGAAATAAACTTTTTCTGGGTGAGACTGAGAAATTATGGATATAAGCTTTCTTGAACACCTAGCAGTCTAGCACTATCAGTCTTCTAATAACCCTTTTGTGCAATTTCATATGCAAAGTTCTGCTAAATATATCTCCATCTACTTTTTGTGATTAACAAGGTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAGGTGAACCTGCCAGCCATTCTGGAGTACCTGTAGTTCTTATCAGATATTCTATCATTTTAACTGTTATTGCTGCTGGATAATCAGAGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAGGTGCATTTTACGGAAATTAAATTGATGCATCACCAGCTTTTCACTCAATACACACTAAAACTTTATGTTTACTGTAATGTAGTTTTTGTTACATGTAGGTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAAACATCAGCGAAAGCCT</genome_strand>
        <mrna_strand>CAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACG................................................................................................................................................................................................................GTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAG....................................................................................AGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAG..................................................................................................GTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAAACATCAGCGAAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277316" ref_strand="+" ref_description="SGN-E277316 [cLEL-3-N6]">
      <seq>ttttttttttttttttttaaaaataaaaagtatttttttaagacgaaacactttcgtaaatttctgtacatatgtttgaaattcgacatttactacaaggcaatgttccaaatgtcagtttaagacaccttgcactattttgtttatgtaaaccccttgctgctgctatgtgcagagcacaagtttgtgtgtaagagaaacaaaaagctaagagttccatctacgttcatagtttacaaatgggattgagtcagatgatctatcaatacccaacatgccagggggatgcggataattgttagactgagatacatacctagcgtatgaagaatttggataacttccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="129581" stop="99546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100194" g_stop="99846" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E277316" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100194" e_stop="99846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACTTTAAAAAAATAAAAATAAAAAAATATCAATTTAAGACGAAACACTTCTGCAAATTTCTGTACATATGTTTGAAATTCGACATTTACTACAAGGCAATGTTCCAAATGTCAGTTTAAGACACCTTGCACTATTTTGTTTATGTAAACCCCTTGCTGCTGCTATGTGCAGAGCACAAGTTTGTGTGTAAGAGAAACAAAAAGCTAAGAGTTCCATCTACGTTCATAGTTTACAAATGGGATTGAGTCAGATGATCTATCAATACCCAACATGCCAGGGGGATGCGGATAATTGTTAGACTGAGATACATACCTAGCGTATGAAGAATTTGGATAACTTCCATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTAAAAAT-AAAAAGTATTTTTTTAAGACGAAACACTTTCGTAAATTTCTGTACATATGTTTGAAATTCGACATTTACTACAAGGCAATGTTCCAAATGTCAGTTTAAGACACCTTGCACTATTTTGTTTATGTAAACCCCTTGCTGCTGCTATGTGCAGAGCACAAGTTTGTGTGTAAGAGAAACAAAAAGCTAAGAGTTCCATCTACGTTCATAGTTTACAAATGGGATTGAGTCAGATGATCTATCAATACCCAACATGCCAGGGGGATGCGGATAATTGTTAGACTGAGATACATACCTAGCGTATGAAGAATTTGGATAACTTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218659" ref_strand="+" ref_description="SGN-E218659 [cLEL-18-N16](-)">
      <seq>cccatttgtaaactatgaacgtagatggaactcttagctttttgtttctcttacacacaaacttgtgctctgcacatagcagcagcaaggggtttacataaacaaaatagtgcaaggtgtcttaaactgacatttggaacattgccttgtagtaaatgtcgaatttcaaacatatgtacagaaatttgcagaagtgtttcgtcttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="99650" stop="100457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99950" g_stop="100156" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="208" polyA_stop="221"/>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E218659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99950" e_stop="100156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTGTAAACTATGAACGTAGATGGAACTCTTAGCTTTTTGTTTCTCTTACACACAAACTTGTGCTCTGCACATAGCAGCAGCAAGGGGTTTACATAAACAAAATAGTGCAAGGTGTCTTAAACTGACATTTGGAACATTGCCTTGTAGTAAATGTCGAATTTCAAACATATGTACAGAAATTTGCAGAAGTGTTTCGTCTTAA</genome_strand>
        <mrna_strand>CCCATTTGTAAACTATGAACGTAGATGGAACTCTTAGCTTTTTGTTTCTCTTACACACAAACTTGTGCTCTGCACATAGCAGCAGCAAGGGGTTTACATAAACAAAATAGTGCAAGGTGTCTTAAACTGACATTTGGAACATTGCCTTGTAGTAAATGTCGAATTTCAAACATATGTACAGAAATTTGCAGAAGTGTTTCGTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250289" ref_strand="+" ref_description="SGN-E250289 [cLEG-6-C14]">
      <seq>actggcagttgactttgctgaagaaaagtctcttccaatggattgtcaatttctcctcaacaagtgctttgtctaatacattacaccaagtttgagaaaaacaagatccagcggatgaaaatacaacaaaaaaagaggcagcgctggattgtcaatttctcctcaacaatagctctctctaatacattagagcaagttgaagaaaatatacatcaaggacttgggcattggtcttgacatgaatgagggcaaaacagtgcaacacaggttcaaggtgtttgggtgttggcaaggcaacttgaacatgcaaggcttaagtgcgggctagagtcatcggcaaggcagcgtgttggcttgacaaggcaaaacttggttggncagacttgacgatggtaagaacaaaggcattcacgtaaattgctgaaataaaaccaagtgttggaggacaactaaaatattctaagtgttggaagctggctgaaataatctaagtgttggaatgtagcctgaaatattctaagtgttaaaatattaatatttcgtgtggataaggatgtaatttaaattagagtctatctgttagaaatatatctgttggaaacttagtttgaatcttgtgatgacaagtgtcggacatgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="110283" stop="120189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110583" g_stop="110693" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110694" i_stop="119060" i_length="8367">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119061" g_stop="119166" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="217" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119167" i_stop="119468" i_length="302">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119469" g_stop="119889" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="642" r_length="425" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E250289" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110583" e_stop="110693"/>
          <exon e_start="119061" e_stop="119166"/>
          <exon e_start="119469" e_stop="119889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGCAGTTGACTTTGCTGAAGAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCAACAAGTGCTTTGTCTAATACATTACACCAAGTTTGAGAAAAACAAGATCCAGGTAATTAAGTTATATTTTTGCATATACTATATGATATTTATTATCTTCTTATACGAGCTAGCCAATTAGTAGAATGTGTACATACTAGCTTCCTTTATGATTTTGAGCAAATATTATGTGTTTGATATTCATAAAATTCTTGTTTTTTTTGTATATATTTAAATAAGAAAGAATGAGAACAAGAACATACATTTTTTGTATCCCTACAACACAAATGAGACACCCAAAAACTTGACAAAATGAGTTAACATAAATTAACTAGCCCCTACAGACTAAAATTAGGGCAACCTAGTGACCTAATCATCCTGCATTGACTAGGTCCCGGAAGGACCGACACTCTTTTGGTGTGTGAGGTGTGCAGCCTACCTTGATGCAAAGCATCAGGGGCTGATTCCAAAACGGCTTGAACCCGTAACTTATTGGTTACACGGAGACAATTTTATTGTTGCTCTCCAGGTGTATCTAAGAAATCAGTAGAAACTATGTACTAAAAATCGAAGCTACTGCAACATATGACAAAATCCATCAAAGTATTATCTCTATGCTTGGTTGGCTTCACACGACGTGTGATATTTTTTATTATCCAGCCCTGCGAAAGAACAATAATTAGAACTTGAATCCAAAATTTTAGAAAGAAAGGGGAAAGACTTTTGTTTGAACTTAGTGTAATGAGGTAGAGCGTGGATAAATTTGTGTAGTACCTTAAGTTCCACTAGTGGATCTTGGAGAATCCAAGGAAGCAAGGGTGGAATTTGGTGTACTTGTTAGTCCACTGTCACAGCAGTTGATTCTAGCAAACCAATTCTGTAACCAGTTTCTGGCTGGATGAAGAACTCCACAGTCACAATATTTGCTTATCTTTATGTATTGTGATGCCCATTTTACTATCACATCAATCAACCATGTGACAACACCAATTAACATGGATTCAATCCATTGCTTCCAATTCAGTCGAGCCGTGTTGCTAAAGACAACCTCTACTTCAATGAATCCGAACTGCAACACAAGATAGAGCCCAGACAATGCCCAAAACAAGTAATTTTGACCAAGACCTTTGAAAAAATTCTTCTGCTCTAAATCCCTTGCACTGAATATGTTAAAAAGCAGGCACAGAGCGAACCCGTTAAAGACTATAGATCTGTTAATTTTTGAAGTGACGCCGAGTATTGCACTTCCTCTGTGTTGAAGGAATACAAAAATGCCAGTCTGATAGGAAGCTTGAAGAAGTATGTTTCTCCACATAGCGTTGGTAATTGGTGGTTTTCTTGATATGATAAAATGCTCATCCCTTAGTTGTCTTGTGGCCTGTTGAGTAATTAGCAAAGCTGGCCCTCCAATAAATTTTACAAGAAGGTTAACCCATACCAACTGAACGACTGTTAATGGACCATCTCCGTCCAATATAACCAGTATGAAGTTTATTAATAAGCTACTGATTGCCAAGATTACCTCAACTTGGATGAATTGCCTCATATTCTCACAAACAATTCTTCCTCCTTTGATGCTGTTAATCACATAAGTTATAGTTTCAGGCCAGTTAGTCACCACAGGCAGGCTAAAATGAGCTGCTTCAAGAACCACATTACTTTCAGATGCTTGTTCTCCTACCACAGCCACCACTTCTCCTCTTTTCTTCAACTGCTCTATTAAAAGAAGCATGCATGTGGGAGAGGAATTTCCCATAATGCAAGTTTTATCAACGATTTCCTTTGTAGCATCTTCGCCCCTAACTACTAGAGCTTCACGTGAGTTGAGCAATCCTGTTTCATCAACAATGGTACAAAGCACTTCAACATCTTCTTCCGAGGCAAATATCATCTTCACTCCGCCTTCTTTCAGATTATCAATTCCTTGCCTCATGTTGTCTAGATTGAAAGCATCTTCTAAGACAAACCTACCAATGAATGTTAGTCCATTTTCATCAAGTTCTGCAACGCCATGAGTGTGTTTGAAGGCAAATGCAACTACCTTCATGTTGTTGTTGTTAGCTTGAGCAATGCCACTCTTTGTTCCGTCATCCAAATCATGCAATTCACCGGTCGTGTCATAGTAACTTGAACACATTGACAATATTGAATCAGTAGGGCCCTTGAAATATGAATAGTACTCTTTCCCATTGTCTCCACTTTTCTCCATGACAACTCTACAAGGTCCTTCAAAAGGATTCATCTCATCATCGTTGTCCTTCACTTTGGTGAACTGCTGATTGGAAGAGTCTCTCTGCATACCGCAGTTCTTCTCTACCCAACAGAGTATTGCTTGTTCTACTCTGTGGTAGGCTGTTTGAGAAGTCAGAGGGGACACACCAATTCCAGCAGAGAGAACATTGTAGACATGCGGGGGAATCTTGGCAACATCTTTTTTGTCAAGAAGAAACTGAGTAACTTTCAGTTTTTGCTCTTTCAACCAGCAAACTTTTTCTATACAGATGGTGTTGACTGGTTCCATCTTAACATCAAAAATTGGATACCAGTATGCCCTTGCTATTGAAATAAGAAATGGAACTCCTTCAGTTATCCCCACCAGTGAGATACCAAGAGAAGTTATCATAACTCTCACTGTTCCCTTTGATTCTGTCAAAACCTTCTTCACGGCATTCATTATCCGTGCAATTTCAGTTGGTTCTTCCTTGATTTCCAATCTATATCCGTTATCATCATCTTTATGCCCCAATTTAAAGCGAATGAACAGCACCACACTGATCAAAATGCCAATCGACAGCCCACTAATATGTATGTAATTGTTCAACTTGTCAAAGTCGGCACAGAAACTGGAGTCCGTTTCAGCAATAAACGGCTGGTCCTTCCTTGCTCTGTTCTCATTTTGCTTCTTCCAAATGTGTCTTTTGTACCAATTACGTGCTAGCTTAAACAAAACAATCACAAATATAATCACAACCAGAAGTGCTCCTTCAAACCAACCATTCTGCACACCTTCTTCTTTGATTCCAAAGACAAACGACAATATTGCTGCAACTGCAAGGAGCAAAATAGTTGGTTCCTTGCATACTAACTTTCGGATCATGAATTTGCCATATCCGGCGAAGATCAGCATGTGATGAGACAAGTCGCACCTAGAAATGTCTCCAACTTGAATTCCCTTGTCAACAGTACTCCCCTTCACTCCTTCAAAATTGTGAAGTGAATCCAACTTCACAATCTCTTCACTAATTTGTAAGCATTGCTGATGAGTACTCTGAAGCTCAATCTCGCAGTGATCATGGTTTGATTGTCCAACATTAACATGAGCTGAAGCTTCCACAATTTCAACAATCTGGATTTCATCTCCACCACCTTCAGAGTTCTGAGTAGACACAAAGCATATATAATCCCTCTAATTAATTTTATCAACATAACTAAAACTGTATACATAGATATTCTATATTGGTAGAATTTATTAGGAAATATAATGCATGCATCTAGGTGTATGTATTAGTGGTACCTTGTTTGATACACTTTTTCTTACTATGTATAACTAATGTTATACACTCTATTTTATATTACATATACCAAGTAATTTTAGATATTAATTATATATAGCATTTAAATACTTGCATTAGATTAAATAATTACAAAATTAAACTACCTTCAAAGCTTTTTAAAACATTTCCTAACTTCTTCTCTTCTTTTCATTTTCTTTCTTGTCATGTGTTTTATTTTTGTTGTTGCTTATTTTTCAATGTCTTTTAATTTGTTAGTGTCTTGATAGATTTTATGGGAGTTTTTGGTTAAAATTATATATGTCAACAATGATTTAAATCTAATGTACATCCTTATATTATCTAAGTGAGCAAAAAATATTCTTATACTATCTAAAAAATAACAAGAATCATTCTTCAGCCTATTTTTGTCAAAACATTGTTGAACCAATAAAAAAAATTTTGTTTAACTTGATCACGTCTGTGTCACGACGAAAAGATCAAAGTTATGTAATAAAAATAAGGATATGGATAGAAAATGAATCTTGAATTTAATTAAATTTCGTGTGTTGTTAGTTTATAGAGTATGTAATTTTGCATCATCTAGTAAACTGACTTGCACCAATACATAAGTTTTGAAATATTTATACAGTACGTCCGAAGGTTAGAAAGATTATGTAAAAAAGTCATTTCAAATATATTACTTCCAACTATTTAGAGATTTTCTTTAGTAAAATATTGAGGGGTGTATACTATATATACAATGTTCACATTTTATACAATTTACAAAAATGCTGGAAATTTAGTGAAATTACATAGGTATTTAGTTATTAAAAACAAAAAATAATTATTTTATTTGAAATTTTTGAAATTGGAGTAGTATTTTTTTCCCAAAGAATATTTAGAATTTGAATATATTTTGTCTGAATATAATTTAACCCTCAATTTCAAAAAATAAAAAAAAGTCACCTAACTTGATTAGTTTAACCATGTGTACATATATTCATTCGACTTGACACATTTTTTTTGGGGCGTGAGTTCTTAAAAAAATAGATAAAAGGATGAATGTTGCAACTTCTTGAATAGTTCAGGGATTTTTTTGTTCACTTATATAACACAAGTATGTAATTTAAGTTTTAGTCATACTTCAAAGATTATATTAGCCAAAAATTTGATTTTATGGCCTCTTAAGTAGTATCTTTTTTTTAAAAAAAAAATTAATTTTCAACATAATTTAATCAAAAAATTTACTTGTGGTGATAGATTTGACAAAAAAAATTATTTGCCAACTTTTCACAAAATTATTTTGATTCAAAATAGTATAACTATTTAATATTATTTTTAAAAGTAAGAAGAAAAAGAGGAGTTAAATGTTAATGATGTTTTAGCAAAGAACTTTGTTGCAAGTAATTGCAAAAATAAATAAAGTATGAAGAATATTTTTGTAAACACATATTTTTAAATATAAATTATGCAATATTTTGTTATTTCTAGTACATCAAACTAAACAACGTATAAGAACAGTGTTTGCATAACTAACGCAAGCATTACTAAGATACCTTATTTTGTACTATTCTTATACATTTTACCAAACGACTCTGAGTGAGAAGTGCGAAAATTAGGTCTTAGACTTTACTTACACCCTAAAGCTAATCTCATTAACCGTCAATATGAGACTTGTGTCATTATTTAACTCAAAAGCATAAAGTAAAGTTTAAAATACCATTTTACCCCTATCATAATTAAAAATGTTATAAATATCTAATAAGTTAAATATAAAGTAATTAAAATATTTTCACAACATTTTCACCTCCTAAATTATTTTTAAGCGAAAGAGTTATAAAGTGACCATATTTATCTATAAATTACAAGTGACACTAATTGATTATGATATTATGGATAAAGACTATGCCATAAATGTAACTCTGATAAGTTGTAACCACTTTGAACAAAATCGATCATTTATCGCTAAACATATATTTTTAGCAGCGATTATCACTTTTTTTTATATGTTTTTAAAGTCTTTAGCGACATTGATTCTAATAGCACTTAACAAATGCCGATAAAAAATTTAACACTTATTATTAATGTCAATATTTAATACTACTAAAAATTATTTTTGTTATAGTAAACAATATAAAAACTTAGAGGGACAAATCAATGATATAGTTGGAATAGGAAAAAGATAATGTTCTAAATACTCGATGTTAAGAAATATGTAAGTGTTTGGAAAGCTATCAGCCTAGTAAATTACACAACCTAATAATTATGTGGACTTGTTTGTTTGTCACAGTGTAATTACAAGTTGGGGTGTGCACTGTTTTGGGTTAAATCAAAAAATCAAACCAAATATTTATTTTGTTTAATTTTTTGGTTTAGTTTCAGATTTTAGAAAAATGAAAATCGAAAAATTGAACACACACATATATATAGAGAGAGAATTAAGTTGGAGTTAACCACTTTCTTTTTAGTTATTTTCATTATTATTTAATTTTTTTTTGTTTCGACATCTATAATTAATATACTTTTAAATATTGTATTTTACATTTTTAATATATATATATATATATATATATATATATATATATATATAAAATTCATTTTCAAATTACAAATATAACTTCGTTATGTTCTTAATTATTGCTATAACCGATCGAACCGAAAAAACTCAAACCATAAAAGAGAAAAATCAAACCAAATTTATTTTGGTCGGATTGAGTTACACTTCTTCAAAATCAAAAATTAAAAAATTCAAACCAAATAAAATCGAATGCACAACCCTAATTACAAGTGTAGTGTTTTATTGCACAAGTATAATCATAAGGTTATATTGAATTTTAAAAAATAAAAAATAATTATTTAAAATTTAAATTTATAAATGATATTAAATTGAATAATATTGCCTTTTGAAAATATATTAATTAATAAACCTACGTTCTTTGACTAGTATTATTAAAAATAATTTATCTATATTTTTCAATTTAGTATATTTTAATTATAAAAGTATGTAGTTGTAAAAGAAATGAAATATTGGAGTATTATTTATGCTTACTCCATGTTGAAGACTCAAGGTGGCATGAGTGTTGGATATTGATGAAAGTGATGATATGCTTGCTGCAGCTTCAATGAAGTTGTAAATAGATAGAAAAATGAACACCAACCTCCTCATGATCATCAAACTAAAATTACGTAATTCATCATTCATTGATAGCGGGAAACTCCGCTGAGCTTCAATGTCTTCATGATCCACCTCCATCATCCTACCTAGCTACCTGTATATATATATATATCTCACCTTTGATCAGCACTGTCGTCGTACTTCATGATCACTACTTCTTTTTTAAGATGTACCTAAGACGACCATGATATGATATGATTGAAAAGGATCTAACAAAAGCTACGTAAAAATATAGAGTGTGGCTGAGGGGAGGAAAGGGATTTTCCTAGCAACCTACTATTCCAACAACGCCATAATGAAGTCAATTTTGAATTAATATTCTAAACCTGATCCTTCAAACACCAAGACCACAATATACATAGGCAAAATTTGAACCAGATCAAACCAGTAATATTGTTTTTATTATGTATATACTCAGTGGCGGATCTAGGAATTTAAGGTTGTAGGTGTTTTAAAGTGAAAATATAAAAAAAATATGCGTGTTAACAGTGAGATTCGAACCTTGGTACAACAAGGCTAAAAAAATTTTAAATACCCATTCAGGAGCCATTGGGCCAACTAAATCATTTATTCATTGGGTGCTCTATGTTAATTTTATACAAATACCTATCAATTTCTACATAGATATATATATTTCGTAGCAAAGTTAATGGGTGCTCGAGGTCCGCCTCTGTTAATATACTCTGTGCGTCGACATTACTTTATGATTAACGATTGAATTTTTGCTAATTTTTTGAGAAAGTGAAATGCTTTTTATAAAATTCAATTGTATATTCTAGTCAAGTTTTTGTTTGAGGTTTGTATTATTCAGTTGGTCAAAGAGTTATGGAACTTATTTTCTCATTTCTACTTTCTAAAGCAATTCTGAAACGTAGCTTCCTAGAAAGTTCTCCTAGGCAATTAATTGCTGGTCAAGTGTGTGAGGTTTTTCACTCTCAGCCTTAGCTTTGTGTTACGAAATGTTAATATCATAATCCTTAGGCTGGTTGGTTCGTTTTTATAACGCGGTATTCACAATTTTTCATTTGATCCCACCATCACCACTACACCCCACACACACACACATTTTTGTCCATTTGACCATGAAAAAAGTGAGTATTTAAAAATATTCACCCTCCAACTTTGCTTTAAAAATCAAACTTTTCCTCAATTTTGAACAATCACCAAACTCCCCTGTATTCTATGCATTATTCATTTATATCACATATATATGTAATACCTCTTTATATTATATATAATTTATTTTTTAACCAAAGTATTTATAATTTTTTTCTTTAAGTTCATTAATATTATAAATAGAATAAATTTATCACAAAGTTTGATATTATTTTTATGACCTTTACGTTATTAAATTTGACTACTATTATTTTATGACGTTAGTTAATATTAAGGGTAGAAATAAAAAAAATTGATTAAAAATTCTTTTGATTTCATTAAGTGGAATCGATCAATTATTGTTGAGTTACATGTAATAATAGGGTAGACATGTATCAATTGTTCTTGCCCTGATATACATAAATACATAGTAATTAGTAAATACAAGTATACAACCAACATTAACGTGTGATTGGAGTTGAAAATTGGGGATATATGGGTGAAGTTTGAACAATTCTACCTTCAAATGTAGATGTTAATTGTTTCATTGCATTTTAGAAAAATATATATATATTTTTTTTAATGTCCAAGTATATTTTGTTGTTTCAACCTTCTAGATATTAATTATTTCTGTAAAATATTTTTGTGAGTCATCGTGCATTTTCTACTAATTTAGCGGATGAAAATACAACAAAAAAAGAGGCAGCGCTGGATTGTCAATTTCTCCTCAACAATAGCTCTCTCTAATACATTAGAGCAAGTTGAAGAAAATATACATCAAGGTAATTAAGATATATTTGTGCATATTATATGATATTTAATTTTTTATCTTCTTGCACGAGCCAATTGGTAGAATGTGCATGTACTGACTAGCTTCCTTAATGATTTTGAGCAAAATTCCATGTGTTTGAAATTCATAAAATTCTTGCTTTTTGTATATATTAGTACTATATACTAAGTTTGCATTCTTGAATTCAGTTAAAAGTGGAAGGAAGAACGAGAGAACAAAGAACAGACCTTTTTTTAAATCTCCATCTGTTAGACTCGTAAATTACTTGATCTAATTACGTACAAACATGTCAAGGACTTGGGCATTGGTCTTGACATGAATGAGGGCAAAACAGTGCAACACAGGTTCAAGGTGTTTGGGTGTTGGCAAGGCAACTTGAACATGCAAGGCTTAAGTGCGGGCTAGAGTCATCGGCAAGGCAGCGTGTTGGCTTGACAAGGCAAAAC-T-G-T-GA-AGACTTGACGATGGTAAGAACAAAGGCATTCCACGTAAATTGCTGAAATAAAACCAAGTGTTGGAGGACAACTAAAATATTCTAAGTGTTGGAAGCTGGCTGAAATAATCTAAGTGTTGGAATGTAGCCTGAAATATTCTAAGTGTTAAAATATTAATATTTCGTGTGGATAAGGATGTAATTTAAATTAGAGTCTATCTGTTAGAAATATATCTGTTGGAAACTTAGTTTGAATCTTGTGATGACAAGTGTCGGACATGTGTC</genome_strand>
        <mrna_strand>ACTGGCAGTTGACTTTGCTGAAGAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCAACAAGTGCTTTGTCTAATACATTACACCAAGTTTGAGAAAAACAAGATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297757" ref_strand="+" ref_description="SGN-E297757 [cLEW-15-M19]">
      <seq>gagggaaaagtctcttccaatggattgtcaatttctcctcggcaggtgcctttgtctaatacattacacccaagtttgagaaaaacaagatccagcggatgaaaataccaacaaaaaaagaggcagcgctggattgtcaatttctcctcaaccaatagctctctctaataccattagagcaagttgaagaaaatataccatcaagttaaaagtggaaggaagaaccgagagaacaaagaaccagacctttttttaaatctccatctgttagactcgtaaattaccttgatctaattaccgtaccaaaccatgtcaaggaccttgggcattggtcttgacatgaatgagggcaaaacagtgcaacacaggttcaaggtgtttgggtgttggcaaggcaacttgaacatgccaggcttaagtgcgggctagagtcatcggcaaggcagcgtgttggcttgacaaggcaaaactgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="110305" stop="119927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110602" g_stop="110693" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110694" i_stop="119060" i_length="8367">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119061" g_stop="119166" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="205" r_length="110" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119167" i_stop="119362" i_length="196">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119363" g_stop="119627" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="477" r_length="272" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E297757" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110602" e_stop="110693"/>
          <exon e_start="119061" e_stop="119166"/>
          <exon e_start="119363" e_stop="119627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-AGAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCAACAAGTG-CTTTGTCTAATACATTACA-CCAAGTTTGAGAAAAACAAGATCCAGGTAATTAAGTTATATTTTTGCATATACTATATGATATTTATTATCTTCTTATACGAGCTAGCCAATTAGTAGAATGTGTACATACTAGCTTCCTTTATGATTTTGAGCAAATATTATGTGTTTGATATTCATAAAATTCTTGTTTTTTTTGTATATATTTAAATAAGAAAGAATGAGAACAAGAACATACATTTTTTGTATCCCTACAACACAAATGAGACACCCAAAAACTTGACAAAATGAGTTAACATAAATTAACTAGCCCCTACAGACTAAAATTAGGGCAACCTAGTGACCTAATCATCCTGCATTGACTAGGTCCCGGAAGGACCGACACTCTTTTGGTGTGTGAGGTGTGCAGCCTACCTTGATGCAAAGCATCAGGGGCTGATTCCAAAACGGCTTGAACCCGTAACTTATTGGTTACACGGAGACAATTTTATTGTTGCTCTCCAGGTGTATCTAAGAAATCAGTAGAAACTATGTACTAAAAATCGAAGCTACTGCAACATATGACAAAATCCATCAAAGTATTATCTCTATGCTTGGTTGGCTTCACACGACGTGTGATATTTTTTATTATCCAGCCCTGCGAAAGAACAATAATTAGAACTTGAATCCAAAATTTTAGAAAGAAAGGGGAAAGACTTTTGTTTGAACTTAGTGTAATGAGGTAGAGCGTGGATAAATTTGTGTAGTACCTTAAGTTCCACTAGTGGATCTTGGAGAATCCAAGGAAGCAAGGGTGGAATTTGGTGTACTTGTTAGTCCACTGTCACAGCAGTTGATTCTAGCAAACCAATTCTGTAACCAGTTTCTGGCTGGATGAAGAACTCCACAGTCACAATATTTGCTTATCTTTATGTATTGTGATGCCCATTTTACTATCACATCAATCAACCATGTGACAACACCAATTAACATGGATTCAATCCATTGCTTCCAATTCAGTCGAGCCGTGTTGCTAAAGACAACCTCTACTTCAATGAATCCGAACTGCAACACAAGATAGAGCCCAGACAATGCCCAAAACAAGTAATTTTGACCAAGACCTTTGAAAAAATTCTTCTGCTCTAAATCCCTTGCACTGAATATGTTAAAAAGCAGGCACAGAGCGAACCCGTTAAAGACTATAGATCTGTTAATTTTTGAAGTGACGCCGAGTATTGCACTTCCTCTGTGTTGAAGGAATACAAAAATGCCAGTCTGATAGGAAGCTTGAAGAAGTATGTTTCTCCACATAGCGTTGGTAATTGGTGGTTTTCTTGATATGATAAAATGCTCATCCCTTAGTTGTCTTGTGGCCTGTTGAGTAATTAGCAAAGCTGGCCCTCCAATAAATTTTACAAGAAGGTTAACCCATACCAACTGAACGACTGTTAATGGACCATCTCCGTCCAATATAACCAGTATGAAGTTTATTAATAAGCTACTGATTGCCAAGATTACCTCAACTTGGATGAATTGCCTCATATTCTCACAAACAATTCTTCCTCCTTTGATGCTGTTAATCACATAAGTTATAGTTTCAGGCCAGTTAGTCACCACAGGCAGGCTAAAATGAGCTGCTTCAAGAACCACATTACTTTCAGATGCTTGTTCTCCTACCACAGCCACCACTTCTCCTCTTTTCTTCAACTGCTCTATTAAAAGAAGCATGCATGTGGGAGAGGAATTTCCCATAATGCAAGTTTTATCAACGATTTCCTTTGTAGCATCTTCGCCCCTAACTACTAGAGCTTCACGTGAGTTGAGCAATCCTGTTTCATCAACAATGGTACAAAGCACTTCAACATCTTCTTCCGAGGCAAATATCATCTTCACTCCGCCTTCTTTCAGATTATCAATTCCTTGCCTCATGTTGTCTAGATTGAAAGCATCTTCTAAGACAAACCTACCAATGAATGTTAGTCCATTTTCATCAAGTTCTGCAACGCCATGAGTGTGTTTGAAGGCAAATGCAACTACCTTCATGTTGTTGTTGTTAGCTTGAGCAATGCCACTCTTTGTTCCGTCATCCAAATCATGCAATTCACCGGTCGTGTCATAGTAACTTGAACACATTGACAATATTGAATCAGTAGGGCCCTTGAAATATGAATAGTACTCTTTCCCATTGTCTCCACTTTTCTCCATGACAACTCTACAAGGTCCTTCAAAAGGATTCATCTCATCATCGTTGTCCTTCACTTTGGTGAACTGCTGATTGGAAGAGTCTCTCTGCATACCGCAGTTCTTCTCTACCCAACAGAGTATTGCTTGTTCTACTCTGTGGTAGGCTGTTTGAGAAGTCAGAGGGGACACACCAATTCCAGCAGAGAGAACATTGTAGACATGCGGGGGAATCTTGGCAACATCTTTTTTGTCAAGAAGAAACTGAGTAACTTTCAGTTTTTGCTCTTTCAACCAGCAAACTTTTTCTATACAGATGGTGTTGACTGGTTCCATCTTAACATCAAAAATTGGATACCAGTATGCCCTTGCTATTGAAATAAGAAATGGAACTCCTTCAGTTATCCCCACCAGTGAGATACCAAGAGAAGTTATCATAACTCTCACTGTTCCCTTTGATTCTGTCAAAACCTTCTTCACGGCATTCATTATCCGTGCAATTTCAGTTGGTTCTTCCTTGATTTCCAATCTATATCCGTTATCATCATCTTTATGCCCCAATTTAAAGCGAATGAACAGCACCACACTGATCAAAATGCCAATCGACAGCCCACTAATATGTATGTAATTGTTCAACTTGTCAAAGTCGGCACAGAAACTGGAGTCCGTTTCAGCAATAAACGGCTGGTCCTTCCTTGCTCTGTTCTCATTTTGCTTCTTCCAAATGTGTCTTTTGTACCAATTACGTGCTAGCTTAAACAAAACAATCACAAATATAATCACAACCAGAAGTGCTCCTTCAAACCAACCATTCTGCACACCTTCTTCTTTGATTCCAAAGACAAACGACAATATTGCTGCAACTGCAAGGAGCAAAATAGTTGGTTCCTTGCATACTAACTTTCGGATCATGAATTTGCCATATCCGGCGAAGATCAGCATGTGATGAGACAAGTCGCACCTAGAAATGTCTCCAACTTGAATTCCCTTGTCAACAGTACTCCCCTTCACTCCTTCAAAATTGTGAAGTGAATCCAACTTCACAATCTCTTCACTAATTTGTAAGCATTGCTGATGAGTACTCTGAAGCTCAATCTCGCAGTGATCATGGTTTGATTGTCCAACATTAACATGAGCTGAAGCTTCCACAATTTCAACAATCTGGATTTCATCTCCACCACCTTCAGAGTTCTGAGTAGACACAAAGCATATATAATCCCTCTAATTAATTTTATCAACATAACTAAAACTGTATACATAGATATTCTATATTGGTAGAATTTATTAGGAAATATAATGCATGCATCTAGGTGTATGTATTAGTGGTACCTTGTTTGATACACTTTTTCTTACTATGTATAACTAATGTTATACACTCTATTTTATATTACATATACCAAGTAATTTTAGATATTAATTATATATAGCATTTAAATACTTGCATTAGATTAAATAATTACAAAATTAAACTACCTTCAAAGCTTTTTAAAACATTTCCTAACTTCTTCTCTTCTTTTCATTTTCTTTCTTGTCATGTGTTTTATTTTTGTTGTTGCTTATTTTTCAATGTCTTTTAATTTGTTAGTGTCTTGATAGATTTTATGGGAGTTTTTGGTTAAAATTATATATGTCAACAATGATTTAAATCTAATGTACATCCTTATATTATCTAAGTGAGCAAAAAATATTCTTATACTATCTAAAAAATAACAAGAATCATTCTTCAGCCTATTTTTGTCAAAACATTGTTGAACCAATAAAAAAAATTTTGTTTAACTTGATCACGTCTGTGTCACGACGAAAAGATCAAAGTTATGTAATAAAAATAAGGATATGGATAGAAAATGAATCTTGAATTTAATTAAATTTCGTGTGTTGTTAGTTTATAGAGTATGTAATTTTGCATCATCTAGTAAACTGACTTGCACCAATACATAAGTTTTGAAATATTTATACAGTACGTCCGAAGGTTAGAAAGATTATGTAAAAAAGTCATTTCAAATATATTACTTCCAACTATTTAGAGATTTTCTTTAGTAAAATATTGAGGGGTGTATACTATATATACAATGTTCACATTTTATACAATTTACAAAAATGCTGGAAATTTAGTGAAATTACATAGGTATTTAGTTATTAAAAACAAAAAATAATTATTTTATTTGAAATTTTTGAAATTGGAGTAGTATTTTTTTCCCAAAGAATATTTAGAATTTGAATATATTTTGTCTGAATATAATTTAACCCTCAATTTCAAAAAATAAAAAAAAGTCACCTAACTTGATTAGTTTAACCATGTGTACATATATTCATTCGACTTGACACATTTTTTTTGGGGCGTGAGTTCTTAAAAAAATAGATAAAAGGATGAATGTTGCAACTTCTTGAATAGTTCAGGGATTTTTTTGTTCACTTATATAACACAAGTATGTAATTTAAGTTTTAGTCATACTTCAAAGATTATATTAGCCAAAAATTTGATTTTATGGCCTCTTAAGTAGTATCTTTTTTTTAAAAAAAAAATTAATTTTCAACATAATTTAATCAAAAAATTTACTTGTGGTGATAGATTTGACAAAAAAAATTATTTGCCAACTTTTCACAAAATTATTTTGATTCAAAATAGTATAACTATTTAATATTATTTTTAAAAGTAAGAAGAAAAAGAGGAGTTAAATGTTAATGATGTTTTAGCAAAGAACTTTGTTGCAAGTAATTGCAAAAATAAATAAAGTATGAAGAATATTTTTGTAAACACATATTTTTAAATATAAATTATGCAATATTTTGTTATTTCTAGTACATCAAACTAAACAACGTATAAGAACAGTGTTTGCATAACTAACGCAAGCATTACTAAGATACCTTATTTTGTACTATTCTTATACATTTTACCAAACGACTCTGAGTGAGAAGTGCGAAAATTAGGTCTTAGACTTTACTTACACCCTAAAGCTAATCTCATTAACCGTCAATATGAGACTTGTGTCATTATTTAACTCAAAAGCATAAAGTAAAGTTTAAAATACCATTTTACCCCTATCATAATTAAAAATGTTATAAATATCTAATAAGTTAAATATAAAGTAATTAAAATATTTTCACAACATTTTCACCTCCTAAATTATTTTTAAGCGAAAGAGTTATAAAGTGACCATATTTATCTATAAATTACAAGTGACACTAATTGATTATGATATTATGGATAAAGACTATGCCATAAATGTAACTCTGATAAGTTGTAACCACTTTGAACAAAATCGATCATTTATCGCTAAACATATATTTTTAGCAGCGATTATCACTTTTTTTTATATGTTTTTAAAGTCTTTAGCGACATTGATTCTAATAGCACTTAACAAATGCCGATAAAAAATTTAACACTTATTATTAATGTCAATATTTAATACTACTAAAAATTATTTTTGTTATAGTAAACAATATAAAAACTTAGAGGGACAAATCAATGATATAGTTGGAATAGGAAAAAGATAATGTTCTAAATACTCGATGTTAAGAAATATGTAAGTGTTTGGAAAGCTATCAGCCTAGTAAATTACACAACCTAATAATTATGTGGACTTGTTTGTTTGTCACAGTGTAATTACAAGTTGGGGTGTGCACTGTTTTGGGTTAAATCAAAAAATCAAACCAAATATTTATTTTGTTTAATTTTTTGGTTTAGTTTCAGATTTTAGAAAAATGAAAATCGAAAAATTGAACACACACATATATATAGAGAGAGAATTAAGTTGGAGTTAACCACTTTCTTTTTAGTTATTTTCATTATTATTTAATTTTTTTTTGTTTCGACATCTATAATTAATATACTTTTAAATATTGTATTTTACATTTTTAATATATATATATATATATATATATATATATATATATATATAAAATTCATTTTCAAATTACAAATATAACTTCGTTATGTTCTTAATTATTGCTATAACCGATCGAACCGAAAAAACTCAAACCATAAAAGAGAAAAATCAAACCAAATTTATTTTGGTCGGATTGAGTTACACTTCTTCAAAATCAAAAATTAAAAAATTCAAACCAAATAAAATCGAATGCACAACCCTAATTACAAGTGTAGTGTTTTATTGCACAAGTATAATCATAAGGTTATATTGAATTTTAAAAAATAAAAAATAATTATTTAAAATTTAAATTTATAAATGATATTAAATTGAATAATATTGCCTTTTGAAAATATATTAATTAATAAACCTACGTTCTTTGACTAGTATTATTAAAAATAATTTATCTATATTTTTCAATTTAGTATATTTTAATTATAAAAGTATGTAGTTGTAAAAGAAATGAAATATTGGAGTATTATTTATGCTTACTCCATGTTGAAGACTCAAGGTGGCATGAGTGTTGGATATTGATGAAAGTGATGATATGCTTGCTGCAGCTTCAATGAAGTTGTAAATAGATAGAAAAATGAACACCAACCTCCTCATGATCATCAAACTAAAATTACGTAATTCATCATTCATTGATAGCGGGAAACTCCGCTGAGCTTCAATGTCTTCATGATCCACCTCCATCATCCTACCTAGCTACCTGTATATATATATATATCTCACCTTTGATCAGCACTGTCGTCGTACTTCATGATCACTACTTCTTTTTTAAGATGTACCTAAGACGACCATGATATGATATGATTGAAAAGGATCTAACAAAAGCTACGTAAAAATATAGAGTGTGGCTGAGGGGAGGAAAGGGATTTTCCTAGCAACCTACTATTCCAACAACGCCATAATGAAGTCAATTTTGAATTAATATTCTAAACCTGATCCTTCAAACACCAAGACCACAATATACATAGGCAAAATTTGAACCAGATCAAACCAGTAATATTGTTTTTATTATGTATATACTCAGTGGCGGATCTAGGAATTTAAGGTTGTAGGTGTTTTAAAGTGAAAATATAAAAAAAATATGCGTGTTAACAGTGAGATTCGAACCTTGGTACAACAAGGCTAAAAAAATTTTAAATACCCATTCAGGAGCCATTGGGCCAACTAAATCATTTATTCATTGGGTGCTCTATGTTAATTTTATACAAATACCTATCAATTTCTACATAGATATATATATTTCGTAGCAAAGTTAATGGGTGCTCGAGGTCCGCCTCTGTTAATATACTCTGTGCGTCGACATTACTTTATGATTAACGATTGAATTTTTGCTAATTTTTTGAGAAAGTGAAATGCTTTTTATAAAATTCAATTGTATATTCTAGTCAAGTTTTTGTTTGAGGTTTGTATTATTCAGTTGGTCAAAGAGTTATGGAACTTATTTTCTCATTTCTACTTTCTAAAGCAATTCTGAAACGTAGCTTCCTAGAAAGTTCTCCTAGGCAATTAATTGCTGGTCAAGTGTGTGAGGTTTTTCACTCTCAGCCTTAGCTTTGTGTTACGAAATGTTAATATCATAATCCTTAGGCTGGTTGGTTCGTTTTTATAACGCGGTATTCACAATTTTTCATTTGATCCCACCATCACCACTACACCCCACACACACACACATTTTTGTCCATTTGACCATGAAAAAAGTGAGTATTTAAAAATATTCACCCTCCAACTTTGCTTTAAAAATCAAACTTTTCCTCAATTTTGAACAATCACCAAACTCCCCTGTATTCTATGCATTATTCATTTATATCACATATATATGTAATACCTCTTTATATTATATATAATTTATTTTTTAACCAAAGTATTTATAATTTTTTTCTTTAAGTTCATTAATATTATAAATAGAATAAATTTATCACAAAGTTTGATATTATTTTTATGACCTTTACGTTATTAAATTTGACTACTATTATTTTATGACGTTAGTTAATATTAAGGGTAGAAATAAAAAAAATTGATTAAAAATTCTTTTGATTTCATTAAGTGGAATCGATCAATTATTGTTGAGTTACATGTAATAATAGGGTAGACATGTATCAATTGTTCTTGCCCTGATATACATAAATACATAGTAATTAGTAAATACAAGTATACAACCAACATTAACGTGTGATTGGAGTTGAAAATTGGGGATATATGGGTGAAGTTTGAACAATTCTACCTTCAAATGTAGATGTTAATTGTTTCATTGCATTTTAGAAAAATATATATATATTTTTTTTAATGTCCAAGTATATTTTGTTGTTTCAACCTTCTAGATATTAATTATTTCTGTAAAATATTTTTGTGAGTCATCGTGCATTTTCTACTAATTTAGCGGATGAAAATA-CAACAAAAAAAGAGGCAGCGCTGGATTGTCAATTTCTCCTCAA-CAATAGCTCTCTCTAATA-CATTAGAGCAAGTTGAAGAAAATATA-CATCAAGGTAATTAAGATATATTTGTGCATATTATATGATATTTAATTTTTTATCTTCTTGCACGAGCCAATTGGTAGAATGTGCATGTACTGACTAGCTTCCTTAATGATTTTGAGCAAAATTCCATGTGTTTGAAATTCATAAAATTCTTGCTTTTTGTATATATTAGTACTATATACTAAGTTTGCATTCTTGAATTCAGTTAAAAGTGGAAGGAAGAA-CGAGAGAACAAAGAA-CAGACCTTTTTTTAAATCTCCATCTGTTAGACTCGTAAATTA-CTTGATCTAATTA-CGTA-CAAA-CATGTCAAGGA-CTTGGGCATTGGTCTTGACATGAATGAGGGCAAAACAGTGCAACACAGGTTCAAGGTGTTTGGGTGTTGGCAAGGCAACTTGAACATGCAAGGCTTAAGTGCGGGCTAGAGTCATCGGCAAGGCAGCGTGTTGGCTTGACAAGGCAAAACTGTGAAG</genome_strand>
        <mrna_strand>GAGGGAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCGGCAGGTGCCTTTGTCTAATACATTACACCCAAGTTTGAGAAAAACAAGATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542260" ref_strand="+" ref_description="SGN-E542260 [TUS-63-H15]">
      <seq>gaaaagtctcttccaatggattgtcaatttctcctcaacaagtgctttgtctaatacattacaccaagtttgagaaaaacaagatccagcggatgaaaatacaacaaaaaaagaggcagcgctggattgtcaatttctcctcaacaatagctctctctaatacattagagcaagttgaagaaaatatacatcaagttaaaagtggaaggaagaacgagagaacaaagaacagacctttttttaaatctccatctgttagactcgtaaattacttgatctaattacgtacaaacatgtcaaggacttgggcattggtcttgacatgaatgagggcaaaacagtgcaacacaggttcaaggtgtttgggtgttggcaaggcaacttgaacatgcaaggcttaagtgcgggctagagtcatcggcaaggcagcgtgttggcttgacaaggcaaaactgtgaagacttgacgatggtaagaacaaaggcattccacgtaaattgctgaaataaaaccaagtgttggaggacaactaaaatattctaagtgttggaagctggctgaaataatctaagtgttggaatgtagcctgaaatattctaagtgttaaaatattaatatttcgtgtggataaagatgtaatttaaattagagtctatctgttagaaatatatctgttggaaacttagtttgaatcttgtgatgacnagtgtcggacatgtgtcatttgtaactgccgcatgtaactgccatgtgcagaaattttaatagggtggaaaatttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="110305" stop="120252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110605" g_stop="110693" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110694" i_stop="119060" i_length="8367">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119061" g_stop="119166" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="195" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119167" i_stop="119362" i_length="196">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119363" g_stop="119952" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="784" r_length="589" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E542260" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110605" e_stop="110693"/>
