<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:08:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601685" ref_strand="+" ref_description="SGN-U601685 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgggcaggtacacaatctggttctcctgaagggccacttcattttactggttcaggttcagccaaaggggtgtctgtgaatgaagaggaggataataaatcggaaagctataattggaatggacagcttcacaagagtattgaagggtcaactataagatcaagtagccattaattttgcagctacagaaataggacagaaacaaaacataacaaataacttcacaggaaatagggaatctgctgatattaacatatgtttgtttgttgatttacaatacattgtgagtaggactaatgatttggatatatagtctgatactaatacaagctggtagggaccagtgaacctacagagggaatatcaattttacaaactagtatattgaatatttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="912" stop="1903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1206" g_stop="1603" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U601685" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1206" e_stop="1603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATGGTACACAATCTGGTTCTCCTGAAGGGCCACTTCATTTTACTGGTTCAGGTTCAGCCAAAGGGGTGTCTGTGAATGAAGAAGAGGATAATAAATCGGAAAGCTATAATTGGAATGGACAGCTTCACAAGAGCATTGAAGGGTCAACTATAAGATCAAGTAGCCATTAATTTTGCAGCTACAGAAATAGGACAGAAACAAAACATAACAAATAACTTCACAGGAAATAGGGAATCTGCTGATATTAACATATGTTTGTTTGTTGATTTACAATACATTGTGAGTAGGACTAATGATTTGGATATATAGTCTGATACTAATACAAGCTGGTAGGGACCAGTGAACCTACAGAGGGAATATCAATTTTACAAACTAGTATATTGAATATTTATCT</genome_strand>
        <mrna_strand>CGGGCAGGTACACAATCTGGTTCTCCTGAAGGGCCACTTCATTTTACTGGTTCAGGTTCAGCCAAAGGGGTGTCTGTGAATGAAGAGGAGGATAATAAATCGGAAAGCTATAATTGGAATGGACAGCTTCACAAGAGTATTGAAGGGTCAACTATAAGATCAAGTAGCCATTAATTTTGCAGCTACAGAAATAGGACAGAAACAAAACATAACAAATAACTTCACAGGAAATAGGGAATCTGCTGATATTAACATATGTTTGTTTGTTGATTTACAATACATTGTGAGTAGGACTAATGATTTGGATATATAGTCTGATACTAATACAAGCTGGTAGGGACCAGTGAACCTACAGAGGGAATATCAATTTTACAAACTAGTATATTGAATATTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568416" ref_strand="+" ref_description="SGN-U568416 Tomato 200607#2 [18 ESTs aligned] (*GB) gi|157327856|emb|CAO16557.1| (e_value=3e-80) unnamed; (*ATH) AT5G66860.1 (e_value=3e-79) | Symbol: None | expressed protein | chr5:26718284-26719795 REVERSE | Aliases: MUD21.12, MUD21_12; (*SWP) sp|Q2NAN1|RL25_ERYLH (e_value=2e-13) 50S ribosomal protein L25 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplY; ">
      <seq>gccctaaacccgaattttcctgagggagtttacccatttctccaacactcgacgctttcacgggaatgtcgaaatggtggcgtgcggtggcaaccaccgccggaggtctgaggtcgacggaggtaactagcaggagaacgtattttacaattcaagcgatccctagggaggtcagcggaagaagagtttccagtagggaccgagcccaaggtcgtattccggccgttgttttctcacagaactacgtccagtcaaaacctgacgatccaacttccattgtcgccgcaagttctgtttctagaaagttcctccttacaactgaaaggaagcagattaaaacgatcattgattcggttgatctccctttcttttgttcgacaaccttccctcttcagattcgagctggttcgggctcgtcaactttactggaatctggaaaagtacttcccattaagattcataaggatgaagaaactggtaagatattgaatttggtctttgtatgggctgaagatggaacaaaattaagggtcgacgtgcctgttgtgttcaaaggggagcacgagtgccctggtctcaagaaaggtggttatctaaacaagattagaccttccctaaagttgttgtgcccagcggagaatatacctcaaaaaattgaggtggacataagtcagctagatgttgaagacaaagtgtccctgcatgatatcgatgttcatccaacttggaagctcttaagcaagaatgaaaccatccctgtttgtaaggttaaggcaacgccagttgatagctaattttgtcgatgctatttttcaactggcagatgcatctgaagtctccattagttcaacattgtctgttctaattttgacctggtttcgtagtggtgtatatggacacggtcaaaagacattagaaacttttgctatactgtagtagtaaaattgctattttgggaattgttctagaataataaacttgtgcattaatgagtaaattggaaatgcaactgcagtctttttaagttttttagtatgaaataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="16975" stop="20992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17274" g_stop="17728" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18003" g_stop="18132" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="585" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20243" g_stop="20692" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="1035" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U568416" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1035</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17274" e_stop="17728"/>
          <exon e_start="18003" e_stop="18132"/>
          <exon e_start="20243" e_stop="20692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAAACCCGAATTTTCCTGAGGGAGTTTACCCATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAGGCAAGTGATGCTTCTTCCTGTGTATTCTGATATTGTTTTAGTGTTAATCCCTGTTCTATTTAACTGAATTTGTCAGTATACAGAGCATAAGATACTGGTTACACGGAATGTGATAGAATGTTTGAAGATTTTTTTCAATATTGATGAATTCGAGTTAGAAAGTTGTATAAATTAGAATTATATCCAACAATTTGGACAATTGCAAATGGATTAAGTGTCATCATGGGAATTGTATTTAGTCTAAACGCGTGTTTTCTTGCTGTTATTTGTATAGATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAGGTACTGTCTTCTGCTTTTTGTCTTTCCATAATAAGAGATGTAATTTTACCATGAAAATACAATAGCTTCAGCCTAGACCAACCTGGGACATGTACTGCTCATATTACATTCTATGCATTTTATTTCCATTGCTGGTTGAGTTTCCTCTTGAATGTGTGAAATTACTATTTTTTGAGTGATTTCTGTTTATTAGTTGTGGTTCTGTAATTAAACACAGAAATATGAAGTGACTATAAATTATAACCATGCATACCTTTGACACAAAACTATTGTCAATTTGTCAGAAACCCCATTTAGGCTGATTTGAACTTTCAATGCCAGAAAGTCCGAATACTTGAAATTCCTATTTCCTTTTCTGACCAACGAAGATCATTTGAAAGAGACGAAGTTCTCTATTTTCTTTGTTAATACCCTTGTGAACTGATATTACCGCACAGTGAATACTCATGCAAGATTTGATGAACTGATATTACTGCATAGAGAATACTCATGTAAGCTTTGGAATTTATTTACTCTGCAACATCATGGTATATATGCTGTCTTGAAGGGTATCAAGGAGAATACGTTTTATTGCAGTTATTTAGTCTACATTTGCGGGGCATCTGGAAAGAAGTACGACTTGCTTTATCTAGTTTTCTGGATTATCCTTCCAACACTATCTTATTTTCAGCCTTCAGGAAGCTGATTGTACCTGCATAGTGTGGAGAACTCCTCATATCATATTTTACATGATCCAAAATTCAAGGGAATCCCTCCCAGCCATAGTTATTATACTCACCTTTATATTATGAAAGGATAAATACTCTAGGAACATACATTTGCTAACACCTGTTAACTGCAAGCTAAGAAAATAAGATATTTTCACCTATACTGTGAGGGGTATTTTGGTTTGGAACAAGTTATCCTGGGATAAGTTATCATGGGTTTAGTTGTTCCACCATGTGTATGAGATAACTTATCTCATCAGTGAGGTATAAATGGTGGAATGAATAATCCCATGACTGCCTAATACCTCGAACCGAACACGGGCTAAAATAGTCCTGCATTTTATCTCTGCAATTATTATACCTTATTCCTCGCACCAAACGACTCCTAAGTCTGTAACAAATCATCGCAAACTTGGTATTCTTGGATTCAGTGAATGTATCAACATATCGGATCTATATGTGTATTTATTTGTGGCATTTTCTGAAAACCTAACCAAGTACCTTTAGGTGATAAAATACAGCTTTCAGTGGAGAGATTACCCTCCCAAGAACTTTTTAGTGAGAACTTCATCTTGAACCTATGCTAATGCCCCTCATGCTTTTTTAGATATGTGCTTTTAGTGAATGGTGATTGAAGGATTTATATTGGCCTATGTCTGTCCCAGCTTCCAGCCTACTATTTTTGCTTGTCAAATTAGTTCAGGGAACTTCCATTTCATCTTGCGATTTTAACTGCATTAAACATTGTGAAACAATAAACTTCGATATTGAAAGAAGATAGCATAAGCTCTACAAATTTAATAGTTTTCTGTCTTTGTCTATTCTGATCCAGTTCCAGCACTAGTAAGCTCCTTTTTTTGTATCCTTAGCACATTATAAGAGGAGGTAATACTTCAAGTAGTTAACTTAAGATGCTGTGAAGCCTGATACTACTTCTAATGGAACCCCATGATAAACTAAATTTGGTTCAAACCATGATTGGTTACAAAAGTATTTTTTGTATATGCTTCAGAAAAAAAATCCCTTCTAGTATCAGCACACGGGAGGATTATCTTGTTTAATGGTATTATTTCTGTTCAAATTATGTGAAGTAACGCCTTCCACTTGTTGTCAAGACACCTCAAACCAAGGGCAATTCTTTATCAGAAATCTTTGGTAGCATTATTTTCAAGTTTCCTTGGCGTGCTTATTTGTTATCTTGTCTTGTCAAGTGCTAGAAATGTTGATGGAAAGAAAGCTTTAATGCATAGATTGGCTTGGAGTAATGACTCTACTGCTCATTTATATGCTTGGAAACAGTGTTGTGTTTCTTTTTCTTAATTCTTCCATGAGAATATCGAACATGCAAATATTTGTTTGAAAATATTTAGTGAAAATGATTTTAGCTTTTTATATGTAAGCAGGTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</genome_strand>
        <mrna_strand>GCCCTAAACCCGAATTTTCCTGAGGGAGTTTACCCATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG..................................................................................................................................................................................................................................................................................ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585340" ref_strand="+" ref_description="SGN-U585340 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157327855|emb|CAO16556.1| (e_value=2e-78) unnamed; (*ATH) AT5G66850.1 (e_value=4e-65) | Symbol: None | protein kinase family protein, contains Pfam domain, PF00069: Protein kinase domain; identical to cDNA MAP3K gamma protein kinase GI:2315152 | chr5:26712833-26716550 REVERSE | Aliases: MUD21.11, MUD21_11; (*SWP) sp|O22040|ANP1_ARATH (e_value=1e-15) Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1; ">
      <seq>agatggagaagaagaaggaaagggaggattttgacctcacgatgaagatatttttcttgtctttttcctatcagttttccttataactctccattccttccttcttgtacaacttttttccgggaacccgccgacgccgaccaacccgacgccggcgagttttcccaccttttttacccttctccgaggttcctctgttttcaactatgctcctgaacgcaggttttgtacagtgttattattattatctttttaaggcctcaaacgtaccatgcattttgtaaccaaaactaccacaggcaatgcgttggtggcagagcgccttttcatcttcctccggttcgtcttcctcttcctcgtcatgctcctcttccaaagtatactctgacgatagcctccttgcctccggtggaggcattcgttacaccatcaaatccgcttttttcttcgcccgtaagcgccgacacgctcgcgcgaaaaaactccaaaatcttacggaacatgacggtgatgactggctttctcactgttccaatgataatttgccgtccaaatattcctccgatcgtccgcctccgcaacctttgcctttgccggagctgcatcttgtgcttcgccacgaatccgatgcggtttcgaatgaacccaatgtaccactgccatcgccctcagacgcgcatttgcatcatagaactggagaggattcttccacccgtaaggatggtgtagcatcccatggaagattatcaagccaagatggtcgaaagaagaaaaaagagcacttgggaagtcgcttgtctaggaagacacctcaaaagcttcatgttgctgatagagcttctgatatcaggatcagcgcacccattagtgctcctacaactccttatgcaagtcctggagtcagtccactaaaagctggggatcttttaaatcataattacatggcattccctggtgcttttcaagtttgttctgccccagagatgcctccatcggacacacttcagtatccaggtttctcttaccatgttctcccggagaaaaatgcttttagtgttgataattctcctcatcacagtccaagagtaagcccacagaggagtggaaagatcgcaagtggacctgcatcacccttgcatcaattattaccaaatgagaactcaacagcacgccgtgagagtagtgctcagggaaatgtccatccactaccacttcctcctttgggtgccactccgtcacaccctacttccattccaccagttccctctaatgcagagttgacaccaatcaaaggccaatggcaaaaggggaaacttattgggcgtgggacttttggtagtgtatacgtcgcatccaacagagaaactggagctttatgtgcgatgaaagaagttgaattattaccagatgatccgaaatctgcagagagcataaggcaattagagcaggaaattaatgttctcagtcatctcaagcacccaaatattgtccagtattacggcagcgaagtagttggtgaccgattttacatttatctggaatatgttcatcctggttctatcaataaattcatccgtgatcattgtgaaacaattacagaatccatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="25166" stop="28236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25464" g_stop="26205" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26206" i_stop="26485" i_length="280">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26486" g_stop="27103" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="1360" r_length="618" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27104" i_stop="27201" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27202" g_stop="27289" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1361" r_stop="1448" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27290" i_stop="27684" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27685" g_stop="27747" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1449" r_stop="1511" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27748" i_stop="27838" i_length="91">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27839" g_stop="27936" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1512" r_stop="1609" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U585340" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25464" e_stop="26205"/>
          <exon e_start="26486" e_stop="27103"/>
          <exon e_start="27202" e_stop="27289"/>
          <exon e_start="27685" e_stop="27747"/>
          <exon e_start="27839" e_stop="27936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGAGAAGAAGAAGGAAAGGGAGGATTTTGACCTCACGATGAAGATATTTTTCTTGTCTTTTTCCTATCATTTTTCCTTATAACTCTCCATTCCTTCCTTCTTGTACAACTTTTTTCCGGGAACCCGCCGACGCCGACCAACCCGACGCCGGCGAGTTTTCCCACCTTTTTTACCCTTCTCCGAGGTTCCTCTGTTTTCAACTATGCTCCTGAACGCAGGTTTTGTACAGTGTTATTATTATTATCTTTTTAAGGCCTCAAACGTACCATGCATTTTGTAACCAAAACTACCACAGGCAATGCGTTGGTGGCAGAGCGCCTTTTCATCTTCCTCCGGTTCGTCTTCCTCTTCCTCGTCATGCTCCTCTTCCAAAGTATACTCTGACGATAGCCTCCTTGCCTCCGGTGGAGGCATTCGTTACACCATCAAATCCGCTTTTTTCTTCGCCCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCGTTCTCACTGTTCCAATGATAATTTGCCGTCCAAATATTCCTCCGATCGTCCGCCTCCGCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCCGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGGAGAGGATTCTTCCACCCGTAAGGATGGTGTAGCATCCCATGGAAGGTATGTTATCTTTTATGAACTTGTTTCTTTCCAATTAATCTGAATTTCCCGAATTGGATGCATGATTTGTTTTCCTTACAACTCAGGCTTCATTAATATTGTAAATTTTAGCCTTTGATTCTACGGTTTACCACATTTTTTTGCAATTGAGGTTCACCATAAAGAATATTCCTTTTTTTTCTTAGCATGGTTATGGTATTACTCATTCAGCTAGCAAGCTTGTTAAATTTTGGATTTTTCTTACCTGTATTTGTGTTCTTCTTTAATTTTGTTTTAGCAGATTATCAAGCCAAGATGGTCGAAAGAAGAAAAAAGAGCACTTGGGAAGTCGCTTGTCTAGGAAGACACCTCAAAAGCTTCATGTTGCTGATAGAGCTTCTGATATCAGGATCAGCGCACCCATTAGTGCTCCTACAACTCCTTATGCAAGTCCTGGAGTCAGTCCACTAAAAGCTGGGGATCTTTTAAATCATAATTACATGGCATTCCCTGGTGCTTTTCAAGTTTGTTCTGCCCCAGAGATGCCTCCATCGGACACACTTCAGTATCCAGGTTTCTCTTACCATGTTCTCCCGGAGAAAAATGCTTTTAGTGTTGATAATTCTCCTCATCACAGTCCAAGAGTAAGCCCACAGAGGAGTGGAAAGATCGCAAGTGGACCTGCATCACCCTTGCATCAATTATTACCAAATGAGAACTCAACAGCACGCCGTGAGAGTAGTGCTCAGGGAAATGTCCATCCACTACCACTTCCTCCTTTGGGTGCCACTCCGTCACACCCTACTTCCATTCCACCAGTTCCCTCTAATGCAGAGTTGACACCAATCAAAGGCCAATGGCAAAAGGGGAAACTTATTGGGCGTGGGACTTTTGGTAGTGTATACGTCGCATCCAACAGGTATAATTTCCAAATAAATCTCATTGCATATGAATACGTTTCCGCTTTTCTATACACCATTGAGTTTCTAATGTTTCCCAGCGTTTTATTTCAACCAGAGAAACTGGAGCTTTATGTGCGATGAAAGAAGTTGAATTATTACCAGATGATCCGAAATCTGCAGAGAGCATAAGGCAATTAGAGCAGGTTATACTTCCTTCATTTTCTTTGTTTCTTTAAAGTTTAGATATTTTAAAAATATAAAAAAAAACAAAAAAACTATAAGTTGCAAATTCTTCTCAAGTCAATAAGATGAAAAAATATTTTTTAAAATGTTAGTCAAAGTTCACATATTTGAATCTCACAAAGCAAAACGTGCCACATAAATTGAGACAGAAGTAGTATAAAAGTTTGCATCTTGATTGATGAACTGGATCATATTGACCATTTAAAGCAGCAGTACCAAACACATCGAGTATGAAATGTTGAATGTGAATACAGTAAATTAGCAACCACCAAACCACTATCATGGGCACATGAAGACATGTTTGTTGTCAAATTGTTTCAACTTCTAACTGTCTCCAACTTTTATGTTGGTATAGGAAATTAATGTTCTCAGTCATCTCAAGCACCCAAATATTGTCCAGTATTACGGCAGCGAAGTAGTAAGTAATTCTTATTCTCCAACTAAGTTATGGACTTGATTTATCCGTGCATATTGTAATTAATGAGATTCTTTACTTCTTGATTGTGCAGGTTGGTGACCGATTTTACATTTATCTGGAATATGTTCATCCTGGTTCTATCAATAAATTCATCCGTGATCATTGTGAAACAATTACAGAATCCATAGT</genome_strand>
        <mrna_strand>AGATGGAGAAGAAGAAGGAAAGGGAGGATTTTGACCTCACGATGAAGATATTTTTCTTGTCTTTTTCCTATCAGTTTTCCTTATAACTCTCCATTCCTTCCTTCTTGTACAACTTTTTTCCGGGAACCCGCCGACGCCGACCAACCCGACGCCGGCGAGTTTTCCCACCTTTTTTACCCTTCTCCGAGGTTCCTCTGTTTTCAACTATGCTCCTGAACGCAGGTTTTGTACAGTGTTATTATTATTATCTTTTTAAGGCCTCAAACGTACCATGCATTTTGTAACCAAAACTACCACAGGCAATGCGTTGGTGGCAGAGCGCCTTTTCATCTTCCTCCGGTTCGTCTTCCTCTTCCTCGTCATGCTCCTCTTCCAAAGTATACTCTGACGATAGCCTCCTTGCCTCCGGTGGAGGCATTCGTTACACCATCAAATCCGCTTTTTTCTTCGCCCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCTTTCTCACTGTTCCAATGATAATTTGCCGTCCAAATATTCCTCCGATCGTCCGCCTCCGCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCCGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGGAGAGGATTCTTCCACCCGTAAGGATGGTGTAGCATCCCATGGAAG........................................................................................................................................................................................................................................................................................ATTATCAAGCCAAGATGGTCGAAAGAAGAAAAAAGAGCACTTGGGAAGTCGCTTGTCTAGGAAGACACCTCAAAAGCTTCATGTTGCTGATAGAGCTTCTGATATCAGGATCAGCGCACCCATTAGTGCTCCTACAACTCCTTATGCAAGTCCTGGAGTCAGTCCACTAAAAGCTGGGGATCTTTTAAATCATAATTACATGGCATTCCCTGGTGCTTTTCAAGTTTGTTCTGCCCCAGAGATGCCTCCATCGGACACACTTCAGTATCCAGGTTTCTCTTACCATGTTCTCCCGGAGAAAAATGCTTTTAGTGTTGATAATTCTCCTCATCACAGTCCAAGAGTAAGCCCACAGAGGAGTGGAAAGATCGCAAGTGGACCTGCATCACCCTTGCATCAATTATTACCAAATGAGAACTCAACAGCACGCCGTGAGAGTAGTGCTCAGGGAAATGTCCATCCACTACCACTTCCTCCTTTGGGTGCCACTCCGTCACACCCTACTTCCATTCCACCAGTTCCCTCTAATGCAGAGTTGACACCAATCAAAGGCCAATGGCAAAAGGGGAAACTTATTGGGCGTGGGACTTTTGGTAGTGTATACGTCGCATCCAACAG..................................................................................................AGAAACTGGAGCTTTATGTGCGATGAAAGAAGTTGAATTATTACCAGATGATCCGAAATCTGCAGAGAGCATAAGGCAATTAGAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GAAATTAATGTTCTCAGTCATCTCAAGCACCCAAATATTGTCCAGTATTACGGCAGCGAAGTA...........................................................................................GTTGGTGACCGATTTTACATTTATCTGGAATATGTTCATCCTGGTTCTATCAATAAATTCATCCGTGATCATTGTGAAACAATTACAGAATCCATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564549" ref_strand="+" ref_description="SGN-U564549 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ctcaactgattttgggatggaagtagcagtcattctttttggtttctctttcaacgagagctgaactcgtgaatacaatgtaaacctctatatatgtgctgtgtagatagcttgaaaccgaaaactaagttggagccagtaggtgctctggcttgttgtcaatattaacacctcgagaggaacataggtttattatcatccagggaagttttttcctgctgaccttggagtttagaagtagattttctgtaatgacttccaaagcaggagattcaataataatcaaaagaaaatgaaatgctttgacaaattatacaattctttactgaatctcacaatcatgtctactggttttgtttgtatctcatgattgcttatattgcaacttagtggctatatttttcagtgtgttaaacaaaaaagcgaagcataacaatgcaatatataaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="29931" stop="30945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30231" g_stop="30644" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U564549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30231" e_stop="30644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTTGGTTTCTCTTTCAACGAGAGCTGAACTCGTGAATACAATGTAAACCTCTATATATGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCAGTAGGTGCTCTGGCTTGTTGTCAATATTAACACCTCGAGAGGAACATAGGTTTATTATCATCCAGGGAAGTTTTTTCCTGCTGACCTTGGAGTTTAGAAGTAGATTTTCTGTAATGACTTCCAAAGCAGGAGATTCAATAATAATCAAAAGAAAATGAAATGCTTTGACAAATTATACAATTCTTTACTGAATCTCACAATCATGTCTACTGGTTTTGTTTGTATCTCATGATTGCTTATATTGCAACTTAGTGGCTATATTTTTCAGTGTGTTAA</genome_strand>
        <mrna_strand>CTCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTTGGTTTCTCTTTCAACGAGAGCTGAACTCGTGAATACAATGTAAACCTCTATATATGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCAGTAGGTGCTCTGGCTTGTTGTCAATATTAACACCTCGAGAGGAACATAGGTTTATTATCATCCAGGGAAGTTTTTTCCTGCTGACCTTGGAGTTTAGAAGTAGATTTTCTGTAATGACTTCCAAAGCAGGAGATTCAATAATAATCAAAAGAAAATGAAATGCTTTGACAAATTATACAATTCTTTACTGAATCTCACAATCATGTCTACTGGTTTTGTTTGTATCTCATGATTGCTTATATTGCAACTTAGTGGCTATATTTTTCAGTGTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599208" ref_strand="+" ref_description="SGN-U599208 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157340954|emb|CAO47759.1| (e_value=4e-54) unnamed; (*ATH) AT2G15790.1 (e_value=1e-54)  Symbol: None | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase, identical to cyclophilin-40 (Arabidopsis thaliana) GI:13442983; supporting cDNA gi:13442982:gb:AY026065.1: | chr2:6884857-6887980 REVERSE | Aliases: F19G14.21, F... ; (*SWP) sp|Q9C566|CYP40_ARATH (e_value=8e-54) Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40; ">
      <seq>accagtccacaggtattgacagaaacaggaaaatcgcatgctgtccaccgcgtactgtagcataaactgctccttcaaaaactcaaagggtttccgttttttttttttccattgaaacgtttttcgagttcaaaaaaaaatggcgaatccaaaatgctatttggacattacccttggtggaaagcttgaaggaaaaatggtgattgacctttacaaaaacatcgttcctaaaaccgttgaaaatttcagggctctttgtactggtgaaaaaggcattggccccaacaccggtgtccccctccatttcaagggttcttgttttcatcatgtcatcaaaggctttatgttacaaggcgggaacttttctactgaaaacggcagtggtggggagtcaatttatggcttgacatttgaaaatgaaaatttcaaactcaaacatgaaaaaaaaggaatgctttctatggctaattctggtccaaatacaaacgggtctcaatttttcatcaccgcttctcaaacacatgttctaaatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="45029" stop="47023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45329" g_stop="45638" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45639" i_stop="46497" i_length="859">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46498" g_stop="46723" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="536" r_length="226" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U599208" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45329" e_stop="45638"/>