          <exon e_start="119061" e_stop="119166"/>
          <exon e_start="119363" e_stop="119952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCAACAAGTGCTTTGTCTAATACATTACACCAAGTTTGAGAAAAACAAGATCCAGGTAATTAAGTTATATTTTTGCATATACTATATGATATTTATTATCTTCTTATACGAGCTAGCCAATTAGTAGAATGTGTACATACTAGCTTCCTTTATGATTTTGAGCAAATATTATGTGTTTGATATTCATAAAATTCTTGTTTTTTTTGTATATATTTAAATAAGAAAGAATGAGAACAAGAACATACATTTTTTGTATCCCTACAACACAAATGAGACACCCAAAAACTTGACAAAATGAGTTAACATAAATTAACTAGCCCCTACAGACTAAAATTAGGGCAACCTAGTGACCTAATCATCCTGCATTGACTAGGTCCCGGAAGGACCGACACTCTTTTGGTGTGTGAGGTGTGCAGCCTACCTTGATGCAAAGCATCAGGGGCTGATTCCAAAACGGCTTGAACCCGTAACTTATTGGTTACACGGAGACAATTTTATTGTTGCTCTCCAGGTGTATCTAAGAAATCAGTAGAAACTATGTACTAAAAATCGAAGCTACTGCAACATATGACAAAATCCATCAAAGTATTATCTCTATGCTTGGTTGGCTTCACACGACGTGTGATATTTTTTATTATCCAGCCCTGCGAAAGAACAATAATTAGAACTTGAATCCAAAATTTTAGAAAGAAAGGGGAAAGACTTTTGTTTGAACTTAGTGTAATGAGGTAGAGCGTGGATAAATTTGTGTAGTACCTTAAGTTCCACTAGTGGATCTTGGAGAATCCAAGGAAGCAAGGGTGGAATTTGGTGTACTTGTTAGTCCACTGTCACAGCAGTTGATTCTAGCAAACCAATTCTGTAACCAGTTTCTGGCTGGATGAAGAACTCCACAGTCACAATATTTGCTTATCTTTATGTATTGTGATGCCCATTTTACTATCACATCAATCAACCATGTGACAACACCAATTAACATGGATTCAATCCATTGCTTCCAATTCAGTCGAGCCGTGTTGCTAAAGACAACCTCTACTTCAATGAATCCGAACTGCAACACAAGATAGAGCCCAGACAATGCCCAAAACAAGTAATTTTGACCAAGACCTTTGAAAAAATTCTTCTGCTCTAAATCCCTTGCACTGAATATGTTAAAAAGCAGGCACAGAGCGAACCCGTTAAAGACTATAGATCTGTTAATTTTTGAAGTGACGCCGAGTATTGCACTTCCTCTGTGTTGAAGGAATACAAAAATGCCAGTCTGATAGGAAGCTTGAAGAAGTATGTTTCTCCACATAGCGTTGGTAATTGGTGGTTTTCTTGATATGATAAAATGCTCATCCCTTAGTTGTCTTGTGGCCTGTTGAGTAATTAGCAAAGCTGGCCCTCCAATAAATTTTACAAGAAGGTTAACCCATACCAACTGAACGACTGTTAATGGACCATCTCCGTCCAATATAACCAGTATGAAGTTTATTAATAAGCTACTGATTGCCAAGATTACCTCAACTTGGATGAATTGCCTCATATTCTCACAAACAATTCTTCCTCCTTTGATGCTGTTAATCACATAAGTTATAGTTTCAGGCCAGTTAGTCACCACAGGCAGGCTAAAATGAGCTGCTTCAAGAACCACATTACTTTCAGATGCTTGTTCTCCTACCACAGCCACCACTTCTCCTCTTTTCTTCAACTGCTCTATTAAAAGAAGCATGCATGTGGGAGAGGAATTTCCCATAATGCAAGTTTTATCAACGATTTCCTTTGTAGCATCTTCGCCCCTAACTACTAGAGCTTCACGTGAGTTGAGCAATCCTGTTTCATCAACAATGGTACAAAGCACTTCAACATCTTCTTCCGAGGCAAATATCATCTTCACTCCGCCTTCTTTCAGATTATCAATTCCTTGCCTCATGTTGTCTAGATTGAAAGCATCTTCTAAGACAAACCTACCAATGAATGTTAGTCCATTTTCATCAAGTTCTGCAACGCCATGAGTGTGTTTGAAGGCAAATGCAACTACCTTCATGTTGTTGTTGTTAGCTTGAGCAATGCCACTCTTTGTTCCGTCATCCAAATCATGCAATTCACCGGTCGTGTCATAGTAACTTGAACACATTGACAATATTGAATCAGTAGGGCCCTTGAAATATGAATAGTACTCTTTCCCATTGTCTCCACTTTTCTCCATGACAACTCTACAAGGTCCTTCAAAAGGATTCATCTCATCATCGTTGTCCTTCACTTTGGTGAACTGCTGATTGGAAGAGTCTCTCTGCATACCGCAGTTCTTCTCTACCCAACAGAGTATTGCTTGTTCTACTCTGTGGTAGGCTGTTTGAGAAGTCAGAGGGGACACACCAATTCCAGCAGAGAGAACATTGTAGACATGCGGGGGAATCTTGGCAACATCTTTTTTGTCAAGAAGAAACTGAGTAACTTTCAGTTTTTGCTCTTTCAACCAGCAAACTTTTTCTATACAGATGGTGTTGACTGGTTCCATCTTAACATCAAAAATTGGATACCAGTATGCCCTTGCTATTGAAATAAGAAATGGAACTCCTTCAGTTATCCCCACCAGTGAGATACCAAGAGAAGTTATCATAACTCTCACTGTTCCCTTTGATTCTGTCAAAACCTTCTTCACGGCATTCATTATCCGTGCAATTTCAGTTGGTTCTTCCTTGATTTCCAATCTATATCCGTTATCATCATCTTTATGCCCCAATTTAAAGCGAATGAACAGCACCACACTGATCAAAATGCCAATCGACAGCCCACTAATATGTATGTAATTGTTCAACTTGTCAAAGTCGGCACAGAAACTGGAGTCCGTTTCAGCAATAAACGGCTGGTCCTTCCTTGCTCTGTTCTCATTTTGCTTCTTCCAAATGTGTCTTTTGTACCAATTACGTGCTAGCTTAAACAAAACAATCACAAATATAATCACAACCAGAAGTGCTCCTTCAAACCAACCATTCTGCACACCTTCTTCTTTGATTCCAAAGACAAACGACAATATTGCTGCAACTGCAAGGAGCAAAATAGTTGGTTCCTTGCATACTAACTTTCGGATCATGAATTTGCCATATCCGGCGAAGATCAGCATGTGATGAGACAAGTCGCACCTAGAAATGTCTCCAACTTGAATTCCCTTGTCAACAGTACTCCCCTTCACTCCTTCAAAATTGTGAAGTGAATCCAACTTCACAATCTCTTCACTAATTTGTAAGCATTGCTGATGAGTACTCTGAAGCTCAATCTCGCAGTGATCATGGTTTGATTGTCCAACATTAACATGAGCTGAAGCTTCCACAATTTCAACAATCTGGATTTCATCTCCACCACCTTCAGAGTTCTGAGTAGACACAAAGCATATATAATCCCTCTAATTAATTTTATCAACATAACTAAAACTGTATACATAGATATTCTATATTGGTAGAATTTATTAGGAAATATAATGCATGCATCTAGGTGTATGTATTAGTGGTACCTTGTTTGATACACTTTTTCTTACTATGTATAACTAATGTTATACACTCTATTTTATATTACATATACCAAGTAATTTTAGATATTAATTATATATAGCATTTAAATACTTGCATTAGATTAAATAATTACAAAATTAAACTACCTTCAAAGCTTTTTAAAACATTTCCTAACTTCTTCTCTTCTTTTCATTTTCTTTCTTGTCATGTGTTTTATTTTTGTTGTTGCTTATTTTTCAATGTCTTTTAATTTGTTAGTGTCTTGATAGATTTTATGGGAGTTTTTGGTTAAAATTATATATGTCAACAATGATTTAAATCTAATGTACATCCTTATATTATCTAAGTGAGCAAAAAATATTCTTATACTATCTAAAAAATAACAAGAATCATTCTTCAGCCTATTTTTGTCAAAACATTGTTGAACCAATAAAAAAAATTTTGTTTAACTTGATCACGTCTGTGTCACGACGAAAAGATCAAAGTTATGTAATAAAAATAAGGATATGGATAGAAAATGAATCTTGAATTTAATTAAATTTCGTGTGTTGTTAGTTTATAGAGTATGTAATTTTGCATCATCTAGTAAACTGACTTGCACCAATACATAAGTTTTGAAATATTTATACAGTACGTCCGAAGGTTAGAAAGATTATGTAAAAAAGTCATTTCAAATATATTACTTCCAACTATTTAGAGATTTTCTTTAGTAAAATATTGAGGGGTGTATACTATATATACAATGTTCACATTTTATACAATTTACAAAAATGCTGGAAATTTAGTGAAATTACATAGGTATTTAGTTATTAAAAACAAAAAATAATTATTTTATTTGAAATTTTTGAAATTGGAGTAGTATTTTTTTCCCAAAGAATATTTAGAATTTGAATATATTTTGTCTGAATATAATTTAACCCTCAATTTCAAAAAATAAAAAAAAGTCACCTAACTTGATTAGTTTAACCATGTGTACATATATTCATTCGACTTGACACATTTTTTTTGGGGCGTGAGTTCTTAAAAAAATAGATAAAAGGATGAATGTTGCAACTTCTTGAATAGTTCAGGGATTTTTTTGTTCACTTATATAACACAAGTATGTAATTTAAGTTTTAGTCATACTTCAAAGATTATATTAGCCAAAAATTTGATTTTATGGCCTCTTAAGTAGTATCTTTTTTTTAAAAAAAAAATTAATTTTCAACATAATTTAATCAAAAAATTTACTTGTGGTGATAGATTTGACAAAAAAAATTATTTGCCAACTTTTCACAAAATTATTTTGATTCAAAATAGTATAACTATTTAATATTATTTTTAAAAGTAAGAAGAAAAAGAGGAGTTAAATGTTAATGATGTTTTAGCAAAGAACTTTGTTGCAAGTAATTGCAAAAATAAATAAAGTATGAAGAATATTTTTGTAAACACATATTTTTAAATATAAATTATGCAATATTTTGTTATTTCTAGTACATCAAACTAAACAACGTATAAGAACAGTGTTTGCATAACTAACGCAAGCATTACTAAGATACCTTATTTTGTACTATTCTTATACATTTTACCAAACGACTCTGAGTGAGAAGTGCGAAAATTAGGTCTTAGACTTTACTTACACCCTAAAGCTAATCTCATTAACCGTCAATATGAGACTTGTGTCATTATTTAACTCAAAAGCATAAAGTAAAGTTTAAAATACCATTTTACCCCTATCATAATTAAAAATGTTATAAATATCTAATAAGTTAAATATAAAGTAATTAAAATATTTTCACAACATTTTCACCTCCTAAATTATTTTTAAGCGAAAGAGTTATAAAGTGACCATATTTATCTATAAATTACAAGTGACACTAATTGATTATGATATTATGGATAAAGACTATGCCATAAATGTAACTCTGATAAGTTGTAACCACTTTGAACAAAATCGATCATTTATCGCTAAACATATATTTTTAGCAGCGATTATCACTTTTTTTTATATGTTTTTAAAGTCTTTAGCGACATTGATTCTAATAGCACTTAACAAATGCCGATAAAAAATTTAACACTTATTATTAATGTCAATATTTAATACTACTAAAAATTATTTTTGTTATAGTAAACAATATAAAAACTTAGAGGGACAAATCAATGATATAGTTGGAATAGGAAAAAGATAATGTTCTAAATACTCGATGTTAAGAAATATGTAAGTGTTTGGAAAGCTATCAGCCTAGTAAATTACACAACCTAATAATTATGTGGACTTGTTTGTTTGTCACAGTGTAATTACAAGTTGGGGTGTGCACTGTTTTGGGTTAAATCAAAAAATCAAACCAAATATTTATTTTGTTTAATTTTTTGGTTTAGTTTCAGATTTTAGAAAAATGAAAATCGAAAAATTGAACACACACATATATATAGAGAGAGAATTAAGTTGGAGTTAACCACTTTCTTTTTAGTTATTTTCATTATTATTTAATTTTTTTTTGTTTCGACATCTATAATTAATATACTTTTAAATATTGTATTTTACATTTTTAATATATATATATATATATATATATATATATATATATATATAAAATTCATTTTCAAATTACAAATATAACTTCGTTATGTTCTTAATTATTGCTATAACCGATCGAACCGAAAAAACTCAAACCATAAAAGAGAAAAATCAAACCAAATTTATTTTGGTCGGATTGAGTTACACTTCTTCAAAATCAAAAATTAAAAAATTCAAACCAAATAAAATCGAATGCACAACCCTAATTACAAGTGTAGTGTTTTATTGCACAAGTATAATCATAAGGTTATATTGAATTTTAAAAAATAAAAAATAATTATTTAAAATTTAAATTTATAAATGATATTAAATTGAATAATATTGCCTTTTGAAAATATATTAATTAATAAACCTACGTTCTTTGACTAGTATTATTAAAAATAATTTATCTATATTTTTCAATTTAGTATATTTTAATTATAAAAGTATGTAGTTGTAAAAGAAATGAAATATTGGAGTATTATTTATGCTTACTCCATGTTGAAGACTCAAGGTGGCATGAGTGTTGGATATTGATGAAAGTGATGATATGCTTGCTGCAGCTTCAATGAAGTTGTAAATAGATAGAAAAATGAACACCAACCTCCTCATGATCATCAAACTAAAATTACGTAATTCATCATTCATTGATAGCGGGAAACTCCGCTGAGCTTCAATGTCTTCATGATCCACCTCCATCATCCTACCTAGCTACCTGTATATATATATATATCTCACCTTTGATCAGCACTGTCGTCGTACTTCATGATCACTACTTCTTTTTTAAGATGTACCTAAGACGACCATGATATGATATGATTGAAAAGGATCTAACAAAAGCTACGTAAAAATATAGAGTGTGGCTGAGGGGAGGAAAGGGATTTTCCTAGCAACCTACTATTCCAACAACGCCATAATGAAGTCAATTTTGAATTAATATTCTAAACCTGATCCTTCAAACACCAAGACCACAATATACATAGGCAAAATTTGAACCAGATCAAACCAGTAATATTGTTTTTATTATGTATATACTCAGTGGCGGATCTAGGAATTTAAGGTTGTAGGTGTTTTAAAGTGAAAATATAAAAAAAATATGCGTGTTAACAGTGAGATTCGAACCTTGGTACAACAAGGCTAAAAAAATTTTAAATACCCATTCAGGAGCCATTGGGCCAACTAAATCATTTATTCATTGGGTGCTCTATGTTAATTTTATACAAATACCTATCAATTTCTACATAGATATATATATTTCGTAGCAAAGTTAATGGGTGCTCGAGGTCCGCCTCTGTTAATATACTCTGTGCGTCGACATTACTTTATGATTAACGATTGAATTTTTGCTAATTTTTTGAGAAAGTGAAATGCTTTTTATAAAATTCAATTGTATATTCTAGTCAAGTTTTTGTTTGAGGTTTGTATTATTCAGTTGGTCAAAGAGTTATGGAACTTATTTTCTCATTTCTACTTTCTAAAGCAATTCTGAAACGTAGCTTCCTAGAAAGTTCTCCTAGGCAATTAATTGCTGGTCAAGTGTGTGAGGTTTTTCACTCTCAGCCTTAGCTTTGTGTTACGAAATGTTAATATCATAATCCTTAGGCTGGTTGGTTCGTTTTTATAACGCGGTATTCACAATTTTTCATTTGATCCCACCATCACCACTACACCCCACACACACACACATTTTTGTCCATTTGACCATGAAAAAAGTGAGTATTTAAAAATATTCACCCTCCAACTTTGCTTTAAAAATCAAACTTTTCCTCAATTTTGAACAATCACCAAACTCCCCTGTATTCTATGCATTATTCATTTATATCACATATATATGTAATACCTCTTTATATTATATATAATTTATTTTTTAACCAAAGTATTTATAATTTTTTTCTTTAAGTTCATTAATATTATAAATAGAATAAATTTATCACAAAGTTTGATATTATTTTTATGACCTTTACGTTATTAAATTTGACTACTATTATTTTATGACGTTAGTTAATATTAAGGGTAGAAATAAAAAAAATTGATTAAAAATTCTTTTGATTTCATTAAGTGGAATCGATCAATTATTGTTGAGTTACATGTAATAATAGGGTAGACATGTATCAATTGTTCTTGCCCTGATATACATAAATACATAGTAATTAGTAAATACAAGTATACAACCAACATTAACGTGTGATTGGAGTTGAAAATTGGGGATATATGGGTGAAGTTTGAACAATTCTACCTTCAAATGTAGATGTTAATTGTTTCATTGCATTTTAGAAAAATATATATATATTTTTTTTAATGTCCAAGTATATTTTGTTGTTTCAACCTTCTAGATATTAATTATTTCTGTAAAATATTTTTGTGAGTCATCGTGCATTTTCTACTAATTTAGCGGATGAAAATACAACAAAAAAAGAGGCAGCGCTGGATTGTCAATTTCTCCTCAACAATAGCTCTCTCTAATACATTAGAGCAAGTTGAAGAAAATATACATCAAGGTAATTAAGATATATTTGTGCATATTATATGATATTTAATTTTTTATCTTCTTGCACGAGCCAATTGGTAGAATGTGCATGTACTGACTAGCTTCCTTAATGATTTTGAGCAAAATTCCATGTGTTTGAAATTCATAAAATTCTTGCTTTTTGTATATATTAGTACTATATACTAAGTTTGCATTCTTGAATTCAGTTAAAAGTGGAAGGAAGAACGAGAGAACAAAGAACAGACCTTTTTTTAAATCTCCATCTGTTAGACTCGTAAATTACTTGATCTAATTACGTACAAACATGTCAAGGACTTGGGCATTGGTCTTGACATGAATGAGGGCAAAACAGTGCAACACAGGTTCAAGGTGTTTGGGTGTTGGCAAGGCAACTTGAACATGCAAGGCTTAAGTGCGGGCTAGAGTCATCGGCAAGGCAGCGTGTTGGCTTGACAAGGCAAAACTGTGAAGACTTGACGATGGTAAGAACAAAGGCATTCCACGTAAATTGCTGAAATAAAACCAAGTGTTGGAGGACAACTAAAATATTCTAAGTGTTGGAAGCTGGCTGAAATAATCTAAGTGTTGGAATGTAGCCTGAAATATTCTAAGTGTTAAAATATTAATATTTCGTGTGGATAAGGATGTAATTTAAATTAGAGTCTATCTGTTAGAAATATATCTGTTGGAAACTTAGTTTGAATCTTGTGATGACAAGTGTCGGACATGTGTCATTTGTAACTGCCGCATGTAACTGCCATGTGCAGAAATTTTAATAAGGGTGGAAATTTTGTTT</genome_strand>
        <mrna_strand>GAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCAACAAGTGCTTTGTCTAATACATTACACCAAGTTTGAGAAAAACAAGATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATGAAAATACAACAAAAAAAGAGGCAGCGCTGGATTGTCAATTTCTCCTCAACAATAGCTCTCTCTAATACATTAGAGCAAGTTGAAGAAAATATACATCAAG....................................................................................................................................................................................................TTAAAAGTGGAAGGAAGAACGAGAGAACAAAGAACAGACCTTTTTTTAAATCTCCATCTGTTAGACTCGTAAATTACTTGATCTAATTACGTACAAACATGTCAAGGACTTGGGCATTGGTCTTGACATGAATGAGGGCAAAACAGTGCAACACAGGTTCAAGGTGTTTGGGTGTTGGCAAGGCAACTTGAACATGCAAGGCTTAAGTGCGGGCTAGAGTCATCGGCAAGGCAGCGTGTTGGCTTGACAAGGCAAAACTGTGAAGACTTGACGATGGTAAGAACAAAGGCATTCCACGTAAATTGCTGAAATAAAACCAAGTGTTGGAGGACAACTAAAATATTCTAAGTGTTGGAAGCTGGCTGAAATAATCTAAGTGTTGGAATGTAGCCTGAAATATTCTAAGTGTTAAAATATTAATATTTCGTGTGGATAAAGATGTAATTTAAATTAGAGTCTATCTGTTAGAAATATATCTGTTGGAAACTTAGTTTGAATCTTGTGATGACNAGTGTCGGACATGTGTCATTTGTAACTGCCGCATGTAACTGCCATGTGCAGAAATTTTAAT-AGGGTGGAAAATTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542354" ref_strand="+" ref_description="SGN-E542354 [TUS-63-J23](-)">
      <seq>cagctttttaacattttcagtgcaagggatttggagcagaagaattttttcaaaggttttggtcaaaattactgtttctgggcattgtctgtgctctatcttgtgttgcagtttggattcattgaagtagaggctgtctttgtctttaccaacacggcacgactgaattggaagcaatgggttgaatccattttaattggagctgctacatggttggttgatgtgatagtaaaatgggcatcacaatacataaagatagacaaatattgtgattgtggaggtctttacctagctagaaactggttacagtattggtttatcaggatcaattgctgttactgtggacaaagaagtacaccaaatccaactcttgcttccttggattattcgagatccactagcggaaaggtaattcaaaaaatttatccatactgcctaattacagttacagttcttccctaaaattttggattcaagttgtagctgttgttcttttgcagggctggataacaaatatcacacgtcgtgttaaaccaacgaagcatagagctaatacttgttgcagtcgcttcaatttttagtagatagtttcctctgttctctatagacggttagatacagttggagcaacactaaagttatctcgatgtgacccatagcttatgggtaaatcagctgacccgtagattatgggttagagcagtactaaaatcagccttgtatcagggtacacacccttgaagggtgtcctttatagttagtttgtgttaattaatttcatcaagtttttcggttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="132447" stop="131052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132147" g_stop="131356" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="797" polyA_stop="830"/>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E542354" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132147" e_stop="131356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTTTAACATTTTCAGTGCAAGGGATTTGGAGCAGAAGAATTTTTTCAAAGGTTTTGGTCAAAATTACTTGTTCTGGGCATTGTCTGTGCTCTATCTTGTGTTGCAGTTTGGATTCATTGAAGTAGAGGCTGTCTTTGTCTTTACCAACACGGCACGACTGAATTGGAAGCAATGGGTTGAATCCATTTTAATTGGAGCTGCTACATGGTTGGTTGATGTGATAGTAAAATGGGCATCACAATACATAAAGATAGACAAATATTGTGATTGTGGAGGTCTTTACCTAGCTAGAAACTGGTTACAGTATTGGTTTATCAGGATCAATTGCTGTTACTGTGGACAAAGAAGTACACCAAATCCAACTCTTGCTTCCTTGGATTATTCGAGATCCACTAGCGGAAAGGTAATTCAAAAAATTTATCCATACTGCCTAATTACAGTTACAGTTCTTCCCTAAAATTTTGGATTCAAGTTGTAGCTGTTGTTCTTTTGCAGGGCTGGATAACAAATATCACACGTCGTGTTAAACCAACGAAGCATAGAGCTAATACTTGTTGCAGTCGCTTCAATTTTTAGTAGATAGTTTCCTCTGTTCTCTATAGACGGTTAGATACAGTTGGAGCAACACTAAAGTTATCTCGATGTGACCCATAGCTTATGGGTAAATCAGCTGACCCGTAGATTATGGGTTAGAGCAGTACTAAAATCAGCCTTGTATCAGGGTACACACCCTTGAAGGGTGTCCTTTATAGTTAGTTTGTGTTAATTAATTTCATCAAGTTTTTCG</genome_strand>
        <mrna_strand>CAGCTTTTTAACATTTTCAGTGCAAGGGATTTGGAGCAGAAGAATTTTTTCAAAGGTTTTGGTCAAAATTACTGTTTCTGGGCATTGTCTGTGCTCTATCTTGTGTTGCAGTTTGGATTCATTGAAGTAGAGGCTGTCTTTGTCTTTACCAACACGGCACGACTGAATTGGAAGCAATGGGTTGAATCCATTTTAATTGGAGCTGCTACATGGTTGGTTGATGTGATAGTAAAATGGGCATCACAATACATAAAGATAGACAAATATTGTGATTGTGGAGGTCTTTACCTAGCTAGAAACTGGTTACAGTATTGGTTTATCAGGATCAATTGCTGTTACTGTGGACAAAGAAGTACACCAAATCCAACTCTTGCTTCCTTGGATTATTCGAGATCCACTAGCGGAAAGGTAATTCAAAAAATTTATCCATACTGCCTAATTACAGTTACAGTTCTTCCCTAAAATTTTGGATTCAAGTTGTAGCTGTTGTTCTTTTGCAGGGCTGGATAACAAATATCACACGTCGTGTTAAACCAACGAAGCATAGAGCTAATACTTGTTGCAGTCGCTTCAATTTTTAGTAGATAGTTTCCTCTGTTCTCTATAGACGGTTAGATACAGTTGGAGCAACACTAAAGTTATCTCGATGTGACCCATAGCTTATGGGTAAATCAGCTGACCCGTAGATTATGGGTTAGAGCAGTACTAAAATCAGCCTTGTATCAGGGTACACACCCTTGAAGGGTGTCCTTTATAGTTAGTTTGTGTTAATTAATTTCATCAAGTTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542356" ref_strand="+" ref_description="SGN-E542356 [TUS-63-J23]">
      <seq>gtgactaactggcctgaaactataacttatgtgattaacagcatcaagggaggaagaattgtttgtgagaatctgaggcagttcatccaagttgaggtaatcttggcaatcagtagcttatcaataaacttcatactggttatagtagacggagatgcccccttaacaatatttcagttggtatgggttaaccttcttgttacatttattggagggccagctttgctaattactctactaagggatgagctttctatcagaccaagaaaaccgccaattaccaaagctatgtggagaaacatactttttcaagcttcttatcagactggcatttttgtattccttcaactcaaaggaagtgcaatactgggcatcactccaaaagttaacagatctatagtctttaacgggttcgctctgtgccagctttttaacattttcagtgcaagggatttggagcagaagaattttttcaaaggttttggtcaaaattacttgttctgggcattgtctgtgctctatcttgtgttgcagtttggattcattgaagtagaggctgtctttgtctttaccaacacggcacgactgaattggaagcaatgggttgaatccattttaattggagctgctacatggttggttgatgtgatagtaaaatgggcatcacaatacataaagatagacaaatattgtgattgtggaggtctttacctagctagaaactggttacagtattggtttatcaggatcaattgctgttactgtggacaaagagtacacaaatcccaactctgcttccttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="132870" stop="131465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132570" g_stop="131765" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E542356" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132570" e_stop="131765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACTAACTGGCCTGAAACTATAACTTATGTGATTAACAGCATCAAGGGAGGAAGAATTGTTTGTGAGAATCTGAGGCAGTTCATCCAAGTTGAGGTAATCTTGGCAATCAGTAGCTTATCAATAAACTTCATACTGGTTATAGTAGACGGAGATGCCCCGTTAACAATATTTCAGTTGGTATGGGTTAACCTTCTTGTTACATTTATTGGAGGGCCAGCTTTGCTAATTACTCTACTAAGGGATGAGCTTTCTATCAGACCAAGAAAACCGCCAATTACCAAAGCTATGTGGAGAAACATACTTTTTCAAGCTTCTTATCAGACTGGCATTTTTGTATTCCTTCAACTCAAAGGAAGTGCAATACTGGGCATCACTCCAAAAGTTAACAGATCTATAGTCTTTAACGGGTTCGCTCTGTGCCAGCTTTTTAACATTTTCAGTGCAAGGGATTTGGAGCAGAAGAATTTTTTCAAAGGTTTTGGTCAAAATTACTTGTTCTGGGCATTGTCTGTGCTCTATCTTGTGTTGCAGTTTGGATTCATTGAAGTAGAGGCTGTCTTTGTCTTTACCAACACGGCACGACTGAATTGGAAGCAATGGGTTGAATCCATTTTAATTGGAGCTGCTACATGGTTGGTTGATGTGATAGTAAAATGGGCATCACAATACATAAAGATAGACAAATATTGTGATTGTGGAGGTCTTTACCTAGCTAGAAACTGGTTACAGTATTGGTTTATCAGGATCAATTGCTGTTACTGTGGACAAAGAAGTACACCAAATCCAACTCTTGCTTCCTTGGA</genome_strand>
        <mrna_strand>GTGACTAACTGGCCTGAAACTATAACTTATGTGATTAACAGCATCAAGGGAGGAAGAATTGTTTGTGAGAATCTGAGGCAGTTCATCCAAGTTGAGGTAATCTTGGCAATCAGTAGCTTATCAATAAACTTCATACTGGTTATAGTAGACGGAGATGCCCCCTTAACAATATTTCAGTTGGTATGGGTTAACCTTCTTGTTACATTTATTGGAGGGCCAGCTTTGCTAATTACTCTACTAAGGGATGAGCTTTCTATCAGACCAAGAAAACCGCCAATTACCAAAGCTATGTGGAGAAACATACTTTTTCAAGCTTCTTATCAGACTGGCATTTTTGTATTCCTTCAACTCAAAGGAAGTGCAATACTGGGCATCACTCCAAAAGTTAACAGATCTATAGTCTTTAACGGGTTCGCTCTGTGCCAGCTTTTTAACATTTTCAGTGCAAGGGATTTGGAGCAGAAGAATTTTTTCAAAGGTTTTGGTCAAAATTACTTGTTCTGGGCATTGTCTGTGCTCTATCTTGTGTTGCAGTTTGGATTCATTGAAGTAGAGGCTGTCTTTGTCTTTACCAACACGGCACGACTGAATTGGAAGCAATGGGTTGAATCCATTTTAATTGGAGCTGCTACATGGTTGGTTGATGTGATAGTAAAATGGGCATCACAATACATAAAGATAGACAAATATTGTGATTGTGGAGGTCTTTACCTAGCTAGAAACTGGTTACAGTATTGGTTTATCAGGATCAATTGCTGTTACTGTGGACAAAG-AGTACACAAATCCCAACTC-TGCTTCCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298287" ref_strand="+" ref_description="SGN-E298287 [cLEW-18-G14]">
      <seq>tgactaactggcctgaaactataacttatgtgattaacaggatcaagggaggaagaattgtttgtgagaatctgaggcagttcatccaagttgaggtaatcttggcaatcagtagcttatcaataaacttcatactggttatagtagacggagatgcccccttaacaatatttcagttggtatgggttaaccttcttgttacatttattggagggccagctttgctaattactctactaagggatgagctttctatcagaccaagaaaaccgccaattaccaaagctatgtggagaaacatactttttcaagcttcttatcagactggcatttttgtattccttcaactcaaaggaagtgcaatactgggcatcactccaaaagttaacagatctatagtctttaacgggttcgctctgtgccagctttttaacattttcagtgcaagggatttggagcagaagaattttttcaaaggttttggtcaaaattacttgttctgggcattgtctgtgctctatcttgtgttgcagtttggattcattgaagtagaggctgtctttgtctttaccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="132869" stop="131694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132569" g_stop="131994" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-E298287" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132569" e_stop="131994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTAACTGGCCTGAAACTATAACTTATGTGATTAACAGCATCAAGGGAGGAAGAATTGTTTGTGAGAATCTGAGGCAGTTCATCCAAGTTGAGGTAATCTTGGCAATCAGTAGCTTATCAATAAACTTCATACTGGTTATAGTAGACGGAGATGCCCCGTTAACAATATTTCAGTTGGTATGGGTTAACCTTCTTGTTACATTTATTGGAGGGCCAGCTTTGCTAATTACTCTACTAAGGGATGAGCTTTCTATCAGACCAAGAAAACCGCCAATTACCAAAGCTATGTGGAGAAACATACTTTTTCAAGCTTCTTATCAGACTGGCATTTTTGTATTCCTTCAACTCAAAGGAAGTGCAATACTGGGCATCACTCCAAAAGTTAACAGATCTATAGTCTTTAACGGGTTCGCTCTGTGCCAGCTTTTTAACATTTTCAGTGCAAGGGATTTGGAGCAGAAGAATTTTTTCAAAGGTTTTGGTCAAAATTACTTGTTCTGGGCATTGTCTGTGCTCTATCTTGTGTTGCAGTTTGGATTCATTGAAGTAGAGGCTGTCTTTGTCTTTACCAACA</genome_strand>
        <mrna_strand>TGACTAACTGGCCTGAAACTATAACTTATGTGATTAACAGGATCAAGGGAGGAAGAATTGTTTGTGAGAATCTGAGGCAGTTCATCCAAGTTGAGGTAATCTTGGCAATCAGTAGCTTATCAATAAACTTCATACTGGTTATAGTAGACGGAGATGCCCCCTTAACAATATTTCAGTTGGTATGGGTTAACCTTCTTGTTACATTTATTGGAGGGCCAGCTTTGCTAATTACTCTACTAAGGGATGAGCTTTCTATCAGACCAAGAAAACCGCCAATTACCAAAGCTATGTGGAGAAACATACTTTTTCAAGCTTCTTATCAGACTGGCATTTTTGTATTCCTTCAACTCAAAGGAAGTGCAATACTGGGCATCACTCCAAAAGTTAACAGATCTATAGTCTTTAACGGGTTCGCTCTGTGCCAGCTTTTTAACATTTTCAGTGCAAGGGATTTGGAGCAGAAGAATTTTTTCAAAGGTTTTGGTCAAAATTACTTGTTCTGGGCATTGTCTGTGCTCTATCTTGTGTTGCAGTTTGGATTCATTGAAGTAGAGGCTGTCTTTGTCTTTACCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352581" ref_strand="+" ref_description="SGN-E352581 [cTOS-9-D4]">
      <seq>tccccttgactccttcaaaattgtgaagtgattccaacttcacattctcttcactaatttgtaggcattgttgatgagtacttagatcatgaggctgaagctcaatctcattgtttgattgtacagtataaacatcagccacagtttcaaccatctggaattcatctccaccaccttccgcgtcctaattagacagagagcatatataattaatatcatcaatatataactttaaactatatgcatatatatatgttttatatatacatactccatgtttaagattgaagctgggaagaggagtataaaaggttgtggtggaggatgatgagactcgtgaaagagatgctattcttgctccagcttcaatgaacttgtaagtagatttgaaaatgagcgccgacttcctcatgatcaaactagatttacccaattctccattcatcaacagcggggaacttcgctgagcttcaatgtctgatccattatcttcatgatccagctccatcatcttcgcctttgatcagnacatttttcttcttcttctgtatttattataaaatactaggaaagatcactatgatctgacacttaaaagattcagatagaataagatatgatggtaaggaactgatttttttgtatacatatttatagggaaaagaaaaggntnggcatgaagctacctagaaagctcctagtctgccaagtttttagttttatataacgcggtattgctgatttttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="133839" stop="135186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134139" g_stop="134885" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134886" i_stop="135001" i_length="116">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135002" g_stop="135007" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="754" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E352581" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134139" e_stop="134885"/>
          <exon e_start="135002" e_stop="135007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTTGACTCCTTCAAAATTGTGAAGTGATTCCAACTTCACATTCTCTTCACTAATTTGTAGGCATTGTTGATGAGTACTTAGATCATGAGGCTGAAGCTCAATCTCATTGTTTGATTGTACAGTATAAACATCAGCCACAGTTTCAACCATCTGGAATTCATCTCCACCACCTTCCGCGTCCTAATTAGACAGAGAGCATATATAATTAATATCATCAATATATAACTTTAAACTATATGCATATATATATGTTTTATATATACATACTCCATGTTTAAGATTGAAGCTGGGAAGAGGAGTATAAAAGGTTGTGGTGGAGGATGATGAGACTCGTGAAAGAGATGCTATTCTTGCTCCAGCTTCAATGAACTTGTAAGTAGATTTGAAAATGAGCGCCGACTTCCTCATGATCAAACTAGATTTACCCAATTCTCCATTCATCAACAGCGGGGAACTTCGCTGAGCTTCAATGTCTGATCCATTATCTTCATGATCCAGCTCCATCATCTTCGCCTTTGATCAGTACATTTTTCTTCTTCTTCTGTATTTATTATAAAATACTAGGAAAGATCACTATGATCTGACACTTAAAAGATTCAGATAGAATAAGATATGATGGTAAGGAACTGATTTTTTTGTATACATATTTATAGGG-AAAGAAAAAGGTTGCCATGAAGCTACCTAGAAAGCTCCTAGTCTGCCAAGTTTTTAGTTTTATATAACGCGGTATTGCTGATTTTTCAATTCACCCCTCCTCCCCCTACAAGATGCTGTGTTTACTATATTTAAAAATGTTTTTCCAAAGACTGATATTTGAAGATGATTTTTATGGATAAATGTATTTGCGGTGCAACCGTAGAAAAAA</genome_strand>
        <mrna_strand>TCCCCTTGACTCCTTCAAAATTGTGAAGTGATTCCAACTTCACATTCTCTTCACTAATTTGTAGGCATTGTTGATGAGTACTTAGATCATGAGGCTGAAGCTCAATCTCATTGTTTGATTGTACAGTATAAACATCAGCCACAGTTTCAACCATCTGGAATTCATCTCCACCACCTTCCGCGTCCTAATTAGACAGAGAGCATATATAATTAATATCATCAATATATAACTTTAAACTATATGCATATATATATGTTTTATATATACATACTCCATGTTTAAGATTGAAGCTGGGAAGAGGAGTATAAAAGGTTGTGGTGGAGGATGATGAGACTCGTGAAAGAGATGCTATTCTTGCTCCAGCTTCAATGAACTTGTAAGTAGATTTGAAAATGAGCGCCGACTTCCTCATGATCAAACTAGATTTACCCAATTCTCCATTCATCAACAGCGGGGAACTTCGCTGAGCTTCAATGTCTGATCCATTATCTTCATGATCCAGCTCCATCATCTTCGCCTTTGATCAGNACATTTTTCTTCTTCTTCTGTATTTATTATAAAATACTAGGAAAGATCACTATGATCTGACACTTAAAAGATTCAGATAGAATAAGATATGATGGTAAGGAACTGATTTTTTTGTATACATATTTATAGGGAAAAGAAAAGGNTNGGCATGAAGCTACCTAGAAAGCTCCTAGTCTGCCAAGTTTTTAGTTTTATATAACGCGGTATTGCTGATTTTTCA....................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334634" ref_strand="+" ref_description="SGN-E334634 [cTOD-23-M22]">
      <seq>tcgcatcagattattcctctcttcaaccccttttctgtagattaattaatatcaaagactaaatttcatcatcaaagcttttcaggatctgatctgaaaattttgatccgttcattttcatgatctggatctgagacctcacttcatcgttgtgttcttagttgaaattggtctaggttagttaaattagggtggatcaatggagtgggcgactctacagcatttagatctccgccatgttggtcggagttcgaagtcgttacagcctcacgccgccgcatttcatcccactcaagcgcttctcgctgttgccgtgggaagccaaataattgaatttgatgcatataccggaagcaagattgcttccatagacattggttcccctgttgttcgaatggcttatagtccaacaagtggacattgtgtaattgctattcttgaggattgtacaatgcgttcgtgtgattttgatgcagagcaaacatgtgttttacattcacctgagaaaaggaccgaacgcatttcttctgatactgaagttcaccttgcattgactcctcttcaacctgttgtattttttggtttccatcgtaggatgagtgttacagttgttggaactgtggaaggtgggaaggcgccaacaaaaataaagactgacctgaagaaacctatcgttaatcttgcttgccatcctcgactaccagttctgtatgtagcttacgcggaagggttgattcgagcttatacatccatacatatgctgtacactacactttacaattggatatactatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="137651" stop="141855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137951" g_stop="138282" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138283" i_stop="138376" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138377" g_stop="138486" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="442" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138487" i_stop="140080" i_length="1594">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140081" g_stop="140246" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="608" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140247" i_stop="141260" i_length="1014">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141261" g_stop="141361" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="709" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141362" i_stop="141464" i_length="103">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141465" g_stop="141537" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="781" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="141538" i_stop="141635" i_length="98">
            <donor d_prob="0.379" d_score="0.98"/>
            <acceptor a_prob="0.686" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="141636" g_stop="141650" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="795" r_length="14" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E334634" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137951" e_stop="138282"/>
          <exon e_start="138377" e_stop="138486"/>
          <exon e_start="140081" e_stop="140246"/>
          <exon e_start="141261" e_stop="141361"/>
          <exon e_start="141465" e_stop="141537"/>