          <exon e_start="46498" e_stop="46723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGTCCACAGGTATTGACAGAAACAGGAAAATCGCATGCTGTCCACCGCGTACTGTAGCATAAACTGCTCCTTCAAAAACTCAAAGGGTTTCCGTTTTTTTTTTTTCCATTGAAACGTTTTTCGAGTTCAAGAGAAAATGGCGAATCCGAGATGCTATTTGGACATTAGCCTTGGTGGAGAGCTTGAAGGAAGAATGGTGATTGAGCTTTACAAAGACATCGTTCCTAAAACCGTTGAAAATTTCAGGGCTCTTTGTACTGGTGAGAAAGGCATTGGCCCCAACACCGGTGTCCCCCTCCATTTCAAGGTTTTTATTCGGTTTTCTCTATTTTTCTACGCGTAAATAGTTTCTGCGTCCTGTAATATGGTTGTGCATTTGTGTTTTTTCCTCTTCAACACATGAATACTTGTGTTTTTGAGTGAAATAGACCTAGTTGAGGAATGTATATGGTCAGATAGATGATTCATGCAGTCAAGTCCAAACTAGTTAGGAATTGAGGCTTATATGTAGACCTGTAGTAGTTTTTGGGTGTATATTGGTTCCCACCTTTTCAGTTTTTGGGTGTAAGGAATGCATGTGATCATATTGTCAGACTTCAATACTATTTTACTTGAAAATATCAGTATGATTCACTCTGTTTGATGTTTACGAATCACGTCATAAACTCTGATCTTCTTGTGCCAGTAGGGGTGGAGTCTTTTTGCTGTTCTTTTGTTTCTTCGCATTCTTTTACAGTTGAACAGGGAAGTAGTATATATGAATTTACTTTTAAGCTTAGGAAAGAATAAAGGAGAATGGGGCTCTTCTCAAAAATTTCATGAAAGTAAGTCTGGTTGCACATATGGAAACGGTTCTCTCCTTGGGCGGGGAATGGATCATCGTTTTTAAGTTCAGTCTGTTTATATGAATTGTCAAAGACTCTAATGCCAATGATGATATATAAGGGAGAATGAAGAGTGATTGCTTAGAATAGTACTAACAGTTCCAAGACAGCATGAATTTTGGGTGTATGTTCTGGAATTATCTGTTACTTCATGCTCTATCCTATCTAAATCTATTTTTTTTGTGACCCAAATAAATTGATTCTCTCTATGTGACTGTCCATTTTTACCTTTCCCTTTAGCTTTTGTTCCATTCATTATAATAATGTTTGCTTCTTATGTAGGGTTCTTGTTTTCATCATGTCATCAGAGGCTTTATGTTACAAGGCGGGGACATTTCTACTGGAAACGGCAGTGGTGGGGAGTCAATTTATGGCTTGACATTTGAAGATGAAAATTTCAAACTCAAACATGAAAGAAAAGGAATGCTTTCTATGGCTAATTCTGGTCCAAATACAAACGGGTCTCAATTTTTCATCACCGCTTCTCAAACACATGTTCTAGATGGAA</genome_strand>
        <mrna_strand>ACCAGTCCACAGGTATTGACAGAAACAGGAAAATCGCATGCTGTCCACCGCGTACTGTAGCATAAACTGCTCCTTCAAAAACTCAAAGGGTTTCCGTTTTTTTTTTTTCCATTGAAACGTTTTTCGAGTTCAAAAAAAAATGGCGAATCCAAAATGCTATTTGGACATTACCCTTGGTGGAAAGCTTGAAGGAAAAATGGTGATTGACCTTTACAAAAACATCGTTCCTAAAACCGTTGAAAATTTCAGGGCTCTTTGTACTGGTGAAAAAGGCATTGGCCCCAACACCGGTGTCCCCCTCCATTTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTGTTTTCATCATGTCATCAAAGGCTTTATGTTACAAGGCGGGAACTTTTCTACTGAAAACGGCAGTGGTGGGGAGTCAATTTATGGCTTGACATTTGAAAATGAAAATTTCAAACTCAAACATGAAAAAAAAGGAATGCTTTCTATGGCTAATTCTGGTCCAAATACAAACGGGTCTCAATTTTTCATCACCGCTTCTCAAACACATGTTCTAAATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604582" ref_strand="+" ref_description="SGN-U604582 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147858320|emb|CAN81422.1| (e_value=1e-23) hypothetical; (*ATH) AT2G15790.1 (e_value=1e-23)  Symbol: None | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase, identical to cyclophilin-40 (Arabidopsis thaliana) GI:13442983; supporting cDNA gi:13442982:gb:AY026065.1: | chr2:6884857-6887980 REVERSE | Aliases: F19G14.21, F... ; (*SWP) sp|Q9C566|CYP40_ARATH (e_value=1e-22) Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40; ">
      <seq>gaagactataagatggctatcaggaagtacaggaaggctgtccgttataccgacttatgctgggaaaaggacgacattgatgaagtaaaaagcgagtatttgaggaagacaaagtcccagataccttgcaaatagttctgcctgtaaactgaagataggagatctaactggagcattgatagatgcgaatgatgcaatttatgatggagaagacaatgtcaaagctttttaccgccaaggccaggtatatatggcaatgaacatttctcacttgactttaattctgcttattagtgggcattcttctgttgaatacaaaatatatagcctgaatatacctcaacgtgttttgtacagaaagtgaaagggaacttaatgcaggataaagtgtctttccatttataatataatgatatggatgccccaaactcggttatctatnggcttccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="46987" stop="51379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47287" g_stop="47371" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47372" i_stop="47465" i_length="94">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.375" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47466" g_stop="47518" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="139" r_length="54" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47519" i_stop="48484" i_length="966">
            <donor d_prob="0.942" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48485" g_stop="48589" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="244" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48590" i_stop="49547" i_length="958">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49548" g_stop="49565" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="262" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49566" i_stop="50891" i_length="1326">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50892" g_stop="51079" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="451" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U604582" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47287" e_stop="47371"/>
          <exon e_start="47466" e_stop="47518"/>
          <exon e_start="48485" e_stop="48589"/>
          <exon e_start="49548" e_stop="49565"/>
          <exon e_start="50892" e_stop="51079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTATAAGATGGCTATCAGGAAGTACAGGAAGGCTGTCCGTTATACCGACTTATGCTGGGAAAAGGACGACATTGATGAAGGTAAATTTTCTAAGTGCAGCTATAAATGACTATCTGATTTGCTTTCTCATAACTAGGACATCTTTCTGAAGGAATTATTTTCCTCATTACACAGTAAAAAGCGAGTATTTGAGGAAGACAAAGTCCCAGATA-CTTGCAAATAGTTCTGTAAGTTCTCCTGAATTCTCTTGCACCATTTGGTCTTACGGAATGATTTTCTTTCTGTTAGAATATTGAAGGCCTTAGTAGGACTTTCAGTTACATAATATAAGAACTATTTCCTGCTTTATGGTGTGAACATATCCCGAGGACGTAGTAACTTTCCTGAAGAAATCAGCTTTGTTAATGTTTCTTCCATATAAATAAATAATAAATAACCTTGTTTTAGTCTATACATTTTCGCCATCAATGTCTATTTACATTGAAGCTAAGTTACTCGGACTCCGCAAAATAGGTGCCGTAGTTAGGGTGTGGGACCTGTTCGGATCCGGTCAAACGAGATCGGGTGTGTTGACCAACAATTTAGAGAAGAAATTGAATTTTTGATATCTCAAAAGTAAAGATTTGAATAGATCGGAAACAAATGCCTTCAATTTTTCTGCTATATAATGATTTATACTAGTCCTTTGTGTCCTTTGAAGGTTTTTTCTTGATAAATTAGAGTAATATACCGTCAAGAAGTTTCTAGAATCTTCCATTTTATCAAAGCTCTCGTGCTTAGCACATGTTGGTGTATGAATTTGTGAGAGAGAAGGGATGCAGCGCCGTTTTGGAACTGAACTAGGGTTCTTCATCGTTTTGTTCTTAGGCTGCTTTGTTCTGTACGTGAATGGAGAAGAGGGGAACACGGGGTTTGGAGGAATAGGGTGTGGGCCAGATTTGGTTTTGAATGTTGGGCCAGGTCCATAACATGAGTGAGACCAAGTCCCTTGGAGTCTTCTAATCAAAATTAGAGTATTATTTAAATGAAAAATAATAACTTAAAATAGAGTATTATTGAATCAAAGTTAAACCAGGTCCCTTTGACGGTATATTATAAGTTTTCCTCACGTATGCATATTTAGACTTTGTTCTTGTGACTGTAGCATTTCCTTTTCTTTTGCTCCGCAAAATCTTCTTAACATTCTTGTTCAGGCCTGTAAACTGAAGATAGGAGATCTAACTGGAGCATTGATAGATGCGAATGATGCAATTTATGATGGAGAAGACAATGTCAAAGCTTTTTACCGCCAAGGCCAGGTTGGTGTGTTGAGCTATAATATAGTTCAAGTGGTTAGATTTCCTGACAAAAGAAAGCCTGACTTGATTTGTAGAAGGGCAGCCAACAGTGAATAGCATATAGAATGATCTACTGCACAACCACAATATTAAATGATAAAAAGCACCTGTAACATCATTCTCCTCAGTGTCCTTGGACTTAAAAGTCTTGAGTGTAAAGAATAACTTACAATGTACTTTCCTATCTTCATCTTCCATAGAGCTAAACAAACTTCTATTTCTTTTGCATTAAGATTGTCCACCGACCTTGTTTTTCTTTCTAGTCTGGAATGATTATTTTCTGTCATGATTAAGGTGATTGATTAGGCTTCACTAGGATACAAACTTTGCGCCTTAAGTTCCTTTCTCAAGCTTGTCTCACGTTTTATTAGTTCCTTTGGTGTTGGATTATCAGTTTGCTATGGAATTTAATTCAGTTAGATAAACACAAGTACAGCTCCTGTCAACTGCATGTCATGCATCCTCTAATCCATTGAACAGAACTTACACTTACTTTCAAACTTTAAATTTACACAAATGTTGGCATATGAATCTGAGACCTGAAGACCTTCTACTAATCCTCATCTTTATTCTCATTAAACAGCCCTTTGTATTATTATATTCAGGAGAAGCGTTTGGTCATAGCAATATCTCTCCTGTATTCTTCGAATCCCAAAGGAGGCAAAAAGACTAGATAATTTTTTTCCATCTGTCCAAGCCATGGTAGATAGAGTTACCCTGTACTTGCCTTAGTGGGAGGCGGTTGATATCTTATTGAATTAGTCAAGGTGTGGGCTATCGAGCCGGACACCATGGTTCTAAAATATTTTACTTGATGGTGTAGGATTACTGATTCACTTTTACCTTATTGTCTTCATACTTCACTATACGGAATCTTATACATATCCAAAACATTGAACCATCATTTTCTCTATTTCAGGTATATATGGCAATGAATGCTATAGATGCAGCAGCTGAAAGTTTTAAGAAGGCCCTGGAGTTAGAGCCAAACAATGGTTAGTGAAGTATAAAGAGTATATTTTTCTTCTTTGACATTTTAAGGGAAGAAACTCTGGCAAATGTTGAAGTATAAAGAGTATATTTTTCTTCTTAATTAACGCATGTGCTGCCGTTCCTTTTTTCCTTTTTCTGCATTATTTCCTGGGCTACCTGTATACTCTAAGTTGTATTAGATGATTCTCTGGAGCCAAACAAGGTTGCTGTCTTTAGCTGTGAATCTCAGGCTTAGTAACTTGGATATCCAAACTTGCATATAGAAGTCCTTTTCATCTGGCAATGGAACTTTTAATCCATAAAAGGAGAAGTAGCAGTTGAGAAAGCGTGTTCATTATGTTTTGCCTAAACTGATTATATAAAAGACTCAGAGATGCTCATAGAGTTCTCACTGGAATTTCCGATTTGTACCCAAAGTGTGGTACACTTCGCTCCAACCCACACTCCCTACCTCATAAAAGTTCACATTAAACTCTGTTTGACTGGTTATATTTTGTACGAATAAAGGAAATAATATTATTCACCTCTAGTCTTAGAGTATCAGCCCCGGTAACCTTTTCTTACATTTACTCTTTCAGGGGGGATAAAGAAGGAGCTGGCTGCTGCAATGAAGAAGGTTAGTCATTATCAGATCAAAATATTTGATCCAACATCTTCACATGAACGTAATACATGTTCTCTAATTTTCTTTCTCAGAAACTACTCGTTCTGTAGTTTCAAAAACTACATTTTCTTTAATTTGTTAACAATTATGACAGATTGCTTATAAACTAGAGAAGGAGAAGAAGGGTTATGCTAAAATGTTTCAGTAAAATTTCCAGTGGTATGCTGAACGCTTTTTCAAATTTCAACCTGCAATAATTTTTTCATTATCCAAAATTTATGATGCTCTGAGATATCAAATGTGGCTGCTACTAATGCTTGTTAGTTCAATCTGTTTGGCACAGTTCACAATAGAAGTATAGTGGTTCAGGTTAACTTTTGGGCCTCAAAACAGCTAGAATCAGGTATTTTGCGCCCACGTCATCTTCTCTCTCTATTTTAGCCTGTCAGATCAATCTGTTATGTCTTATCTTGTAGGAGTAAGAGAAACTTTGGTAGTTTGGTACATCAATTTCTTGTATATCCTTCCATCTCATTGATCCTTTTTTTCCTTTCTACATTTTGAGTTCTTGCAGGATTTGTTACTCATGGAGTACAAAAACGAAGGGTTTGTTCTCAACTTCTCATAGAGTACAAAAACTAACTGCGGTTATCAAAGTTTGAGCCGATTTCTCACTTGACTTTAATTCTGCTTATTAGTGGGCATTCTTCTGTTGAATACAAAATATATAGCCTGAATATACCTCAACGTGTTTTGTACAGAAAGTGAAAGGGAACTTAATGCAGGATAAAGTGTCTTTCCATTTATAATATAATGATATGGATGCCCCAAACTCGGTTATCTAT-GGCTTCCGC</genome_strand>
        <mrna_strand>GAAGACTATAAGATGGCTATCAGGAAGTACAGGAAGGCTGTCCGTTATACCGACTTATGCTGGGAAAAGGACGACATTGATGAAG..............................................................................................TAAAAAGCGAGTATTTGAGGAAGACAAAGTCCCAGATACCTTGCAAATAGTTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTAAACTGAAGATAGGAGATCTAACTGGAGCATTGATAGATGCGAATGATGCAATTTATGATGGAGAAGACAATGTCAAAGCTTTTTACCGCCAAGGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGGCAATGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTCACTTGACTTTAATTCTGCTTATTAGTGGGCATTCTTCTGTTGAATACAAAATATATAGCCTGAATATACCTCAACGTGTTTTGTACAGAAAGTGAAAGGGAACTTAATGCAGGATAAAGTGTCTTTCCATTTATAATATAATGATATGGATGCCCCAAACTCGGTTATCTATNGGCTTCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569532" ref_strand="+" ref_description="SGN-U569532 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|9794870|gb|AAF98369.1|AF158253_1 (e_value=0) patatin-like; (*ATH) AT4G37050.1 (e_value=8e-112) | Symbol: None | patatin, putative, similar to patatin-like latex allergen (Hevea brasiliensis)(PMID:10589016); contains patatin domain PF01734 | chr4:17457129-17459613 REVERSE | Aliases: AP22.16, AP22_16; (*SWP) sp|Q3YJS9|PT3K1_SOLTU (e_value=5e-75) Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1; ">