          <exon e_start="141636" e_stop="141650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCATCAGATTATTCCTCTCTTCAACCCCTTTTCTGTAGATTAATTAATATCAAAGACTAAATTTCATCATCAAAGCTTTTCAGGATCTGATCTGAAAATTTTGATCCGTTCATTTTCATGATCTGGATCTGAGACCTCACTTCATCGTTGTGTTCTTAGTTGAAATTGGTCTAGGTTAGTTAAATTAGGGTGGATCAATGGAGTGGGCGACTCTACAGCATTTAGATCTCCGCCATGTTGGTCGGAGTTCGAAGTCGTTACAGCCTCACGCCGCCGCATTTCATCCCACTCAAGCGCTTCTCGCTGTTGCCGTGGGAAGCCAAATAATTGGTAAATCCTTCTCATTTTCAGCTTTGAATTTTAATATGCTTTATGTTCTGTTAATTAACTCTGTGATGATGCTGAGTATATTTTAAATGGGCAGAATTTGATGCATATACCGGAAGCAAGATTGCTTCCATAGACATTGGTTCCCCTGTTGTTCGAATGGCTTATAGTCCAACAAGTGGACATTGTGTAATTGCTATTCTTGAGGTTAGTTCATTTAATATCTTCAAATATTTCAATAGTTTTAGTTAAAACCTGCAAGTGATAACACTTGTTACATTCGAAACTAGTGGAGTTGCGATGAACTTAAGTGTGGTGGCATTGGCTCATGTACTAACTTTGAATCCCCAAAAATATTAACCGAACATTTTCATCTTTCCAAGATGGGAATAGTTTAATGGGTTTTCAGTTCTAACTTGTTGAGGAACCATGAGAAAATGCTTTAAATGGTGATACACTGGCAACCTTTTAGTGCTTAAGTTTTATCAGTAATTTGTTTGCCTAGGAAGGGTCATCATTAAATCCAACAACACAAAAGACTTCCATTTGCACTGAGCAATTGATTACCTTTAGTTTTCTTCGTTTGAGACGAGGGTTGGGTGCTGGCATATAGCATTCGAATGAAAATATCAGATATTATTCATTTAGCTCTTCTTTTCTTGAGCTTACAAAAAAAGCTCTTTTCTTTTTTTTGCATTGGCTCCGATAAGTTGTGAAAGTTTATTCTAAAGGATGTTTGTTATACATAGAAGGATATCTTATTGGCTACAGTTAAAATGGCAACTTGGAGAGGTGACAACTTTCAGACATCCCTGTTTTCCTTGCATCAACCAACCAACAGAAAACTGTATGTACTATAGATTCGTATGGCATAGTAAGAAACTACAAAAGACATGCTACTAGAAGAATCATAAGGAAAAAAATTTATTAGAGAAGGATAAGTGAACTGAGGCGTGATATAACAACTGTCTTCAAATATTTGCAATTTTAAACCAAAAAAAGAAAGAAGAAAAGACTGTCTTCACTCTTCAGCACATTGAATCTCTATGTTATTCAGTGTTTATCTCTATGTTTTTAAAGTATTTTGTGATAAGTTCCTTTTGTTATTTATTATATCCTGGAAGATCATGTCTTTGAATTTCAACTGTGTAATCTTCTGTTATTGTTCTTTAAAATCTTTTTTTGTTTCATTTAATCATATAATATAGTAACAACGGACCAACTTATTACCCTTTTGGCCATTGTCATAAGCAGACAGTGTTCTTCACATCGCTCATGATACTCTAGGTTCCTTCTCTCTTTGCAGTTAGATACCTTGAAATCAAGGATAAAGCTTCTCAGATTATTCGTAATAGACTTTTTTCCCCTTATAAAACAAACTTGCTAGAATTTTTTTCATAAGTACGATCATATGTAATTATTCTTTATTTTCTCTTCTTTTTGTTGTTTGTTTCTTTTGTATAAGACAACAAAGAAGGAAGCAAGGATGCATTTTTATTATCCTCTTTTCCCTTAGGAGTTCATATATTCCCATAAGATTTCTAAAACCCCTAGATAAAGCTAGTATGCATTTTTATTATCCTCTTTTGTCTGTGATATACATTTTTGCTAGTAAAGATTGATTGTTTCAGGGTGAATTTTAATTGTTTCTTACTGTAGAATTTAAAGCTCCAATGATGTCACTCGTTCTTCGTAGCTTAAGTGAGATATTTGAACTCGGATATTGATGTCATCAGTACTCGTTATGCTATTATCTTGCATTTAGGAAAATTGTACTCATTTTGCTTACTGCTTTTTGTAGGATTGTACAATGCGTTCGTGTGATTTTGATGCAGAGCAAACATGTGTTTTACATTCACCTGAGAAAAGGACCGAACGCATTTCTTCTGATACTGAAGTTCACCTTGCATTGACTCCTCTTCAACCTGTTGTATTTTTTGGTTTCCATCGTAGGATGAGTGTTACAGGTTGGAGCTCATGCCTGTACACACATCTATTTCATATTTAAGCAGTTTTTTTTTGTTGCATTGTTTGAGTTAAAAAGTAAATTCTAGCTGATGCTCCTAGTATATGTGTCCTTGGTTAGAAATTTACTCATTATATAAAAGCACCATTGCTATTAGTTTAATTATAGATATTTCACCATCTAAGTGATGGGTTATATGGACATGAGAGATGTAATCCAGCTATTGGGAGTTGCAAATGCAAACCAGAGTTGTGTGGTGTTGTTGTTTCTTGTATAATGTGGTTGTTGGATTGCAGTCTCGGCAATGTTAGTCCTGAGAGCTGCACTAGCTATCCTGTGCTTTTCTGCTTGTTGTTATGCTGATATGTATTTCAAAAGAGTCCTCTGTCATTCATCAATTATGGCCGAGTCTATACTTCTTTCTTGTCAATGCTACCACATTATCTTCATATTTCCTTAGGAGCGTTAATATTTTGTTTTATGTGGTTTAACCGAGTGCCTGCAACATTTACTACTTCTGCCTTCATGTCTCTCTGTTCTGGTTTTCTTGATGATGTATTTTGTCCTTCTGGATTTTGCTCTCATGCTTTGAAGCGTATTATCCCTGAAAGAGCAATACAACAGCCTCCTTTCCTTGCATATCATTCTTTTGTTGTATGCCCATAGCCCATTTAAGAAAAAAAGATCACTGGTAAACTTAGTCAGAACTTGGGAGTTTGTGAAGAGTCTTTTCGTTTGCAGAACTTTGGAGACTAGGGTTTAACCTCGGATTATTTCTTCCCATTTATCTATTGCTCGATGGAAAAAGTTACATGGTACTTGTGGTGGTGGAAGGTCAGGTAGCTGGTGGAATAGTCGAGGTGTGCTCAAGTTGGACAGGCAACACAATGTTAAAAAACAATGTTTTTGTCATTTGCTATGTTTCTACAGTCAAATGCTAGTTCCAGAGCAATTCTTTGTTCTTGAATAGCTATTTTATTGCAAGCGTTTCTGATCCATTTCTCTTCTTGTGAAGTTGTTGGAACTGTGGAAGGTGGGAAGGCGCCAACAAAAATAAAGACTGACCTGAAGAAACCTATCGTTAATCTTGCTTGCCATCCTCGACTACCAGTTCTGGTAACATGTTTAGTGCAATTAAAGCCTCCTATTTCATGATTGACCAACAAAGTTTGTGACTGCCAATTTGATCTGACCTTTTCGTACTCCCTTTTGATTTCAGTATGTAGCTTACGCGGAAGGGTTGATTCGAGCTTATAACATCCATACATATGCTGTACACTACACTTTACAATGTGAGATTTGAACAAGTCTCTTAAGATATTCTCTTTTTTGTTGGATAGTTTGAACTTAGTGGAACTTTCACGAAAGCCTGTTTATTTGCCATATATAGTGGATAATACTATCA</genome_strand>
        <mrna_strand>TCGCATCAGATTATTCCTCTCTTCAACCCCTTTTCTGTAGATTAATTAATATCAAAGACTAAATTTCATCATCAAAGCTTTTCAGGATCTGATCTGAAAATTTTGATCCGTTCATTTTCATGATCTGGATCTGAGACCTCACTTCATCGTTGTGTTCTTAGTTGAAATTGGTCTAGGTTAGTTAAATTAGGGTGGATCAATGGAGTGGGCGACTCTACAGCATTTAGATCTCCGCCATGTTGGTCGGAGTTCGAAGTCGTTACAGCCTCACGCCGCCGCATTTCATCCCACTCAAGCGCTTCTCGCTGTTGCCGTGGGAAGCCAAATAATTG..............................................................................................AATTTGATGCATATACCGGAAGCAAGATTGCTTCCATAGACATTGGTTCCCCTGTTGTTCGAATGGCTTATAGTCCAACAAGTGGACATTGTGTAATTGCTATTCTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTACAATGCGTTCGTGTGATTTTGATGCAGAGCAAACATGTGTTTTACATTCACCTGAGAAAAGGACCGAACGCATTTCTTCTGATACTGAAGTTCACCTTGCATTGACTCCTCTTCAACCTGTTGTATTTTTTGGTTTCCATCGTAGGATGAGTGTTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGAACTGTGGAAGGTGGGAAGGCGCCAACAAAAATAAAGACTGACCTGAAGAAACCTATCGTTAATCTTGCTTGCCATCCTCGACTACCAGTTCTG.......................................................................................................TATGTAGCTTACGCGGAAGGGTTGATTCGAGCTTAT-ACATCCATACATATGCTGTACACTACACTTTACAAT..................................................................................................TGGAT-ATACTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299948" ref_strand="+" ref_description="SGN-E299948 [cLEW-11-K7]">
      <seq>tgccgcaancgaatccatggacatcccgagaattctatctcagcaaggaggacaaccagcttatccacttcctcgaatcagggctttagaagttcacccaaaattaaatctatctgcattgctttttatgaatttgactggtgctgacaatagaaaaaatagagctgcttttactagggatggaaggaaacaattatttgcagttctgcaaggagcaaggggatcttcagcctctgtcttgaaggaaaagctctcagcccttggttcatccggaatattagctgatcatcaacttaaagcgcagctgcaagagcattatttgaaaggacaaagtcagctcacaatttcggatatagcgagaaaggcttttctttatagccattttatggaaggtcatgcaaaaactgttccaatttcccggttacctctcatcacaattctggataccaaacattatttgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="143258" stop="149404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143558" g_stop="143687" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143688" i_stop="143760" i_length="73">
            <donor d_prob="0.043" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143761" g_stop="143860" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="230" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143861" i_stop="145884" i_length="2024">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145885" g_stop="145981" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="327" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145982" i_stop="147070" i_length="1089">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="147071" g_stop="147122" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="379" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="147123" i_stop="149090" i_length="1968">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="149091" g_stop="149175" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="464" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-E299948" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143558" e_stop="143687"/>
          <exon e_start="143761" e_stop="143860"/>
          <exon e_start="145885" e_stop="145981"/>
          <exon e_start="147071" e_stop="147122"/>
          <exon e_start="149091" e_stop="149175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCAATTGAATCCATTGACATCCCGAGAATTCTATCTCAGCAAGGAGGAGAAGCAGTTTATCCACTTCCTCGAATCAGGGCTTTAGAAGTTCACCCAAAATTAAATCTATCTGCATTGCTTTTTATGGTGAGCATTTCGATTTATGTCACATACCTGCGACTTGTGTTGACACTCAGGACATTTCTGTGTTTGTTTACAGAATTTGACTGGTGCTGACAATAGAAAAAATAGAGCTGCTTTTACTAGGGATGGAAGGAAACAATTATTTGCAGTTTTGCAAGGTGCAAGGGGATCTTCAGGTATTTCTAAACTAAGAATTTTGCTGTGTGCTTCTTCAATATCATATCTTCTTGTTTTTATCAGGTTAAATGTATTTCATTTATTAACATGGCCACAATATTGGCTGTATACAATGGGTATTACCTAAAAGAAAAGAATTATAAAAAAGACGTGATTCTCTACAAAGTCCACCTGTTATTCTATAGAACTAGGAACTTTATGGGTGTACCAAAAGAAAATAAGAGACTGAGGGATACTACTGTACAGAGTAAAACTCAACTCTACCCCCTCAAAGCTCTTCTATTTCTCTATCTCCAAACTACCCACTCAACGTTAGAGGAATCACATTACATGCCCTACTTCTCGTCCTCCAACAAAACATCAAGTCTTCCACAATATTTGGCATTGCCCAAAAGTTCCAAACCACTAAAGCATGTCCACCATAACCTCATGGTAAAAACACAATGTAGGAGACAATGATCCACGTATATGTAACACCAACTGACATTGACAATCTTTTGCTTTCTAAGATTTTGTGCCGTCAAGATCACCCCTCTAGCAGCCAGATGAGAGAAAAAGCACACCTTCCTCGGCACATGTGGTGTCCATATTGCATCATACAAACCCTAACCAAAAGCTTCTCATAGAGAAAACTCCATTATTCCCCAAACCCCACCGCAAAGCATCAGAGTTATCAAATGAAATGACTTGCCTGTGTAAAATGGCCGACAACCTGTGAAGCTCAGTCACCTCCAAATCGTGGAAATCCCTTCTAAAGTTCAAAAAGTCGCTAGTGTTCTAATTTGTTGGATCGTCAAGTCTTCTTGTCATGATATTCGGAACAAACTCCGAAATTCAATTTTCAGTAAGTTATCCCCACACAACGTATGTTCCCACAAATTGATTCTCTTTCCATTTCCTACCTTGAATGAGATATTTTCATTAAAATCTTCCCATCCCTTCAGTATGTTTCTTCACAGTCTGCATCCAAAAGGCATAGTGACATCTCTAGTTCTCGATCCCTCTGTTATTTCCCTATATTTATCAGCTATTTCACCTCTCCAAAGATTTCAATACCATATCTTATGTTGGAGCTATCATAGATTTCATTTTATCATGCAAGTCTCAAGTTCTATTAGTCCTTCCTTTTAAACTGAGAGCATTTATATAATCAATGAAGGTTTATTCAGATTTGCTTATGAAGTCAGGTCTTATATTCTTCAAGTATTGATTGTCTCTTCATTTGATCTCTCTGGGACCTGGGCTTCATTTTTTATATGATTTAACAGAGTTTCCTAATCATGAAAAATACAGTGTCTGAAATGCTGTTTATGTGCCTGTGCTGTTATCGCTGCTATGTGCTTGATTTTGCAAAGAAAATTATTTTTGGAATTGGCTACAATCTCTTGATTCGATTAGTTACTCTAGTTTTCATCCCATCAGCTTATCTAACTTCTTTTATGCGGTTGTACTGTTGTTATTGCTATGTGTGCATTATATTGGAAAATAATAGAATTTGTAACGATTTCTCAGTGCATGTAATTGATTCTGTTTTAAGTGCTCAACAAATCTTGGGTTGTTGATGGGGGAAGGAGTGTGCTGAGGCTTACATGCACCTGTTTTTCCTTATTGTTTTTACTTTTATCCTCTCTCTAGTCTTCAATTGGATACTGCAGAGGCATTGCTAATTGCTGTTATTTTGTTTTCCTTTAGAATATGCAATCAGTATGTTCCTTTCTGAGTTTGGTGAACTTCTAGTGCAATCATACAAGGTTCTTATTAGTGTAGATGATGGTGTTTTTTTTAGAGGACTATACTTTGTGTAATCTCTCTACTTTTGTATAGCATGTGTCCAAGGGGGAGCCCGAGAGTATCAATACTTCATCAAAAATAAAATAAAGTAATATGTAATCCGAATATGGTGTTTTGAAATAAATGTACTTTGAAAGTGGTTTTAGGTGATATTGTGATCACATTGATATAACTGCCGTATTAAGTGATCTGTATCTTCACCTTGTTGTTCTAACTTCATGATCCTGAACAGCCTCTGTCTTGAAGGAAAAGCTCTCAGCCCTTGGTTCATCCGGAATATTAGCTGATCATCAACTTAAAGCGCAGCTGCAAGAGCATTATTTGAAAGGGTGAGTTAATTTAGCCTTAGGCCCTTAGCATTATTCACTTTCTATCAGAACTAGTAACATTCAGGATACCCTGGTTGTGACCTGTAAGTATATCAAAAAATGTTGGTACTATCTAACTGTTCTTATGGACATTCATATTTACACAGTTTTTCAGCTAAGGAGGATGGGTTGGCAATTTTTTGTTCAAAAGCGACAAGGGATGACGTAACTATTTTTTCCCTTGAGAATGATAACTTGAGTATTAAAGAAAAAGGCACTAGGATAGTGCTAAAACTATAAATACAGAGAGAAAGGGCAGCTGATCCAACTATGAAACCCTAACAGTTACAGAGCAGCTATCAAACCTACTAAGGATACTGCTTCCACTACAAAAATGAAATCCTAACAGTTACAGGCACTAGGAGATTGCTTTCTTCTTTATGCCAAAAATGAAGTGCTTTCTCATCACTAGGTAATGCTGAAAGGGTTAAATTGCATTCCTCATCACTAAACTAAGCTTAAGTGACCGTTAGATAAATACAATTGGAGATACACATGAGTCAATAGAAAGTAGAAAATATATCTTGACTTCCAAAAAGATAACCACACCACAGAAGTGGTGATAAGAGTGGTTTTGTTGTCTTCTTGGTGGTGTAAGGCTATAGACATCTTTCATCGTATTGCTTGACTGATCTTTGGCGAGGTTGAAGAACTTGGTATTCTTAATTTATCTCTTGTAGCCTGAGGACACCCGATCCTCACCTCTGTAGTCTGAGTGCATATTATACATTTAACATATGTCCATTTATTAATTATATATATTGCAAATCAGTTTATCAGCCATCTACTAGAAACCTAGTTATTAATCATTATTTGTAGGGTGTAGCCTATCTTTTTGTCATATTAACCATTTTGGAAACTCTATTACATTACGTGGAATACTTGACCTTTATTAGTAAATAGCAATTGTACTAACTTCTCTTTGAAAACTTTTGTTGGTTCGCTAATTTTTCTCGTTGTCTACTTGTTTAATTCTCCGATTTTACTACTTATCTATTGAGTTGCCAGAAGGTTTTTACAACTAATGTTTGGTTAATTTTCTTGTGTCAGACAAAGTCAGCTCACAATTTCGGATATAGCGAGAAAGGCTTTTCTTTATAGCGTAAGCCATTTCTCTTTGTTTCACAATTTTTTCTTTGGAAAGTATGGCCTATCTTATATGGATCTTTCCTAAAATTTGAGGGGGCTACAAAAATCCTAGTTGATTTCTTTCCATCCTCCTAAACTTCAGTTGACAAAGTTACCCTATGTATTGGTGGGACGTAGCATGTACCTTGTGGAATAACAAAGGTGCATTCAAGCTGACACACACACCATAATCATCAAAGAAAAGATTGAGGAGATTAGTAGATTGTTTGAAAAATAATACTTGCCTTTTCTATGATAGTAAATAATGGAATCATTTTCAGTTAAACCAAACTTTCTTCATAATTTGTGAGGAGTTGCATTGCTAGCTAATAGTGGGTTGGAGATATGCAGGACAGCGGTGGCAAGTAATTAGAAGGGCATTATTGATGTGCATTTGGGGATGGTAAACTATTATAACAGGAAGTATTTGTAATGACATATTAAAGTAAAAGGGAGTTCCTTCATATTTATCCATTGGAGTTGCTAAGAAAATGATTGTTAGATGTAACTCTACTCCAAAAGTTTAGCTCATCTTATTATTGGCATCTGGAGTGTTGGACTGTAGAATTTGGGAGTTCAACATTGGGTAAATCAAGGAAAAGATGAGTTTGACTATGATGCCATGTTAAGAAAATGGAAATGGACCTTGAGTATAATTCAACACAAAAAATTAGCTCATTAGGTGATATGATTGTTCAACATCGTGTAGAGAGTCGATGTGGAAATTCTAATAGGAGGGAAGGTACACTTAATTTTGTTAAGATTGAAGTATTGCAAATTTCACCATATCTTTTAGTTTTTTTATTTATTGAATCTTAGTGAAAAGTAGAAAGTTATAAGAATGACCTCTGAGCCTTTCAACACTTCTTCATGAGGTTTCTAAGAAACAAATGGAGTTTTATTGAATCGTGTATACTATATACCTTCTCATTTAAAAGTTTTTAAAACGAGACATTACTTTATGTAATTATGTCTTTAAAATAACTCTTCTGATACTGTTTATCTTTTTTCTTGAGCCAATCATGTGAGAATTTTATGACGTGTGATAGTGATACTTACAAGATGTGCCAGCTCTAGTACCATATTGAATCTGTCTCCTGATTTAAAAGTTTAAGCATGAGAGATGTTACACGTTTACATTTTAATTATGTTTTTAACCAACTATCAACCAGGGAAATAAATTGTCCTTTTTTATAAATAATAAGTGAATGAAGTGTTAGTAGAAATTTGTATACCATGTAAATTATGATAATTTTTTGCATCTTGTTAGCTCCCTGATCCTAGAGTAGACTGTTTATACTATGGAGCTAACTCAGTTTTAATGTAACATCATTTGTAATTTTGCATCTACTTAATGCCATCAATTATACCATTTATTTCACTCACATGAAAAAACTTTAGAACTAGATTTGACTGGTCGTTCATGCAAGCTATATTATTTATACGTAGAGTGTATAGGTCAGTCTTATCATATCATCAACTCAATAATTGACCTTCATCGTGTTGCTGAATCTAATTGTTGCATTACAGATGAAATGATTGTGCGCTGTTTAGGACATTATTTTTAGATGTGAAAGCACAAAAAATCTACCAAAAAAGCTAAAAGGTCTATGGGGCTTGAAGCAAAAAAGTAGAAATGAAGTGCATAGTTTACAAAATTGAAAAAAAATCCAAATATTCAATCAGTTCTATCATAGACGAATTGCAATAAAATAACTAATTTTAGCATGCAATATGCAAATAATTCCGACATTACTTGAAAGCCTCAAAGTTGAATTTGAAGAACCAGTTACGTTTCACTGGGGTCACTTTGGTTTTCATTGTTCAAAGCGTACATTCCTCTGAAGAACATCCTCTAAAGTCAAATTAACACTAACTTGCCTTTTGAGGCAAGAAGTCAATATTTATAAGAAAAAGTCACCTTGTGAACTTCTTTTGGCAGCATTTTATGGAAGGTCATGCAAAAACTGTTCCAATTTCCCGGTTACCTCTCATCACAATTCTGGATACCAAACATTATTTGAGAG</genome_strand>
        <mrna_strand>TGCCGCAANCGAATCCATGGACATCCCGAGAATTCTATCTCAGCAAGGAGGACAACCAGCTTATCCACTTCCTCGAATCAGGGCTTTAGAAGTTCACCCAAAATTAAATCTATCTGCATTGCTTTTTATG.........................................................................AATTTGACTGGTGCTGACAATAGAAAAAATAGAGCTGCTTTTACTAGGGATGGAAGGAAACAATTATTTGCAGTTCTGCAAGGAGCAAGGGGATCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTCTTGAAGGAAAAGCTCTCAGCCCTTGGTTCATCCGGAATATTAGCTGATCATCAACTTAAAGCGCAGCTGCAAGAGCATTATTTGAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGTCAGCTCACAATTTCGGATATAGCGAGAAAGGCTTTTCTTTATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTATGGAAGGTCATGCAAAAACTGTTCCAATTTCCCGGTTACCTCTCATCACAATTCTGGATACCAAACATTATTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>85</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="17276" PGL_stop="22962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17276" e_stop="17728"/>
            <exon e_start="18003" e_stop="18132"/>
            <exon e_start="20243" e_stop="20692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17276" e_stop="17728" e_length="453"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.799">
            <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18003" e_stop="18132" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="20243" e_stop="20692" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17276" stop="17728"/>
              <exon start="18003" stop="18056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17285" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17301" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17309" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17316" stop="17728"/>
              <exon start="18003" stop="18111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17326" stop="17728"/>
              <exon start="18003" stop="18126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17334" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17334" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17336" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17356" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17364" stop="17728"/>
              <exon start="18003" stop="18048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17459" stop="17716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17606" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17701" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17702" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17702" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17702" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17702" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17710" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17711" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAAACCCGAATTTTCCTGAGGGAGTTTACCCATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG : ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG : GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</gDNA_template>
            <first_frame> P  K  P  E  F  S  *  G  S  L  P  I  S  P  T  L  D  A  F  T  G  M  S  K  W  W  R  A  V  A  T  T  A  G  G  L  R  S  T  E  V  T  S  R  R  T  Y  F  T  I  Q  A  I  P  R  E  V  S  G  R  R  V  S  S  R  D  R  A  Q  G  R  I  P  A  V  V  F  S  Q  N  Y  V  Q  S  K  P  D  D  P  T  S  I  V  A  A  S  S  V  S  R  K  F  L  L  T  T  E  R  K  Q  I  K  T  I  I  D  S  V  D  L  P  F  F  C  S  T  T  F  P  L  Q  I  R  A  G  S  G  S  S  T  L  L  E  S  G  K  V  L  P  I  K  :  I  H  K  D  E  E  T  G  K  I  L  N  L  V  F  V  W  A  E  D  G  T  K  L  R  V  D  V  P  V  V  F  K  G  E  H  E  C  P  G  L  K  K   : G  G  Y  L  N  K  I  R  P  S  L  K  L  L  C  P  A  E  N  I  P  Q  K  I  E  V  D  I  S  Q  L  D  V  E  D  K  V  S  L  H  D  I  D  V  H  P  T  W  K  L  L  S  K  N  E  T  I  P  V  C  K  V  K  A  T  P  V  D  S  *  F  C  R  C  Y  F  S  T  G  R  C  I  *  S  L  H  *  F  N  I  V  C  S  N  F  D  L  V  S  *  W  C  I  W  T  R  S  K  D  I  R  N  F  C  Y  T  V  V  V  K  L  L  F  W  E  L  F  *  N  N  K  L  V  H  *  *  V  N  W  K  C  N  C  S  L  F  K  F  F  S  </first_frame>
            <second_frame>  L  N  P  N  F  P  E  G  V  Y  P  F  L  Q  H  S  T  L  S  R  E  C  R  N  G  G  V  R  W  Q  P  P  P  E  V  *  G  R  R  R  *  L  A  G  E  R  I  L  Q  F  K  R  S  L  G  R  S  A  E  E  E  F  P  V  G  T  E  P  K  V  V  F  R  P  L  F  S  H  R  T  T  S  S  Q  N  L  T  I  Q  L  P  L  S  P  Q  V  L  F  L  E  S  S  S  L  Q  L  K  G  S  R  L  K  R  S  L  I  R  L  I  S  L  S  F  V  R  Q  P  S  L  F  R  F  E  L  V  R  A  R  Q  L  Y  W  N  L  E  K  Y  F  P  L  R :   F  I  R  M  K  K  L  V  R  Y  *  I  W  S  L  Y  G  L  K  M  E  Q  N  *  G  S  T  C  L  L  C  S  K  G  S  T  S  A  L  V  S  R  K  :  V  V  I  *  T  R  L  D  L  P  *  S  C  C  A  Q  R  R  I  Y  L  K  K  L  R  W  T  *  V  S  *  M  L  K  T  K  C  P  C  M  I  S  M  F  I  Q  L  G  S  S  *  A  R  M  K  P  S  L  F  V  R  L  R  Q  R  Q  L  I  A  N  F  V  D  A  I  F  Q  L  A  D  A  S  E  V  S  I  S  S  T  L  S  V  L  I  L  T  W  F  R  S  G  V  Y  G  H  G  Q  K  T  L  E  T  F  A  I  L  *  *  *  N  C  Y  F  G  N  C  S  R  I  I  N  L  C  I  N  E  *  I  G  N  A  T  A  V  F  L  S  F  L  V </second_frame>
            <third_frame>   *  T  R  I  F  L  R  E  F  T  H  F  S  N  T  R  R  F  H  G  N  V  E  M  V  A  C  G  G  N  H  R  R  R  S  E  V  D  G  G  N  *  Q  E  N  V  F  Y  N  S  S  D  P  *  G  G  Q  R  K  K  S  F  Q  *  G  P  S  P  R  S  Y  S  G  R  C  F  L  T  E  L  R  P  V  K  T  *  R  S  N  F  H  C  R  R  K  F  C  F  *  K  V  P  P  Y  N  *  K  E  A  D  *  N  D  H  *  F  G  *  S  P  F  L  L  F  D  N  L  P  S  S  D  S  S  W  F  G  L  V  N  F  T  G  I  W  K  S  T  S  H  *   : D  S  *  G  *  R  N  W  *  D  I  E  F  G  L  C  M  G  *  R  W  N  K  I  K  G  R  R  A  C  C  V  Q  R  G  A  R  V  P  W  S  Q  E  R :   W  L  S  K  Q  D  *  T  F  P  K  V  V  V  P  S  G  E  Y  T  S  K  N  *  G  G  H  K  S  A  R  C  *  R  Q  S  V  P  A  *  Y  R  C  S  S  N  L  E  A  L  K  Q  E  *  N  H  P  C  L  *  G  *  G  N  A  S  *  *  L  I  L  S  M  L  F  F  N  W  Q  M  H  L  K  S  P  L  V  Q  H  C  L  F  *  F  *  P  G  F  V  V  V  Y  M  D  T  V  K  R  H  *  K  L  L  L  Y  C  S  S  K  I  A  I  L  G  I  V  L  E  *  *  T  C  A  L  M  S  K  L  E  M  Q  L  Q  S  F  *  V  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17297" stop="17728"/>
                    <exon start="18003" stop="18132"/>
                    <exon start="20243" stop="20451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLPISPTLDAFTGMSKWWRAVATTAGGLRSTEVTSRRTYFTIQAIPREVSGRRVSSRDRAQGRIPAVVFSQNYVQSKPDDPTSIVAASSVSRKFLLTTERKQIKTIIDSVDLPFFCSTTFPLQIRAGSGSSTLLESGKVLPIKIHKDEETGKILNLVFVWAEDGTKLRVDVPVVFKGEHECPGLKKGGYLNKIRPSLKLLCPAENIPQKIEVDISQLDVEDKVSLHDIDVHPTWKLLSKNETIPVCKVKATPVDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17276" e_stop="17728"/>
            <exon e_start="18003" e_stop="18132"/>
            <exon e_start="20243" e_stop="20689"/>
            <exon e_start="22949" e_stop="22962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.094" e_score="1.000"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17276" e_stop="17728" e_length="453"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.799">
            <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18003" e_stop="18132" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20243" e_stop="20689" e_length="447"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.094">
            <gDNA_intron_boundary i_start="20690" i_stop="22948" i_length="2259"/>
          </intron>
          <exon e_serial="4" e_score="0.929">
            <gDNA_exon_boundary e_start="22949" e_stop="22962" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17276" stop="17728"/>
              <exon start="18003" stop="18056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17285" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17301" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17309" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17316" stop="17728"/>
              <exon start="18003" stop="18111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17326" stop="17728"/>
              <exon start="18003" stop="18126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17334" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17334" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17336" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17356" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17364" stop="17728"/>
              <exon start="18003" stop="18048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17459" stop="17716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17606" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17702" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17702" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17710" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18028" stop="18132"/>
              <exon start="20243" stop="20689"/>
              <exon start="22949" stop="22962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAAACCCGAATTTTCCTGAGGGAGTTTACCCATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG : ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG : GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTA : AAAAAAAAAAGAAA</gDNA_template>
            <first_frame> P  K  P  E  F  S  *  G  S  L  P  I  S  P  T  L  D  A  F  T  G  M  S  K  W  W  R  A  V  A  T  T  A  G  G  L  R  S  T  E  V  T  S  R  R  T  Y  F  T  I  Q  A  I  P  R  E  V  S  G  R  R  V  S  S  R  D  R  A  Q  G  R  I  P  A  V  V  F  S  Q  N  Y  V  Q  S  K  P  D  D  P  T  S  I  V  A  A  S  S  V  S  R  K  F  L  L  T  T  E  R  K  Q  I  K  T  I  I  D  S  V  D  L  P  F  F  C  S  T  T  F  P  L  Q  I  R  A  G  S  G  S  S  T  L  L  E  S  G  K  V  L  P  I  K  :  I  H  K  D  E  E  T  G  K  I  L  N  L  V  F  V  W  A  E  D  G  T  K  L  R  V  D  V  P  V  V  F  K  G  E  H  E  C  P  G  L  K  K   : G  G  Y  L  N  K  I  R  P  S  L  K  L  L  C  P  A  E  N  I  P  Q  K  I  E  V  D  I  S  Q  L  D  V  E  D  K  V  S  L  H  D  I  D  V  H  P  T  W  K  L  L  S  K  N  E  T  I  P  V  C  K  V  K  A  T  P  V  D  S  *  F  C  R  C  Y  F  S  T  G  R  C  I  *  S  L  H  *  F  N  I  V  C  S  N  F  D  L  V  S  *  W  C  I  W  T  R  S  K  D  I  R  N  F  C  Y  T  V  V  V  K  L  L  F  W  E  L  F  *  N  N  K  L  V  H  *  *  V  N  W  K  C  N  C  S  L  F  K  F  F   : K  K  K  K  K </first_frame>
            <second_frame>  L  N  P  N  F  P  E  G  V  Y  P  F  L  Q  H  S  T  L  S  R  E  C  R  N  G  G  V  R  W  Q  P  P  P  E  V  *  G  R  R  R  *  L  A  G  E  R  I  L  Q  F  K  R  S  L  G  R  S  A  E  E  E  F  P  V  G  T  E  P  K  V  V  F  R  P  L  F  S  H  R  T  T  S  S  Q  N  L  T  I  Q  L  P  L  S  P  Q  V  L  F  L  E  S  S  S  L  Q  L  K  G  S  R  L  K  R  S  L  I  R  L  I  S  L  S  F  V  R  Q  P  S  L  F  R  F  E  L  V  R  A  R  Q  L  Y  W  N  L  E  K  Y  F  P  L  R :   F  I  R  M  K  K  L  V  R  Y  *  I  W  S  L  Y  G  L  K  M  E  Q  N  *  G  S  T  C  L  L  C  S  K  G  S  T  S  A  L  V  S  R  K  :  V  V  I  *  T  R  L  D  L  P  *  S  C  C  A  Q  R  R  I  Y  L  K  K  L  R  W  T  *  V  S  *  M  L  K  T  K  C  P  C  M  I  S  M  F  I  Q  L  G  S  S  *  A  R  M  K  P  S  L  F  V  R  L  R  Q  R  Q  L  I  A  N  F  V  D  A  I  F  Q  L  A  D  A  S  E  V  S  I  S  S  T  L  S  V  L  I  L  T  W  F  R  S  G  V  Y  G  H  G  Q  K  T  L  E  T  F  A  I  L  *  *  *  N  C  Y  F  G  N  C  S  R  I  I  N  L  C  I  N  E  *  I  G  N  A  T  A  V  F  L  S  F  L  :  K  K  K  R   </second_frame>
            <third_frame>   *  T  R  I  F  L  R  E  F  T  H  F  S  N  T  R  R  F  H  G  N  V  E  M  V  A  C  G  G  N  H  R  R  R  S  E  V  D  G  G  N  *  Q  E  N  V  F  Y  N  S  S  D  P  *  G  G  Q  R  K  K  S  F  Q  *  G  P  S  P  R  S  Y  S  G  R  C  F  L  T  E  L  R  P  V  K  T  *  R  S  N  F  H  C  R  R  K  F  C  F  *  K  V  P  P  Y  N  *  K  E  A  D  *  N  D  H  *  F  G  *  S  P  F  L  L  F  D  N  L  P  S  S  D  S  S  W  F  G  L  V  N  F  T  G  I  W  K  S  T  S  H  *   : D  S  *  G  *  R  N  W  *  D  I  E  F  G  L  C  M  G  *  R  W  N  K  I  K  G  R  R  A  C  C  V  Q  R  G  A  R  V  P  W  S  Q  E  R :   W  L  S  K  Q  D  *  T  F  P  K  V  V  V  P  S  G  E  Y  T  S  K  N  *  G  G  H  K  S  A  R  C  *  R  Q  S  V  P  A  *  Y  R  C  S  S  N  L  E  A  L  K  Q  E  *  N  H  P  C  L  *  G  *  G  N  A  S  *  *  L  I  L  S  M  L  F  F  N  W  Q  M  H  L  K  S  P  L  V  Q  H  C  L  F  *  F  *  P  G  F  V  V  V  Y  M  D  T  V  K  R  H  *  K  L  L  L  Y  C  S  S  K  I  A  I  L  G  I  V  L  E  *  *  T  C  A  L  M  S  K  L  E  M  Q  L  Q  S  F  *  V  F  * :   K  K  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17297" stop="17728"/>
                    <exon start="18003" stop="18132"/>
                    <exon start="20243" stop="20451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLPISPTLDAFTGMSKWWRAVATTAGGLRSTEVTSRRTYFTIQAIPREVSGRRVSSRDRAQGRIPAVVFSQNYVQSKPDDPTSIVAASSVSRKFLLTTERKQIKTIIDSVDLPFFCSTTFPLQIRAGSGSSTLLESGKVLPIKIHKDEETGKILNLVFVWAEDGTKLRVDVPVVFKGEHECPGLKKGGYLNKIRPSLKLLCPAENIPQKIEVDISQLDVEDKVSLHDIDVHPTWKLLSKNETIPVCKVKATPVDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="25566" PGL_stop="26710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25566" e_stop="26205"/>
            <exon e_start="26483" e_stop="26612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="25566" e_stop="26205" e_length="640"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26206" i_stop="26482" i_length="277"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26483" e_stop="26612" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25566" stop="26001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25571" stop="26160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25915" stop="26205"/>
              <exon start="26483" stop="26612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTGTACAACTTTTTTCCGGGAACCCGCCGACGCCGACCAACCCGACGCCGGCGAGTTTTCCCACCTTTTTTACCCTTCTCCGAGGTTCCTCTGTTTTCAACTATGCTCCTGAACGCAGGTTTTGTACAGTGTTATTATTATTATCTTTTTAAGGCCTCAAACGTACCATGCATTTTGTAACCAAAACTACCACAGGCAATGCGTTGGTGGCAGAGCGCCTTTTCATCTTCCTCCGGTTCGTCTTCCTCTTCCTCGTCATGCTCCTCTTCCAAAGTATACTCTGACGATAGCCTCCTTGCCTCCGGTGGAGGCATTCGTTACACCATCAAATCCGCTTTTTTCTTCGCCCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCGTTCTCACTGTTCCAATGATAATTTGCCGTCCAAATATTCCTCCGATCGTCCGCCTCCGCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCCGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGGAGAGGATTCTTCCACCCGTAAGGATGGTGTAGCATCCCATGGAAG : CAGATTATCAAGCCAAGATGGTCGAAAGAAGAAAAAAGAGCACTTGGGAAGTCGCTTGTCTAGGAAGACACCTCAAAAGCTTCATGTTGCTGATAGAGCTTCTGATATCAGGATCAGCGCACCCATTAGT</gDNA_template>
            <first_frame> S  C  T  T  F  F  R  E  P  A  D  A  D  Q  P  D  A  G  E  F  S  H  L  F  Y  P  S  P  R  F  L  C  F  Q  L  C  S  *  T  Q  V  L  Y  S  V  I  I  I  I  F  L  R  P  Q  T  Y  H  A  F  C  N  Q  N  Y  H  R  Q  C  V  G  G  R  A  P  F  H  L  P  P  V  R  L  P  L  P  R  H  A  P  L  P  K  Y  T  L  T  I  A  S  L  P  P  V  E  A  F  V  T  P  S  N  P  L  F  S  S  P  V  S  A  D  T  L  A  R  K  N  S  K  I  L  R  N  M  T  V  M  T  G  V  L  T  V  P  M  I  I  C  R  P  N  I  P  P  I  V  R  L  R  N  L  C  L  C  R  S  C  I  L  C  F  A  T  N  P  M  R  F  R  M  N  P  M  Y  H  C  H  R  P  Q  T  R  I  C  I  I  E  L  E  R  I  L  P  P  V  R  M  V  *  H  P  M  E   : A  D  Y  Q  A  K  M  V  E  R  R  K  K  S  T  W  E  V  A  C  L  G  R  H  L  K  S  F  M  L  L  I  E  L  L  I  S  G  S  A  H  P  L   </first_frame>
            <second_frame>  L  V  Q  L  F  S  G  N  P  P  T  P  T  N  P  T  P  A  S  F  P  T  F  F  T  L  L  R  G  S  S  V  F  N  Y  A  P  E  R  R  F  C  T  V  L  L  L  L  S  F  *  G  L  K  R  T  M  H  F  V  T  K  T  T  T  G  N  A  L  V  A  E  R  L  F  I  F  L  R  F  V  F  L  F  L  V  M  L  L  F  Q  S  I  L  *  R  *  P  P  C  L  R  W  R  H  S  L  H  H  Q  I  R  F  F  L  R  P  *  A  P  T  R  S  R  E  K  T  P  K  S  Y  G  T  *  R  *  *  L  A  F  S  L  F  Q  *  *  F  A  V  Q  I  F  L  R  S  S  A  S  A  T  F  A  F  A  G  A  A  S  C  A  S  P  R  I  R  C  G  F  E  *  T  Q  C  T  T  A  I  A  L  R  R  A  F  A  S  *  N  W  R  G  F  F  H  P  *  G  W  C  S  I  P  W  K  :  Q  I  I  K  P  R  W  S  K  E  E  K  R  A  L  G  K  S  L  V  *  E  D  T  S  K  A  S  C  C  *  *  S  F  *  Y  Q  D  Q  R  T  H  *  </second_frame>