      <seq>cggccggggactaggttttaactttcttttaacataacaatacacacttttctccccttctctttcaaatatcaaaaacacaaaactcttttttgttaggtaataactcaacatggggaggatggttcttatagctgcagcaatgactctttttgtaacccttcaagttttacaacctccattagtagtttctgccgccaccaaaggaaagacggtaaccgttttgagtatcgatggaggtggtattagaggcattattcctggaaccctacttgccttccttgaatctaaacttcaggaacttgatggaccaaatgcaagaattgcagattacttcgatgtagtagcaggaacaagcacaggtggattagtaacaactatgcttactgctcctaacaaggataatcgtcctttatatcaagcaaaagatatttccaatttctacatgcaacatggccctcaaatttttcctcaaagcaggcgtaacagctttgtgagaaggatcacaaatttgtttggaggaccaaagtatgatggcatatacttgagaacaattattaattcaatattaggcaatcttacaatgaagcaaacgttgactaatacagtcatacctacttttgatatcaaacgtcttcaaccaataatcttcagtactgctgatgcaaaagcaaatatctcaaagaatgctcaattatcagacgtttgccttagtacctcagccgcacccacttatttcccagtgcacagttttgagactaaggatgctcaaggcaaaacgcgtacatttgatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcaacaaaatgttggttctgtcgttgggcacgggtataggcaagcaagaagagaagtataatgctacagtggcttccagatgggggatggtaggttgggtgtacaacaatggtgccacccctttgatagatatttatggtgatgctagtgctgatatggtagacatacatacttccaccatgtttcagacccttggtagtgagaagaactacatcaggattcaggatgacaatttgacaggggaggctgcatctatggatattgcaacgacacaaaacatggagacactggtacaaattggtaatgatctattgaagaagccaatttcaagggtcaacttagaaacaggccgatacgaaccagttgttggggaaggcaccaacgaagctgctatagtccgcttcgctcagttgctttcagaggaaaggaagctccgaataaactaacgaaatacttgcagaaattttacacacaatttgttggacgattagaagattaatttgtattcttttacccttcaatagttaagcgcctaactagtaaaccatgttgtaatatgagaataaacatcccaagaagaaaataaaatttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="53784" stop="51037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53493" g_stop="53196" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53195" i_stop="52920" i_length="276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52919" g_stop="52738" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="480" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52737" i_stop="52628" i_length="110">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52627" g_stop="52444" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="664" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52443" i_stop="52349" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52348" g_stop="52187" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="826" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52096" g_stop="51794" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="1129" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51793" i_stop="51708" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51707" g_stop="51337" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1130" r_stop="1500" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-U569532" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53493" e_stop="53196"/>
          <exon e_start="52919" e_stop="52738"/>
          <exon e_start="52627" e_stop="52444"/>
          <exon e_start="52348" e_stop="52187"/>
          <exon e_start="52096" e_stop="51794"/>
          <exon e_start="51707" e_stop="51337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGAATCACTAGGTTTTAACTTTCTTTTAACATAACAATACACACTTTTCTCCCCTTCTCTTTCAAATATCAAAAACACAAAACTCTTTTTTGTTAGGTAATAACTCAACATGGGGAGGATGGTTCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAGGTATACCTATGCTACATATATACGTCATACGTTTTATTTCATATGACAGTTATTTGACTATACGCGCTGATCAGTACAAGTAAAAAGAAAGATATTCGCCATATATACTTGGAACTTATTATTTTAAGCATGTTATGACATTTCTATGACTATATATAACAGGAAAAATTAAATATCTAACTGTTGGATTAAAAAGGAAAATGTGTCGTATAAACTGAAACAGAAGAAATACTCGTAGATTACTTTTTTTCTCATGAATTTATTTGTGTATGCTAGGAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAGGTTAACAACAACAGTGAATTAATTACTCATAGAGTTTGTCTCTTTTTTCTTTCTAATTTTATGCTTTAATACTGAAGGCAAGTGTTTGTTTCATTATATATGTAATTCAGGCGTAACAGCTTTGTGAGAAGGATCACAAATTTGTTTGGAGGACCAAAGTATGATGGCATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGATGTAAACTTCTATCCTAATAACATTCTTTATCTTTATCTTATTTTATATAGTTTCTTCTTATTTAATATAATTATTCAAAATTAATTTGTCTACAGGCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAGGTAAGAATGACTGAGCTTGTCTTAGTATTTTCAAAATACATGCTGAAAATAAATCAGCTAACACTTCTCTGGTTTGATTGGTACAGGATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAACTAGTAAACCATGTTGTAATATGAGAATAAACATCCCAAGAAGAAAATAAAATTTATGT</genome_strand>
        <mrna_strand>CGGCCGGGGACTAGGTTTTAACTTTCTTTTAACATAACAATACACACTTTTCTCCCCTTCTCTTTCAAATATCAAAAACACAAAACTCTTTTTTGTTAGGTAATAACTCAACATGGGGAGGATGGTTCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAG....................................................................................................................................................................................................................................................................................GAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAG..............................................................................................................GCGTAACAGCTTTGTGAGAAGGATCACAAATTTGTTTGGAGGACCAAAGTATGATGGCATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGAT...............................................................................................GCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAG......................................................................................GATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAACTAGTAAACCATGTTGTAATATGAGAATAAACATCCCAAGAAGAAAATAAAATTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589173" ref_strand="+" ref_description="SGN-U589173 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|9794870|gb|AAF98369.1|AF158253_1 (e_value=8e-45) patatin-like; (*ATH) AT4G37070.3 (e_value=3e-22)  Symbol: None | similar to patatin, putative [Arabidopsis thaliana] (TAIR:At4g37060.1); similar to putative patatin homolog [Oryza sativa (japonica cultivar-group)] (GB:BAD38550.1); contains InterPro domain Patatin (InterPro:IPR002641) | chr4:1746479... ; ">
      <seq>ttcccagtgcacagttttgagactaatgatgctcaaggcaaaacgcgtacatgagatcttgtcgatggaggtgtagctgcaaataatccaaccttaatggcaataacatacgtttcaaaacaaatcatgacgggcaactttcaatacgagggtatgaagaatatggactgcagcaaaatgttggttctgtcggtgggcacgggtataggcaagcgagaagagaagtataatgctacagtggcttacacatgggggatggcaggttgtgtgtacaacactggtgctacccattggatagatattgatggtgatgctagtgctgagatggaagacatacatactaccaccatgtgtcataccctcggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52576" stop="51520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52276" g_stop="52187" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52096" g_stop="51820" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="367" r_length="277" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-U589173" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52276" e_stop="52187"/>
          <exon e_start="52096" e_stop="51820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCAGTGAGTAGCCACAAAAGTTTAAATTTTTATAGTATCTTATTCTTTTTGAAATATCAACATTGACACAATTCTTTTTGACTCTTATCTTAGACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTA</genome_strand>
        <mrna_strand>TTCCCAGTGCACAGTTTTGAGACTAATGATGCTCAAGGCAAAACGCGTACATGAGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA..........................................................................................ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAGCAAAATGTTGGTTCTGTCGGTGGGCACGGGTATAGGCAAGCGAGAAGAGAAGTATAATGCTACAGTGGCTTACACATGGGGGATGGCAGGTTGTGTGTACAACACTGGTGCTACCCATTGGATAGATATTGATGGTGATGCTAGTGCTGAGATGGAAGACATACATACTACCACCATGTGTCATACCCTCGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589172" ref_strand="+" ref_description="SGN-U589172 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|9794870|gb|AAF98369.1|AF158253_1 (e_value=2e-25) patatin-like; (*ATH) AT2G26560.1 (e_value=9e-18) | Symbol: None | patatin, putative, similar to patatin-like latex allergen (Hevea brasiliensis)(PMID:10589016); contains patatin domain PF01734 | chr2:11300847-11302881 REVERSE | Aliases: T9J22.23, T9J22_23; (*SWP) sp|Q3YJT3|PT2K1_SOLTU (e_value=2e-14) Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1; ">
      <seq>aattcggcaccaggcagcaatttttcttttttttaccctccaagttttacaacctccattaggagtttctgccgccaccataggaaagacggtaaccgttttgagtatcgatggaggtggtattagaggcattattcctggaaccctacttgccttccttgaatctaaacttcaggaacttgatggaccaaatgcaaaaattgcagattactccaatgtagtagcaggaacaagcacaggtggattagtaacaactatgcttactgctcctaacaaggataatcgatctttatatcaggcaaaagattatttccaatatctacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="53646" stop="52471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53346" g_stop="53196" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="175" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53195" i_stop="52920" i_length="276">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52919" g_stop="52771" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="325" r_length="150" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-U589172" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53346" e_stop="53196"/>
          <exon e_start="52919" e_stop="52771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAGGTATACCTATGCTACATATATACGTCATACGTTTTATTTCATATGACAGTTATTTGACTATACGCGCTGATCAGTACAAGTAAAAAGAAAGATATTCGCCATATATACTTGGAACTTATTATTTTAAGCATGTTATGACATTTCTATGACTATATATAACAGGAAAAATTAAATATCTAACTGTTGGATTAAAAAGGAAAATGTGTCGTATAAACTGAAACAGAAGAAATACTCGTAGATTACTTTTTTTCTCATGAATTTATTTGTGTATGCTAGGAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGA-TATTTCCAATTTCTACAT</genome_strand>