            <third_frame>   L  Y  N  F  F  P  G  T  R  R  R  R  P  T  R  R  R  R  V  F  P  P  F  L  P  F  S  E  V  P  L  F  S  T  M  L  L  N  A  G  F  V  Q  C  Y  Y  Y  Y  L  F  K  A  S  N  V  P  C  I  L  *  P  K  L  P  Q  A  M  R  W  W  Q  S  A  F  S  S  S  S  G  S  S  S  S  S  S  S  C  S  S  S  K  V  Y  S  D  D  S  L  L  A  S  G  G  G  I  R  Y  T  I  K  S  A  F  F  F  A  R  K  R  R  H  A  R  A  K  K  L  Q  N  L  T  E  H  D  G  D  D  W  R  S  H  C  S  N  D  N  L  P  S  K  Y  S  S  D  R  P  P  P  Q  P  L  P  L  P  E  L  H  L  V  L  R  H  E  S  D  A  V  S  N  E  P  N  V  P  L  P  S  P  S  D  A  H  L  H  H  R  T  G  E  D  S  S  T  R  K  D  G  V  A  S  H  G  S :   R  L  S  S  Q  D  G  R  K  K  K  K  E  H  L  G  S  R  L  S  R  K  T  P  Q  K  L  H  V  A  D  R  A  S  D  I  R  I  S  A  P  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25748" stop="26205"/>
                    <exon start="26483" stop="26612"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLPQAMRWWQSAFSSSSGSSSSSSSCSSSKVYSDDSLLASGGGIRYTIKSAFFFARKRRHARAKKLQNLTEHDGDDWRSHCSNDNLPSKYSSDRPPPQPLPLPELHLVLRHESDAVSNEPNVPLPSPSDAHLHHRTGEDSSTRKDGVASHGSRLSSQDGRKKKKEHLGSRLSRKTPQKLHVADRASDIRISAPIS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25680" stop="26192"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQVLYSVIIIIFLRPQTYHAFCNQNYHRQCVGGRAPFHLPPVRLPLPRHAPLPKYTLTIASLPPVEAFVTPSNPLFSSPVSADTLARKNSKILRNMTVMTGVLTVPMIICRPNIPPIVRLRNLCLCRSCILCFATNPMRFRMNPMYHCHRPQTRICIIELERILPPVRMV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25566" e_stop="26205"/>
            <exon e_start="26486" e_stop="26710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="25566" e_stop="26205" e_length="640"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26206" i_stop="26485" i_length="280"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="26486" e_stop="26710" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25566" stop="26001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25571" stop="26160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26041" stop="26205"/>
              <exon start="26486" stop="26710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTGTACAACTTTTTTCCGGGAACCCGCCGACGCCGACCAACCCGACGCCGGCGAGTTTTCCCACCTTTTTTACCCTTCTCCGAGGTTCCTCTGTTTTCAACTATGCTCCTGAACGCAGGTTTTGTACAGTGTTATTATTATTATCTTTTTAAGGCCTCAAACGTACCATGCATTTTGTAACCAAAACTACCACAGGCAATGCGTTGGTGGCAGAGCGCCTTTTCATCTTCCTCCGGTTCGTCTTCCTCTTCCTCGTCATGCTCCTCTTCCAAAGTATACTCTGACGATAGCCTCCTTGCCTCCGGTGGAGGCATTCGTTACACCATCAAATCCGCTTTTTTCTTCGCCCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCGTTCTCACTGTTCCAATGATAATTTGCCGTCCAAATATTCCTCCGATCGTCCGCCTCCGCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCCGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGGAGAGGATTCTTCCACCCGTAAGGATGGTGTAGCATCCCATGGAAG : ATTATCAAGCCAAGATGGTCGAAAGAAGAAAAAAGAGCACTTGGGAAGTCGCTTGTCTAGGAAGACACCTCAAAAGCTTCATGTTGCTGATAGAGCTTCTGATATCAGGATCAGCGCACCCATTAGTGCTCCTACAACTCCTTATGCAAGTCCTGGAGTCAGTCCACTAAAAGCTGGGGATCTTTTAAATCATAATTACATGGCATTCCCTGGTGCTTTTCAAGT</gDNA_template>
            <first_frame> S  C  T  T  F  F  R  E  P  A  D  A  D  Q  P  D  A  G  E  F  S  H  L  F  Y  P  S  P  R  F  L  C  F  Q  L  C  S  *  T  Q  V  L  Y  S  V  I  I  I  I  F  L  R  P  Q  T  Y  H  A  F  C  N  Q  N  Y  H  R  Q  C  V  G  G  R  A  P  F  H  L  P  P  V  R  L  P  L  P  R  H  A  P  L  P  K  Y  T  L  T  I  A  S  L  P  P  V  E  A  F  V  T  P  S  N  P  L  F  S  S  P  V  S  A  D  T  L  A  R  K  N  S  K  I  L  R  N  M  T  V  M  T  G  V  L  T  V  P  M  I  I  C  R  P  N  I  P  P  I  V  R  L  R  N  L  C  L  C  R  S  C  I  L  C  F  A  T  N  P  M  R  F  R  M  N  P  M  Y  H  C  H  R  P  Q  T  R  I  C  I  I  E  L  E  R  I  L  P  P  V  R  M  V  *  H  P  M  E   : D  Y  Q  A  K  M  V  E  R  R  K  K  S  T  W  E  V  A  C  L  G  R  H  L  K  S  F  M  L  L  I  E  L  L  I  S  G  S  A  H  P  L  V  L  L  Q  L  L  M  Q  V  L  E  S  V  H  *  K  L  G  I  F  *  I  I  I  T  W  H  S  L  V  L  F  K  </first_frame>
            <second_frame>  L  V  Q  L  F  S  G  N  P  P  T  P  T  N  P  T  P  A  S  F  P  T  F  F  T  L  L  R  G  S  S  V  F  N  Y  A  P  E  R  R  F  C  T  V  L  L  L  L  S  F  *  G  L  K  R  T  M  H  F  V  T  K  T  T  T  G  N  A  L  V  A  E  R  L  F  I  F  L  R  F  V  F  L  F  L  V  M  L  L  F  Q  S  I  L  *  R  *  P  P  C  L  R  W  R  H  S  L  H  H  Q  I  R  F  F  L  R  P  *  A  P  T  R  S  R  E  K  T  P  K  S  Y  G  T  *  R  *  *  L  A  F  S  L  F  Q  *  *  F  A  V  Q  I  F  L  R  S  S  A  S  A  T  F  A  F  A  G  A  A  S  C  A  S  P  R  I  R  C  G  F  E  *  T  Q  C  T  T  A  I  A  L  R  R  A  F  A  S  *  N  W  R  G  F  F  H  P  *  G  W  C  S  I  P  W  K  :  I  I  K  P  R  W  S  K  E  E  K  R  A  L  G  K  S  L  V  *  E  D  T  S  K  A  S  C  C  *  *  S  F  *  Y  Q  D  Q  R  T  H  *  C  S  Y  N  S  L  C  K  S  W  S  Q  S  T  K  S  W  G  S  F  K  S  *  L  H  G  I  P  W  C  F  S  S </second_frame>
            <third_frame>   L  Y  N  F  F  P  G  T  R  R  R  R  P  T  R  R  R  R  V  F  P  P  F  L  P  F  S  E  V  P  L  F  S  T  M  L  L  N  A  G  F  V  Q  C  Y  Y  Y  Y  L  F  K  A  S  N  V  P  C  I  L  *  P  K  L  P  Q  A  M  R  W  W  Q  S  A  F  S  S  S  S  G  S  S  S  S  S  S  S  C  S  S  S  K  V  Y  S  D  D  S  L  L  A  S  G  G  G  I  R  Y  T  I  K  S  A  F  F  F  A  R  K  R  R  H  A  R  A  K  K  L  Q  N  L  T  E  H  D  G  D  D  W  R  S  H  C  S  N  D  N  L  P  S  K  Y  S  S  D  R  P  P  P  Q  P  L  P  L  P  E  L  H  L  V  L  R  H  E  S  D  A  V  S  N  E  P  N  V  P  L  P  S  P  S  D  A  H  L  H  H  R  T  G  E  D  S  S  T  R  K  D  G  V  A  S  H  G  R :   L  S  S  Q  D  G  R  K  K  K  K  E  H  L  G  S  R  L  S  R  K  T  P  Q  K  L  H  V  A  D  R  A  S  D  I  R  I  S  A  P  I  S  A  P  T  T  P  Y  A  S  P  G  V  S  P  L  K  A  G  D  L  L  N  H  N  Y  M  A  F  P  G  A  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25748" stop="26205"/>
                    <exon start="26486" stop="26708"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLPQAMRWWQSAFSSSSGSSSSSSSCSSSKVYSDDSLLASGGGIRYTIKSAFFFARKRRHARAKKLQNLTEHDGDDWRSHCSNDNLPSKYSSDRPPPQPLPLPELHLVLRHESDAVSNEPNVPLPSPSDAHLHHRTGEDSSTRKDGVASHGRLSSQDGRKKKKEHLGSRLSRKTPQKLHVADRASDIRISAPISAPTTPYASPGVSPLKAGDLLNHNYMAFPGAFQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="28554" PGL_stop="33297"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28554" e_stop="28674"/>
            <exon e_start="29596" e_stop="29805"/>
            <exon e_start="29906" e_stop="30644"/>
            <exon e_start="31841" e_stop="31861"/>
            <exon e_start="32187" e_stop="32236"/>
            <exon e_start="32928" e_stop="32975"/>
            <exon e_start="33284" e_stop="33297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.986" e_score="0.983"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.967"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.873"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.857"/>
          <exon-intron don_prob="0.000" acc_prob="0.458" e_score="0.640"/>
          <exon-intron don_prob="0.932" acc_prob="0.614" e_score="0.583"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="28554" e_stop="28674" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.986">
            <gDNA_intron_boundary i_start="28675" i_stop="29595" i_length="921"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="29596" e_stop="29805" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="29806" i_stop="29905" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.873">
            <gDNA_exon_boundary e_start="29906" e_stop="30644" e_length="739"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30645" i_stop="31840" i_length="1196"/>
          </intron>
          <exon e_serial="4" e_score="0.857">
            <gDNA_exon_boundary e_start="31841" e_stop="31861" e_length="21"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31862" i_stop="32186" i_length="325"/>
          </intron>
          <exon e_serial="5" e_score="0.640">
            <gDNA_exon_boundary e_start="32187" e_stop="32236" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.458">
            <gDNA_intron_boundary i_start="32237" i_stop="32927" i_length="691"/>
          </intron>
          <exon e_serial="6" e_score="0.583">
            <gDNA_exon_boundary e_start="32928" e_stop="32975" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.932" acc_prob="0.614">
            <gDNA_intron_boundary i_start="32976" i_stop="33283" i_length="308"/>
          </intron>
          <exon e_serial="7" e_score="0.429">
            <gDNA_exon_boundary e_start="33284" e_stop="33297" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28554" stop="28674"/>
              <exon start="29596" stop="29805"/>
              <exon start="29906" stop="30368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30231" stop="30644"/>
              <exon start="31841" stop="31861"/>
              <exon start="32187" stop="32236"/>
              <exon start="32928" stop="32975"/>
              <exon start="33284" stop="33297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGTCAGTTATGCAGACGGATACTACCACTGATCTCGCCTTTGCCACTGATATATGGAGTTTGGGTTGTACAGTAATTGAAATGCTGAACGGCAGACCACCTTGGAGTGAATATGAAGCA : GCTGCAGCCATGTTCAAGGTTCTAAAAGATACGCCTCCAATACCGGAAACATTATCACGTGAAGGGAAAGATTTCTTGCGCTGTTGTTTCTGTAGGAACCCAGCGGAAAGGCCCTCGGCCAGCATGTTATTAGAACATCGATTTATGAGAGTATCTCATCAGCCAGATGTATCTTCTTTCATCAAACCAGTTGGTGTAATACGAGTCAAA : GAAAAGTCAAATTCTCAAAAAGAGCAGACAACATACAATCTTCACCAAGGGCGTTTATCGCTAGAGAGGTAGCTCTTAAAAAAAACTGTCAGTGGAAGGGACAATTAGATTGCAAAGAGACTGCTTATGCGAACACGTTCATGAGATGGACATTTATTCTTCTCTGCAATTGGGACAGGCCAGCTGTGCATCATTGGAGTTCCAACTAAATATCGGAGCCCCATCATTTCGCTCGTTCAAATCCCCTATGGTCCTGTCGGCATTTAATCCCCAGCCTGCTCGGTGTAAAGTCATTGCCAACCAAAACTGGGTGCAACTACAAAATCTCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTTGGTTTCTCTTTCAACGAGAGCTGAACTCGTGAATACAATGTAAACCTCTATATATGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCAGTAGGTGCTCTGGCTTGTTGTCAATATTAACACCTCGAGAGGAACATAGGTTTATTATCATCCAGGGAAGTTTTTTCCTGCTGACCTTGGAGTTTAGAAGTAGATTTTCTGTAATGACTTCCAAAGCAGGAGATTCAATAATAATCAAAAGAAAATGAAATGCTTTGACAAATTATACAATTCTTTACTGAATCTCACAATCATGTCTACTGGTTTTGTTTGTATCTCATGATTGCTTATATTGCAACTTAGTGGCTATATTTTTCAGTGTGTTAA : AAAAAAAAAATTAATCTCACA : AAATTAATAACTAGCAGATTGGAAAAAAAAAATTATCCAGAAAAAAGATA : CACGGACCAAATGTCCAAATTCATTGTTCACGGATGATGACTAGAATT : ACGATTTAAGAAGT</gDNA_template>
            <first_frame> A  V  S  Y  A  D  G  Y  Y  H  *  S  R  L  C  H  *  Y  M  E  F  G  L  Y  S  N  *  N  A  E  R  Q  T  T  L  E  *  I  *  S   : S  C  S  H  V  Q  G  S  K  R  Y  A  S  N  T  G  N  I  I  T  *  R  E  R  F  L  A  L  L  F  L  *  E  P  S  G  K  A  L  G  Q  H  V  I  R  T  S  I  Y  E  S  I  S  S  A  R  C  I  F  F  H  Q  T  S  W  C  N  T  S  Q   : R  K  V  K  F  S  K  R  A  D  N  I  Q  S  S  P  R  A  F  I  A  R  E  V  A  L  K  K  N  C  Q  W  K  G  Q  L  D  C  K  E  T  A  Y  A  N  T  F  M  R  W  T  F  I  L  L  C  N  W  D  R  P  A  V  H  H  W  S  S  N  *  I  S  E  P  H  H  F  A  R  S  N  P  L  W  S  C  R  H  L  I  P  S  L  L  G  V  K  S  L  P  T  K  T  G  C  N  Y  K  I  S  T  D  F  G  M  E  V  A  V  I  L  F  G  F  S  F  N  E  S  *  T  R  E  Y  N  V  N  L  Y  I  C  A  V  *  I  A  *  N  R  K  L  S  W  S  Q  *  V  L  W  L  V  V  N  I  N  T  S  R  G  T  *  V  Y  Y  H  P  G  K  F  F  P  A  D  L  G  V  *  K  *  I  F  C  N  D  F  Q  S  R  R  F  N  N  N  Q  K  K  M  K  C  F  D  K  L  Y  N  S  L  L  N  L  T  I  M  S  T  G  F  V  C  I  S  *  L  L  I  L  Q  L  S  G  Y  I  F  Q  C  V  K :   K  K  K  L  I  S  Q :   N  *  *  L  A  D  W  K  K  K  I  I  Q  K  K  D   : T  R  T  K  C  P  N  S  L  F  T  D  D  D  *  N   : Y  D  L  R  S </first_frame>
            <second_frame>  Q  S  V  M  Q  T  D  T  T  T  D  L  A  F  A  T  D  I  W  S  L  G  C  T  V  I  E  M  L  N  G  R  P  P  W  S  E  Y  E  A  :  A  A  A  M  F  K  V  L  K  D  T  P  P  I  P  E  T  L  S  R  E  G  K  D  F  L  R  C  C  F  C  R  N  P  A  E  R  P  S  A  S  M  L  L  E  H  R  F  M  R  V  S  H  Q  P  D  V  S  S  F  I  K  P  V  G  V  I  R  V  K  :  E  K  S  N  S  Q  K  E  Q  T  T  Y  N  L  H  Q  G  R  L  S  L  E  R  *  L  L  K  K  T  V  S  G  R  D  N  *  I  A  K  R  L  L  M  R  T  R  S  *  D  G  H  L  F  F  S  A  I  G  T  G  Q  L  C  I  I  G  V  P  T  K  Y  R  S  P  I  I  S  L  V  Q  I  P  Y  G  P  V  G  I  *  S  P  A  C  S  V  *  S  H  C  Q  P  K  L  G  A  T  T  K  S  Q  L  I  L  G  W  K  *  Q  S  F  F  L  V  S  L  S  T  R  A  E  L  V  N  T  M  *  T  S  I  Y  V  L  C  R  *  L  E  T  E  N  *  V  G  A  S  R  C  S  G  L  L  S  I  L  T  P  R  E  E  H  R  F  I  I  I  Q  G  S  F  F  L  L  T  L  E  F  R  S  R  F  S  V  M  T  S  K  A  G  D  S  I  I  I  K  R  K  *  N  A  L  T  N  Y  T  I  L  Y  *  I  S  Q  S  C  L  L  V  L  F  V  S  H  D  C  L  Y  C  N  L  V  A  I  F  F  S  V  L   : K  K  K  N  *  S  H   : K  I  N  N  *  Q  I  G  K  K  K  L  S  R  K  K  I  :  H  G  P  N  V  Q  I  H  C  S  R  M  M  T  R  I  :  T  I  *  E   </second_frame>
            <third_frame>   S  Q  L  C  R  R  I  L  P  L  I  S  P  L  P  L  I  Y  G  V  W  V  V  Q  *  L  K  C  *  T  A  D  H  L  G  V  N  M  K  Q :   L  Q  P  C  S  R  F  *  K  I  R  L  Q  Y  R  K  H  Y  H  V  K  G  K  I  S  C  A  V  V  S  V  G  T  Q  R  K  G  P  R  P  A  C  Y  *  N  I  D  L  *  E  Y  L  I  S  Q  M  Y  L  L  S  S  N  Q  L  V  *  Y  E  S  K :   K  S  Q  I  L  K  K  S  R  Q  H  T  I  F  T  K  G  V  Y  R  *  R  G  S  S  *  K  K  L  S  V  E  G  T  I  R  L  Q  R  D  C  L  C  E  H  V  H  E  M  D  I  Y  S  S  L  Q  L  G  Q  A  S  C  A  S  L  E  F  Q  L  N  I  G  A  P  S  F  R  S  F  K  S  P  M  V  L  S  A  F  N  P  Q  P  A  R  C  K  V  I  A  N  Q  N  W  V  Q  L  Q  N  L  N  *  F  W  D  G  S  S  S  H  S  F  W  F  L  F  Q  R  E  L  N  S  *  I  Q  C  K  P  L  Y  M  C  C  V  D  S  L  K  P  K  T  K  L  E  P  V  G  A  L  A  C  C  Q  Y  *  H  L  E  R  N  I  G  L  L  S  S  R  E  V  F  S  C  *  P  W  S  L  E  V  D  F  L  *  *  L  P  K  Q  E  I  Q  *  *  S  K  E  N  E  M  L  *  Q  I  I  Q  F  F  T  E  S  H  N  H  V  Y  W  F  C  L  Y  L  M  I  A  Y  I  A  T  *  W  L  Y  F  S  V  C  *  :  K  K  K  I  N  L  T  :  K  L  I  T  S  R  L  E  K  K  N  Y  P  E  K  R  Y :   T  D  Q  M  S  K  F  I  V  H  G  *  *  L  E  L :   R  F  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28555" stop="28674"/>
                    <exon start="29596" stop="29805"/>
                    <exon start="29906" stop="29977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSVMQTDTTTDLAFATDIWSLGCTVIEMLNGRPPWSEYEAAAAMFKVLKDTPPIPETLSREGKDFLRCCFCRNPAERPSASMLLEHRFMRVSHQPDVSSFIKPVGVIRVKEKSNSQKEQTTYNLHQGRLSLER*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29691" stop="29805"/>
                    <exon start="29906" stop="30114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPSGKALGQHVIRTSIYESISSARCIFFHQTSWCNTSQRKVKFSKRADNIQSSPRAFIAREVALKKNCQWKGQLDCKETAYANTFMRWTFILLCNWDRPAVHHWSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28554" e_stop="28674"/>
            <exon e_start="29596" e_stop="29805"/>
            <exon e_start="29906" e_stop="30652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.986" e_score="0.983"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.967"/>
          <exon-only e_score="0.873"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="28554" e_stop="28674" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.986">
            <gDNA_intron_boundary i_start="28675" i_stop="29595" i_length="921"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="29596" e_stop="29805" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="29806" i_stop="29905" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.873">
            <gDNA_exon_boundary e_start="29906" e_stop="30652" e_length="747"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28554" stop="28674"/>
              <exon start="29596" stop="29805"/>
              <exon start="29906" stop="30368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30232" stop="30652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGTCAGTTATGCAGACGGATACTACCACTGATCTCGCCTTTGCCACTGATATATGGAGTTTGGGTTGTACAGTAATTGAAATGCTGAACGGCAGACCACCTTGGAGTGAATATGAAGCA : GCTGCAGCCATGTTCAAGGTTCTAAAAGATACGCCTCCAATACCGGAAACATTATCACGTGAAGGGAAAGATTTCTTGCGCTGTTGTTTCTGTAGGAACCCAGCGGAAAGGCCCTCGGCCAGCATGTTATTAGAACATCGATTTATGAGAGTATCTCATCAGCCAGATGTATCTTCTTTCATCAAACCAGTTGGTGTAATACGAGTCAAA : GAAAAGTCAAATTCTCAAAAAGAGCAGACAACATACAATCTTCACCAAGGGCGTTTATCGCTAGAGAGGTAGCTCTTAAAAAAAACTGTCAGTGGAAGGGACAATTAGATTGCAAAGAGACTGCTTATGCGAACACGTTCATGAGATGGACATTTATTCTTCTCTGCAATTGGGACAGGCCAGCTGTGCATCATTGGAGTTCCAACTAAATATCGGAGCCCCATCATTTCGCTCGTTCAAATCCCCTATGGTCCTGTCGGCATTTAATCCCCAGCCTGCTCGGTGTAAAGTCATTGCCAACCAAAACTGGGTGCAACTACAAAATCTCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTTGGTTTCTCTTTCAACGAGAGCTGAACTCGTGAATACAATGTAAACCTCTATATATGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCAGTAGGTGCTCTGGCTTGTTGTCAATATTAACACCTCGAGAGGAACATAGGTTTATTATCATCCAGGGAAGTTTTTTCCTGCTGACCTTGGAGTTTAGAAGTAGATTTTCTGTAATGACTTCCAAAGCAGGAGATTCAATAATAATCAAAAGAAAATGAAATGCTTTGACAAATTATACAATTCTTTACTGAATCTCACAATCATGTCTACTGGTTTTGTTTGTATCTCATGATTGCTTATATTGCAACTTAGTGGCTATATTTTTCAGTGTGTTAAATTTCATC</gDNA_template>
            <first_frame> A  V  S  Y  A  D  G  Y  Y  H  *  S  R  L  C  H  *  Y  M  E  F  G  L  Y  S  N  *  N  A  E  R  Q  T  T  L  E  *  I  *  S   : S  C  S  H  V  Q  G  S  K  R  Y  A  S  N  T  G  N  I  I  T  *  R  E  R  F  L  A  L  L  F  L  *  E  P  S  G  K  A  L  G  Q  H  V  I  R  T  S  I  Y  E  S  I  S  S  A  R  C  I  F  F  H  Q  T  S  W  C  N  T  S  Q   : R  K  V  K  F  S  K  R  A  D  N  I  Q  S  S  P  R  A  F  I  A  R  E  V  A  L  K  K  N  C  Q  W  K  G  Q  L  D  C  K  E  T  A  Y  A  N  T  F  M  R  W  T  F  I  L  L  C  N  W  D  R  P  A  V  H  H  W  S  S  N  *  I  S  E  P  H  H  F  A  R  S  N  P  L  W  S  C  R  H  L  I  P  S  L  L  G  V  K  S  L  P  T  K  T  G  C  N  Y  K  I  S  T  D  F  G  M  E  V  A  V  I  L  F  G  F  S  F  N  E  S  *  T  R  E  Y  N  V  N  L  Y  I  C  A  V  *  I  A  *  N  R  K  L  S  W  S  Q  *  V  L  W  L  V  V  N  I  N  T  S  R  G  T  *  V  Y  Y  H  P  G  K  F  F  P  A  D  L  G  V  *  K  *  I  F  C  N  D  F  Q  S  R  R  F  N  N  N  Q  K  K  M  K  C  F  D  K  L  Y  N  S  L  L  N  L  T  I  M  S  T  G  F  V  C  I  S  *  L  L  I  L  Q  L  S  G  Y  I  F  Q  C  V  K  F  H  </first_frame>
            <second_frame>  Q  S  V  M  Q  T  D  T  T  T  D  L  A  F  A  T  D  I  W  S  L  G  C  T  V  I  E  M  L  N  G  R  P  P  W  S  E  Y  E  A  :  A  A  A  M  F  K  V  L  K  D  T  P  P  I  P  E  T  L  S  R  E  G  K  D  F  L  R  C  C  F  C  R  N  P  A  E  R  P  S  A  S  M  L  L  E  H  R  F  M  R  V  S  H  Q  P  D  V  S  S  F  I  K  P  V  G  V  I  R  V  K  :  E  K  S  N  S  Q  K  E  Q  T  T  Y  N  L  H  Q  G  R  L  S  L  E  R  *  L  L  K  K  T  V  S  G  R  D  N  *  I  A  K  R  L  L  M  R  T  R  S  *  D  G  H  L  F  F  S  A  I  G  T  G  Q  L  C  I  I  G  V  P  T  K  Y  R  S  P  I  I  S  L  V  Q  I  P  Y  G  P  V  G  I  *  S  P  A  C  S  V  *  S  H  C  Q  P  K  L  G  A  T  T  K  S  Q  L  I  L  G  W  K  *  Q  S  F  F  L  V  S  L  S  T  R  A  E  L  V  N  T  M  *  T  S  I  Y  V  L  C  R  *  L  E  T  E  N  *  V  G  A  S  R  C  S  G  L  L  S  I  L  T  P  R  E  E  H  R  F  I  I  I  Q  G  S  F  F  L  L  T  L  E  F  R  S  R  F  S  V  M  T  S  K  A  G  D  S  I  I  I  K  R  K  *  N  A  L  T  N  Y  T  I  L  Y  *  I  S  Q  S  C  L  L  V  L  F  V  S  H  D  C  L  Y  C  N  L  V  A  I  F  F  S  V  L  N  F  I </second_frame>
            <third_frame>   S  Q  L  C  R  R  I  L  P  L  I  S  P  L  P  L  I  Y  G  V  W  V  V  Q  *  L  K  C  *  T  A  D  H  L  G  V  N  M  K  Q :   L  Q  P  C  S  R  F  *  K  I  R  L  Q  Y  R  K  H  Y  H  V  K  G  K  I  S  C  A  V  V  S  V  G  T  Q  R  K  G  P  R  P  A  C  Y  *  N  I  D  L  *  E  Y  L  I  S  Q  M  Y  L  L  S  S  N  Q  L  V  *  Y  E  S  K :   K  S  Q  I  L  K  K  S  R  Q  H  T  I  F  T  K  G  V  Y  R  *  R  G  S  S  *  K  K  L  S  V  E  G  T  I  R  L  Q  R  D  C  L  C  E  H  V  H  E  M  D  I  Y  S  S  L  Q  L  G  Q  A  S  C  A  S  L  E  F  Q  L  N  I  G  A  P  S  F  R  S  F  K  S  P  M  V  L  S  A  F  N  P  Q  P  A  R  C  K  V  I  A  N  Q  N  W  V  Q  L  Q  N  L  N  *  F  W  D  G  S  S  S  H  S  F  W  F  L  F  Q  R  E  L  N  S  *  I  Q  C  K  P  L  Y  M  C  C  V  D  S  L  K  P  K  T  K  L  E  P  V  G  A  L  A  C  C  Q  Y  *  H  L  E  R  N  I  G  L  L  S  S  R  E  V  F  S  C  *  P  W  S  L  E  V  D  F  L  *  *  L  P  K  Q  E  I  Q  *  *  S  K  E  N  E  M  L  *  Q  I  I  Q  F  F  T  E  S  H  N  H  V  Y  W  F  C  L  Y  L  M  I  A  Y  I  A  T  *  W  L  Y  F  S  V  C  *  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28555" stop="28674"/>
                    <exon start="29596" stop="29805"/>
                    <exon start="29906" stop="29977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSVMQTDTTTDLAFATDIWSLGCTVIEMLNGRPPWSEYEAAAAMFKVLKDTPPIPETLSREGKDFLRCCFCRNPAERPSASMLLEHRFMRVSHQPDVSSFIKPVGVIRVKEKSNSQKEQTTYNLHQGRLSLER*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29691" stop="29805"/>
                    <exon start="29906" stop="30114"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPSGKALGQHVIRTSIYESISSARCIFFHQTSWCNTSQRKVKFSKRADNIQSSPRAFIAREVALKKNCQWKGQLDCKETAYANTFMRWTFILLCNWDRPAVHHWSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="46840" PGL_stop="51083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46840" e_stop="46998"/>
            <exon e_start="47284" e_stop="47371"/>
            <exon e_start="47466" e_stop="47518"/>
            <exon e_start="48485" e_stop="48589"/>
            <exon e_start="49548" e_stop="49623"/>
            <exon e_start="50200" e_stop="50237"/>
            <exon e_start="50380" e_stop="50444"/>
            <exon e_start="50569" e_stop="50628"/>
            <exon e_start="50800" e_stop="50848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.962"/>
          <exon-intron don_prob="0.997" acc_prob="0.375" e_score="0.955"/>
          <exon-intron don_prob="0.942" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.998" e_score="0.981"/>
          <exon-intron don_prob="0.965" acc_prob="0.974" e_score="0.974"/>
          <exon-intron don_prob="0.923" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.738" acc_prob="0.742" e_score="0.985"/>
          <exon-intron don_prob="0.846" acc_prob="0.965" e_score="0.983"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="46840" e_stop="46998" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46999" i_stop="47283" i_length="285"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="47284" e_stop="47371" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.375">
            <gDNA_intron_boundary i_start="47372" i_stop="47465" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47466" e_stop="47518" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.979">
            <gDNA_intron_boundary i_start="47519" i_stop="48484" i_length="966"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="48485" e_stop="48589" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48590" i_stop="49547" i_length="958"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="49548" e_stop="49623" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.974">
            <gDNA_intron_boundary i_start="49624" i_stop="50199" i_length="576"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50200" e_stop="50237" e_length="38"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.993">
            <gDNA_intron_boundary i_start="50238" i_stop="50379" i_length="142"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="50380" e_stop="50444" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.738" acc_prob="0.742">
            <gDNA_intron_boundary i_start="50445" i_stop="50568" i_length="124"/>
          </intron>
          <exon e_serial="8" e_score="0.983">
            <gDNA_exon_boundary e_start="50569" e_stop="50628" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="0.846" acc_prob="0.965">
            <gDNA_intron_boundary i_start="50629" i_stop="50799" i_length="171"/>
          </intron>
          <exon e_serial="9" e_score="0.959">
            <gDNA_exon_boundary e_start="50800" e_stop="50848" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46840" stop="46998"/>
              <exon start="47284" stop="47371"/>
              <exon start="47466" stop="47518"/>
              <exon start="48485" stop="48589"/>
              <exon start="49548" stop="49623"/>
              <exon start="50200" stop="50237"/>
              <exon start="50380" stop="50444"/>
              <exon start="50569" stop="50628"/>
              <exon start="50800" stop="50848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATTCCAGAGGGTGCAGATGATGGCACAATTAACTTCTTTAAAGATGGTGATACTTACCCTGATTGGCCAATAGACCTTGACGTGAAACCAGATGAGGTTGCTTGGTGGATAAATGTTGTTGAACGTATCAAAGCCTTTGGCAATGAACATTTCAAG : AAGGAAGACTATAAGATGGCTATCAGGAAGTACAGGAAGGCTGTCCGTTATACCGACTTATGCTGGGAAAAGGACGACATTGATGAAG : TAAAAAGCGAGTATTTGAGGAAGACAAAGTCCCAGATACTTGCAAATAGTTCT : GCCTGTAAACTGAAGATAGGAGATCTAACTGGAGCATTGATAGATGCGAATGATGCAATTTATGATGGAGAAGACAATGTCAAAGCTTTTTACCGCCAAGGCCAG : GTATATATGGCAATGAATGCTATAGATGCAGCAGCTGAAAGTTTTAAGAAGGCCCTGGAGTTAGAGCCAAACAATG : GGGGGATAAAGAAGGAGCTGGCTGCTGCAATGAAGAAG : ATTGCTTATAAACTAGAGAAGGAGAAGAAGGGTTATGCTAAAATGTTTCAGTAAAATTTCCAGTG : TTCACAATAGAAGTATAGTGGTTCAGGTTAACTTTTGGGCCTCAAAACAGCTAGAATCAG : GATTTGTTACTCATGGAGTACAAAAACGAAGGGTTTGTTCTCAACTTCT</gDNA_template>
            <first_frame> E  I  P  E  G  A  D  D  G  T  I  N  F  F  K  D  G  D  T  Y  P  D  W  P  I  D  L  D  V  K  P  D  E  V  A  W  W  I  N  V  V  E  R  I  K  A  F  G  N  E  H  F  K  :  K  E  D  Y  K  M  A  I  R  K  Y  R  K  A  V  R  Y  T  D  L  C  W  E  K  D  D  I  D  E   : V  K  S  E  Y  L  R  K  T  K  S  Q  I  L  A  N  S  S  :  A  C  K  L  K  I  G  D  L  T  G  A  L  I  D  A  N  D  A  I  Y  D  G  E  D  N  V  K  A  F  Y  R  Q  G  Q  :  V  Y  M  A  M  N  A  I  D  A  A  A  E  S  F  K  K  A  L  E  L  E  P  N  N   : G  G  I  K  K  E  L  A  A  A  M  K  K  :  I  A  Y  K  L  E  K  E  K  K  G  Y  A  K  M  F  Q  *  N  F  Q  C :   S  Q  *  K  Y  S  G  S  G  *  L  L  G  L  K  T  A  R  I  R :   I  C  Y  S  W  S  T  K  T  K  G  L  F  S  T  S </first_frame>
            <second_frame>  K  F  Q  R  V  Q  M  M  A  Q  L  T  S  L  K  M  V  I  L  T  L  I  G  Q  *  T  L  T  *  N  Q  M  R  L  L  G  G  *  M  L  L  N  V  S  K  P  L  A  M  N  I  S  R :   R  K  T  I  R  W  L  S  G  S  T  G  R  L  S  V  I  P  T  Y  A  G  K  R  T  T  L  M  K  :  *  K  A  S  I  *  G  R  Q  S  P  R  Y  L  Q  I  V  L :   P  V  N  *  R  *  E  I  *  L  E  H  *  *  M  R  M  M  Q  F  M  M  E  K  T  M  S  K  L  F  T  A  K  A  R :   Y  I  W  Q  *  M  L  *  M  Q  Q  L  K  V  L  R  R  P  W  S  *  S  Q  T  M  :  G  G  *  R  R  S  W  L  L  Q  *  R  R :   L  L  I  N  *  R  R  R  R  R  V  M  L  K  C  F  S  K  I  S  S   : V  H  N  R  S  I  V  V  Q  V  N  F  W  A  S  K  Q  L  E  S   : G  F  V  T  H  G  V  Q  K  R  R  V  C  S  Q  L   </second_frame>