        <mrna_strand>TCTTTTTTTTACCCTCCAAGTTTTACAACCTCCATTAGGAGTTTCTGCCGCCACCATAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAG....................................................................................................................................................................................................................................................................................GAACTTGATGGACCAAATGCAAAAATTGCAGATTACTCCAATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGATCTTTATATCAGGCAAAAGATTATTTCCAATATCTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596793" ref_strand="+" ref_description="SGN-U596793 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aatcttgtggctttaatggtgaatgcgttccagaaattggaagagagaatgtacggtgtgctttgcaatagtgagaaatcatcaacaaaagcggctgtggatgcttttgctgagatgggtgttcaagttaccgttgaagattttgtgcctttcatgggcatgggtaaattcttcttcttcttcttgaatattttctttgtcaatctgcttatacgtagttgtttttccttcttggttttctttcaagtgtttgatgcgaaagatgggtatgaaattatcattgcttcccgcggttcagggtactggttcttgaacaattgaaccaacactcttgaacaattgaagcaacaccaactggtttctcaacaattgaaccaacaccaaccggttccaactggttcttgattgaaaagtagtttcttgatttgtatgtttgggaaccatggacaattttgggtgtatttgttgacttcactagcttctttggatatcattccttaaggagtcgaggataaagtaaagcatcaatcgaatggacaatattttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="72455" stop="73635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72755" g_stop="73335" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U596793" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.054" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72755" e_stop="73335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGGAGCTTTAATGGTGAATGCGTTCCAGAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGGGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGGGTAAATTCTTCTTCTTCTTCTTGAATATTTTCTTTGTCAATCTGCTTATACGTAGTTGTTTTTCCTTCTTGGTTTTCTTTCAAGTGTTTGATGCGAAAGATGGGTATGAAATTATCATTGCTTCCCGCGGTTCAGGGTACTGGTTCTTGAACAATTGAACCAGCACTCTTGAACAATTAAACCAACATCAACGGGTTCTTGAACAATTGAAGCAAGACCAACTGGTTTCTGAACAATTGAACCAACACCAACCGGTTCCAACTGGTTCTTGATTGAAAAGTAGTTTCTTGATTTGTATGTTTGGGAACCATTGACAATTTTGGGTGTTTTTGTTGACTTCACTAGCTTCTTTGGATATCATTCCTTAAGGAGTCGAGGATAAAGTAAAGCATCAATCCAATGGACAATATTTTCTACT</genome_strand>
        <mrna_strand>AATCTTGTGGCTTTAATGGTGAATGCGTTCCAGAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGAGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGGGTAAATTCTTCTTCTTCTTCTTGAATATTTTCTTTGTCAATCTGCTTATACGTAGTTGTTTTTCCTTCTTGGTTTTCTTTCAAGTGTTTGATGCGAAAGATGGGTATGAAATTATCATTGCTTCCCGCGGTTCAGGGTACTGGTTCTTGAACAATTG-A--A-------------------CC-A-A-C-AC----TCTTGAACAATTGAAGCAACACCAACTGGTTTCTCAACAATTGAACCAACACCAACCGGTTCCAACTGGTTCTTGATTGAAAAGTAGTTTCTTGATTTGTATGTTTGGGAACCATGGACAATTTTGGGTGTATTTGTTGACTTCACTAGCTTCTTTGGATATCATTCCTTAAGGAGTCGAGGATAAAGTAAAGCATCAATCGAATGGACAATATTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596796" ref_strand="+" ref_description="SGN-U596796 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157347033|emb|CAO17415.1| (e_value=3e-11) unnamed; (*ATH) AT1G56500.1 (e_value=6e-13)  Symbol: None | haloacid dehalogenase-like hydrolase family protein, low similarity to SP:P95649 CbbY protein {Rhodobacter sphaeroides}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase | chr1:21163409-21170986 FORWARD | Al... ; ">
      <seq>ctttaatggtgaatgcgttccacaaattggaagagagaatgtacggtgtgctttgcaatagtgagaaatcatcaacaaaagcggctgtggatgcttttgctgggatgggtgttcaagttaccgttgaagattttgtgcctttcatgggcatggggtgttgaaggatttgatgccgaggctgcaaagaagaggttctttgagatatatttattaaaggtgattgaaatttcatatatttacgaatatctactctcaaagcagatttcactgggcaatcatttgtagtatgcagaccgaattatggcataggtgtccctggtgcctttgaacttttctctcaggtccatccatttcttcacagtatatatgcaaacacacacactatgcgttggtttgtaatgtagttcgggaggacgtagtacttttattaaggctaaagtgtacaactcggatgaaaatcacaggttttgatgcaattgtatctgctgatgccttaaaaagtttgaagcctgctcctgatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="72465" stop="75932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72765" g_stop="72917" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72918" i_stop="74389" i_length="1472">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74390" g_stop="74507" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="271" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74508" i_stop="74584" i_length="77">
            <donor d_prob="0.673" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74585" g_stop="74654" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="341" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74655" i_stop="75347" i_length="693">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.072" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75348" g_stop="75470" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="464" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75471" i_stop="75572" i_length="102">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75573" g_stop="75632" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="524" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U596796" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72765" e_stop="72917"/>
          <exon e_start="74390" e_stop="74507"/>
          <exon e_start="74585" e_stop="74654"/>
          <exon e_start="75348" e_stop="75470"/>
          <exon e_start="75573" e_stop="75632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAATGGTGAATGCGTTCCAGAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGGGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGGGTAAATTCTTCTTCTTCTTCTTGAATATTTTCTTTGTCAATCTGCTTATACGTAGTTGTTTTTCCTTCTTGGTTTTCTTTCAAGTGTTTGATGCGAAAGATGGGTATGAAATTATCATTGCTTCCCGCGGTTCAGGGTACTGGTTCTTGAACAATTGAACCAGCACTCTTGAACAATTAAACCAACATCAACGGGTTCTTGAACAATTGAAGCAAGACCAACTGGTTTCTGAACAATTGAACCAACACCAACCGGTTCCAACTGGTTCTTGATTGAAAAGTAGTTTCTTGATTTGTATGTTTGGGAACCATTGACAATTTTGGGTGTTTTTGTTGACTTCACTAGCTTCTTTGGATATCATTCCTTAAGGAGTCGAGGATAAAGTAAAGCATCAATCCAATGGACAATATTTTCTACTGTTCAATGTTCTTCTTCAATTTCTTGATTGTTACATTCTTTTGATTTATTGTTTTTGAATTTTCAGAGGGGAAAGGTGTCTTTGTCAATACGCTTATATGTATTTGCTTTTCCCTTCTTGATTTATTTTTAAGTTTTTAATGTGAAAGATAGATATGAAATAATCATTATTGAACCGTGTTTTATTCATATTTTTTGAAAAAATTGCCCAACCCCAACTAATTCTTGATTGAGCAGGTGTTTCTTGATATATATGTTTAGCAGTTTAGGAACCATTGACGATAGTGGGCATTTTTGTCTTCGGATATAAACCGTAAATCATTAGTCCAATGGCCATTTCTTTTATGGTTTAATGCTATTGTCAGATTGCCTCATTATATCTTTTACGAGTTCACCTCAGCCATTGGTCATTTTGTTTGAAGGCATGCTGATAAATTTTATGAAGTAATGATTAAGCCAGATACATGAAATATCGATAAGAAGAAAAACAAAAGAAAAGAATTATCAAGAATCTCTGTCCAGTCCCCTCCATGGGAACTTTGTTATGTAAGAAACCAGTAACCTTCATCTACCTCATTTGAATATTTGCTGTTTGTGAAGCATCATCTCTTTCCTCCCAAATAATAGGTTTCGGTTCTCGTGGTAGATCTTATCATGTGCTTACTTTCATGAATATAGCTAGCCGAGGCCTTAAGTGAATTCTTTCATTCACTATGTTGAATTTTAGGGCCCTTCTCCACAAGAAACCCTTGTGCTCACAAAATCATCCATATTGTCTACGAACTTGTTCTTTTGAATGATCATCATGTTAATTGCGATTGGATCCAAATACATCGGTTAAATTTTTTGATCTCGAATTACACTTGTTTTCGACACCAAGTATAAAAGAATTAGTTTGATGTTACTTATCCTTTAGGAAATGTATCTTTGATTGTGTAGCACCTTGTTCCTTTACCATATTTTCTCAATGACTTTTTCTCCTTTTGATTTTCCTTTACCCTCAAAATATATTATTTAGTGGAGCAAACTTCTTATGTGTTGCTGCTGCTGCTAAGGGTGTTGAAGGATTTGATGCCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATTAAAGGTGATTGAAATTTCATATATTTACGAATATCTACTCTCAAAGCAGATTTCACTGGGTATGTTATTGTTGTAAAGCACTTTCCTTTTAGTCGTGGTATCTGACTCCAGAACTGACAATTTTATTGATAAACAGGCAATCATTTGTAGTATGCAGACCGAATTATGGCATAGGTGTCCCTGGTGCCTTTGAACTTTTCTCTCAGGTATGTATAACCTGTGATACAACTTTACTAAATGTGGACTTGCTCTTTCTGTTTTTGTTACTTCTCATTAATCTGGTGATATGGTACGCCAGTGTAAAAGCAGCGGTCTCAAAGTTGCTGTTGCATCTAGTGCTTACCGAATTAAAGTTGATGCAAAGTGGCTGCAGCCGGTTTACCAATAATGATGTCAGTTAACATAATAAACTTTGGCTGTGAATAGTTGCTTCTCATTCCTTTAATAATAGGCATTCAAGAAACAGTGGATTAGACTGAATCAGCACATAGCAAGAACTATATTTTTTTAAATTATAAGTGTAGATATGTTTTATTGTAAAGAACTACCTTATATCTACTACACTTGGCGTATAACTTCTGCAATGGGAATTACTGGACATTAAATTTTTTGCTGACATAATGAATCTGTTAGTCATGGAATCAGGTGCTCAGACTCCAAAGGCTGTGATCTTTCTTATATGGCCTTGGGCAATCCTCCCCTTATGAGTTAGCTTTTGTTGTTGAGTTAGGCCCACGGACCGTCTCTTTACACAGTATCAGTGTCGGTCCCATCAATCCCTCGACCCCTGTTGTTATGTTTCTCTTTCTCAATATTGATCCCCCGTATTATGTTTTCTGTGCTTAGATTTTCTAGTCCTGGGTGTGCCCCTAACTTTTTGTGGTTGAGTTATGTTCAAGGTCCATCCATTTCTTCACAGTATATATGCAAACACACACACTATGCGTTGGTTTGTAATGTAGTTCGGGAGGACGTAGTACTTTTATTAAGGCTAAAGTGTACAACTCGGATGAAAATCACAGGTTTGCTGTGAACTGACTGAAACCTCCCTTCCCCTCTCTTCTTTGTTTTTAGTTATCCTTTATTTATATTTAATCTCATATCCTATTTGTTTGATTTGACAGGTTTTGATGCAATTGTATCTGCTGATGCCTTAAAAAGTTTGAAGCCTGCTCCTGATATTT</genome_strand>
        <mrna_strand>CTTTAATGGTGAATGCGTTCCACAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGGGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTGAAGGATTTGATGCCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATTAAAGGTGATTGAAATTTCATATATTTACGAATATCTACTCTCAAAGCAGATTTCACTGG.............................................................................GCAATCATTTGTAGTATGCAGACCGAATTATGGCATAGGTGTCCCTGGTGCCTTTGAACTTTTCTCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCCATTTCTTCACAGTATATATGCAAACACACACACTATGCGTTGGTTTGTAATGTAGTTCGGGAGGACGTAGTACTTTTATTAAGGCTAAAGTGTACAACTCGGATGAAAATCACAG......................................................................................................GTTTTGATGCAATTGTATCTGCTGATGCCTTAAAAAGTTTGAAGCCTGCTCCTGATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602545" ref_strand="+" ref_description="SGN-U602545 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>acttatcatattgttgctagcagacctgtgtttatttaaacataattttggcatttaagcattcatgtttctttctcctacttcaacaaacatacacaaatttaagcaagtaaaagtttttcctggttcatcgtatccttccaacttttgctgccttacattggagcaagtaagctggataaggaaagatatatccaagaaatggctgcttatgaacagcataagaacaaagaaactacaacaaatccaaacttgcacaggggtttggccccaagtatgatcaactttggtgcacggaattgatcatggttatcatgtgacttcacaagcttatactggaagcaacattctccctaatgcatcctctattgagtccacggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="77743" stop="78723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78043" g_stop="78423" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U602545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78043" e_stop="78423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATCATATTGTTGCTAGCAGACCTGTGTTTATTTAAACATAATTTTGGCATTTAAGCATTCATGTTTCTTTCTCCTACTTCAACAAACATACACAAATTTAAGCAAGTAAAAGTTTTTCCTGGTTCATCGTATCCTTCCAACTTTTGCTGCCTTACATTGGAGCAAGTAAGCTGGATAAGGAAAGATATATCCAAGAAATGGCTGCTTATGAACAGCATAAGAACAAAGAAACTACAACAAATCCAAACTTGCACAGGGGTTTGGCCCCAAGTATGATCAACTTTGGTGCACGGAATTGATCATGGTTATCATGTGACTTCACAAGCTTATACTGGAAGCAACATTCTCCCTAATGCATCCTCTATTGAGTCCACGGT</genome_strand>