            <third_frame>   N  S  R  G  C  R  *  W  H  N  *  L  L  *  R  W  *  Y  L  P  *  L  A  N  R  P  *  R  E  T  R  *  G  C  L  V  D  K  C  C  *  T  Y  Q  S  L  W  Q  *  T  F  Q   : E  G  R  L  *  D  G  Y  Q  E  V  Q  E  G  C  P  L  Y  R  L  M  L  G  K  G  R  H  *  *  S :   K  K  R  V  F  E  E  D  K  V  P  D  T  C  K  *  F   : C  L  *  T  E  D  R  R  S  N  W  S  I  D  R  C  E  *  C  N  L  *  W  R  R  Q  C  Q  S  F  L  P  P  R  P   : G  I  Y  G  N  E  C  Y  R  C  S  S  *  K  F  *  E  G  P  G  V  R  A  K  Q  W :   G  D  K  E  G  A  G  C  C  N  E  E   : D  C  L  *  T  R  E  G  E  E  G  L  C  *  N  V  S  V  K  F  P  V  :  F  T  I  E  V  *  W  F  R  L  T  F  G  P  Q  N  S  *  N  Q  :  D  L  L  L  M  E  Y  K  N  E  G  F  V  L  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46840" stop="46998"/>
                    <exon start="47284" stop="47371"/>
                    <exon start="47466" stop="47518"/>
                    <exon start="48485" stop="48589"/>
                    <exon start="49548" stop="49623"/>
                    <exon start="50200" stop="50237"/>
                    <exon start="50380" stop="50433"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIPEGADDGTINFFKDGDTYPDWPIDLDVKPDEVAWWINVVERIKAFGNEHFKKEDYKMAIRKYRKAVRYTDLCWEKDDIDEVKSEYLRKTKSQILANSSACKLKIGDLTGALIDANDAIYDGEDNVKAFYRQGQVYMAMNAIDAAAESFKKALELEPNNGGIKKELAAAMKKIAYKLEKEKKGYAKMFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47295" e_stop="47371"/>
            <exon e_start="47466" e_stop="47518"/>
            <exon e_start="48485" e_stop="48589"/>
            <exon e_start="49548" e_stop="49565"/>
            <exon e_start="50892" e_stop="51083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.375" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.979" e_score="0.962"/>
          <exon-intron don_prob="0.915" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47295" e_stop="47371" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.375">
            <gDNA_intron_boundary i_start="47372" i_stop="47465" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="47466" e_stop="47518" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.979">
            <gDNA_intron_boundary i_start="47519" i_stop="48484" i_length="966"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48485" e_stop="48589" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48590" i_stop="49547" i_length="958"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="49548" e_stop="49565" e_length="18"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49566" i_stop="50891" i_length="1326"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="50892" e_stop="51083" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47295" stop="47371"/>
              <exon start="47466" stop="47518"/>
              <exon start="48485" stop="48589"/>
              <exon start="49548" stop="49565"/>
              <exon start="50892" stop="51083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGATGGCTATCAGGAAGTACAGGAAGGCTGTCCGTTATACCGACTTATGCTGGGAAAAGGACGACATTGATGAAG : TAAAAAGCGAGTATTTGAGGAAGACAAAGTCCCAGATACTTGCAAATAGTTCT : GCCTGTAAACTGAAGATAGGAGATCTAACTGGAGCATTGATAGATGCGAATGATGCAATTTATGATGGAGAAGACAATGTCAAAGCTTTTTACCGCCAAGGCCAG : GTATATATGGCAATGAAT : ATTTCTCACTTGACTTTAATTCTGCTTATTAGTGGGCATTCTTCTGTTGAATACAAAATATATAGCCTGAATATACCTCAACGTGTTTTGTACAGAAAGTGAAAGGGAACTTAATGCAGGATAAAGTGTCTTTCCATTTATAATATAATGATATGGATGCCCCAAACTCGGTTATCTATGGCTTCCGCAAAA</gDNA_template>
            <first_frame> *  D  G  Y  Q  E  V  Q  E  G  C  P  L  Y  R  L  M  L  G  K  G  R  H  *  *  S :   K  K  R  V  F  E  E  D  K  V  P  D  T  C  K  *  F   : C  L  *  T  E  D  R  R  S  N  W  S  I  D  R  C  E  *  C  N  L  *  W  R  R  Q  C  Q  S  F  L  P  P  R  P   : G  I  Y  G  N  E   : Y  F  S  L  D  F  N  S  A  Y  *  W  A  F  F  C  *  I  Q  N  I  *  P  E  Y  T  S  T  C  F  V  Q  K  V  K  G  N  L  M  Q  D  K  V  S  F  H  L  *  Y  N  D  M  D  A  P  N  S  V  I  Y  G  F  R  K  </first_frame>
            <second_frame>  K  M  A  I  R  K  Y  R  K  A  V  R  Y  T  D  L  C  W  E  K  D  D  I  D  E   : V  K  S  E  Y  L  R  K  T  K  S  Q  I  L  A  N  S  S  :  A  C  K  L  K  I  G  D  L  T  G  A  L  I  D  A  N  D  A  I  Y  D  G  E  D  N  V  K  A  F  Y  R  Q  G  Q  :  V  Y  M  A  M  N  :  I  S  H  L  T  L  I  L  L  I  S  G  H  S  S  V  E  Y  K  I  Y  S  L  N  I  P  Q  R  V  L  Y  R  K  *  K  G  T  *  C  R  I  K  C  L  S  I  Y  N  I  M  I  W  M  P  Q  T  R  L  S  M  A  S  A  K </second_frame>
            <third_frame>   R  W  L  S  G  S  T  G  R  L  S  V  I  P  T  Y  A  G  K  R  T  T  L  M  K  :  *  K  A  S  I  *  G  R  Q  S  P  R  Y  L  Q  I  V  L :   P  V  N  *  R  *  E  I  *  L  E  H  *  *  M  R  M  M  Q  F  M  M  E  K  T  M  S  K  L  F  T  A  K  A  R :   Y  I  W  Q  *  I :   F  L  T  *  L  *  F  C  L  L  V  G  I  L  L  L  N  T  K  Y  I  A  *  I  Y  L  N  V  F  C  T  E  S  E  R  E  L  N  A  G  *  S  V  F  P  F  I  I  *  *  Y  G  C  P  K  L  G  Y  L  W  L  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47296" stop="47371"/>
                    <exon start="47466" stop="47518"/>
                    <exon start="48485" stop="48589"/>
                    <exon start="49548" stop="49565"/>
                    <exon start="50892" stop="50993"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAIRKYRKAVRYTDLCWEKDDIDEVKSEYLRKTKSQILANSSACKLKIGDLTGALIDANDAIYDGEDNVKAFYRQGQVYMAMNISHLTLILLISGHSSVEYKIYSLNIPQRVLYRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="53471" PGL_stop="51312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53471" e_stop="53196"/>
            <exon e_start="52919" e_stop="52738"/>
            <exon e_start="52627" e_stop="52444"/>
            <exon e_start="52348" e_stop="52187"/>
            <exon e_start="52096" e_stop="51794"/>
            <exon e_start="51707" e_stop="51312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.995" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53471" e_stop="53196" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53195" i_stop="52920" i_length="276"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52919" e_stop="52738" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.979">
            <gDNA_intron_boundary i_start="52737" i_stop="52628" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="52627" e_stop="52444" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52443" i_stop="52349" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52348" e_stop="52187" e_length="162"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.814">
            <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52096" e_stop="51794" e_length="303"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51793" i_stop="51708" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51707" e_stop="51312" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53471" stop="53196"/>
              <exon start="52919" stop="52738"/>
              <exon start="52627" stop="52457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53458" stop="53196"/>
              <exon start="52919" stop="52738"/>
              <exon start="52627" stop="52617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53420" stop="53196"/>
              <exon start="52919" stop="52738"/>
              <exon start="52627" stop="52522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53367" stop="53196"/>
              <exon start="52919" stop="52738"/>
              <exon start="52627" stop="52490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53345" stop="53196"/>
              <exon start="52919" stop="52771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52570" stop="52444"/>
              <exon start="52348" stop="52187"/>
              <exon start="52096" stop="51845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52570" stop="52444"/>
              <exon start="52348" stop="52187"/>
              <exon start="52096" stop="51847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52570" stop="52444"/>
              <exon start="52348" stop="52187"/>
              <exon start="52096" stop="51948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52503" stop="52444"/>
              <exon start="52348" stop="52187"/>
              <exon start="52096" stop="51803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52346" stop="52187"/>
              <exon start="52096" stop="51794"/>
              <exon start="51707" stop="51684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52276" stop="52187"/>
              <exon start="52096" stop="51794"/>
              <exon start="51707" stop="51395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52276" stop="52187"/>
              <exon start="52096" stop="51794"/>
              <exon start="51707" stop="51514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52275" stop="52187"/>
              <exon start="52096" stop="51922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52247" stop="52187"/>
              <exon start="52096" stop="51794"/>
              <exon start="51707" stop="51336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52241" stop="52187"/>
              <exon start="52096" stop="51794"/>
              <exon start="51707" stop="51336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405406" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52197" stop="52187"/>
              <exon start="52096" stop="51794"/>
              <exon start="51707" stop="51312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51980" stop="51794"/>
              <exon start="51707" stop="51321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436676" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTTTAACATAACAATACACACTTTTCTCCCCTTCTCTTTCAAATATCAAAAACACAAAACTCTTTTTTGTTAGGTAATAACTCAACATGGGGAGGATGGTTCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAG : GAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAG : GCGTAACAGCTTTGTGAGAAGGATCACAAATTTGTTTGGAGGACCAAAGTATGATGGCATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGAT : GCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA : ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAG : GATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAACTAGTAAACCATGTTGTAATATGAGAATAAACATCCCAAGAAGAAAATAAAATTTATGTAATACTTCTGTTTTTTTTTCTCATG</gDNA_template>
            <first_frame> F  L  L  T  *  Q  Y  T  L  F  S  P  S  L  S  N  I  K  N  T  K  L  F  F  V  R  *  *  L  N  M  G  R  M  V  L  I  A  A  A  M  T  L  F  V  T  L  Q  V  L  Q  P  P  L  V  V  S  A  A  T  K  G  K  T  V  T  V  L  S  I  D  G  G  G  I  R  G  I  I  P  G  T  L  L  A  F  L  E  S  K  L  Q  :  E  L  D  G  P  N  A  R  I  A  D  Y  F  D  V  V  A  G  T  S  T  G  G  L  V  T  T  M  L  T  A  P  N  K  D  N  R  P  L  Y  Q  A  K  D  I  S  N  F  Y  M  Q  H  G  P  Q  I  F  P  Q  S  R :   R  N  S  F  V  R  R  I  T  N  L  F  G  G  P  K  Y  D  G  I  Y  L  R  T  I  I  N  S  I  L  G  N  L  T  M  K  Q  T  L  T  N  T  V  I  P  T  F  D  I  K  R  L  Q  P  I  I  F  S  T  A  D  :  A  K  A  N  I  S  K  N  A  Q  L  S  D  V  C  L  S  T  S  A  A  P  T  Y  F  P  V  H  S  F  E  T  K  D  A  Q  G  K  T  R  T  F  D  L  V  D  G  G  V  A  A  N  N  P  :  T  L  M  A  I  T  Y  V  S  K  Q  I  M  T  G  N  F  Q  Y  E  G  M  K  N  M  D  C  N  K  M  L  V  L  S  L  G  T  G  I  G  K  Q  E  E  K  Y  N  A  T  V  A  S  R  W  G  M  V  G  W  V  Y  N  N  G  A  T  P  L  I  D  I  Y  G  D  A  S  A  D  M  V  D  I  H  T  S  T  M  F  Q  T  L  G  S  E  K  N  Y  I  R  I  Q  :  D  D  N  L  T  G  E  A  A  S  M  D  I  A  T  T  Q  N  M  E  T  L  V  Q  I  G  N  D  L  L  K  K  P  I  S  R  V  N  L  E  T  G  R  Y  E  P  V  V  G  E  G  T  N  E  A  A  I  V  R  F  A  Q  L  L  S  E  E  R  K  L  R  I  N  *  R  N  T  C  R  N  F  T  H  N  L  L  D  D  *  K  I  N  L  Y  S  F  T  L  Q  *  L  S  A  *  L  V  N  H  V  V  I  *  E  *  T  S  Q  E  E  N  K  I  Y  V  I  L  L  F  F  F  L  M </first_frame>
            <second_frame>  F  F  *  H  N  N  T  H  F  S  P  L  L  F  Q  I  S  K  T  Q  N  S  F  L  L  G  N  N  S  T  W  G  G  W  F  L  *  L  Q  Q  *  L  F  L  *  P  F  K  F  Y  N  L  H  *  *  F  L  P  P  P  K  E  R  R  *  P  F  *  V  S  M  E  V  V  L  E  A  L  F  L  E  P  Y  L  P  S  L  N  L  N  F  R :   N  L  M  D  Q  M  Q  E  L  Q  I  T  S  M  *  *  Q  E  Q  A  Q  V  D  *  *  Q  L  C  L  L  L  L  T  R  I  I  V  L  Y  I  K  Q  K  I  F  P  I  S  T  C  N  M  A  L  K  F  F  L  K  A   : G  V  T  A  L  *  E  G  S  Q  I  C  L  E  D  Q  S  M  M  A  Y  T  *  E  Q  L  L  I  Q  Y  *  A  I  L  Q  *  S  K  R  *  L  I  Q  S  Y  L  L  L  I  S  N  V  F  N  Q  *  S  S  V  L  L  M :   Q  K  Q  I  S  Q  R  M  L  N  Y  Q  T  F  A  L  V  P  Q  P  H  P  L  I  S  Q  C  T  V  L  R  L  R  M  L  K  A  K  R  V  H  L  I  L  S  M  E  V  *  L  Q  I  I  Q :   P  *  W  Q  *  H  T  F  Q  N  K  S  *  R  A  T  F  N  T  R  V  *  R  I  W  T  A  T  K  C  W  F  C  R  W  A  R  V  *  A  S  K  K  R  S  I  M  L  Q  W  L  P  D  G  G  W  *  V  G  C  T  T  M  V  P  P  L  *  *  I  F  M  V  M  L  V  L  I  W  *  T  Y  I  L  P  P  C  F  R  P  L  V  V  R  R  T  T  S  G  F  R :   M  T  I  *  Q  G  R  L  H  L  W  I  L  Q  R  H  K  T  W  R  H  W  Y  K  L  V  M  I  Y  *  R  S  Q  F  Q  G  S  T  *  K  Q  A  D  T  N  Q  L  L  G  K  A  P  T  K  L  L  *  S  A  S  L  S  C  F  Q  R  K  G  S  S  E  *  T  N  E  I  L  A  E  I  L  H  T  I  C  W  T  I  R  R  L  I  C  I  L  L  P  F  N  S  *  A  P  N  *  *  T  M  L  *  Y  E  N  K  H  P  K  K  K  I  K  F  M  *  Y  F  C  F  F  F  S   </second_frame>
            <third_frame>   S  F  N  I  T  I  H  T  F  L  P  F  S  F  K  Y  Q  K  H  K  T  L  F  C  *  V  I  T  Q  H  G  E  D  G  S  Y  S  C  S  N  D  S  F  C  N  P  S  S  F  T  T  S  I  S  S  F  C  R  H  Q  R  K  D  G  N  R  F  E  Y  R  W  R  W  Y  *  R  H  Y  S  W  N  P  T  C  L  P  *  I  *  T  S   : G  T  *  W  T  K  C  K  N  C  R  L  L  R  C  S  S  R  N  K  H  R  W  I  S  N  N  Y  A  Y  C  S  *  Q  G  *  S  S  F  I  S  S  K  R  Y  F  Q  F  L  H  A  T  W  P  S  N  F  S  S  K  Q  :  A  *  Q  L  C  E  K  D  H  K  F  V  W  R  T  K  V  *  W  H  I  L  E  N  N  Y  *  F  N  I  R  Q  S  Y  N  E  A  N  V  D  *  Y  S  H  T  Y  F  *  Y  Q  T  S  S  T  N  N  L  Q  Y  C  *   : C  K  S  K  Y  L  K  E  C  S  I  I  R  R  L  P  *  Y  L  S  R  T  H  L  F  P  S  A  Q  F  *  D  *  G  C  S  R  Q  N  A  Y  I  *  S  C  R  W  R  C  S  C  K  *  S   : N  L  N  G  N  N  I  R  F  K  T  N  H  D  G  Q  L  S  I  R  G  Y  E  E  Y  G  L  Q  Q  N  V  G  S  V  V  G  H  G  Y  R  Q  A  R  R  E  V  *  C  Y  S  G  F  Q  M  G  D  G  R  L  G  V  Q  Q  W  C  H  P  F  D  R  Y  L  W  *  C  *  C  *  Y  G  R  H  T  Y  F  H  H  V  S  D  P  W  *  *  E  E  L  H  Q  D  S   : G  *  Q  F  D  R  G  G  C  I  Y  G  Y  C  N  D  T  K  H  G  D  T  G  T  N  W  *  *  S  I  E  E  A  N  F  K  G  Q  L  R  N  R  P  I  R  T  S  C  W  G  R  H  Q  R  S  C  Y  S  P  L  R  S  V  A  F  R  G  K  E  A  P  N  K  L  T  K  Y  L  Q  K  F  Y  T  Q  F  V  G  R  L  E  D  *  F  V  F  F  Y  P  S  I  V  K  R  L  T  S  K  P  C  C  N  M  R  I  N  I  P  R  R  K  *  N  L  C  N  T  S  V  F  F  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53387" stop="53196"/>
                    <exon start="52919" stop="52738"/>
                    <exon start="52627" stop="52444"/>
                    <exon start="52348" stop="52187"/>
                    <exon start="52096" stop="51794"/>
                    <exon start="51707" stop="51486"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNMGRMVLIAAAMTLFVTLQVLQPPLVVSAATKGKTVTVLSIDGGGIRGIIPGTLLAFLESKLQELDGPNARIADYFDVVAGTSTGGLVTTMLTAPNKDNRPLYQAKDISNFYMQHGPQIFPQSRRNSFVRRITNLFGGPKYDGIYLRTIINSILGNLTMKQTLTNTVIPTFDIKRLQPIIFSTADAKANISKNAQLSDVCLSTSAAPTYFPVHSFETKDAQGKTRTFDLVDGGVAANNPTLMAITYVSKQIMTGNFQYEGMKNMDCNKMLVLSLGTGIGKQEEKYNATVASRWGMVGWVYNNGATPLIDIYGDASADMVDIHTSTMFQTLGSEKNYIRIQDDNLTGEAASMDIATTQNMETLVQIGNDLLKKPISRVNLETGRYEPVVGEGTNEAAIVRFAQLLSEERKLRIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53145" e_stop="52750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="53145" e_stop="52750" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53145" stop="52750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTGACTATACGCGCTGATCAGTACAAGTAAAAAGAAAGATATTCGCCATATATACTTGGAACTTATTATTTTAAGCATGTTATGACATTTCTATGACTATATATAACAGGAAAAATTAAATATCTAACTGTTGGATTAAAAAGGAAAATGTGTCGTATAAACTGAAACAGAAGAAATACTCGTAGATTACTTTTTTTCTCATGAATTTATTTGTGTATGCTAGGAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTT</gDNA_template>
            <first_frame> Y  L  T  I  R  A  D  Q  Y  K  *  K  E  R  Y  S  P  Y  I  L  G  T  Y  Y  F  K  H  V  M  T  F  L  *  L  Y  I  T  G  K  I  K  Y  L  T  V  G  L  K  R  K  M  C  R  I  N  *  N  R  R  N  T  R  R  L  L  F  F  S  *  I  Y  L  C  M  L  G  T  *  W  T  K  C  K  N  C  R  L  L  R  C  S  S  R  N  K  H  R  W  I  S  N  N  Y  A  Y  C  S  *  Q  G  *  S  S  F  I  S  S  K  R  Y  F  Q  F  L  H  A  T  W  P  S  N  F </first_frame>
            <second_frame>  I  *  L  Y  A  L  I  S  T  S  K  K  K  D  I  R  H  I  Y  L  E  L  I  I  L  S  M  L  *  H  F  Y  D  Y  I  *  Q  E  K  L  N  I  *  L  L  D  *  K  G  K  C  V  V  *  T  E  T  E  E  I  L  V  D  Y  F  F  S  H  E  F  I  C  V  C  *  E  L  D  G  P  N  A  R  I  A  D  Y  F  D  V  V  A  G  T  S  T  G  G  L  V  T  T  M  L  T  A  P  N  K  D  N  R  P  L  Y  Q  A  K  D  I  S  N  F  Y  M  Q  H  G  P  Q  I   </second_frame>
            <third_frame>   F  D  Y  T  R  *  S  V  Q  V  K  R  K  I  F  A  I  Y  T  W  N  L  L  F  *  A  C  Y  D  I  S  M  T  I  Y  N  R  K  N  *  I  S  N  C  W  I  K  K  E  N  V  S  Y  K  L  K  Q  K  K  Y  S  *  I  T  F  F  L  M  N  L  F  V  Y  A  R  N  L  M  D  Q  M  Q  E  L  Q  I  T  S  M  *  *  Q  E  Q  A  Q  V  D  *  *  Q  L  C  L  L  L  L  T  R  I  I  V  L  Y  I  K  Q  K  I  F  P  I  S  T  C  N  M  A  L  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="72755" PGL_stop="76672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72755" e_stop="73335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="72755" e_stop="73335" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72755" stop="73335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTTGGAGCTTTAATGGTGAATGCGTTCCAGAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGGGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGGGTAAATTCTTCTTCTTCTTCTTGAATATTTTCTTTGTCAATCTGCTTATACGTAGTTGTTTTTCCTTCTTGGTTTTCTTTCAAGTGTTTGATGCGAAAGATGGGTATGAAATTATCATTGCTTCCCGCGGTTCAGGGTACTGGTTCTTGAACAATTGAACCAGCACTCTTGAACAATTAAACCAACATCAACGGGTTCTTGAACAATTGAAGCAAGACCAACTGGTTTCTGAACAATTGAACCAACACCAACCGGTTCCAACTGGTTCTTGATTGAAAAGTAGTTTCTTGATTTGTATGTTTGGGAACCATTGACAATTTTGGGTGTTTTTGTTGACTTCACTAGCTTCTTTGGATATCATTCCTTAAGGAGTCGAGGATAAAGTAAAGCATCAATCCAATGGACAATATTTTCTACT</gDNA_template>
            <first_frame> N  V  G  A  L  M  V  N  A  F  Q  K  L  E  E  R  M  Y  G  V  L  C  N  S  E  K  S  S  T  K  A  A  V  D  A  F  A  G  M  G  V  Q  V  T  V  E  D  F  V  P  F  M  G  M  G  K  F  F  F  F  F  L  N  I  F  F  V  N  L  L  I  R  S  C  F  S  F  L  V  F  F  Q  V  F  D  A  K  D  G  Y  E  I  I  I  A  S  R  G  S  G  Y  W  F  L  N  N  *  T  S  T  L  E  Q  L  N  Q  H  Q  R  V  L  E  Q  L  K  Q  D  Q  L  V  S  E  Q  L  N  Q  H  Q  P  V  P  T  G  S  *  L  K  S  S  F  L  I  C  M  F  G  N  H  *  Q  F  W  V  F  L  L  T  S  L  A  S  L  D  I  I  P  *  G  V  E  D  K  V  K  H  Q  S  N  G  Q  Y  F  L   </first_frame>
            <second_frame>  M  L  E  L  *  W  *  M  R  S  R  N  W  K  R  E  C  T  V  C  F  A  I  V  R  N  H  Q  Q  K  R  L  W  M  L  L  L  G  W  V  F  K  L  P  L  K  I  L  C  L  S  W  A  W  V  N  S  S  S  S  S  *  I  F  S  L  S  I  C  L  Y  V  V  V  F  P  S  W  F  S  F  K  C  L  M  R  K  M  G  M  K  L  S  L  L  P  A  V  Q  G  T  G  S  *  T  I  E  P  A  L  L  N  N  *  T  N  I  N  G  F  L  N  N  *  S  K  T  N  W  F  L  N  N  *  T  N  T  N  R  F  Q  L  V  L  D  *  K  V  V  S  *  F  V  C  L  G  T  I  D  N  F  G  C  F  C  *  L  H  *  L  L  W  I  S  F  L  K  E  S  R  I  K  *  S  I  N  P  M  D  N  I  F  Y  </second_frame>
            <third_frame>   C  W  S  F  N  G  E  C  V  P  E  I  G  R  E  N  V  R  C  A  L  Q  *  *  E  I  I  N  K  S  G  C  G  C  F  C  W  D  G  C  S  S  Y  R  *  R  F  C  A  F  H  G  H  G  *  I  L  L  L  L  L  E  Y  F  L  C  Q  S  A  Y  T  *  L  F  F  L  L  G  F  L  S  S  V  *  C  E  R  W  V  *  N  Y  H  C  F  P  R  F  R  V  L  V  L  E  Q  L  N  Q  H  S  *  T  I  K  P  T  S  T  G  S  *  T  I  E  A  R  P  T  G  F  *  T  I  E  P  T  P  T  G  S  N  W  F  L  I  E  K  *  F  L  D  L  Y  V  W  E  P  L  T  I  L  G  V  F  V  D  F  T  S  F  F  G  Y  H  S  L  R  S  R  G  *  S  K  A  S  I  Q  W  T  I  F  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72755" stop="73075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVGALMVNAFQKLEERMYGVLCNSEKSSTKAAVDAFAGMGVQVTVEDFVPFMGMGKFFFFFLNIFFVNLLIRSCFSFLVFFQVFDAKDGYEIIIASRGSGYWFLNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74438" e_stop="74452"/>
            <exon e_start="74599" e_stop="74654"/>
            <exon e_start="74747" e_stop="74840"/>
            <exon e_start="75573" e_stop="75673"/>
            <exon e_start="76133" e_stop="76191"/>
            <exon e_start="76413" e_stop="76672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.476" e_score="0.933"/>
          <exon-intron don_prob="1.000" acc_prob="0.592" e_score="0.875"/>
          <exon-intron don_prob="0.346" acc_prob="1.000" e_score="0.926"/>
          <exon-intron don_prob="0.276" acc_prob="0.000" e_score="0.931"/>
          <exon-intron don_prob="0.973" acc_prob="0.000" e_score="0.915"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="74438" e_stop="74452" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.476">
            <gDNA_intron_boundary i_start="74453" i_stop="74598" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="0.875">
            <gDNA_exon_boundary e_start="74599" e_stop="74654" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.592">
            <gDNA_intron_boundary i_start="74655" i_stop="74746" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.926">
            <gDNA_exon_boundary e_start="74747" e_stop="74840" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.346" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74841" i_stop="75572" i_length="732"/>
          </intron>
          <exon e_serial="4" e_score="0.931">
            <gDNA_exon_boundary e_start="75573" e_stop="75673" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.276" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75674" i_stop="76132" i_length="459"/>
          </intron>
          <exon e_serial="5" e_score="0.915">
            <gDNA_exon_boundary e_start="76133" e_stop="76191" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.973" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76192" i_stop="76412" i_length="221"/>
          </intron>
          <exon e_serial="6" e_score="0.900">
            <gDNA_exon_boundary e_start="76413" e_stop="76672" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74438" stop="74452"/>
              <exon start="74599" stop="74654"/>
              <exon start="74747" stop="74840"/>
              <exon start="75573" stop="75673"/>
              <exon start="76133" stop="76191"/>
              <exon start="76413" stop="76672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285068" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATTTATTAAAG : TATGCAGACCGAATTATGGCATAGGTGTCCCTGGTGCCTTTGAACTTTTCTCTCAG : TGTAAAAGCAGCGGTCTCAAAGTTGCTGTTGCATCTAGTGCTTACCGAATTAAAGTTGATGCAAAGTGGCTGCAGCCGGTTTACCAATAATGAT : GTTTTGATGCAATTGTATCTGCTGATGCCTTAAAAAGTTTGAAGCCTGCTCCTGATATTTTCTTGGCTGCATCACGGATTCTTGATATTCCCAATAGTGAG : TGTGTTGTGATTGAAGATAAATTAGCTGGAGTACAAGCTGCCAAAGCTGCGAAAATGAG : ATGTATAGCTGTGACGACAACACTATCAGAAGATACTCTAAAAACAGCGGAGCCCACACTTATCAGAAAGGAGATAAGCGATATTTCACTTGAAAATATCCTCGATGGTGGCTCTGGTAGCCATAGTATGTAGTGCACCAACATGTTAAGAACTTCCCTTTTCGTGTACCATTGACAAATGCAGAATACTGAAGCTCTTTTGTGTTATTTATGGAAAAACATGCGAGTAAGCTCTTTTTTGTAATGACTATAACTTGTTG</gDNA_template>
            <first_frame> I  Y  L  L  K  :  Y  A  D  R  I  M  A  *  V  S  L  V  P  L  N  F  S  L  S :   V  K  A  A  V  S  K  L  L  L  H  L  V  L  T  E  L  K  L  M  Q  S  G  C  S  R  F  T  N  N  D  :  V  L  M  Q  L  Y  L  L  M  P  *  K  V  *  S  L  L  L  I  F  S  W  L  H  H  G  F  L  I  F  P  I  V  S :   V  L  *  L  K  I  N  *  L  E  Y  K  L  P  K  L  R  K  *   : D  V  *  L  *  R  Q  H  Y  Q  K  I  L  *  K  Q  R  S  P  H  L  S  E  R  R  *  A  I  F  H  L  K  I  S  S  M  V  A  L  V  A  I  V  C  S  A  P  T  C  *  E  L  P  F  S  C  T  I  D  K  C  R  I  L  K  L  F  C  V  I  Y  G  K  T  C  E  *  A  L  F  C  N  D  Y  N  L  L </first_frame>
            <second_frame>  Y  I  Y  *  S :   M  Q  T  E  L  W  H  R  C  P  W  C  L  *  T  F  L  S   : V  *  K  Q  R  S  Q  S  C  C  C  I  *  C  L  P  N  *  S  *  C  K  V  A  A  A  G  L  P  I  M  M :   F  *  C  N  C  I  C  *  C  L  K  K  F  E  A  C  S  *  Y  F  L  G  C  I  T  D  S  *  Y  S  Q  *  *   : V  C  C  D  *  R  *  I  S  W  S  T  S  C  Q  S  C  E  N  E  :  M  Y  S  C  D  D  N  T  I  R  R  Y  S  K  N  S  G  A  H  T  Y  Q  K  G  D  K  R  Y  F  T  *  K  Y  P  R  W  W  L  W  *  P  *  Y  V  V  H  Q  H  V  K  N  F  P  F  R  V  P  L  T  N  A  E  Y  *  S  S  F  V  L  F  M  E  K  H  A  S  K  L  F  F  V  M  T  I  T  C   </second_frame>
            <third_frame>   I  F  I  K   : V  C  R  P  N  Y  G  I  G  V  P  G  A  F  E  L  F  S  Q  :  C  K  S  S  G  L  K  V  A  V  A  S  S  A  Y  R  I  K  V  D  A  K  W  L  Q  P  V  Y  Q  *  *   : C  F  D  A  I  V  S  A  D  A  L  K  S  L  K  P  A  P  D  I  F  L  A  A  S  R  I  L  D  I  P  N  S  E  :  C  V  V  I  E  D  K  L  A  G  V  Q  A  A  K  A  A  K  M  R :   C  I  A  V  T  T  T  L  S  E  D  T  L  K  T  A  E  P  T  L  I  R  K  E  I  S  D  I  S  L  E  N  I  L  D  G  G  S  G  S  H  S  M  *  C  T  N  M  L  R  T  S  L  F  V  Y  H  *  Q  M  Q  N  T  E  A  L  L  C  Y  L  W  K  N  M  R  V  S  S  F  L  *  *  L  *  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74840" stop="75673"/>
                    <exon start="76133" stop="76191"/>
                    <exon start="76413" stop="76545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFDAIVSADALKSLKPAPDIFLAASRILDIPNSECVVIEDKLAGVQAAKAAKMRCIAVTTTLSEDTLKTAEPTLIRKEISDISLENILDGGSGSHSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="72766" e_stop="72917"/>
            <exon e_start="74390" e_stop="74507"/>
            <exon e_start="74585" e_stop="74654"/>
            <exon e_start="75348" e_stop="75470"/>
            <exon e_start="75573" e_stop="75601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.811" e_score="0.993"/>
          <exon-intron don_prob="0.673" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.072" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="72766" e_stop="72917" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.811">