        <mrna_strand>ACTTATCATATTGTTGCTAGCAGACCTGTGTTTATTTAAACATAATTTTGGCATTTAAGCATTCATGTTTCTTTCTCCTACTTCAACAAACATACACAAATTTAAGCAAGTAAAAGTTTTTCCTGGTTCATCGTATCCTTCCAACTTTTGCTGCCTTACATTGGAGCAAGTAAGCTGGATAAGGAAAGATATATCCAAGAAATGGCTGCTTATGAACAGCATAAGAACAAAGAAACTACAACAAATCCAAACTTGCACAGGGGTTTGGCCCCAAGTATGATCAACTTTGGTGCACGGAATTGATCATGGTTATCATGTGACTTCACAAGCTTATACTGGAAGCAACATTCTCCCTAATGCATCCTCTATTGAGTCCACGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576302" ref_strand="+" ref_description="SGN-U576302 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|16904226|gb|AAL30820.1|AF435452_1 (e_value=1e-66) calcium/calmodulin-dependent; (*ATH) AT3G50530.1 (e_value=2e-55) | Symbol: None | calcium-dependent protein kinase, putative / CDPK, putative, similar to calcium/calmodulin-dependent protein kinase CaMK3 (Nicotiana tabacum) gi:16904226:gb:AAL30820 | chr3:18764522-18767754 FORWARD | Aliases: T20E23.130; (*SWP) sp|P53681|CRK_DAUCA (e_value=6e-51) CDPK-related protein kinase OS=Daucus carota GN=CRK; ">
      <seq>atctatggccttggtgttttctattttacttttttcttaaaatagtatatatttttggacaaaaaagcgaacatctcgtcgtttcctttttatcgccttctgtactctgcagatccatcttcttcatctctctttcaacacaaattcaaacttcaaactaaacaaatttccgctaatttttactaatttcgttttcgtgcaattttctcaacctttgagagctaactgagcttttcttttttttggcttgatttgtttttcaagtacattgggttgtttctgaaaccccaatgggtgcttgtacttctagaccctcaaattatgccggggacagtaatggcaacagagccacacttccggtgaaatctactccgaacaataatgaggacggtaacagtcatcagcaagaaaggacgaaaaaggacgaagctgatgtaggtaaaaagtcaccttttttccctttctacagtcctagtccggcgcattatttgttctccaagaaatctccgttgagatctccggcgaatgccagcactaattctactcctcgaaggttttttaaacggccatttcctccgccgtctccagcgaaacacatccgtgctgtgttggctcggcgacacggctctgtgaaaccgaatgagtctgcgattcccgaagtaaatgaaacggaggttggcggtggcggtggaggcggcgcggggcttgataagagttttggattttcgaagaattttgggaacaagtatgagctgggagaggaagttggaagagggcattttggatatacttgtaaagctaagttcaggaaaggtgaagttaaaggacaagaagttgctttaaaagtcatccccaaatcaaagatgactactgcaatagccattgaggatgtgagaagaaaggtgaagaaattaagagctttgacaggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="85226" stop="88104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85526" g_stop="86389" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="863" r_length="863" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86390" i_stop="87735" i_length="1346">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87736" g_stop="87804" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="932" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U576302" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85526" e_stop="86389"/>
          <exon e_start="87736" e_stop="87804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATGGCCTTGGTGTTTTCTATTTTACTTTTTTTCTTAAAATAGTATATATTTTTGGACAAAAAAGCGAACATCTCGTCGTTTCCTTTTTATCGCCTTCTGTACTCTGCAGATCCATCTTCTTCATCTCTCTTTCAACACAAATTCAAACTTCAAACTAAACAAATTTCCGCTAATTTTTACTAATTTCGTTTTCGTGCAATTTTCTCAACCTTTGAGAGCTAACTGAGCTTTTCTTTTTTTTGGCTTGATTTGTTTTTCAAGTACATTGGGTTGTTTCTGAAACCCCAATGGGTGCTTGTACTTCTAGACCCTCAAATTATGCCGGGGACAGTAATGGCAACAGAGCCACACTTCCGGTGAAATCTACTCCGAACAATAATGAGGACGGTAACAGTCATCAGCAAGAAAGGACGAAAAAGGACGAAGCTGATGTAGGTAAAAAGTCACCTTTTTTCCCTTTCTACAGTCCTAGTCCGGCGCATTATTTGTTCTCCAAGAAATCTCCGTTGAGATCTCCGGCGAATGCCAGCACTAATTCTACTCCTCGAAGGTTTTTTAAACGGCCATTTCCTCCGCCGTCTCCAGCGAAACACATCCGTGCTGTGTTGGCTCGGCGACACGGCTCTGTGAAACCGAATGAGTCTGCGATTCCCGAAGTAAATGAAACGGAGGTTGGCGGTGGCGGTGGAGGCGGCGCGGGGCTTGATAAGAGTTTTGGATTTTCGAAGAATTTTGGGAACAAGTATGAGCTGGGAGAGGAAGTTGGAAGAGGGCATTTTGGATATACTTGTAAAGCTAAGTTCAGGAAAGGTGAAGTTAAAGGACAAGAAGTTGCTGTAAAAGTCATCCCCAAATCAAAGGTTTGGCATTTTCTGATACTCTCAATTTTCTTTCAAGTTTGATTTAACTGTTATGATCTATCATCTCTGTGGTCAAAGTTTGTTGGATTTTTCTCTTTTTTACTACTTGAGTATTAGTGGTCAGATCTACTCTAGAGATTGTAGTCTTTGACTTTGTTATCTTTCTATTTTCAAATGTCCTTTTTGTACCACTTATTGTTTTTGTTTTCCAGATGGATCCATCATCTACTGTTTCCTTAGGAGGTATAGTAGATGATAGCATAAAGCTTAATTTATTTGGCAATTAAGTTTAAAGGTTGTGAAGTGATGGAATGAGGAAGCTTTTCGCAGCTTCTGTTGCAGTGGCATACGTGATTATATTTGTTATATGCTGATTACTGTTTCAAAGGAAGCAATTCAATCTTTGCAGTGCACTGAAGTCTAAAGTTTTTATTGAACTGTTCTTGGAGTCCGAAAATTATCTGTTCAATTGTCCATAAGATGCACTGAGTTTGGATTAACAGTGAGTTAATAGAGTATCGACATTATAATTGGATGCGATGAAAAGAGGAATAACAACTTAAGGGTCTAAGGGAAGTCAAGGAAGAGGGGTGATGTTATTGTCCCATTTTTTGTATTGATGTCCAAGAGTTACAATTTGAGTTTGAAATTCCAAACTTTCGACATGATCATTGAGGTGAGACTACTGGTATTTGTCCTACCCAAAGAATTCACAAACTTTACAAAAGTTGGTTCAAGTGGGTCTATATACGATGTCGGATGACTTGGTTTTGTTTGTTCCTGAAGGCTGGTTTGTTCCATCTGATGTTCATGTTCCTTATTTGGTTTAGAAGTAAAGAGAAAAGGAACAATATCCAGACTAAAGTAGCTCTCTTTTGTTTTTAAAAAACAGAAGTAAATGGAGAGATGGAGTCAAATGTGTTCTCTTTGTCTTCTAGTTGTACAAGTAACACGAGAAGGAGAAAACAATTTATTTCAATAAGTTAAGAAATAACACTCCCTCCCACAACTCCCCTCCCCTTCCTCTCCAAAATCATACATTTTGTAGAGTTTAAGGGCTCTTAAGGTCTGCGTATATCCTATCCTCCCCAGACTGCACTTATGGGATTACACTGGTTATATTGTTGTTGTCGTTACAGCAGCAAAATCTTCTTGAAATAGGTGTCCCACCCCCCCCCCCTCCAAATTTCTGCTGTTTGTAGCTTGATTTTTCTATTTTGCTTGAATATTCCCTAATATAAGTTGATGCATGCCTATTGTTGTTCAGAATGTGCGGTCAGTGGTTTTTTTAATTCTCTTCTGGTGATTTATTTGAAATATATGATCATATTCATTTCCTTTTCCAGATGACTACTGCAATAGCCATTGAGGATGTGAGAAGAGAGGTGAAGATATTAAGAGCTTTGACAGGACAT</genome_strand>
        <mrna_strand>ATCTATGGCCTTGGTGTTTTCTATTTTAC-TTTTTTCTTAAAATAGTATATATTTTTGGACAAAAAAGCGAACATCTCGTCGTTTCCTTTTTATCGCCTTCTGTACTCTGCAGATCCATCTTCTTCATCTCTCTTTCAACACAAATTCAAACTTCAAACTAAACAAATTTCCGCTAATTTTTACTAATTTCGTTTTCGTGCAATTTTCTCAACCTTTGAGAGCTAACTGAGCTTTTCTTTTTTTTGGCTTGATTTGTTTTTCAAGTACATTGGGTTGTTTCTGAAACCCCAATGGGTGCTTGTACTTCTAGACCCTCAAATTATGCCGGGGACAGTAATGGCAACAGAGCCACACTTCCGGTGAAATCTACTCCGAACAATAATGAGGACGGTAACAGTCATCAGCAAGAAAGGACGAAAAAGGACGAAGCTGATGTAGGTAAAAAGTCACCTTTTTTCCCTTTCTACAGTCCTAGTCCGGCGCATTATTTGTTCTCCAAGAAATCTCCGTTGAGATCTCCGGCGAATGCCAGCACTAATTCTACTCCTCGAAGGTTTTTTAAACGGCCATTTCCTCCGCCGTCTCCAGCGAAACACATCCGTGCTGTGTTGGCTCGGCGACACGGCTCTGTGAAACCGAATGAGTCTGCGATTCCCGAAGTAAATGAAACGGAGGTTGGCGGTGGCGGTGGAGGCGGCGCGGGGCTTGATAAGAGTTTTGGATTTTCGAAGAATTTTGGGAACAAGTATGAGCTGGGAGAGGAAGTTGGAAGAGGGCATTTTGGATATACTTGTAAAGCTAAGTTCAGGAAAGGTGAAGTTAAAGGACAAGAAGTTGCTTTAAAAGTCATCCCCAAATCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTACTGCAATAGCCATTGAGGATGTGAGAAGAAAGGTGAAGAAATTAAGAGCTTTGACAGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572398" ref_strand="+" ref_description="SGN-U572398 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|16904226|gb|AAL30820.1|AF435452_1 (e_value=0) calcium/calmodulin-dependent; (*ATH) AT3G50530.1 (e_value=0) | Symbol: None | calcium-dependent protein kinase, putative / CDPK, putative, similar to calcium/calmodulin-dependent protein kinase CaMK3 (Nicotiana tabacum) gi:16904226:gb:AAL30820 | chr3:18764522-18767754 FORWARD | Aliases: T20E23.130; (*SWP) sp|P53681|CRK_DAUCA (e_value=0) CDPK-related protein kinase OS=Daucus carota GN=CRK; ">
      <seq>aagagctttgacaggacatagcaatttactcttattttatgattcatatgaagaccacaccaatgtctacatagtcatggagctgtgtgaaggaggtgagcttttggatagaatactctctagaggtggaaagtactcggaggatgatgcaaagactgtaatgatacaaatactgaaagttgttgcattttgccaccttcaaggtgtggtacaccgggatcttaagccagagaatttcttatttacgtctaaagaggaaaatgcacaacttaaagcaatagactttggactttctgattttgtgaagccagatgaaagacttaatgatatagttggtagtgcatattatgttgcgcccgaggttctacatagatcttatagtacagaggctgatgtttggagtataggtgtcatagcatatatcctattgtgtggaagccgtcctttttgggctcgaacagaatctgggatatttaggtctgtcctcaaagctgatccaagttttgaagaacagccctggcctacattatcttctgaggcgaaagactttgtgaaacgtctattgaataaggatccccggaaaagaatgactgctgctcaggctttgggtcatccatggataaagaatagtcacaacatagaagtgcctttggatattctgatattcaaactgatgaaggcttacatgcggtcctctgctcttaggaaagctgcactacgggctttgtcgaagacattgacagtagatgagctattctatttgaaggagcagtttgcactgctacaaccaagcaaaaatggcaccataagctttgaccatgttaaaacggtcctgatgaaacatgcaacagatgcaatgaaagaagctcgcatccatgattttcttgcatcgcttaatgcgctgcagtacaggaggatggattttgaagaattttgtgctgctgcattaagtgttcatcagcttgaggcttttgatcgttgggaacaacatgcacgttgtgcctatgaaatctttgagaaggaaggcaatagggccattatgatagaagaattagcttcggaacttggtcttagcccttcggttcctgtccatgctgttctacatgactggctcaggcacactgacggaaagctcagttttcttggttttgcaaagttgttgcatggagtgtctagccgttcaattgcaaaagttcaatgattcaagccccactgaatcagaaaatggttctcttggtgtatctacattcttgtcatgaatacattgtttgacagtcaaatgagcttgggagtgacgaatggagaagatcaatttatgcccctcagtctggagcttcatagatctcattattttctcatgagattccgcggaacatcattcctggagaggatgagaggtttgaccgccgtgtgttatcagagcagtgacatcctgcatatagagttcttactgtaaagctgtagttagttatgtttgattgcaggtgagagtacttctcagctggtttttggtcgcacactaggtgttttaacttgttggacatgcgctgatgtctacaattgcattgtgtaatgttgtctgcatgtttttatagttaagaagttccaccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="87486" stop="91161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87786" g_stop="87866" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87867" i_stop="88110" i_length="244">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88111" g_stop="88152" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="123" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88153" i_stop="88251" i_length="99">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88252" g_stop="88360" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="232" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88361" i_stop="88773" i_length="413">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.588" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88774" g_stop="88852" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="311" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88853" i_stop="88989" i_length="137">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88990" g_stop="89286" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="608" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89287" i_stop="89368" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89369" g_stop="89481" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="721" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="89482" i_stop="89650" i_length="169">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89651" g_stop="89758" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="829" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="89759" i_stop="89840" i_length="82">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="89841" g_stop="89903" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="892" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="89904" i_stop="89993" i_length="90">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="89994" g_stop="90161" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="1060" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="90162" i_stop="90310" i_length="149">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="90311" g_stop="90864" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1061" r_stop="1614" r_length="554" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U572398" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87786" e_stop="87866"/>