            <gDNA_intron_boundary i_start="72918" i_stop="74389" i_length="1472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74390" e_stop="74507" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.673" acc_prob="0.971">
            <gDNA_intron_boundary i_start="74508" i_stop="74584" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74585" e_stop="74654" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.072">
            <gDNA_intron_boundary i_start="74655" i_stop="75347" i_length="693"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75348" e_stop="75470" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75471" i_stop="75572" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75573" e_stop="75601" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72766" stop="72917"/>
              <exon start="74390" stop="74507"/>
              <exon start="74585" stop="74654"/>
              <exon start="75348" stop="75470"/>
              <exon start="75573" stop="75601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAATGGTGAATGCGTTCCAGAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGGGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGG : GGTGTTGAAGGATTTGATGCCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATTAAAGGTGATTGAAATTTCATATATTTACGAATATCTACTCTCAAAGCAGATTTCACTGG : GCAATCATTTGTAGTATGCAGACCGAATTATGGCATAGGTGTCCCTGGTGCCTTTGAACTTTTCTCTCAG : GTCCATCCATTTCTTCACAGTATATATGCAAACACACACACTATGCGTTGGTTTGTAATGTAGTTCGGGAGGACGTAGTACTTTTATTAAGGCTAAAGTGTACAACTCGGATGAAAATCACAG : GTTTTGATGCAATTGTATCTGCTGATGCC</gDNA_template>
            <first_frame> F  N  G  E  C  V  P  E  I  G  R  E  N  V  R  C  A  L  Q  *  *  E  I  I  N  K  S  G  C  G  C  F  C  W  D  G  C  S  S  Y  R  *  R  F  C  A  F  H  G  H  G :   V  L  K  D  L  M  P  R  L  Q  R  R  G  S  L  R  Y  I  Y  *  R  *  L  K  F  H  I  F  T  N  I  Y  S  Q  S  R  F  H  W  :  A  I  I  C  S  M  Q  T  E  L  W  H  R  C  P  W  C  L  *  T  F  L  S   : G  P  S  I  S  S  Q  Y  I  C  K  H  T  H  Y  A  L  V  C  N  V  V  R  E  D  V  V  L  L  L  R  L  K  C  T  T  R  M  K  I  T   : G  F  D  A  I  V  S  A  D  A </first_frame>
            <second_frame>  L  M  V  N  A  F  Q  K  L  E  E  R  M  Y  G  V  L  C  N  S  E  K  S  S  T  K  A  A  V  D  A  F  A  G  M  G  V  Q  V  T  V  E  D  F  V  P  F  M  G  M   : G  C  *  R  I  *  C  R  G  C  K  E  E  V  L  *  D  I  F  I  K  G  D  *  N  F  I  Y  L  R  I  S  T  L  K  A  D  F  T  G :   Q  S  F  V  V  C  R  P  N  Y  G  I  G  V  P  G  A  F  E  L  F  S  Q  :  V  H  P  F  L  H  S  I  Y  A  N  T  H  T  M  R  W  F  V  M  *  F  G  R  T  *  Y  F  Y  *  G  *  S  V  Q  L  G  *  K  S  Q  :  V  L  M  Q  L  Y  L  L  M   </second_frame>
            <third_frame>   *  W  *  M  R  S  R  N  W  K  R  E  C  T  V  C  F  A  I  V  R  N  H  Q  Q  K  R  L  W  M  L  L  L  G  W  V  F  K  L  P  L  K  I  L  C  L  S  W  A  W  :  G  V  E  G  F  D  A  E  A  A  K  K  R  F  F  E  I  Y  L  L  K  V  I  E  I  S  Y  I  Y  E  Y  L  L  S  K  Q  I  S  L   : G  N  H  L  *  Y  A  D  R  I  M  A  *  V  S  L  V  P  L  N  F  S  L  R :   S  I  H  F  F  T  V  Y  M  Q  T  H  T  L  C  V  G  L  *  C  S  S  G  G  R  S  T  F  I  K  A  K  V  Y  N  S  D  E  N  H  R :   F  *  C  N  C  I  C  *  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72777" stop="72917"/>
                    <exon start="74390" stop="74507"/>
                    <exon start="74585" stop="74598"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRSRNWKRECTVCFAIVRNHQQKRLWMLLLGWVFKLPLKILCLSWAWGVEGFDAEAAKKRFFEIYLLKVIEISYIYEYLLSKQISLGNHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="77888" PGL_stop="78747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77888" e_stop="78030"/>
            <exon e_start="78196" e_stop="78466"/>
            <exon e_start="78501" e_stop="78640"/>
            <exon e_start="78691" e_stop="78747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.937"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.897"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.943"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="77888" e_stop="78030" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78031" i_stop="78195" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.897">
            <gDNA_exon_boundary e_start="78196" e_stop="78466" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78467" i_stop="78500" i_length="34"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="78501" e_stop="78640" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78641" i_stop="78690" i_length="50"/>
          </intron>
          <exon e_serial="4" e_score="0.789">
            <gDNA_exon_boundary e_start="78691" e_stop="78747" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77888" stop="78030"/>
              <exon start="78196" stop="78466"/>
              <exon start="78501" stop="78640"/>
              <exon start="78691" stop="78747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414385" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATAAGAGGAAGGAGTTCATATCGGATGTATGTCAAGTTGGAATGTGAAAACTAAAGAAAGTACTTGGGCAGAGTTCTGGTGCTAAGAAAATCAGAGATATGGCCATTAATGCCTGGAAGACTGTCTGAAAATGACAAAGAG : CCTTACATTGGAGCAAGTAAGCTGGATAAGGAAAGATATATCCAAGAAATGGCTGCTTATGAACAGCATAAGAACAAAGAAACTACAACAAATCCAAACTTGCACAGGGGTTTGGCCCCAAGTATGATCAACTTTGGTGCACGGAATTGATCATGGTTATCATGTGACTTCACAAGCTTATACTGGAAGCAACATTCTCCCTAATGCATCCTCTATTGAGTCCACGGTACAAATATTGAATAATGGTAAGACAAGTAACCCCATATTTCAG : TTGCTACTTTGGTGGGTTTTGAAAGATATGTATAGCTTTCGATCTGTAAGTATCTTACAACCTTAGCATGATGCTTTTAAGATGTATATAGCTTCTAGTCTTTGAAAACTAGCGTGTCAAGAAGCAGCATTTGTAGGTTA : TTTTGTCCTAGTTTTATTATTGTGATTCTTTTAATTTTTGATATCTTATCACTGTCT</gDNA_template>
            <first_frame> Q  *  E  E  G  V  H  I  G  C  M  S  S  W  N  V  K  T  K  E  S  T  W  A  E  F  W  C  *  E  N  Q  R  Y  G  H  *  C  L  E  D  C  L  K  M  T  K  S :   L  T  L  E  Q  V  S  W  I  R  K  D  I  S  K  K  W  L  L  M  N  S  I  R  T  K  K  L  Q  Q  I  Q  T  C  T  G  V  W  P  Q  V  *  S  T  L  V  H  G  I  D  H  G  Y  H  V  T  S  Q  A  Y  T  G  S  N  I  L  P  N  A  S  S  I  E  S  T  V  Q  I  L  N  N  G  K  T  S  N  P  I  F  Q  :  L  L  L  W  W  V  L  K  D  M  Y  S  F  R  S  V  S  I  L  Q  P  *  H  D  A  F  K  M  Y  I  A  S  S  L  *  K  L  A  C  Q  E  A  A  F  V  G  Y :   F  V  L  V  L  L  L  *  F  F  *  F  L  I  S  Y  H  C   </first_frame>
            <second_frame>  N  K  R  K  E  F  I  S  D  V  C  Q  V  G  M  *  K  L  K  K  V  L  G  Q  S  S  G  A  K  K  I  R  D  M  A  I  N  A  W  K  T  V  *  K  *  Q  R   : A  L  H  W  S  K  *  A  G  *  G  K  I  Y  P  R  N  G  C  L  *  T  A  *  E  Q  R  N  Y  N  K  S  K  L  A  Q  G  F  G  P  K  Y  D  Q  L  W  C  T  E  L  I  M  V  I  M  *  L  H  K  L  I  L  E  A  T  F  S  L  M  H  P  L  L  S  P  R  Y  K  Y  *  I  M  V  R  Q  V  T  P  Y  F  S :   C  Y  F  G  G  F  *  K  I  C  I  A  F  D  L  *  V  S  Y  N  L  S  M  M  L  L  R  C  I  *  L  L  V  F  E  N  *  R  V  K  K  Q  H  L  *  V   : I  L  S  *  F  Y  Y  C  D  S  F  N  F  *  Y  L  I  T  V  </second_frame>
            <third_frame>   I  R  G  R  S  S  Y  R  M  Y  V  K  L  E  C  E  N  *  R  K  Y  L  G  R  V  L  V  L  R  K  S  E  I  W  P  L  M  P  G  R  L  S  E  N  D  K  E  :  P  Y  I  G  A  S  K  L  D  K  E  R  Y  I  Q  E  M  A  A  Y  E  Q  H  K  N  K  E  T  T  T  N  P  N  L  H  R  G  L  A  P  S  M  I  N  F  G  A  R  N  *  S  W  L  S  C  D  F  T  S  L  Y  W  K  Q  H  S  P  *  C  I  L  Y  *  V  H  G  T  N  I  E  *  W  *  D  K  *  P  H  I  S   : V  A  T  L  V  G  F  E  R  Y  V  *  L  S  I  C  K  Y  L  T  T  L  A  *  C  F  *  D  V  Y  S  F  *  S  L  K  T  S  V  S  R  S  S  I  C  R  L  :  F  C  P  S  F  I  I  V  I  L  L  I  F  D  I  L  S  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77944" stop="78030"/>
                    <exon start="78196" stop="78345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKYLGRVLVLRKSEIWPLMPGRLSENDKEPYIGASKLDKERYIQEMAAYEQHKNKETTTNPNLHRGLAPSMINFGARN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78323" stop="78466"/>
                    <exon start="78501" stop="78566"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLVHGIDHGYHVTSQAYTGSNILPNASSIESTVQILNNGKTSNPIFQLLLWWVLKDMYSFRSVSILQP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="85618" PGL_stop="90863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85618" e_stop="86389"/>
            <exon e_start="87736" e_stop="87866"/>
            <exon e_start="88111" e_stop="88152"/>
            <exon e_start="88252" e_stop="88360"/>
            <exon e_start="88774" e_stop="88852"/>
            <exon e_start="88990" e_stop="89286"/>
            <exon e_start="89369" e_stop="89481"/>
            <exon e_start="89651" e_stop="89758"/>
            <exon e_start="89841" e_stop="89903"/>
            <exon e_start="89994" e_stop="90161"/>
            <exon e_start="90311" e_stop="90863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="0.971"/>
          <exon-intron don_prob="0.897" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.462" acc_prob="0.588" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="85618" e_stop="86389" e_length="772"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86390" i_stop="87735" i_length="1346"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="87736" e_stop="87866" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87867" i_stop="88110" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88111" e_stop="88152" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.897" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88153" i_stop="88251" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88252" e_stop="88360" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.462" acc_prob="0.588">
            <gDNA_intron_boundary i_start="88361" i_stop="88773" i_length="413"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88774" e_stop="88852" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.873" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88853" i_stop="88989" i_length="137"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88990" e_stop="89286" e_length="297"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="89287" i_stop="89368" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89369" e_stop="89481" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.957" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89482" i_stop="89650" i_length="169"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89651" e_stop="89758" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.866" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89759" i_stop="89840" i_length="82"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89841" e_stop="89903" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89904" i_stop="89993" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="89994" e_stop="90161" e_length="168"/>
          </exon>
          <intron i_serial="10" don_prob="0.966" acc_prob="0.989">
            <gDNA_intron_boundary i_start="90162" i_stop="90310" i_length="149"/>
          </intron>
          <exon e_serial="11" e_score="0.996">
            <gDNA_exon_boundary e_start="90311" e_stop="90863" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85618" stop="86389"/>
              <exon start="87736" stop="87804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85621" stop="86252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85621" stop="86235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87786" stop="87866"/>
              <exon start="88111" stop="88152"/>
              <exon start="88252" stop="88360"/>
              <exon start="88774" stop="88852"/>
              <exon start="88990" stop="89286"/>
              <exon start="89369" stop="89481"/>
              <exon start="89651" stop="89693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88992" stop="89286"/>
              <exon start="89369" stop="89481"/>
              <exon start="89651" stop="89758"/>
              <exon start="89841" stop="89903"/>
              <exon start="89994" stop="90161"/>
              <exon start="90311" stop="90454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89073" stop="89286"/>
              <exon start="89369" stop="89481"/>
              <exon start="89651" stop="89758"/>
              <exon start="89841" stop="89903"/>
              <exon start="89994" stop="90161"/>
              <exon start="90311" stop="90362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89073" stop="89286"/>
              <exon start="89369" stop="89481"/>
              <exon start="89651" stop="89758"/>
              <exon start="89841" stop="89903"/>
              <exon start="89994" stop="90079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89752" stop="89758"/>
              <exon start="89841" stop="89903"/>
              <exon start="89994" stop="90161"/>
              <exon start="90311" stop="90832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425748" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89855" stop="89903"/>
              <exon start="89994" stop="90161"/>
              <exon start="90311" stop="90817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429701" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89871" stop="89903"/>
              <exon start="89994" stop="90161"/>
              <exon start="90311" stop="90863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332856" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89901" stop="89903"/>
              <exon start="89994" stop="90161"/>
              <exon start="90311" stop="90863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332560" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGCCTTCTGTACTCTGCAGATCCATCTTCTTCATCTCTCTTTCAACACAAATTCAAACTTCAAACTAAACAAATTTCCGCTAATTTTTACTAATTTCGTTTTCGTGCAATTTTCTCAACCTTTGAGAGCTAACTGAGCTTTTCTTTTTTTTGGCTTGATTTGTTTTTCAAGTACATTGGGTTGTTTCTGAAACCCCAATGGGTGCTTGTACTTCTAGACCCTCAAATTATGCCGGGGACAGTAATGGCAACAGAGCCACACTTCCGGTGAAATCTACTCCGAACAATAATGAGGACGGTAACAGTCATCAGCAAGAAAGGACGAAAAAGGACGAAGCTGATGTAGGTAAAAAGTCACCTTTTTTCCCTTTCTACAGTCCTAGTCCGGCGCATTATTTGTTCTCCAAGAAATCTCCGTTGAGATCTCCGGCGAATGCCAGCACTAATTCTACTCCTCGAAGGTTTTTTAAACGGCCATTTCCTCCGCCGTCTCCAGCGAAACACATCCGTGCTGTGTTGGCTCGGCGACACGGCTCTGTGAAACCGAATGAGTCTGCGATTCCCGAAGTAAATGAAACGGAGGTTGGCGGTGGCGGTGGAGGCGGCGCGGGGCTTGATAAGAGTTTTGGATTTTCGAAGAATTTTGGGAACAAGTATGAGCTGGGAGAGGAAGTTGGAAGAGGGCATTTTGGATATACTTGTAAAGCTAAGTTCAGGAAAGGTGAAGTTAAAGGACAAGAAGTTGCTGTAAAAGTCATCCCCAAATCAAAG : ATGACTACTGCAATAGCCATTGAGGATGTGAGAAGAGAGGTGAAGATATTAAGAGCTTTGACAGGACATAGCAATTTAGTAAAATTTTATGATTCATATGAAGACCACACCAATGTCTACATAGTCATGGA : GCTGTGTGAAGGAGGTGAGCTTTTGGATAGAATACTCTCTAG : AGGTGGAAAGTACTCGGAGGATGATGCAAAGACTGTAATGATACAAATACTGAAAGTTGTTGCATTTTGCCACCTTCAAGGTGTGGTACACCGGGATCTTAAGCCAGAG : AATTTCTTATTTACGTCTAAAGAGGAAAATGCACAACTTAAAGCAATAGACTTTGGACTTTCTGATTTTGTGAAGCCAG : ATGAAAGACTTAATGATATAGTTGGTAGTGCATATTATGTTGCGCCCGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCCTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCTGCTCAGGCTTTGG : GTCATCCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGG : GCTTTGTCGAAGACATTGACAGTAGATGAGCTATTCTATTTGAAGGAGCAGTTTGCACTGCTACAACCAAGCAAAAATGGCACCATAAGCTTTGACCATGTTAAAACG : GTCCTGATGAAACATGCAACAGATGCAATGAAAGAAGCTCGCATCCATGATTTTCTTGCATCG : CTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCG : GAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTCAAGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCTACATTCTTGTCATGAATACATTGTTTGACAGTCAAATGAGCTTGGGAGTGACGAATGGAGAAGATCAATTTATGCCCCTCAGTCTGGAGCTTCATAGATCTCATTATTTTCTCATGAGATTCCGCGGAACATCATTCCTGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCGCACACTAGGTGTTTTAACTTGTTGGACATGCGCTGATGTCTACAATTGCATTGTGTAATGTTGTCTGCATGTTTTTATAGTTAAGAAGTTCCACCACT</gDNA_template>
            <first_frame> I  A  F  C  T  L  Q  I  H  L  L  H  L  S  F  N  T  N  S  N  F  K  L  N  K  F  P  L  I  F  T  N  F  V  F  V  Q  F  S  Q  P  L  R  A  N  *  A  F  L  F  F  G  L  I  C  F  S  S  T  L  G  C  F  *  N  P  N  G  C  L  Y  F  *  T  L  K  L  C  R  G  Q  *  W  Q  Q  S  H  T  S  G  E  I  Y  S  E  Q  *  *  G  R  *  Q  S  S  A  R  K  D  E  K  G  R  S  *  C  R  *  K  V  T  F  F  P  F  L  Q  S  *  S  G  A  L  F  V  L  Q  E  I  S  V  E  I  S  G  E  C  Q  H  *  F  Y  S  S  K  V  F  *  T  A  I  S  S  A  V  S  S  E  T  H  P  C  C  V  G  S  A  T  R  L  C  E  T  E  *  V  C  D  S  R  S  K  *  N  G  G  W  R  W  R  W  R  R  R  G  A  *  *  E  F  W  I  F  E  E  F  W  E  Q  V  *  A  G  R  G  S  W  K  R  A  F  W  I  Y  L  *  S  *  V  Q  E  R  *  S  *  R  T  R  S  C  C  K  S  H  P  Q  I  K   : D  D  Y  C  N  S  H  *  G  C  E  K  R  G  E  D  I  K  S  F  D  R  T  *  Q  F  S  K  I  L  *  F  I  *  R  P  H  Q  C  L  H  S  H  G  :  A  V  *  R  R  *  A  F  G  *  N  T  L  *  :  R  W  K  V  L  G  G  *  C  K  D  C  N  D  T  N  T  E  S  C  C  I  L  P  P  S  R  C  G  T  P  G  S  *  A  R   : E  F  L  I  Y  V  *  R  G  K  C  T  T  *  S  N  R  L  W  T  F  *  F  C  E  A  R :   *  K  T  *  *  Y  S  W  *  C  I  L  C  C  A  R  G  S  T  *  I  L  *  Y  R  G  *  C  L  E  Y  R  C  H  S  I  Y  P  I  V  W  K  P  S  F  L  G  S  N  R  I  W  D  I  *  V  C  P  Q  S  *  S  K  F  *  R  T  A  L  A  Y  I  I  F  *  G  E  R  L  C  E  T  S  I  E  *  G  S  P  E  K  N  D  C  C  S  G  F  G :   S  S  M  D  K  E  *  S  Q  H  R  S  A  F  G  Y  S  D  I  Q  T  D  E  G  L  H  A  V  L  C  S  *  E  S  C  T  T   : G  F  V  E  D  I  D  S  R  *  A  I  L  F  E  G  A  V  C  T  A  T  T  K  Q  K  W  H  H  K  L  *  P  C  *  N   : G  P  D  E  T  C  N  R  C  N  E  R  S  S  H  P  *  F  S  C  I   : A  *  C  A  A  V  Q  E  D  G  F  *  R  I  L  C  C  C  I  K  C  S  S  A  *  G  F  *  S  L  G  T  T  C  T  L  C  L  *  N  L  *  E  G  R  Q  *  G  H  Y  D  R  R  I  S  F   : G  T  W  S  *  P  F  G  S  C  P  C  C  S  T  *  L  A  Q  A  H  *  R  K  A  Q  F  S  W  F  C  K  V  V  A  W  S  V  *  P  F  N  C  K  S  S  M  I  Q  A  P  L  N  Q  K  M  V  L  L  V  Y  L  H  S  C  H  E  Y  I  V  *  Q  S  N  E  L  G  S  D  E  W  R  R  S  I  Y  A  P  Q  S  G  A  S  *  I  S  L  F  S  H  E  I  P  R  N  I  I  P  G  E  D  E  R  F  D  R  R  V  L  S  E  Q  *  H  P  A  Y  R  V  L  T  V  K  L  *  L  V  M  F  D  C  R  *  E  Y  F  S  A  G  F  W  S  H  T  R  C  F  N  L  L  D  M  R  *  C  L  Q  L  H  C  V  M  L  S  A  C  F  Y  S  *  E  V  P  P   </first_frame>
            <second_frame>  S  P  S  V  L  C  R  S  I  F  F  I  S  L  S  T  Q  I  Q  T  S  N  *  T  N  F  R  *  F  L  L  I  S  F  S  C  N  F  L  N  L  *  E  L  T  E  L  F  F  F  L  A  *  F  V  F  Q  V  H  W  V  V  S  E  T  P  M  G  A  C  T  S  R  P  S  N  Y  A  G  D  S  N  G  N  R  A  T  L  P  V  K  S  T  P  N  N  N  E  D  G  N  S  H  Q  Q  E  R  T  K  K  D  E  A  D  V  G  K  K  S  P  F  F  P  F  Y  S  P  S  P  A  H  Y  L  F  S  K  K  S  P  L  R  S  P  A  N  A  S  T  N  S  T  P  R  R  F  F  K  R  P  F  P  P  P  S  P  A  K  H  I  R  A  V  L  A  R  R  H  G  S  V  K  P  N  E  S  A  I  P  E  V  N  E  T  E  V  G  G  G  G  G  G  G  A  G  L  D  K  S  F  G  F  S  K  N  F  G  N  K  Y  E  L  G  E  E  V  G  R  G  H  F  G  Y  T  C  K  A  K  F  R  K  G  E  V  K  G  Q  E  V  A  V  K  V  I  P  K  S  K  :  M  T  T  A  I  A  I  E  D  V  R  R  E  V  K  I  L  R  A  L  T  G  H  S  N  L  V  K  F  Y  D  S  Y  E  D  H  T  N  V  Y  I  V  M  E :   L  C  E  G  G  E  L  L  D  R  I  L  S  R :   G  G  K  Y  S  E  D  D  A  K  T  V  M  I  Q  I  L  K  V  V  A  F  C  H  L  Q  G  V  V  H  R  D  L  K  P  E  :  N  F  L  F  T  S  K  E  E  N  A  Q  L  K  A  I  D  F  G  L  S  D  F  V  K  P   : D  E  R  L  N  D  I  V  G  S  A  Y  Y  V  A  P  E  V  L  H  R  S  Y  S  T  E  A  D  V  W  S  I  G  V  I  A  Y  I  L  L  C  G  S  R  P  F  W  A  R  T  E  S  G  I  F  R  S  V  L  K  A  D  P  S  F  E  E  Q  P  W  P  T  L  S  S  E  A  K  D  F  V  K  R  L  L  N  K  D  P  R  K  R  M  T  A  A  Q  A  L   : G  H  P  W  I  K  N  S  H  N  I  E  V  P  L  D  I  L  I  F  K  L  M  K  A  Y  M  R  S  S  A  L  R  K  A  A  L  R  :  A  L  S  K  T  L  T  V  D  E  L  F  Y  L  K  E  Q  F  A  L  L  Q  P  S  K  N  G  T  I  S  F  D  H  V  K  T  :  V  L  M  K  H  A  T  D  A  M  K  E  A  R  I  H  D  F  L  A  S  :  L  N  A  L  Q  Y  R  R  M  D  F  E  E  F  C  A  A  A  L  S  V  H  Q  L  E  A  F  D  R  W  E  Q  H  A  R  C  A  Y  E  I  F  E  K  E  G  N  R  A  I  M  I  E  E  L  A  S  :  E  L  G  L  S  P  S  V  P  V  H  A  V  L  H  D  W  L  R  H  T  D  G  K  L  S  F  L  G  F  A  K  L  L  H  G  V  S  S  R  S  I  A  K  V  Q  *  F  K  P  H  *  I  R  K  W  F  S  W  C  I  Y  I  L  V  M  N  T  L  F  D  S  Q  M  S  L  G  V  T  N  G  E  D  Q  F  M  P  L  S  L  E  L  H  R  S  H  Y  F  L  M  R  F  R  G  T  S  F  L  E  R  M  R  G  L  T  A  V  C  Y  Q  S  S  D  I  L  H  I  E  F  L  L  *  S  C  S  *  L  C  L  I  A  G  E  S  T  S  Q  L  V  F  G  R  T  L  G  V  L  T  C  W  T  C  A  D  V  Y  N  C  I  V  *  C  C  L  H  V  F  I  V  K  K  F  H  H  </second_frame>
            <third_frame>   R  L  L  Y  S  A  D  P  S  S  S  S  L  F  Q  H  K  F  K  L  Q  T  K  Q  I  S  A  N  F  Y  *  F  R  F  R  A  I  F  S  T  F  E  S  *  L  S  F  S  F  F  W  L  D  L  F  F  K  Y  I  G  L  F  L  K  P  Q  W  V  L  V  L  L  D  P  Q  I  M  P  G  T  V  M  A  T  E  P  H  F  R  *  N  L  L  R  T  I  M  R  T  V  T  V  I  S  K  K  G  R  K  R  T  K  L  M  *  V  K  S  H  L  F  S  L  S  T  V  L  V  R  R  I  I  C  S  P  R  N  L  R  *  D  L  R  R  M  P  A  L  I  L  L  L  E  G  F  L  N  G  H  F  L  R  R  L  Q  R  N  T  S  V  L  C  W  L  G  D  T  A  L  *  N  R  M  S  L  R  F  P  K  *  M  K  R  R  L  A  V  A  V  E  A  A  R  G  L  I  R  V  L  D  F  R  R  I  L  G  T  S  M  S  W  E  R  K  L  E  E  G  I  L  D  I  L  V  K  L  S  S  G  K  V  K  L  K  D  K  K  L  L  *  K  S  S  P  N  Q  R :   *  L  L  Q  *  P  L  R  M  *  E  E  R  *  R  Y  *  E  L  *  Q  D  I  A  I  *  *  N  F  M  I  H  M  K  T  T  P  M  S  T  *  S  W   : S  C  V  K  E  V  S  F  W  I  E  Y  S  L   : E  V  E  S  T  R  R  M  M  Q  R  L  *  *  Y  K  Y  *  K  L  L  H  F  A  T  F  K  V  W  Y  T  G  I  L  S  Q  R :   I  S  Y  L  R  L  K  R  K  M  H  N  L  K  Q  *  T  L  D  F  L  I  L  *  S  Q  :  M  K  D  L  M  I  *  L  V  V  H  I  M  L  R  P  R  F  Y  I  D  L  I  V  Q  R  L  M  F  G  V  *  V  S  *  H  I  S  Y  C  V  E  A  V  L  F  G  L  E  Q  N  L  G  Y  L  G  L  S  S  K  L  I  Q  V  L  K  N  S  P  G  L  H  Y  L  L  R  R  K  T  L  *  N  V  Y  *  I  R  I  P  G  K  E  *  L  L  L  R  L  W  :  V  I  H  G  *  R  I  V  T  T  *  K  C  L  W  I  F  *  Y  S  N  *  *  R  L  T  C  G  P  L  L  L  G  K  L  H  Y  G :   L  C  R  R  H  *  Q  *  M  S  Y  S  I  *  R  S  S  L  H  C  Y  N  Q  A  K  M  A  P  *  A  L  T  M  L  K  R :   S  *  *  N  M  Q  Q  M  Q  *  K  K  L  A  S  M  I  F  L  H  R :   L  M  R  C  S  T  G  G  W  I  L  K  N  F  V  L  L  H  *  V  F  I  S  L  R  L  L  I  V  G  N  N  M  H  V  V  P  M  K  S  L  R  R  K  A  I  G  P  L  *  *  K  N  *  L  R :   N  L  V  L  A  L  R  F  L  S  M  L  F  Y  M  T  G  S  G  T  L  T  E  S  S  V  F  L  V  L  Q  S  C  C  M  E  C  L  A  V  Q  L  Q  K  F  N  D  S  S  P  T  E  S  E  N  G  S  L  G  V  S  T  F  L  S  *  I  H  C  L  T  V  K  *  A  W  E  *  R  M  E  K  I  N  L  C  P  S  V  W  S  F  I  D  L  I  I  F  S  *  D  S  A  E  H  H  S  W  R  G  *  E  V  *  P  P  C  V  I  R  A  V  T  S  C  I  *  S  S  Y  C  K  A  V  V  S  Y  V  *  L  Q  V  R  V  L  L  S  W  F  L  V  A  H  *  V  F  *  L  V  G  H  A  L  M  S  T  I  A  L  C  N  V  V  C  M  F  L  *  L  R  S  S  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85778" stop="86389"/>
                    <exon start="87736" stop="87866"/>
                    <exon start="88111" stop="88152"/>
                    <exon start="88252" stop="88360"/>
                    <exon start="88774" stop="88852"/>
                    <exon start="88990" stop="89286"/>
                    <exon start="89369" stop="89481"/>
                    <exon start="89651" stop="89758"/>
                    <exon start="89841" stop="89903"/>
                    <exon start="89994" stop="90161"/>
                    <exon start="90311" stop="90451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1860</number_coding_nucleotides>
                  <number_encoded_amino_acids>620</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVFQVHWVVSETPMGACTSRPSNYAGDSNGNRATLPVKSTPNNNEDGNSHQQERTKKDEADVGKKSPFFPFYSPSPAHYLFSKKSPLRSPANASTNSTPRRFFKRPFPPPSPAKHIRAVLARRHGSVKPNESAIPEVNETEVGGGGGGGAGLDKSFGFSKNFGNKYELGEEVGRGHFGYTCKAKFRKGEVKGQEVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHSNLVKFYDSYEDHTNVYIVMELCEGGELLDRILSRGGKYSEDDAKTVMIQILKVVAFCHLQGVVHRDLKPENFLFTSKEENAQLKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRSVLKADPSFEEQPWPTLSSEAKDFVKRLLNKDPRKRMTAAQALGHPWIKNSHNIEVPLDILIFKLMKAYMRSSALRKAALRALSKTLTVDELFYLKEQFALLQPSKNGTISFDHVKTVLMKHATDAMKEARIHDFLASLNALQYRRMDFEEFCAAALSVHQLEAFDRWEQHARCAYEIFEKEGNRAIMIEELASELGLSPSVPVHAVLHDWLRHTDGKLSFLGFAKLLHGVSSRSIAKVQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90467" stop="90706"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRKWFSWCIYILVMNTLFDSQMSLGVTNGEDQFMPLSLELHRSHYFLMRFRGTSFLERMRGLTAVCYQSSDILHIEFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="93773" PGL_stop="93163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93773" e_stop="93163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93773" e_stop="93163" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93773" stop="93163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATTTTAACATGTAATATGTGGAATATGGATGGACAGATTTTATCTACACCCTCTTTTTATTTGTAGACATCTTAATAAAGAGTTTACTCTATTTAGTGTCATGTCATGGGATATGAAAACGCATCAAATCTTTGTAGTTCGTCTTGACTTTGTATTTATGTATACTATGCACACTCTGTAGAGTTTCACATTCTCATGGATTTGACTCTTTTTGTGATTCAAATACATTTGGTATACTCACTAATTAGTAATGTTGGATCCTTGCTCACCTACTTGTATTGTTGAGTGATGCATGTAACTGAGAAAAATAATTAAATTCCAGAAACAGAACAAGGGGGAGCCAAACCATGAAAAAGGGAAACACATTCAACTTCTAATTTTCAAGACTAAAGGTACAATTTCACATCCTTTTTCAGGCTTTTGAAATTGTAGGTCTCTTTTTCTTGAAATCGAACCGCAATGTTCTATTTTGAATGGTGTTGTAGTAGTATTTAGTAGTTATTCTTGGATAGAAGTTACAACTTTAGTATTAGATACAAAAAAGTTTAAAATACTTCACATGTAGAGTCGACTTTATAGCAGTTCTGGGATTGAGAGACTAATGATGG</gDNA_template>
            <first_frame> F  I  L  T  C  N  M  W  N  M  D  G  Q  I  L  S  T  P  S  F  Y  L  *  T  S  *  *  R  V  Y  S  I  *  C  H  V  M  G  Y  E  N  A  S  N  L  C  S  S  S  *  L  C  I  Y  V  Y  Y  A  H  S  V  E  F  H  I  L  M  D  L  T  L  F  V  I  Q  I  H  L  V  Y  S  L  I  S  N  V  G  S  L  L  T  Y  L  Y  C  *  V  M  H  V  T  E  K  N  N  *  I  P  E  T  E  Q  G  G  A  K  P  *  K  R  E  T  H  S  T  S  N  F  Q  D  *  R  Y  N  F  T  S  F  F  R  L  L  K  L  *  V  S  F  S  *  N  R  T  A  M  F  Y  F  E  W  C  C  S  S  I  *  *  L  F  L  D  R  S  Y  N  F  S  I  R  Y  K  K  V  *  N  T  S  H  V  E  S  T  L  *  Q  F  W  D  *  E  T  N  D   </first_frame>
            <second_frame>  L  F  *  H  V  I  C  G  I  W  M  D  R  F  Y  L  H  P  L  F  I  C  R  H  L  N  K  E  F  T  L  F  S  V  M  S  W  D  M  K  T  H  Q  I  F  V  V  R  L  D  F  V  F  M  Y  T  M  H  T  L  *  S  F  T  F  S  W  I  *  L  F  L  *  F  K  Y  I  W  Y  T  H  *  L  V  M  L  D  P  C  S  P  T  C  I  V  E  *  C  M  *  L  R  K  I  I  K  F  Q  K  Q  N  K  G  E  P  N  H  E  K  G  K  H  I  Q  L  L  I  F  K  T  K  G  T  I  S  H  P  F  S  G  F  *  N  C  R  S  L  F  L  E  I  E  P  Q  C  S  I  L  N  G  V  V  V  V  F  S  S  Y  S  W  I  E  V  T  T  L  V  L  D  T  K  K  F  K  I  L  H  M  *  S  R  L  Y  S  S  S  G  I  E  R  L  M  M  </second_frame>