          <exon e_start="88111" e_stop="88152"/>
          <exon e_start="88252" e_stop="88360"/>
          <exon e_start="88774" e_stop="88852"/>
          <exon e_start="88990" e_stop="89286"/>
          <exon e_start="89369" e_stop="89481"/>
          <exon e_start="89651" e_stop="89758"/>
          <exon e_start="89841" e_stop="89903"/>
          <exon e_start="89994" e_stop="90161"/>
          <exon e_start="90311" e_stop="90864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCTTTGACAGGACATAGCAATTTAGTAAAATTTTATGATTCATATGAAGACCACACCAATGTCTACATAGTCATGGAGTAAGCTTCATCACTCAACTCCCATCACATTTACATTTGCAATGGGGTTCAGTCTCAAACTTAGGTTGAGAGAAAACTTTATTGGAAAGTAACCAGAGTTTCAAGTACATGACAGTTTGTTTATTTTCTCAGCAAACATTTGTGTTCAATTATGATGTTTTGCTCTTATCAGGAGCTTTATCTGCTAATTTACTTATCACACCGCTCTTTTGAAATACTACTGATTAATCTTGTTATATTTCAGGCTGTGTGAAGGAGGTGAGCTTTTGGATAGAATACTCTCTAGGTAGTTCTTGATCTTTCCTATGTTTCAACATTTTTGAATTTGAACCTTGTGTTTTAATTGATAGAGAAGGTGCTAAGTTGTAGTGTTCTTGTCCTGCAGAGGTGGAAAGTACTCGGAGGATGATGCAAAGACTGTAATGATACAAATACTGAAAGTTGTTGCATTTTGCCACCTTCAAGGTGTGGTACACCGGGATCTTAAGCCAGAGGTGGGAGGACTAAAGTTCTCACTCTATGATTGCTTTAGAACAAACAACATTTCAGCATATCTAGATATTTTACCCTGTGTAGAAGGGAGAAATTTTTTTTGCACAAAAAAACGCCTTTTTCTTTACTGGGTCTTGGATTATGTTAATATTCCAACTGCAATAAATTTTCTTTCAGTTTCAAGTTGTGTAGATATATTATTCATCAGGCAGACTTAATGTTTGTTTCATCTGGTATTAGAGTTTAGGAACTAAATTGTTTAGCTAGCAAGTGACAGAGAAGCTCAAATGTACAGCCGTGGCATTTTTCTGTGGCTGAATCTATCACTTGTTGGAGAAGCTATGACATATGTTTCAGTAAACCTTCCTCTCTATCATACTGTCCGTCGTCTAATTCTAGCTTTCTGATTGACCAGAATTTCTTATTTACGTCTAAAGAGGAAAATGCACAACTTAAAGCAATAGACTTTGGACTTTCTGATTTTGTGAAGCCAGGTTAGTCCATTACTGCATCTCTGTAACCACTCCCCTCCCCACCCAAAAAAAAGGAGAGTAGAAAAAAAAGAACTACCTTTCATAAAATTTGAGAACCTCACCAACTTGTTTACGTGCCTTGCTCAATTACTTTGCAGATGAAAGACTTAATGATATAGTTGGTAGTGCATATTATGTTGCGCCCGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCCTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCTGCTCAGGCTTTGGGTGAGTTTCTTGAGTTATATTGGAAAATACAATCTTTTGTTCTTTAAATTTCTGCAAACTGCTGAACTACTTACTGTCTCAGGTCATCCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGGGTGTGTATGATGCTACCATGAAAAGTTTTTGTGTTCCCATTTTATCTTCCGAGTCCAGTGCTATATGTCAAGTAATGAAGCTCTATTTTGTACCGCATAGTATTTGCTGAAATTCTGACTAATCTTTTGCATTGTTCTTCATGGCATTGTCATTCTACAATTTTTGCAGGCTTTGTCGAAGACATTGACAGTAGATGAGCTATTCTATTTGAAGGAGCAGTTTGCACTGCTACAACCAAGCAAAAATGGCACCATAAGCTTTGACCATGTTAAAACGGTTTGTCTTTTGGAATAAAGAACGATTTATTAGTTTCTTCTTGTATCTTTCATGTTTTTGCTGATCTTCATGATTTTACCAGGTCCTGATGAAACATGCAACAGATGCAATGAAAGAAGCTCGCATCCATGATTTTCTTGCATCGGTAGATTTTGAGATCCTATTGACTTCAGATATTTAACTGGTGTTGTCATTGTTATGGGTTTAATAAATACTCCTTGTTCTTGTCATGCAGCTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCGGTAATCATGGTTCATTTTTTGTTCTGAATATTGATTGCCACGTGTTAGTCTCTTATATAACTGTCTCGTTTTTTCCTTTTCGGGAGAGGAGAGTGTGCAATTGATTGGGAAAGCAATCTAACTGAATTTAATTCAAATTTTTGGTCCAGGAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTCAAGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCTACATTCTTGTCATGAATACATTGTTTGACAGTCAAATGAGCTTGGGAGTGACGAATGGAGAAGATCAATTTATGCCCCTCAGTCTGGAGCTTCATAGATCTCATTATTTTCTCATGAGATTCCGCGGAACATCATTCCTGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCGCACACTAGGTGTTTTAACTTGTTGGACATGCGCTGATGTCTACAATTGCATTGTGTAATGTTGTCTGCATGTTTTTATAGTTAAGAAGTTCCACCACTT</genome_strand>
        <mrna_strand>AAGAGCTTTGACAGGACATAGCAATTTACTCTTATTTTATGATTCATATGAAGACCACACCAATGTCTACATAGTCATGGA....................................................................................................................................................................................................................................................GCTGTGTGAAGGAGGTGAGCTTTTGGATAGAATACTCTCTAG...................................................................................................AGGTGGAAAGTACTCGGAGGATGATGCAAAGACTGTAATGATACAAATACTGAAAGTTGTTGCATTTTGCCACCTTCAAGGTGTGGTACACCGGGATCTTAAGCCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCTTATTTACGTCTAAAGAGGAAAATGCACAACTTAAAGCAATAGACTTTGGACTTTCTGATTTTGTGAAGCCAG.........................................................................................................................................ATGAAAGACTTAATGATATAGTTGGTAGTGCATATTATGTTGCGCCCGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCCTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCTGCTCAGGCTTTGG..................................................................................GTCATCCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGG.........................................................................................................................................................................GCTTTGTCGAAGACATTGACAGTAGATGAGCTATTCTATTTGAAGGAGCAGTTTGCACTGCTACAACCAAGCAAAAATGGCACCATAAGCTTTGACCATGTTAAAACG..................................................................................GTCCTGATGAAACATGCAACAGATGCAATGAAAGAAGCTCGCATCCATGATTTTCTTGCATCG..........................................................................................CTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCG.....................................................................................................................................................GAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTCAAGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCTACATTCTTGTCATGAATACATTGTTTGACAGTCAAATGAGCTTGGGAGTGACGAATGGAGAAGATCAATTTATGCCCCTCAGTCTGGAGCTTCATAGATCTCATTATTTTCTCATGAGATTCCGCGGAACATCATTCCTGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCGCACACTAGGTGTTTTAACTTGTTGGACATGCGCTGATGTCTACAATTGCATTGTGTAATGTTGTCTGCATGTTTTTATAGTTAAGAAGTTCCACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602569" ref_strand="+" ref_description="SGN-U602569 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ttttattttaacatgtaatatgtggaatatggatggacagattttatctacaccctctttttatttgtagacatcttaataaagagtttactctatttagtgtcatgtcatgggatatgaaaacgcatcaaatctttgtagttcgtcttgactttgtatttatgtatactatgcacactctgtagagtttcacattctcatggatttgactctttttgtgattcaaatacatttggtatactcactaattagtaatgttggatccttgctcacctacttgtattgttgagtgatgcatgtaactgagaaaaataattaaattccagaaacagaacaagggggagccaaaccatgaaaaagggaaacacattcaacttctaattttcaagactaaaggtacaatttcacatcctttttcaggcttttgaaattgtaggtctctttttcttgaaatcgaaccgcaatgttctattttgaatggtgttgtagtagtatttagtagttattcttggatagaagttacaactttagtattagatacaaaaaagtttaaaatacttcacatgtagagtcgactttatagcagttctgggattgagagactaatgatggttgggaatgatttggtaatattcatttccttatgagggtatatgtgtgattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="94074" stop="92807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93774" g_stop="93107" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-U602569" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93774" e_stop="93107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTAACATGTAATATGTGGAATATGGATGGACAGATTTTATCTACACCCTCTTTTTATTTGTAGACATCTTAATAAAGAGTTTACTCTATTTAGTGTCATGTCATGGGATATGAAAACGCATCAAATCTTTGTAGTTCGTCTTGACTTTGTATTTATGTATACTATGCACACTCTGTAGAGTTTCACATTCTCATGGATTTGACTCTTTTTGTGATTCAAATACATTTGGTATACTCACTAATTAGTAATGTTGGATCCTTGCTCACCTACTTGTATTGTTGAGTGATGCATGTAACTGAGAAAAATAATTAAATTCCAGAAACAGAACAAGGGGGAGCCAAACCATGAAAAAGGGAAACACATTCAACTTCTAATTTTCAAGACTAAAGGTACAATTTCACATCCTTTTTCAGGCTTTTGAAATTGTAGGTCTCTTTTTCTTGAAATCGAACCGCAATGTTCTATTTTGAATGGTGTTGTAGTAGTATTTAGTAGTTATTCTTGGATAGAAGTTACAACTTTAGTATTAGATACAAAAAAGTTTAAAATACTTCACATGTAGAGTCGACTTTATAGCAGTTCTGGGATTGAGAGACTAATGATGGTTGGGAATGATTTGGTAATATTCATTCCCTTAATGAGGTATTATGTGTGATTTTGA</genome_strand>
        <mrna_strand>TTTTATTTTAACATGTAATATGTGGAATATGGATGGACAGATTTTATCTACACCCTCTTTTTATTTGTAGACATCTTAATAAAGAGTTTACTCTATTTAGTGTCATGTCATGGGATATGAAAACGCATCAAATCTTTGTAGTTCGTCTTGACTTTGTATTTATGTATACTATGCACACTCTGTAGAGTTTCACATTCTCATGGATTTGACTCTTTTTGTGATTCAAATACATTTGGTATACTCACTAATTAGTAATGTTGGATCCTTGCTCACCTACTTGTATTGTTGAGTGATGCATGTAACTGAGAAAAATAATTAAATTCCAGAAACAGAACAAGGGGGAGCCAAACCATGAAAAAGGGAAACACATTCAACTTCTAATTTTCAAGACTAAAGGTACAATTTCACATCCTTTTTCAGGCTTTTGAAATTGTAGGTCTCTTTTTCTTGAAATCGAACCGCAATGTTCTATTTTGAATGGTGTTGTAGTAGTATTTAGTAGTTATTCTTGGATAGAAGTTACAACTTTAGTATTAGATACAAAAAAGTTTAAAATACTTCACATGTAGAGTCGACTTTATAGCAGTTCTGGGATTGAGAGACTAATGATGGTTGGGAATGATTTGGTAATATTCATTTCCTT-ATGAGGGTATATGTGTGATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564695" ref_strand="+" ref_description="SGN-U564695 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|147784629|emb|CAN74932.1| (e_value=1e-72) hypothetical; (*ATH) AT5G66840.1 (e_value=1e-64) | Symbol: None | SAP domain-containing protein, contains Pfam domain PF02037: SAP domain | chr5:26710148-26712522 REVERSE | Aliases: MUD21.10, MUD21_10; ">