            <third_frame>   Y  F  N  M  *  Y  V  E  Y  G  W  T  D  F  I  Y  T  L  F  L  F  V  D  I  L  I  K  S  L  L  Y  L  V  S  C  H  G  I  *  K  R  I  K  S  L  *  F  V  L  T  L  Y  L  C  I  L  C  T  L  C  R  V  S  H  S  H  G  F  D  S  F  C  D  S  N  T  F  G  I  L  T  N  *  *  C  W  I  L  A  H  L  L  V  L  L  S  D  A  C  N  *  E  K  *  L  N  S  R  N  R  T  R  G  S  Q  T  M  K  K  G  N  T  F  N  F  *  F  S  R  L  K  V  Q  F  H  I  L  F  Q  A  F  E  I  V  G  L  F  F  L  K  S  N  R  N  V  L  F  *  M  V  L  *  *  Y  L  V  V  I  L  G  *  K  L  Q  L  *  Y  *  I  Q  K  S  L  K  Y  F  T  C  R  V  D  F  I  A  V  L  G  L  R  D  *  *  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="95180" PGL_stop="94941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95180" e_stop="94941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="95180" e_stop="94941" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95180" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95179" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95179" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95179" stop="94941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTACAAAGGTGAGAAAAGAAGAGTGACGCATCACATAGAAAAATAATTTGTGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTATAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCCTTGTTTTCCCCTTATTTAGGAGGGTTTCCAC</gDNA_template>
            <first_frame> R  I  T  K  V  R  K  E  E  *  R  I  T  *  K  N  N  L  *  G  K  I  E  S  V  S  D  I  V  V  R  W  K  N  Q  K  S  V  I  S  F  E  C  V  V  V  F  G  V  L  L  R  H  T  S  I  K  S  L  L  *  *  Y  S  L  L  L  S  G  P  C  F  P  L  I  *  E  G  F  H </first_frame>
            <second_frame>  E  L  Q  R  *  E  K  K  S  D  A  S  H  R  K  I  I  C  E  E  K  *  R  V  *  A  I  L  *  *  G  G  K  I  K  R  V  L  F  L  L  N  V  *  W  S  L  E  F  Y  S  D  I  Q  V  *  N  P  Y  Y  S  D  I  R  C  S  S  R  V  L  V  F  P  L  F  R  R  V  S   </second_frame>
            <third_frame>   N  Y  K  G  E  K  R  R  V  T  H  H  I  E  K  *  F  V  R  K  N  R  E  C  E  R  Y  C  S  E  V  E  K  S  K  E  C  Y  F  F  *  M  C  S  G  L  W  S  F  T  Q  T  Y  K  Y  K  I  L  T  I  V  I  F  V  A  P  L  G  S  L  F  S  P  Y  L  G  G  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="96719" PGL_stop="99767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98678" e_stop="98816"/>
            <exon e_start="99025" e_stop="99123"/>
            <exon e_start="99208" e_stop="99340"/>
            <exon e_start="99439" e_stop="99767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.479" acc_prob="0.871" e_score="0.950"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.593" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="98678" e_stop="98816" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.479" acc_prob="0.871">
            <gDNA_intron_boundary i_start="98817" i_stop="99024" i_length="208"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99025" e_stop="99123" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99124" i_stop="99207" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99208" e_stop="99340" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.593" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99341" i_stop="99438" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="0.900">
            <gDNA_exon_boundary e_start="99439" e_stop="99767" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98678" stop="98816"/>
              <exon start="99025" stop="99123"/>
              <exon start="99208" stop="99340"/>
              <exon start="99439" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98678" stop="98816"/>
              <exon start="99025" stop="99123"/>
              <exon start="99208" stop="99340"/>
              <exon start="99439" stop="99612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98774" stop="98816"/>
              <exon start="99025" stop="99123"/>
              <exon start="99208" stop="99340"/>
              <exon start="99439" stop="99584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCTTTTGGATTAATCATGTTGTGTTTTGAAGGTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAGAGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACG : GTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAG : AGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAG : GTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAAACATCAGCGAAAGCCTTATCCACCAGGAAGATTGAATTTGGCAGAGGCCAGTAACTGTAAACCCCCTATGAGGAATCCAAGCTTTGTGCCTGCCGGTAGGGAGACCTCATTGCAGTTCAATTATCCTCCAGCAACTAATTTTCGCCAATTTGAGTCATATTCTTACAGCCAAAGAATACAATATTCGCATTCATCTAAC</gDNA_template>
            <first_frame> C  L  L  D  *  S  C  C  V  L  K  V  *  K  D  E  K  G  W  R  T  I  R  E  E  N  H  C  W  *  D  C  Q  G  E  L  W  R  C  Q  T  A  A  Y  L  Y   : G  *  G  V  M  E  P  R  G  *  T  I  T  S  T  F  S  I  A  C  E  G  T  K  P  L  *  D  E  D  F  Q  T   : E  M  E  G  *  R  G  K  T  R  S  A  R  R  E  A  Q  T  W  R  C  S  E  I  Y  *  S  N  K  K  I  K  I  N  K  A  D  K  S  I  L  *  K  Q  R :   *  Q  A  P  E  T  *  S  S  Y  E  A  K  Q  N  D  A  D  K  Q  C  K  E  T  *  S  F  Y  *  *  T  W  E  S  N  G  R  K  *  K  N  E  K  T  S  A  K  A  L  S  T  R  K  I  E  F  G  R  G  Q  *  L  *  T  P  Y  E  E  S  K  L  C  A  C  R  *  G  D  L  I  A  V  Q  L  S  S  S  N  *  F  S  P  I  *  V  I  F  L  Q  P  K  N  T  I  F  A  F  I  *  </first_frame>
            <second_frame>  A  F  W  I  N  H  V  V  F  *  R  F  E  K  M  R  R  G  G  E  Q  S  G  K  R  T  I  A  G  R  I  V  K  E  S  Y  G  A  A  K  Q  Q  H  T  F  T  :  V  E  V  L  W  S  Q  G  V  K  Q  L  P  P  L  F  P  L  L  V  K  G  R  N  L  Y  K  M  K  T  F  R  Q  :  R  W  R  D  E  E  E  R  L  E  V  L  G  E  K  H  K  R  G  D  A  A  R  F  I  R  A  T  R  K  S  K  S  T  K  P  T  K  A  S  S  K  N  K   : G  N  K  R  Q  K  L  D  H  H  M  R  P  S  K  M  M  Q  T  S  N  V  K  K  H  N  H  S  I  D  E  R  G  K  A  M  A  G  S  K  R  T  K  K  H  Q  R  K  P  Y  P  P  G  R  L  N  L  A  E  A  S  N  C  K  P  P  M  R  N  P  S  F  V  P  A  G  R  E  T  S  L  Q  F  N  Y  P  P  A  T  N  F  R  Q  F  E  S  Y  S  Y  S  Q  R  I  Q  Y  S  H  S  S  N </second_frame>
            <third_frame>   P  F  G  L  I  M  L  C  F  E  G  L  K  R  *  E  G  V  E  N  N  Q  G  R  E  P  L  L  V  G  L  S  R  R  A  M  A  L  P  N  S  S  I  P  L  R :   L  R  C  Y  G  A  K  G  L  N  N  Y  L  H  F  F  H  C  L  *  R  D  E  T  F  I  R  *  R  L  S  D  R :   D  G  G  M  K  R  K  D  *  K  C  S  E  R  S  T  N  V  E  M  Q  R  D  L  L  E  Q  Q  E  N  Q  N  Q  Q  S  R  Q  K  H  P  L  K  T  K  :  V  T  S  A  R  N  L  I  I  I  *  G  Q  A  K  *  C  R  Q  A  M  *  R  N  I  I  I  L  L  M  N  V  G  K  Q  W  Q  E  V  K  E  R  K  N  I  S  E  S  L  I  H  Q  E  D  *  I  W  Q  R  P  V  T  V  N  P  L  *  G  I  Q  A  L  C  L  P  V  G  R  P  H  C  S  S  I  I  L  Q  Q  L  I  F  A  N  L  S  H  I  L  T  A  K  E  Y  N  I  R  I  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98709" stop="98816"/>
                    <exon start="99025" stop="99123"/>
                    <exon start="99208" stop="99340"/>
                    <exon start="99439" stop="99767"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFEKMRRGGEQSGKRTIAGRIVKESYGAAKQQHTFTVEVLWSQGVKQLPPLFPLLVKGRNLYKMKTFRQRWRDEEERLEVLGEKHKRGDAARFIRATRKSKSTKPTKASSKNKGNKRQKLDHHMRPSKMMQTSNVKKHNHSIDERGKAMAGSKRTKKHQRKPYPPGRLNLAEASNCKPPMRNPSFVPAGRETSLQFNYPPATNFRQFESYSYSQRIQYSHSSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96719" e_stop="96893"/>
            <exon e_start="96989" e_stop="97116"/>
            <exon e_start="97764" e_stop="97902"/>
            <exon e_start="98385" e_stop="98446"/>
            <exon e_start="98568" e_stop="98619"/>
            <exon e_start="98711" e_stop="98816"/>
            <exon e_start="99025" e_stop="99123"/>
            <exon e_start="99208" e_stop="99340"/>
            <exon e_start="99439" e_stop="99584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.971"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.955" e_score="0.991"/>
          <exon-intron don_prob="0.164" acc_prob="0.997" e_score="0.984"/>
          <exon-intron don_prob="0.071" acc_prob="0.997" e_score="0.962"/>
          <exon-intron don_prob="0.479" acc_prob="0.871" e_score="0.943"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.593" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="96719" e_stop="96893" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="96894" i_stop="96988" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96989" e_stop="97116" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97117" i_stop="97763" i_length="647"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="97764" e_stop="97902" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.955">
            <gDNA_intron_boundary i_start="97903" i_stop="98384" i_length="482"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="98385" e_stop="98446" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.164" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98447" i_stop="98567" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="98568" e_stop="98619" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.071" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98620" i_stop="98710" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="0.943">
            <gDNA_exon_boundary e_start="98711" e_stop="98816" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.479" acc_prob="0.871">
            <gDNA_intron_boundary i_start="98817" i_stop="99024" i_length="208"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99025" e_stop="99123" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99124" i_stop="99207" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99208" e_stop="99340" e_length="133"/>
          </exon>
          <intron i_serial="8" don_prob="0.593" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99341" i_stop="99438" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="99439" e_stop="99584" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96719" stop="96893"/>
              <exon start="96989" stop="97116"/>
              <exon start="97764" stop="97875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97802" stop="97902"/>
              <exon start="98385" stop="98446"/>
              <exon start="98568" stop="98619"/>
              <exon start="98711" stop="98816"/>
              <exon start="99025" stop="99123"/>
              <exon start="99208" stop="99340"/>
              <exon start="99439" stop="99520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98774" stop="98816"/>
              <exon start="99025" stop="99123"/>
              <exon start="99208" stop="99340"/>
              <exon start="99439" stop="99584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGGAAAGGAGTAGGGCAAAACGTTGTGTGATTGAGATTTCCTCTTCTTCCGAGCAAGAAAATGGTGACGATGAAGGAGGAGGAGAAAGTTCAGAAGAATCAGTACAAATATTAGGATCGGATGACGATTTTGATGCCGCTAGTACATATGATTTTGACGACTCTGCCTCAAG : CGAGAGCAACGGTGATTCCGAAGATGAGGAGGAAGACGAGTCTTCCCCGTCTCAACAACATGGTGATGAGGATATCCAAGAGGAAGGTGAGGAATCGGGTAGCGAAAGAGTGCTTCAGCTTCTCCAAG : GTGGTGGAGAATTGAGGAAGCTAATTGAAGGATTGGGGAAGCTCGCTTTGACGGACTATAAAGCATATTTGCGATCAAATGGATTGAGGTTATCAGGTACAAAAGAAGAATGTATACAGAGGATCATAGAGCACTGGAG : GATTAAAGATGGAAATGGTCAAAGACAATATCCCAGATCATCTTTTACCATAAACTGCACTG : GTGACGTATGTAAAGGAGATGTTGTATTATTTCAACAGAAAGTGTACAAGAA : GTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAGAGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACG : GTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAG : AGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAG : GTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAAACATCAGCGAAAGCCT</gDNA_template>
            <first_frame> *  W  K  G  V  G  Q  N  V  V  *  L  R  F  P  L  L  P  S  K  K  M  V  T  M  K  E  E  E  K  V  Q  K  N  Q  Y  K  Y  *  D  R  M  T  I  L  M  P  L  V  H  M  I  L  T  T  L  P  Q   : A  R  A  T  V  I  P  K  M  R  R  K  T  S  L  P  R  L  N  N  M  V  M  R  I  S  K  R  K  V  R  N  R  V  A  K  E  C  F  S  F  S  K  :  V  V  E  N  *  G  S  *  L  K  D  W  G  S  S  L  *  R  T  I  K  H  I  C  D  Q  M  D  *  G  Y  Q  V  Q  K  K  N  V  Y  R  G  S  *  S  T  G   : G  L  K  M  E  M  V  K  D  N  I  P  D  H  L  L  P  *  T  A  L  :  V  T  Y  V  K  E  M  L  Y  Y  F  N  R  K  C  T  R   : S  L  K  R  *  E  G  V  E  N  N  Q  G  R  E  P  L  L  V  G  L  S  R  R  A  M  A  L  P  N  S  S  I  P  L  R :   L  R  C  Y  G  A  K  G  L  N  N  Y  L  H  F  F  H  C  L  *  R  D  E  T  F  I  R  *  R  L  S  D  R :   D  G  G  M  K  R  K  D  *  K  C  S  E  R  S  T  N  V  E  M  Q  R  D  L  L  E  Q  Q  E  N  Q  N  Q  Q  S  R  Q  K  H  P  L  K  T  K  :  V  T  S  A  R  N  L  I  I  I  *  G  Q  A  K  *  C  R  Q  A  M  *  R  N  I  I  I  L  L  M  N  V  G  K  Q  W  Q  E  V  K  E  R  K  N  I  S  E  S   </first_frame>
            <second_frame>  D  G  K  E  *  G  K  T  L  C  D  *  D  F  L  F  F  R  A  R  K  W  *  R  *  R  R  R  R  K  F  R  R  I  S  T  N  I  R  I  G  *  R  F  *  C  R  *  Y  I  *  F  *  R  L  C  L  K  :  R  E  Q  R  *  F  R  R  *  G  G  R  R  V  F  P  V  S  T  T  W  *  *  G  Y  P  R  G  R  *  G  I  G  *  R  K  S  A  S  A  S  P  R :   W  W  R  I  E  E  A  N  *  R  I  G  E  A  R  F  D  G  L  *  S  I  F  A  I  K  W  I  E  V  I  R  Y  K  R  R  M  Y  T  E  D  H  R  A  L  E  :  D  *  R  W  K  W  S  K  T  I  S  Q  I  I  F  Y  H  K  L  H  W :   *  R  M  *  R  R  C  C  I  I  S  T  E  S  V  Q  E  :  V  *  K  D  E  K  G  W  R  T  I  R  E  E  N  H  C  W  *  D  C  Q  G  E  L  W  R  C  Q  T  A  A  Y  L  Y   : G  *  G  V  M  E  P  R  G  *  T  I  T  S  T  F  S  I  A  C  E  G  T  K  P  L  *  D  E  D  F  Q  T   : E  M  E  G  *  R  G  K  T  R  S  A  R  R  E  A  Q  T  W  R  C  S  E  I  Y  *  S  N  K  K  I  K  I  N  K  A  D  K  S  I  L  *  K  Q  R :   *  Q  A  P  E  T  *  S  S  Y  E  A  K  Q  N  D  A  D  K  Q  C  K  E  T  *  S  F  Y  *  *  T  W  E  S  N  G  R  K  *  K  N  E  K  T  S  A  K  A  </second_frame>
            <third_frame>   M  E  R  S  R  A  K  R  C  V  I  E  I  S  S  S  S  E  Q  E  N  G  D  D  E  G  G  G  E  S  S  E  E  S  V  Q  I  L  G  S  D  D  D  F  D  A  A  S  T  Y  D  F  D  D  S  A  S  S :   E  S  N  G  D  S  E  D  E  E  E  D  E  S  S  P  S  Q  Q  H  G  D  E  D  I  Q  E  E  G  E  E  S  G  S  E  R  V  L  Q  L  L  Q   : G  G  G  E  L  R  K  L  I  E  G  L  G  K  L  A  L  T  D  Y  K  A  Y  L  R  S  N  G  L  R  L  S  G  T  K  E  E  C  I  Q  R  I  I  E  H  W  R :   I  K  D  G  N  G  Q  R  Q  Y  P  R  S  S  F  T  I  N  C  T   : G  D  V  C  K  G  D  V  V  L  F  Q  Q  K  V  Y  K  K :   F  E  K  M  R  R  G  G  E  Q  S  G  K  R  T  I  A  G  R  I  V  K  E  S  Y  G  A  A  K  Q  Q  H  T  F  T  :  V  E  V  L  W  S  Q  G  V  K  Q  L  P  P  L  F  P  L  L  V  K  G  R  N  L  Y  K  M  K  T  F  R  Q  :  R  W  R  D  E  E  E  R  L  E  V  L  G  E  K  H  K  R  G  D  A  A  R  F  I  R  A  T  R  K  S  K  S  T  K  P  T  K  A  S  S  K  N  K   : G  N  K  R  Q  K  L  D  H  H  M  R  P  S  K  M  M  Q  T  S  N  V  K  K  H  N  H  S  I  D  E  R  G  K  A  M  A  G  S  K  R  T  K  K  H  Q  R  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96721" stop="96893"/>
                    <exon start="96989" stop="97116"/>
                    <exon start="97764" stop="97902"/>
                    <exon start="98385" stop="98446"/>
                    <exon start="98568" stop="98619"/>
                    <exon start="98711" stop="98816"/>
                    <exon start="99025" stop="99123"/>
                    <exon start="99208" stop="99340"/>
                    <exon start="99439" stop="99584"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MERSRAKRCVIEISSSSEQENGDDEGGGESSEESVQILGSDDDFDAASTYDFDDSASSESNGDSEDEEEDESSPSQQHGDEDIQEEGEESGSERVLQLLQGGGELRKLIEGLGKLALTDYKAYLRSNGLRLSGTKEECIQRIIEHWRIKDGNGQRQYPRSSFTINCTGDVCKGDVVLFQQKVYKKFEKMRRGGEQSGKRTIAGRIVKESYGAAKQQHTFTVEVLWSQGVKQLPPLFPLLVKGRNLYKMKTFRQRWRDEEERLEVLGEKHKRGDAARFIRATRKSKSTKPTKASSKNKGNKRQKLDHHMRPSKMMQTSNVKKHNHSIDERGKAMAGSKRTKKHQRKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="98429" e_stop="98619"/>
            <exon e_start="98711" e_stop="98816"/>
            <exon e_start="99025" e_stop="99123"/>
            <exon e_start="99208" e_stop="99340"/>
            <exon e_start="99439" e_stop="99584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.071" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.479" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.593" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98429" e_stop="98619" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.071" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98620" i_stop="98710" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98711" e_stop="98816" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.479" acc_prob="0.871">
            <gDNA_intron_boundary i_start="98817" i_stop="99024" i_length="208"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99025" e_stop="99123" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99124" i_stop="99207" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99208" e_stop="99340" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.593" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99341" i_stop="99438" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99439" e_stop="99584" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98429" stop="98619"/>
              <exon start="98711" stop="98816"/>
              <exon start="99025" stop="99123"/>
              <exon start="99208" stop="99340"/>
              <exon start="99439" stop="99533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98774" stop="98816"/>
              <exon start="99025" stop="99123"/>
              <exon start="99208" stop="99340"/>
              <exon start="99439" stop="99584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACCATAAACTGCACTGGTAGTTAATATTTGGCATCAGCCATCAATGACACCTCAGGATCTCTGTTTCATCTATGCTTCTTGTACTTCCCCTTTTGTTTTTGATCTTTGAGTGTTTAGGTTGGTGATTCCATGTGCAGGTGACGTATGTAAAGGAGATGTTGTATTATTTCAACAGAAAGTGTACAAGAA : GTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAGAGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACG : GTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAG : AGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAG : GTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAAACATCAGCGAAAGCCT</gDNA_template>
            <first_frame> L  P  *  T  A  L  V  V  N  I  W  H  Q  P  S  M  T  P  Q  D  L  C  F  I  Y  A  S  C  T  S  P  F  V  F  D  L  *  V  F  R  L  V  I  P  C  A  G  D  V  C  K  G  D  V  V  L  F  Q  Q  K  V  Y  K  K :   F  E  K  M  R  R  G  G  E  Q  S  G  K  R  T  I  A  G  R  I  V  K  E  S  Y  G  A  A  K  Q  Q  H  T  F  T  :  V  E  V  L  W  S  Q  G  V  K  Q  L  P  P  L  F  P  L  L  V  K  G  R  N  L  Y  K  M  K  T  F  R  Q  :  R  W  R  D  E  E  E  R  L  E  V  L  G  E  K  H  K  R  G  D  A  A  R  F  I  R  A  T  R  K  S  K  S  T  K  P  T  K  A  S  S  K  N  K   : G  N  K  R  Q  K  L  D  H  H  M  R  P  S  K  M  M  Q  T  S  N  V  K  K  H  N  H  S  I  D  E  R  G  K  A  M  A  G  S  K  R  T  K  K  H  Q  R  K  P </first_frame>
            <second_frame>  Y  H  K  L  H  W  *  L  I  F  G  I  S  H  Q  *  H  L  R  I  S  V  S  S  M  L  L  V  L  P  L  L  F  L  I  F  E  C  L  G  W  *  F  H  V  Q  V  T  Y  V  K  E  M  L  Y  Y  F  N  R  K  C  T  R   : S  L  K  R  *  E  G  V  E  N  N  Q  G  R  E  P  L  L  V  G  L  S  R  R  A  M  A  L  P  N  S  S  I  P  L  R :   L  R  C  Y  G  A  K  G  L  N  N  Y  L  H  F  F  H  C  L  *  R  D  E  T  F  I  R  *  R  L  S  D  R :   D  G  G  M  K  R  K  D  *  K  C  S  E  R  S  T  N  V  E  M  Q  R  D  L  L  E  Q  Q  E  N  Q  N  Q  Q  S  R  Q  K  H  P  L  K  T  K  :  V  T  S  A  R  N  L  I  I  I  *  G  Q  A  K  *  C  R  Q  A  M  *  R  N  I  I  I  L  L  M  N  V  G  K  Q  W  Q  E  V  K  E  R  K  N  I  S  E  S   </second_frame>
            <third_frame>   T  I  N  C  T  G  S  *  Y  L  A  S  A  I  N  D  T  S  G  S  L  F  H  L  C  F  L  Y  F  P  F  C  F  *  S  L  S  V  *  V  G  D  S  M  C  R  *  R  M  *  R  R  C  C  I  I  S  T  E  S  V  Q  E  :  V  *  K  D  E  K  G  W  R  T  I  R  E  E  N  H  C  W  *  D  C  Q  G  E  L  W  R  C  Q  T  A  A  Y  L  Y   : G  *  G  V  M  E  P  R  G  *  T  I  T  S  T  F  S  I  A  C  E  G  T  K  P  L  *  D  E  D  F  Q  T   : E  M  E  G  *  R  G  K  T  R  S  A  R  R  E  A  Q  T  W  R  C  S  E  I  Y  *  S  N  K  K  I  K  I  N  K  A  D  K  S  I  L  *  K  Q  R :   *  Q  A  P  E  T  *  S  S  Y  E  A  K  Q  N  D  A  D  K  Q  C  K  E  T  *  S  F  Y  *  *  T  W  E  S  N  G  R  K  *  K  N  E  K  T  S  A  K  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98540" stop="98619"/>
                    <exon start="98711" stop="98816"/>
                    <exon start="99025" stop="99123"/>
                    <exon start="99208" stop="99340"/>
                    <exon start="99439" stop="99584"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFRLVIPCAGDVCKGDVVLFQQKVYKKFEKMRRGGEQSGKRTIAGRIVKESYGAAKQQHTFTVEVLWSQGVKQLPPLFPLLVKGRNLYKMKTFRQRWRDEEERLEVLGEKHKRGDAARFIRATRKSKSTKPTKASSKNKGNKRQKLDHHMRPSKMMQTSNVKKHNHSIDERGKAMAGSKRTKKHQRKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="100194" PGL_stop="99846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100194" e_stop="99846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="100194" e_stop="99846" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100194" stop="99846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTACTTTAAAAAAATAAAAATAAAAAAATATCAATTTAAGACGAAACACTTCTGCAAATTTCTGTACATATGTTTGAAATTCGACATTTACTACAAGGCAATGTTCCAAATGTCAGTTTAAGACACCTTGCACTATTTTGTTTATGTAAACCCCTTGCTGCTGCTATGTGCAGAGCACAAGTTTGTGTGTAAGAGAAACAAAAAGCTAAGAGTTCCATCTACGTTCATAGTTTACAAATGGGATTGAGTCAGATGATCTATCAATACCCAACATGCCAGGGGGATGCGGATAATTGTTAGACTGAGATACATACCTAGCGTATGAAGAATTTGGATAACTTCCATG</gDNA_template>
            <first_frame> L  V  L  *  K  N  K  N  K  K  I  S  I  *  D  E  T  L  L  Q  I  S  V  H  M  F  E  I  R  H  L  L  Q  G  N  V  P  N  V  S  L  R  H  L  A  L  F  C  L  C  K  P  L  A  A  A  M  C  R  A  Q  V  C  V  *  E  K  Q  K  A  K  S  S  I  Y  V  H  S  L  Q  M  G  L  S  Q  M  I  Y  Q  Y  P  T  C  Q  G  D  A  D  N  C  *  T  E  I  H  T  *  R  M  K  N  L  D  N  F  H  </first_frame>
            <second_frame>  L  Y  F  K  K  I  K  I  K  K  Y  Q  F  K  T  K  H  F  C  K  F  L  Y  I  C  L  K  F  D  I  Y  Y  K  A  M  F  Q  M  S  V  *  D  T  L  H  Y  F  V  Y  V  N  P  L  L  L  L  C  A  E  H  K  F  V  C  K  R  N  K  K  L  R  V  P  S  T  F  I  V  Y  K  W  D  *  V  R  *  S  I  N  T  Q  H  A  R  G  M  R  I  I  V  R  L  R  Y  I  P  S  V  *  R  I  W  I  T  S  M </second_frame>
            <third_frame>   C  T  L  K  K  *  K  *  K  N  I  N  L  R  R  N  T  S  A  N  F  C  T  Y  V  *  N  S  T  F  T  T  R  Q  C  S  K  C  Q  F  K  T  P  C  T  I  L  F  M  *  T  P  C  C  C  Y  V  Q  S  T  S  L  C  V  R  E  T  K  S  *  E  F  H  L  R  S  *  F  T  N  G  I  E  S  D  D  L  S  I  P  N  M  P  G  G  C  G  *  L  L  D  *  D  T  Y  L  A  Y  E  E  F  G  *  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="99950" PGL_stop="100156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99950" e_stop="100156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99950" e_stop="100156" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99950" stop="100156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCATTTGTAAACTATGAACGTAGATGGAACTCTTAGCTTTTTGTTTCTCTTACACACAAACTTGTGCTCTGCACATAGCAGCAGCAAGGGGTTTACATAAACAAAATAGTGCAAGGTGTCTTAAACTGACATTTGGAACATTGCCTTGTAGTAAATGTCGAATTTCAAACATATGTACAGAAATTTGCAGAAGTGTTTCGTCTTAA</gDNA_template>
            <first_frame> P  I  C  K  L  *  T  *  M  E  L  L  A  F  C  F  S  Y  T  Q  T  C  A  L  H  I  A  A  A  R  G  L  H  K  Q  N  S  A  R  C  L  K  L  T  F  G  T  L  P  C  S  K  C  R  I  S  N  I  C  T  E  I  C  R  S  V  S  S  * </first_frame>
            <second_frame>  P  F  V  N  Y  E  R  R  W  N  S  *  L  F  V  S  L  T  H  K  L  V  L  C  T  *  Q  Q  Q  G  V  Y  I  N  K  I  V  Q  G  V  L  N  *  H  L  E  H  C  L  V  V  N  V  E  F  Q  T  Y  V  Q  K  F  A  E  V  F  R  L   </second_frame>
            <third_frame>   H  L  *  T  M  N  V  D  G  T  L  S  F  L  F  L  L  H  T  N  L  C  S  A  H  S  S  S  K  G  F  T  *  T  K  *  C  K  V  S  *  T  D  I  W  N  I  A  L  *  *  M  S  N  F  K  H  M  Y  R  N  L  Q  K  C  F  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="110583" PGL_stop="119952"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110602" e_stop="110693"/>
            <exon e_start="119061" e_stop="119166"/>
            <exon e_start="119363" e_stop="119952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110602" e_stop="110693" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.934">
            <gDNA_intron_boundary i_start="110694" i_stop="119060" i_length="8367"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119061" e_stop="119166" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="119167" i_stop="119362" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="119363" e_stop="119952" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110602" stop="110693"/>
              <exon start="119061" stop="119166"/>
              <exon start="119363" stop="119627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110605" stop="110693"/>
              <exon start="119061" stop="119166"/>
              <exon start="119363" stop="119952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCAACAAGTGCTTTGTCTAATACATTACACCAAGTTTGAGAAAAACAAGATCCAG : CGGATGAAAATACAACAAAAAAAGAGGCAGCGCTGGATTGTCAATTTCTCCTCAACAATAGCTCTCTCTAATACATTAGAGCAAGTTGAAGAAAATATACATCAAG : TTAAAAGTGGAAGGAAGAACGAGAGAACAAAGAACAGACCTTTTTTTAAATCTCCATCTGTTAGACTCGTAAATTACTTGATCTAATTACGTACAAACATGTCAAGGACTTGGGCATTGGTCTTGACATGAATGAGGGCAAAACAGTGCAACACAGGTTCAAGGTGTTTGGGTGTTGGCAAGGCAACTTGAACATGCAAGGCTTAAGTGCGGGCTAGAGTCATCGGCAAGGCAGCGTGTTGGCTTGACAAGGCAAAACTGTGAAGACTTGACGATGGTAAGAACAAAGGCATTCCACGTAAATTGCTGAAATAAAACCAAGTGTTGGAGGACAACTAAAATATTCTAAGTGTTGGAAGCTGGCTGAAATAATCTAAGTGTTGGAATGTAGCCTGAAATATTCTAAGTGTTAAAATATTAATATTTCGTGTGGATAAGGATGTAATTTAAATTAGAGTCTATCTGTTAGAAATATATCTGTTGGAAACTTAGTTTGAATCTTGTGATGACAAGTGTCGGACATGTGTCATTTGTAACTGCCGCATGTAACTGCCATGTGCAGAAATTTTAATAAGGGTGGAAATTTTGTTT</gDNA_template>
            <first_frame> E  E  K  S  L  P  M  D  C  Q  F  L  L  N  K  C  F  V  *  Y  I  T  P  S  L  R  K  T  R  S  S :   G  *  K  Y  N  K  K  R  G  S  A  G  L  S  I  S  P  Q  Q  *  L  S  L  I  H  *  S  K  L  K  K  I  Y  I  K  :  L  K  V  E  G  R  T  R  E  Q  R  T  D  L  F  L  N  L  H  L  L  D  S  *  I  T  *  S  N  Y  V  Q  T  C  Q  G  L  G  H  W  S  *  H  E  *  G  Q  N  S  A  T  Q  V  Q  G  V  W  V  L  A  R  Q  L  E  H  A  R  L  K  C  G  L  E  S  S  A  R  Q  R  V  G  L  T  R  Q  N  C  E  D  L  T  M  V  R  T  K  A  F  H  V  N  C  *  N  K  T  K  C  W  R  T  T  K  I  F  *  V  L  E  A  G  *  N  N  L  S  V  G  M  *  P  E  I  F  *  V  L  K  Y  *  Y  F  V  W  I  R  M  *  F  K  L  E  S  I  C  *  K  Y  I  C  W  K  L  S  L  N  L  V  M  T  S  V  G  H  V  S  F  V  T  A  A  C  N  C  H  V  Q  K  F  *  *  G  W  K  F  C   </first_frame>
            <second_frame>  K  K  S  L  F  Q  W  I  V  N  F  S  S  T  S  A  L  S  N  T  L  H  Q  V  *  E  K  Q  D  P   : A  D  E  N  T  T  K  K  E  A  A  L  D  C  Q  F  L  L  N  N  S  S  L  *  Y  I  R  A  S  *  R  K  Y  T  S  S :   *  K  W  K  E  E  R  E  N  K  E  Q  T  F  F  *  I  S  I  C  *  T  R  K  L  L  D  L  I  T  Y  K  H  V  K  D  L  G  I  G  L  D  M  N  E  G  K  T  V  Q  H  R  F  K  V  F  G  C  W  Q  G  N  L  N  M  Q  G  L  S  A  G  *  S  H  R  Q  G  S  V  L  A  *  Q  G  K  T  V  K  T  *  R  W  *  E  Q  R  H  S  T  *  I  A  E  I  K  P  S  V  G  G  Q  L  K  Y  S  K  C  W  K  L  A  E  I  I  *  V  L  E  C  S  L  K  Y  S  K  C  *  N  I  N  I  S  C  G  *  G  C  N  L  N  *  S  L  S  V  R  N  I  S  V  G  N  L  V  *  I  L  *  *  Q  V  S  D  M  C  H  L  *  L  P  H  V  T  A  M  C  R  N  F  N  K  G  G  N  F  V  </second_frame>
            <third_frame>   R  K  V  S  S  N  G  L  S  I  S  P  Q  Q  V  L  C  L  I  H  Y  T  K  F  E  K  N  K  I  Q  :  R  M  K  I  Q  Q  K  K  R  Q  R  W  I  V  N  F  S  S  T  I  A  L  S  N  T  L  E  Q  V  E  E  N  I  H  Q   : V  K  S  G  R  K  N  E  R  T  K  N  R  P  F  F  K  S  P  S  V  R  L  V  N  Y  L  I  *  L  R  T  N  M  S  R  T  W  A  L  V  L  T  *  M  R  A  K  Q  C  N  T  G  S  R  C  L  G  V  G  K  A  T  *  T  C  K  A  *  V  R  A  R  V  I  G  K  A  A  C  W  L  D  K  A  K  L  *  R  L  D  D  G  K  N  K  G  I  P  R  K  L  L  K  *  N  Q  V  L  E  D  N  *  N  I  L  S  V  G  S  W  L  K  *  S  K  C  W  N  V  A  *  N  I  L  S  V  K  I  L  I  F  R  V  D  K  D  V  I  *  I  R  V  Y  L  L  E  I  Y  L  L  E  T  *  F  E  S  C  D  D  K  C  R  T  C  V  I  C  N  C  R  M  *  L  P  C  A  E  I  L  I  R  V  E  I  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110604" stop="110693"/>
                    <exon start="119061" stop="119166"/>
                    <exon start="119363" stop="119448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKVSSNGLSISPQQVLCLIHYTKFEKNKIQRMKIQQKKRQRWIVNFSSTIALSNTLEQVEENIHQVKSGRKNERTKNRPFFKSPSVRLVNYLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="110583" e_stop="110693"/>
            <exon e_start="119061" e_stop="119166"/>
            <exon e_start="119469" e_stop="119889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110583" e_stop="110693" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.934">
            <gDNA_intron_boundary i_start="110694" i_stop="119060" i_length="8367"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119061" e_stop="119166" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.955">
            <gDNA_intron_boundary i_start="119167" i_stop="119468" i_length="302"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="119469" e_stop="119889" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110583" stop="110693"/>
              <exon start="119061" stop="119166"/>
              <exon start="119469" stop="119889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGGCAGTTGACTTTGCTGAAGAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCAACAAGTGCTTTGTCTAATACATTACACCAAGTTTGAGAAAAACAAGATCCAG : CGGATGAAAATACAACAAAAAAAGAGGCAGCGCTGGATTGTCAATTTCTCCTCAACAATAGCTCTCTCTAATACATTAGAGCAAGTTGAAGAAAATATACATCAAG : GACTTGGGCATTGGTCTTGACATGAATGAGGGCAAAACAGTGCAACACAGGTTCAAGGTGTTTGGGTGTTGGCAAGGCAACTTGAACATGCAAGGCTTAAGTGCGGGCTAGAGTCATCGGCAAGGCAGCGTGTTGGCTTGACAAGGCAAAACTGTGAAGACTTGACGATGGTAAGAACAAAGGCATTCCACGTAAATTGCTGAAATAAAACCAAGTGTTGGAGGACAACTAAAATATTCTAAGTGTTGGAAGCTGGCTGAAATAATCTAAGTGTTGGAATGTAGCCTGAAATATTCTAAGTGTTAAAATATTAATATTTCGTGTGGATAAGGATGTAATTTAAATTAGAGTCTATCTGTTAGAAATATATCTGTTGGAAACTTAGTTTGAATCTTGTGATGACAAGTGTCGGACATGTGTC</gDNA_template>
            <first_frame> T  G  S  *  L  C  *  R  K  V  S  S  N  G  L  S  I  S  P  Q  Q  V  L  C  L  I  H  Y  T  K  F  E  K  N  K  I  Q  :  R  M  K  I  Q  Q  K  K  R  Q  R  W  I  V  N  F  S  S  T  I  A  L  S  N  T  L  E  Q  V  E  E  N  I  H  Q   : G  L  G  H  W  S  *  H  E  *  G  Q  N  S  A  T  Q  V  Q  G  V  W  V  L  A  R  Q  L  E  H  A  R  L  K  C  G  L  E  S  S  A  R  Q  R  V  G  L  T  R  Q  N  C  E  D  L  T  M  V  R  T  K  A  F  H  V  N  C  *  N  K  T  K  C  W  R  T  T  K  I  F  *  V  L  E  A  G  *  N  N  L  S  V  G  M  *  P  E  I  F  *  V  L  K  Y  *  Y  F  V  W  I  R  M  *  F  K  L  E  S  I  C  *  K  Y  I  C  W  K  L  S  L  N  L  V  M  T  S  V  G  H  V   </first_frame>
            <second_frame>  L  A  V  D  F  A  E  E  K  S  L  P  M  D  C  Q  F  L  L  N  K  C  F  V  *  Y  I  T  P  S  L  R  K  T  R  S  S :   G  *  K  Y  N  K  K  R  G  S  A  G  L  S  I  S  P  Q  Q  *  L  S  L  I  H  *  S  K  L  K  K  I  Y  I  K  :  D  L  G  I  G  L  D  M  N  E  G  K  T  V  Q  H  R  F  K  V  F  G  C  W  Q  G  N  L  N  M  Q  G  L  S  A  G  *  S  H  R  Q  G  S  V  L  A  *  Q  G  K  T  V  K  T  *  R  W  *  E  Q  R  H  S  T  *  I  A  E  I  K  P  S  V  G  G  Q  L  K  Y  S  K  C  W  K  L  A  E  I  I  *  V  L  E  C  S  L  K  Y  S  K  C  *  N  I  N  I  S  C  G  *  G  C  N  L  N  *  S  L  S  V  R  N  I  S  V  G  N  L  V  *  I  L  *  *  Q  V  S  D  M  C  </second_frame>
            <third_frame>   W  Q  L  T  L  L  K  K  S  L  F  Q  W  I  V  N  F  S  S  T  S  A  L  S  N  T  L  H  Q  V  *  E  K  Q  D  P   : A  D  E  N  T  T  K  K  E  A  A  L  D  C  Q  F  L  L  N  N  S  S  L  *  Y  I  R  A  S  *  R  K  Y  T  S  R :   T  W  A  L  V  L  T  *  M  R  A  K  Q  C  N  T  G  S  R  C  L  G  V  G  K  A  T  *  T  C  K  A  *  V  R  A  R  V  I  G  K  A  A  C  W  L  D  K  A  K  L  *  R  L  D  D  G  K  N  K  G  I  P  R  K  L  L  K  *  N  Q  V  L  E  D  N  *  N  I  L  S  V  G  S  W  L  K  *  S  K  C  W  N  V  A  *  N  I  L  S  V  K  I  L  I  F  R  V  D  K  D  V  I  *  I  R  V  Y  L  L  E  I  Y  L  L  E  T  *  F  E  S  C  D  D  K  C  R  T  C  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110604" stop="110693"/>
                    <exon start="119061" stop="119166"/>
                    <exon start="119469" stop="119488"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKVSSNGLSISPQQVLCLIHYTKFEKNKIQRMKIQQKKRQRWIVNFSSTIALSNTLEQVEENIHQGLGHWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="132570" PGL_stop="131356"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132570" e_stop="131356"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="132570" e_stop="131356" e_length="1215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132570" stop="131765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132569" stop="131994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132147" stop="131356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542354" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGACTAACTGGCCTGAAACTATAACTTATGTGATTAACAGCATCAAGGGAGGAAGAATTGTTTGTGAGAATCTGAGGCAGTTCATCCAAGTTGAGGTAATCTTGGCAATCAGTAGCTTATCAATAAACTTCATACTGGTTATAGTAGACGGAGATGCCCCGTTAACAATATTTCAGTTGGTATGGGTTAACCTTCTTGTTACATTTATTGGAGGGCCAGCTTTGCTAATTACTCTACTAAGGGATGAGCTTTCTATCAGACCAAGAAAACCGCCAATTACCAAAGCTATGTGGAGAAACATACTTTTTCAAGCTTCTTATCAGACTGGCATTTTTGTATTCCTTCAACTCAAAGGAAGTGCAATACTGGGCATCACTCCAAAAGTTAACAGATCTATAGTCTTTAACGGGTTCGCTCTGTGCCAGCTTTTTAACATTTTCAGTGCAAGGGATTTGGAGCAGAAGAATTTTTTCAAAGGTTTTGGTCAAAATTACTTGTTCTGGGCATTGTCTGTGCTCTATCTTGTGTTGCAGTTTGGATTCATTGAAGTAGAGGCTGTCTTTGTCTTTACCAACACGGCACGACTGAATTGGAAGCAATGGGTTGAATCCATTTTAATTGGAGCTGCTACATGGTTGGTTGATGTGATAGTAAAATGGGCATCACAATACATAAAGATAGACAAATATTGTGATTGTGGAGGTCTTTACCTAGCTAGAAACTGGTTACAGTATTGGTTTATCAGGATCAATTGCTGTTACTGTGGACAAAGAAGTACACCAAATCCAACTCTTGCTTCCTTGGATTATTCGAGATCCACTAGCGGAAAGGTAATTCAAAAAATTTATCCATACTGCCTAATTACAGTTACAGTTCTTCCCTAAAATTTTGGATTCAAGTTGTAGCTGTTGTTCTTTTGCAGGGCTGGATAACAAATATCACACGTCGTGTTAAACCAACGAAGCATAGAGCTAATACTTGTTGCAGTCGCTTCAATTTTTAGTAGATAGTTTCCTCTGTTCTCTATAGACGGTTAGATACAGTTGGAGCAACACTAAAGTTATCTCGATGTGACCCATAGCTTATGGGTAAATCAGCTGACCCGTAGATTATGGGTTAGAGCAGTACTAAAATCAGCCTTGTATCAGGGTACACACCCTTGAAGGGTGTCCTTTATAGTTAGTTTGTGTTAATTAATTTCATCAAGTTTTTCG</gDNA_template>
            <first_frame> V  T  N  W  P  E  T  I  T  Y  V  I  N  S  I  K  G  G  R  I  V  C  E  N  L  R  Q  F  I  Q  V  E  V  I  L  A  I  S  S  L  S  I  N  F  I  L  V  I  V  D  G  D  A  P  L  T  I  F  Q  L  V  W  V  N  L  L  V  T  F  I  G  G  P  A  L  L  I  T  L  L  R  D  E  L  S  I  R  P  R  K  P  P  I  T  K  A  M  W  R  N  I  L  F  Q  A  S  Y  Q  T  G  I  F  V  F  L  Q  L  K  G  S  A  I  L  G  I  T  P  K  V  N  R  S  I  V  F  N  G  F  A  L  C  Q  L  F  N  I  F  S  A  R  D  L  E  Q  K  N  F  F  K  G  F  G  Q  N  Y  L  F  W  A  L  S  V  L  Y  L  V  L  Q  F  G  F  I  E  V  E  A  V  F  V  F  T  N  T  A  R  L  N  W  K  Q  W  V  E  S  I  L  I  G  A  A  T  W  L  V  D  V  I  V  K  W  A  S  Q  Y  I  K  I  D  K  Y  C  D  C  G  G  L  Y  L  A  R  N  W  L  Q  Y  W  F  I  R  I  N  C  C  Y  C  G  Q  R  S  T  P  N  P  T  L  A  S  L  D  Y  S  R  S  T  S  G  K  V  I  Q  K  I  Y  P  Y  C  L  I  T  V  T  V  L  P  *  N  F  G  F  K  L  *  L  L  F  F  C  R  A  G  *  Q  I  S  H  V  V  L  N  Q  R  S  I  E  L  I  L  V  A  V  A  S  I  F  S  R  *  F  P  L  F  S  I  D  G  *  I  Q  L  E  Q  H  *  S  Y  L  D  V  T  H  S  L  W  V  N  Q  L  T  R  R  L  W  V  R  A  V  L  K  S  A  L  Y  Q  G  T  H  P  *  R  V  S  F  I  V  S  L  C  *  L  I  S  S  S  F  S </first_frame>
            <second_frame>  *  L  T  G  L  K  L  *  L  M  *  L  T  A  S  R  E  E  E  L  F  V  R  I  *  G  S  S  S  K  L  R  *  S  W  Q  S  V  A  Y  Q  *  T  S  Y  W  L  *  *  T  E  M  P  R  *  Q  Y  F  S  W  Y  G  L  T  F  L  L  H  L  L  E  G  Q  L  C  *  L  L  Y  *  G  M  S  F  L  S  D  Q  E  N  R  Q  L  P  K  L  C  G  E  T  Y  F  F  K  L  L  I  R  L  A  F  L  Y  S  F  N  S  K  E  V  Q  Y  W  A  S  L  Q  K  L  T  D  L  *  S  L  T  G  S  L  C  A  S  F  L  T  F  S  V  Q  G  I  W  S  R  R  I  F  S  K  V  L  V  K  I  T  C  S  G  H  C  L  C  S  I  L  C  C  S  L  D  S  L  K  *  R  L  S  L  S  L  P  T  R  H  D  *  I  G  S  N  G  L  N  P  F  *  L  E  L  L  H  G  W  L  M  *  *  *  N  G  H  H  N  T  *  R  *  T  N  I  V  I  V  E  V  F  T  *  L  E  T  G  Y  S  I  G  L  S  G  S  I  A  V  T  V  D  K  E  V  H  Q  I  Q  L  L  L  P  W  I  I  R  D  P  L  A  E  R  *  F  K  K  F  I  H  T  A  *  L  Q  L  Q  F  F  P  K  I  L  D  S  S  C  S  C  C  S  F  A  G  L  D  N  K  Y  H  T  S  C  *  T  N  E  A  *  S  *  Y  L  L  Q  S  L  Q  F  L  V  D  S  F  L  C  S  L  *  T  V  R  Y  S  W  S  N  T  K  V  I  S  M  *  P  I  A  Y  G  *  I  S  *  P  V  D  Y  G  L  E  Q  Y  *  N  Q  P  C  I  R  V  H  T  L  E  G  C  P  L  *  L  V  C  V  N  *  F  H  Q  V  F   </second_frame>
            <third_frame>   D  *  L  A  *  N  Y  N  L  C  D  *  Q  H  Q  G  R  K  N  C  L  *  E  S  E  A  V  H  P  S  *  G  N  L  G  N  Q  *  L  I  N  K  L  H  T  G  Y  S  R  R  R  C  P  V  N  N  I  S  V  G  M  G  *  P  S  C  Y  I  Y  W  R  A  S  F  A  N  Y  S  T  K  G  *  A  F  Y  Q  T  K  K  T  A  N  Y  Q  S  Y  V  E  K  H  T  F  S  S  F  L  S  D  W  H  F  C  I  P  S  T  Q  R  K  C  N  T  G  H  H  S  K  S  *  Q  I  Y  S  L  *  R  V  R  S  V  P  A  F  *  H  F  Q  C  K  G  F  G  A  E  E  F  F  Q  R  F  W  S  K  L  L  V  L  G  I  V  C  A  L  S  C  V  A  V  W  I  H  *  S  R  G  C  L  C  L  Y  Q  H  G  T  T  E  L  E  A  M  G  *  I  H  F  N  W  S  C  Y  M  V  G  *  C  D  S  K  M  G  I  T  I  H  K  D  R  Q  I  L  *  L  W  R  S  L  P  S  *  K  L  V  T  V  L  V  Y  Q  D  Q  L  L  L  L  W  T  K  K  Y  T  K  S  N  S  C  F  L  G  L  F  E  I  H  *  R  K  G  N  S  K  N  L  S  I  L  P  N  Y  S  Y  S  S  S  L  K  F  W  I  Q  V  V  A  V  V  L  L  Q  G  W  I  T  N  I  T  R  R  V  K  P  T  K  H  R  A  N  T  C  C  S  R  F  N  F  *  *  I  V  S  S  V  L  Y  R  R  L  D  T  V  G  A  T  L  K  L  S  R  C  D  P  *  L  M  G  K  S  A  D  P  *  I  M  G  *  S  S  T  K  I  S  L  V  S  G  Y  T  P  L  K  G  V  L  Y  S  *  F  V  L  I  N  F  I  K  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132570" stop="131686"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTNWPETITYVINSIKGGRIVCENLRQFIQVEVILAISSLSINFILVIVDGDAPLTIFQLVWVNLLVTFIGGPALLITLLRDELSIRPRKPPITKAMWRNILFQASYQTGIFVFLQLKGSAILGITPKVNRSIVFNGFALCQLFNIFSARDLEQKNFFKGFGQNYLFWALSVLYLVLQFGFIEVEAVFVFTNTARLNWKQWVESILIGAATWLVDVIVKWASQYIKIDKYCDCGGLYLARNWLQYWFIRINCCYCGQRSTPNPTLASLDYSRSTSGKVIQKIYPYCLITVTVLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="134139" PGL_stop="135007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134139" e_stop="134885"/>
            <exon e_start="135002" e_stop="135007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.606" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="134139" e_stop="134885" e_length="747"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.606">
            <gDNA_intron_boundary i_start="134886" i_stop="135001" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="135002" e_stop="135007" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134139" stop="134885"/>
              <exon start="135002" stop="135007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCCTTGACTCCTTCAAAATTGTGAAGTGATTCCAACTTCACATTCTCTTCACTAATTTGTAGGCATTGTTGATGAGTACTTAGATCATGAGGCTGAAGCTCAATCTCATTGTTTGATTGTACAGTATAAACATCAGCCACAGTTTCAACCATCTGGAATTCATCTCCACCACCTTCCGCGTCCTAATTAGACAGAGAGCATATATAATTAATATCATCAATATATAACTTTAAACTATATGCATATATATATGTTTTATATATACATACTCCATGTTTAAGATTGAAGCTGGGAAGAGGAGTATAAAAGGTTGTGGTGGAGGATGATGAGACTCGTGAAAGAGATGCTATTCTTGCTCCAGCTTCAATGAACTTGTAAGTAGATTTGAAAATGAGCGCCGACTTCCTCATGATCAAACTAGATTTACCCAATTCTCCATTCATCAACAGCGGGGAACTTCGCTGAGCTTCAATGTCTGATCCATTATCTTCATGATCCAGCTCCATCATCTTCGCCTTTGATCAGTACATTTTTCTTCTTCTTCTGTATTTATTATAAAATACTAGGAAAGATCACTATGATCTGACACTTAAAAGATTCAGATAGAATAAGATATGATGGTAAGGAACTGATTTTTTTGTATACATATTTATAGGGAAAGAAAAAGGTTGCCATGAAGCTACCTAGAAAGCTCCTAGTCTGCCAAGTTTTTAGTTTTATATAACGCGGTATTGCTGATTTTTCA : AAAAAA</gDNA_template>
            <first_frame> S  P  *  L  L  Q  N  C  E  V  I  P  T  S  H  S  L  H  *  F  V  G  I  V  D  E  Y  L  D  H  E  A  E  A  Q  S  H  C  L  I  V  Q  Y  K  H  Q  P  Q  F  Q  P  S  G  I  H  L  H  H  L  P  R  P  N  *  T  E  S  I  Y  N  *  Y  H  Q  Y  I  T  L  N  Y  M  H  I  Y  M  F  Y  I  Y  I  L  H  V  *  D  *  S  W  E  E  E  Y  K  R  L  W  W  R  M  M  R  L  V  K  E  M  L  F  L  L  Q  L  Q  *  T  C  K  *  I  *  K  *  A  P  T  S  S  *  S  N  *  I  Y  P  I  L  H  S  S  T  A  G  N  F  A  E  L  Q  C  L  I  H  Y  L  H  D  P  A  P  S  S  S  P  L  I  S  T  F  F  F  F  F  C  I  Y  Y  K  I  L  G  K  I  T  M  I  *  H  L  K  D  S  D  R  I  R  Y  D  G  K  E  L  I  F  L  Y  T  Y  L  *  G  K  K  K  V  A  M  K  L  P  R  K  L  L  V  C  Q  V  F  S  F  I  *  R  G  I  A  D  F  S  :  K  K </first_frame>
            <second_frame>  P  L  D  S  F  K  I  V  K  *  F  Q  L  H  I  L  F  T  N  L  *  A  L  L  M  S  T  *  I  M  R  L  K  L  N  L  I  V  *  L  Y  S  I  N  I  S  H  S  F  N  H  L  E  F  I  S  T  T  F  R  V  L  I  R  Q  R  A  Y  I  I  N  I  I  N  I  *  L  *  T  I  C  I  Y  I  C  F  I  Y  T  Y  S  M  F  K  I  E  A  G  K  R  S  I  K  G  C  G  G  G  *  *  D  S  *  K  R  C  Y  S  C  S  S  F  N  E  L  V  S  R  F  E  N  E  R  R  L  P  H  D  Q  T  R  F  T  Q  F  S  I  H  Q  Q  R  G  T  S  L  S  F  N  V  *  S  I  I  F  M  I  Q  L  H  H  L  R  L  *  S  V  H  F  S  S  S  S  V  F  I  I  K  Y  *  E  R  S  L  *  S  D  T  *  K  I  Q  I  E  *  D  M  M  V  R  N  *  F  F  C  I  H  I  Y  R  E  R  K  R  L  P  *  S  Y  L  E  S  S  *  S  A  K  F  L  V  L  Y  N  A  V  L  L  I  F  Q :   K   </second_frame>
            <third_frame>   P  L  T  P  S  K  L  *  S  D  S  N  F  T  F  S  S  L  I  C  R  H  C  *  *  V  L  R  S  *  G  *  S  S  I  S  L  F  D  C  T  V  *  T  S  A  T  V  S  T  I  W  N  S  S  P  P  P  S  A  S  *  L  D  R  E  H  I  *  L  I  S  S  I  Y  N  F  K  L  Y  A  Y  I  Y  V  L  Y  I  H  T  P  C  L  R  L  K  L  G  R  G  V  *  K  V  V  V  E  D  D  E  T  R  E  R  D  A  I  L  A  P  A  S  M  N  L  *  V  D  L  K  M  S  A  D  F  L  M  I  K  L  D  L  P  N  S  P  F  I  N  S  G  E  L  R  *  A  S  M  S  D  P  L  S  S  *  S  S  S  I  I  F  A  F  D  Q  Y  I  F  L  L  L  L  Y  L  L  *  N  T  R  K  D  H  Y  D  L  T  L  K  R  F  R  *  N  K  I  *  W  *  G  T  D  F  F  V  Y  I  F  I  G  K  E  K  G  C  H  E  A  T  *  K  A  P  S  L  P  S  F  *  F  Y  I  T  R  Y  C  *  F  F   : K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="137951" PGL_stop="141650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137951" e_stop="138282"/>
            <exon e_start="138377" e_stop="138486"/>
            <exon e_start="140081" e_stop="140246"/>
            <exon e_start="141261" e_stop="141361"/>
            <exon e_start="141465" e_stop="141537"/>
            <exon e_start="141636" e_stop="141650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.685" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.379" acc_prob="0.686" e_score="0.986"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="137951" e_stop="138282" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="138283" i_stop="138376" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138377" e_stop="138486" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.950">
            <gDNA_intron_boundary i_start="138487" i_stop="140080" i_length="1594"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="140081" e_stop="140246" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.700" acc_prob="0.892">
            <gDNA_intron_boundary i_start="140247" i_stop="141260" i_length="1014"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="141261" e_stop="141361" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.685" acc_prob="0.965">
            <gDNA_intron_boundary i_start="141362" i_stop="141464" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="141465" e_stop="141537" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.379" acc_prob="0.686">
            <gDNA_intron_boundary i_start="141538" i_stop="141635" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.933">
            <gDNA_exon_boundary e_start="141636" e_stop="141650" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137951" stop="138282"/>
              <exon start="138377" stop="138486"/>
              <exon start="140081" stop="140246"/>
              <exon start="141261" stop="141361"/>
              <exon start="141465" stop="141537"/>
              <exon start="141636" stop="141650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCATCAGATTATTCCTCTCTTCAACCCCTTTTCTGTAGATTAATTAATATCAAAGACTAAATTTCATCATCAAAGCTTTTCAGGATCTGATCTGAAAATTTTGATCCGTTCATTTTCATGATCTGGATCTGAGACCTCACTTCATCGTTGTGTTCTTAGTTGAAATTGGTCTAGGTTAGTTAAATTAGGGTGGATCAATGGAGTGGGCGACTCTACAGCATTTAGATCTCCGCCATGTTGGTCGGAGTTCGAAGTCGTTACAGCCTCACGCCGCCGCATTTCATCCCACTCAAGCGCTTCTCGCTGTTGCCGTGGGAAGCCAAATAATTG : AATTTGATGCATATACCGGAAGCAAGATTGCTTCCATAGACATTGGTTCCCCTGTTGTTCGAATGGCTTATAGTCCAACAAGTGGACATTGTGTAATTGCTATTCTTGAG : GATTGTACAATGCGTTCGTGTGATTTTGATGCAGAGCAAACATGTGTTTTACATTCACCTGAGAAAAGGACCGAACGCATTTCTTCTGATACTGAAGTTCACCTTGCATTGACTCCTCTTCAACCTGTTGTATTTTTTGGTTTCCATCGTAGGATGAGTGTTACAG : TTGTTGGAACTGTGGAAGGTGGGAAGGCGCCAACAAAAATAAAGACTGACCTGAAGAAACCTATCGTTAATCTTGCTTGCCATCCTCGACTACCAGTTCTG : TATGTAGCTTACGCGGAAGGGTTGATTCGAGCTTATAACATCCATACATATGCTGTACACTACACTTTACAAT : TGGATAATACTATCA</gDNA_template>
            <first_frame> S  H  Q  I  I  P  L  F  N  P  F  S  V  D  *  L  I  S  K  T  K  F  H  H  Q  S  F  S  G  S  D  L  K  I  L  I  R  S  F  S  *  S  G  S  E  T  S  L  H  R  C  V  L  S  *  N  W  S  R  L  V  K  L  G  W  I  N  G  V  G  D  S  T  A  F  R  S  P  P  C  W  S  E  F  E  V  V  T  A  S  R  R  R  I  S  S  H  S  S  A  S  R  C  C  R  G  K  P  N  N  * :   I  *  C  I  Y  R  K  Q  D  C  F  H  R  H  W  F  P  C  C  S  N  G  L  *  S  N  K  W  T  L  C  N  C  Y  S  *   : G  L  Y  N  A  F  V  *  F  *  C  R  A  N  M  C  F  T  F  T  *  E  K  D  R  T  H  F  F  *  Y  *  S  S  P  C  I  D  S  S  S  T  C  C  I  F  W  F  P  S  *  D  E  C  Y  S :   C  W  N  C  G  R  W  E  G  A  N  K  N  K  D  *  P  E  E  T  Y  R  *  S  C  L  P  S  S  T  T  S  S   : V  C  S  L  R  G  R  V  D  S  S  L  *  H  P  Y  I  C  C  T  L  H  F  T  I :   G  *  Y  Y   </first_frame>
            <second_frame>  R  I  R  L  F  L  S  S  T  P  F  L  *  I  N  *  Y  Q  R  L  N  F  I  I  K  A  F  Q  D  L  I  *  K  F  *  S  V  H  F  H  D  L  D  L  R  P  H  F  I  V  V  F  L  V  E  I  G  L  G  *  L  N  *  G  G  S  M  E  W  A  T  L  Q  H  L  D  L  R  H  V  G  R  S  S  K  S  L  Q  P  H  A  A  A  F  H  P  T  Q  A  L  L  A  V  A  V  G  S  Q  I  I   : E  F  D  A  Y  T  G  S  K  I  A  S  I  D  I  G  S  P  V  V  R  M  A  Y  S  P  T  S  G  H  C  V  I  A  I  L  E  :  D  C  T  M  R  S  C  D  F  D  A  E  Q  T  C  V  L  H  S  P  E  K  R  T  E  R  I  S  S  D  T  E  V  H  L  A  L  T  P  L  Q  P  V  V  F  F  G  F  H  R  R  M  S  V  T   : V  V  G  T  V  E  G  G  K  A  P  T  K  I  K  T  D  L  K  K  P  I  V  N  L  A  C  H  P  R  L  P  V  L  :  Y  V  A  Y  A  E  G  L  I  R  A  Y  N  I  H  T  Y  A  V  H  Y  T  L  Q   : L  D  N  T  I  </second_frame>
            <third_frame>   A  S  D  Y  S  S  L  Q  P  L  F  C  R  L  I  N  I  K  D  *  I  S  S  S  K  L  F  R  I  *  S  E  N  F  D  P  F  I  F  M  I  W  I  *  D  L  T  S  S  L  C  S  *  L  K  L  V  *  V  S  *  I  R  V  D  Q  W  S  G  R  L  Y  S  I  *  I  S  A  M  L  V  G  V  R  S  R  Y  S  L  T  P  P  H  F  I  P  L  K  R  F  S  L  L  P  W  E  A  K  *  L  :  N  L  M  H  I  P  E  A  R  L  L  P  *  T  L  V  P  L  L  F  E  W  L  I  V  Q  Q  V  D  I  V  *  L  L  F  L  R :   I  V  Q  C  V  R  V  I  L  M  Q  S  K  H  V  F  Y  I  H  L  R  K  G  P  N  A  F  L  L  I  L  K  F  T  L  H  *  L  L  F  N  L  L  Y  F  L  V  S  I  V  G  *  V  L  Q  :  L  L  E  L  W  K  V  G  R  R  Q  Q  K  *  R  L  T  *  R  N  L  S  L  I  L  L  A  I  L  D  Y  Q  F  C :   M  *  L  T  R  K  G  *  F  E  L  I  T  S  I  H  M  L  Y  T  T  L  Y  N  :  W  I  I  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138141" stop="138282"/>
                    <exon start="138377" stop="138486"/>
                    <exon start="140081" stop="140246"/>
                    <exon start="141261" stop="141361"/>
                    <exon start="141465" stop="141537"/>
                    <exon start="141636" stop="141649"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSMEWATLQHLDLRHVGRSSKSLQPHAAAFHPTQALLAVAVGSQIIEFDAYTGSKIASIDIGSPVVRMAYSPTSGHCVIAILEDCTMRSCDFDAEQTCVLHSPEKRTERISSDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGKAPTKIKTDLKKPIVNLACHPRLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="143558" PGL_stop="149175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143558" e_stop="143687"/>
            <exon e_start="143761" e_stop="143860"/>
            <exon e_start="145885" e_stop="145981"/>
            <exon e_start="147071" e_stop="147122"/>
            <exon e_start="149091" e_stop="149175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.043" acc_prob="0.990" e_score="0.946"/>
          <exon-intron don_prob="0.980" acc_prob="0.939" e_score="0.980"/>
          <exon-intron don_prob="0.989" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="143558" e_stop="143687" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.043" acc_prob="0.990">
            <gDNA_intron_boundary i_start="143688" i_stop="143760" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="143761" e_stop="143860" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.939">
            <gDNA_intron_boundary i_start="143861" i_stop="145884" i_length="2024"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="145885" e_stop="145981" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.774">
            <gDNA_intron_boundary i_start="145982" i_stop="147070" i_length="1089"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="147071" e_stop="147122" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.934">
            <gDNA_intron_boundary i_start="147123" i_stop="149090" i_length="1968"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="149091" e_stop="149175" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143558" stop="143687"/>
              <exon start="143761" stop="143860"/>
              <exon start="145885" stop="145981"/>
              <exon start="147071" stop="147122"/>
              <exon start="149091" stop="149175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGCAATTGAATCCATTGACATCCCGAGAATTCTATCTCAGCAAGGAGGAGAAGCAGTTTATCCACTTCCTCGAATCAGGGCTTTAGAAGTTCACCCAAAATTAAATCTATCTGCATTGCTTTTTATG : AATTTGACTGGTGCTGACAATAGAAAAAATAGAGCTGCTTTTACTAGGGATGGAAGGAAACAATTATTTGCAGTTTTGCAAGGTGCAAGGGGATCTTCAG : CCTCTGTCTTGAAGGAAAAGCTCTCAGCCCTTGGTTCATCCGGAATATTAGCTGATCATCAACTTAAAGCGCAGCTGCAAGAGCATTATTTGAAAGG : ACAAAGTCAGCTCACAATTTCGGATATAGCGAGAAAGGCTTTTCTTTATAGC : CATTTTATGGAAGGTCATGCAAAAACTGTTCCAATTTCCCGGTTACCTCTCATCACAATTCTGGATACCAAACATTATTTGAGAG</gDNA_template>
            <first_frame> C  S  N  *  I  H  *  H  P  E  N  S  I  S  A  R  R  R  S  S  L  S  T  S  S  N  Q  G  F  R  S  S  P  K  I  K  S  I  C  I  A  F  Y   : E  F  D  W  C  *  Q  *  K  K  *  S  C  F  Y  *  G  W  K  E  T  I  I  C  S  F  A  R  C  K  G  I  F  S :   L  C  L  E  G  K  A  L  S  P  W  F  I  R  N  I  S  *  S  S  T  *  S  A  A  A  R  A  L  F  E  R  :  T  K  S  A  H  N  F  G  Y  S  E  K  G  F  S  L  *   : P  F  Y  G  R  S  C  K  N  C  S  N  F  P  V  T  S  H  H  N  S  G  Y  Q  T  L  F  E   </first_frame>
            <second_frame>  A  A  I  E  S  I  D  I  P  R  I  L  S  Q  Q  G  G  E  A  V  Y  P  L  P  R  I  R  A  L  E  V  H  P  K  L  N  L  S  A  L  L  F  M  :  N  L  T  G  A  D  N  R  K  N  R  A  A  F  T  R  D  G  R  K  Q  L  F  A  V  L  Q  G  A  R  G  S  S   : A  S  V  L  K  E  K  L  S  A  L  G  S  S  G  I  L  A  D  H  Q  L  K  A  Q  L  Q  E  H  Y  L  K  G :   Q  S  Q  L  T  I  S  D  I  A  R  K  A  F  L  Y  S  :  H  F  M  E  G  H  A  K  T  V  P  I  S  R  L  P  L  I  T  I  L  D  T  K  H  Y  L  R  </second_frame>
            <third_frame>   Q  Q  L  N  P  L  T  S  R  E  F  Y  L  S  K  E  E  K  Q  F  I  H  F  L  E  S  G  L  *  K  F  T  Q  N  *  I  Y  L  H  C  F  L  * :   I  *  L  V  L  T  I  E  K  I  E  L  L  L  L  G  M  E  G  N  N  Y  L  Q  F  C  K  V  Q  G  D  L  Q  :  P  L  S  *  R  K  S  S  Q  P  L  V  H  P  E  Y  *  L  I  I  N  L  K  R  S  C  K  S  I  I  *  K   : D  K  V  S  S  Q  F  R  I  *  R  E  R  L  F  F  I  A :   I  L  W  K  V  M  Q  K  L  F  Q  F  P  G  Y  L  S  S  Q  F  W  I  P  N  I  I  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143559" stop="143687"/>
                    <exon start="143761" stop="143860"/>
                    <exon start="145885" stop="145981"/>
                    <exon start="147071" stop="147122"/>
                    <exon start="149091" stop="149174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAIESIDIPRILSQQGGEAVYPLPRIRALEVHPKLNLSALLFMNLTGADNRKNRAAFTRDGRKQLFAVLQGARGSSASVLKEKLSALGSSGILADHQLKAQLQEHYLKGQSQLTISDIARKAFLYSHFMEGHAKTVPISRLPLITILDTKHYLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 153 chains have been computed
$ 
$ memory statistics:
$ 523816 bytes spliced alignments in total
$ 85 spliced alignments have been stored
$ 6162 bytes was the average size of a spliced alignment
$ 29504 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1639 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 182 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:07:56
-->