      <seq>gaatgagaatgggtagtctcttgttgaaatgatggaaaggagtagggcaaaacgttgtgtgattgagatttcctcttcttccgagcaagaaaatggtgacgatgaaggaggaggagaaagttcagaagaatcagtacaaatattaggatcggatgacgattttgatgccgctagtacatatgattttgacgactctgcctcaagcgagagcaacggtgattccgaagatgaggaggaagacgagtcttccccgtctcaacaacatggtgatgaggatatccaagaggaaggtgaggaatcgggtagcgaaagagtgcttcagcttctccaaggtggtggagaattgaggaagctaattgaaggattggggaagctcgctttgacggactataaagcatatttgcgatcaaatggattgaggttatcaggtacaaaagaagaatgtatacagaggatcatagagcactggaggattaaagatggaaatggtcaaagacaatatcccagatcatcttttaccataaactgcactggtgacgtatgtaaaggagatgttgtattatttcaacagaaagtgtacaagaagtttgaaaagatgagaaggggtggagaacaatcagggaagagaaccattgctggtaggattgtcaaggagagctatggcgctgccaaacagcagcatacctttacggttgaggtgttatggagccaaggggttaaacaattacctacactttttccattgcttgtgaagggacgaaacctttataagatgaagactttcagacagagatggagggatgaagaggaaagactagaagtgctcggagagaagcacaaacgtggagatgcagcgagatttattagagcaacaagaaaatcaaaatcaacaaagccgacaaaagcatcctctaaaaacaaaggtaacaagcgccagaaacttgatcatcatatgaggccaagcaaaatgatgcagacaagcaatgtaaagaaacataatcattctattgatgaacgtgggaaagcaatggcaggaagtaaaagaacgaaaaaacatcagcgaaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="96390" stop="99884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96690" g_stop="96893" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96894" i_stop="96988" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96989" g_stop="97116" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="332" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97117" i_stop="97763" i_length="647">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97764" g_stop="97902" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="471" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97903" i_stop="98384" i_length="482">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98385" g_stop="98446" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="533" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98447" i_stop="98567" i_length="121">
            <donor d_prob="0.164" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98568" g_stop="98619" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="585" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98620" i_stop="98710" i_length="91">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98711" g_stop="98816" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="691" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98817" i_stop="99024" i_length="208">
            <donor d_prob="0.479" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="99025" g_stop="99123" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="790" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="99124" i_stop="99207" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="99208" g_stop="99340" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="923" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="99341" i_stop="99438" i_length="98">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99439" g_stop="99584" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="924" r_stop="1069" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U564695" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1069</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96690" e_stop="96893"/>
          <exon e_start="96989" e_stop="97116"/>
          <exon e_start="97764" e_stop="97902"/>
          <exon e_start="98385" e_stop="98446"/>
          <exon e_start="98568" e_stop="98619"/>
          <exon e_start="98711" e_stop="98816"/>
          <exon e_start="99025" e_stop="99123"/>
          <exon e_start="99208" e_stop="99340"/>
          <exon e_start="99439" e_stop="99584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAGAATGGGTAGTCTCTTGTTGAAATGATGGAAAGGAGTAGGGCAAAACGTTGTGTGATTGAGATTTCCTCTTCTTCCGAGCAAGAAAATGGTGACGATGAAGGAGGAGGAGAAAGTTCAGAAGAATCAGTACAAATATTAGGATCGGATGACGATTTTGATGCCGCTAGTACATATGATTTTGACGACTCTGCCTCAAGGTATTGGTTTCCTATATTATGCCTCAATTCTAAACTAATTTTGCTAGGGTATATCAATGATTTATGTTCATATCAATTTTGGATTATTTGGCCAGCGAGAGCAACGGTGATTCCGAAGATGAGGAGGAAGACGAGTCTTCCCCGTCTCAACAACATGGTGATGAGGATATCCAAGAGGAAGGTGAGGAATCGGGTAGCGAAAGAGTGCTTCAGCTTCTCCAAGGTATGAAGATTTTCTGCCCTTAGGTTTCTGGTAATCTACTGATAAACTAAAGAAAACGAAGTTGCACTAAATCCCTATGTTTTTTGGGGAAACTTGATTGTTCTTCAACTAAATCCCTATGTTTTTTGTTTGTTGCTTTCTGCTAAATTGGGTTAAATGTTGGGGGGAAACGTCATGTGTTGTTTTTTAAAATTCTATTTCCCATCAAGAACAACTCATGACGTTTTCCAGGTGTTATTGGAGCCAAGTGAACATGAACAAATCTTTTTTATGGAAGTCCAGTTGATACTAGTTTTCCACATGAGCTTTTGTGGCCACAGAAAGGAAGGGTGCAAAGCAATATGGTTCCTATGTCCTGCCATTGGCCAGGATAGAACTGGTAAAAATTATATGTGAAGAAAATTTACTCATTATTCAAAAGAAAATTTGGGGTATTATCAATTATAATGTAAACTGTGGATCCTGACATTTATACACAGTGCACTTCTATACAAGGTTCATAACTTGATCTCTTTTCAAGGTGGAGATTAGGCAAATGCATAAATATTTTCCAACTATTTTCAAGTTTTCGTCGTATTTCGACTCTAAATTGGTTAGTTGCAGTATTCTCTAATATATGAATACATCACCTTTTGTGTGTTATATAGGTGGTGGAGAATTGAGGAAGCTAATTGAAGGATTGGGGAAGCTCGCTTTGACGGACTATAAAGCATATTTGCGATCAAATGGATTGAGGTTATCAGGTACAAAAGAAGAATGTATACAGAGGATCATAGAGCACTGGAGGTACGTCTTAGTGTAAGATGTAAACCTGATATATTTAAATGCAGCACTATATATATATATATTTTTTTTTTTTTGTGGTACAAGGATGGATCTCATTAATAGCTTGAGCTTCAAGCATTCAGATTGCCAAGTATGAGCAGCCAGCTTGAGATTGCATAAGAATATTTAAGAAAATGGGAGAAAACTTTAAAAATTACTGGTGCATATAGTCAAGCAAGTTAAAAACCCTGGTTTGCATCATTAGAGACTAGAAGTGCTCCATGACTTTGTTCCTACTTTATCATTCTAAATTTGCAACTGACTGCAAAAGTTCCGTTCTAAATCATACTGAAAATTCAACTAACTAGAAGTTGTGTTTTGGATTAATTGTAAATATGATCTTGTCACTCCATATTTTGAACTGTATTGTACCTTTTCCCAGTAGTCTTTCGTTCTTTTCCTCCTATGCTAATGGGAAGTCTTATTGCTTCATTTGTACACAGGATTAAAGATGGAAATGGTCAAAGACAATATCCCAGATCATCTTTTACCATAAACTGCACTGGTAGTTAATATTTGGCATCAGCCATCAATGACACCTCAGGATCTCTGTTTCATCTATGCTTCTTGTACTTCCCCTTTTGTTTTTGATCTTTGAGTGTTTAGGTTGGTGATTCCATGTGCAGGTGACGTATGTAAAGGAGATGTTGTATTATTTCAACAGAAAGTGTACAAGAAGTATTCACCTAATCGATTCTCCTGTTTGTTTCACAGTTTGTCAGTGTAGAGTGGTCTTTGCCTTTTGGATTAATCATGTTGTGTTTTGAAGGTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAGAGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACGGTAAGGCTCAAGAGAGAGTTTGAGCTCACTGAGATATCTGATTACAAGTGAAATAAACTTTTTCTGGGTGAGACTGAGAAATTATGGATATAAGCTTTCTTGAACACCTAGCAGTCTAGCACTATCAGTCTTCTAATAACCCTTTTGTGCAATTTCATATGCAAAGTTCTGCTAAATATATCTCCATCTACTTTTTGTGATTAACAAGGTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAGGTGAACCTGCCAGCCATTCTGGAGTACCTGTAGTTCTTATCAGATATTCTATCATTTTAACTGTTATTGCTGCTGGATAATCAGAGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAGGTGCATTTTACGGAAATTAAATTGATGCATCACCAGCTTTTCACTCAATACACACTAAAACTTTATGTTTACTGTAATGTAGTTTTTGTTACATGTAGGTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAAACATCAGCGAAAGCCT</genome_strand>
        <mrna_strand>GAATGAGAATGGGTAGTCTCTTGTTGAAATGATGGAAAGGAGTAGGGCAAAACGTTGTGTGATTGAGATTTCCTCTTCTTCCGAGCAAGAAAATGGTGACGATGAAGGAGGAGGAGAAAGTTCAGAAGAATCAGTACAAATATTAGGATCGGATGACGATTTTGATGCCGCTAGTACATATGATTTTGACGACTCTGCCTCAAG...............................................................................................CGAGAGCAACGGTGATTCCGAAGATGAGGAGGAAGACGAGTCTTCCCCGTCTCAACAACATGGTGATGAGGATATCCAAGAGGAAGGTGAGGAATCGGGTAGCGAAAGAGTGCTTCAGCTTCTCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAGAATTGAGGAAGCTAATTGAAGGATTGGGGAAGCTCGCTTTGACGGACTATAAAGCATATTTGCGATCAAATGGATTGAGGTTATCAGGTACAAAAGAAGAATGTATACAGAGGATCATAGAGCACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAAGATGGAAATGGTCAAAGACAATATCCCAGATCATCTTTTACCATAAACTGCACTG.........................................................................................................................GTGACGTATGTAAAGGAGATGTTGTATTATTTCAACAGAAAGTGTACAAGAA...........................................................................................GTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAGAGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACG................................................................................................................................................................................................................GTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTACACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAG....................................................................................AGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAG..................................................................................................GTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAAACATCAGCGAAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565629" ref_strand="+" ref_description="SGN-U565629 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>aaaaataaaaagtatttttttaagacgaaacacttccgcaaatttctgtacatatgtttgaaattcgacatttactacaaggcaatgttccaaatgtcagtttaagacaccttgcactattttgtttatgtaaaccccttgctgctgctatgtgcagagcacaagtttgtgtgtaagagaaacaaaaagctaagagttccatctacgttcatagtttacaaatgggattgagtcagatgatctatcaatacccaacatgccagggggatgcggataattgttagactgagatacatacctagcgtatgaagaatttggataacttccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="100457" stop="99546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100176" g_stop="99846" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-U565629" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100176" e_stop="99846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAAAAAAATATCAATTTAAGACGAAACACTTCTGCAAATTTCTGTACATATGTTTGAAATTCGACATTTACTACAAGGCAATGTTCCAAATGTCAGTTTAAGACACCTTGCACTATTTTGTTTATGTAAACCCCTTGCTGCTGCTATGTGCAGAGCACAAGTTTGTGTGTAAGAGAAACAAAAAGCTAAGAGTTCCATCTACGTTCATAGTTTACAAATGGGATTGAGTCAGATGATCTATCAATACCCAACATGCCAGGGGGATGCGGATAATTGTTAGACTGAGATACATACCTAGCGTATGAAGAATTTGGATAACTTCCATG</genome_strand>
        <mrna_strand>AAAAAT-AAAAAGTATTTTTTTAAGACGAAACACTTCCGCAAATTTCTGTACATATGTTTGAAATTCGACATTTACTACAAGGCAATGTTCCAAATGTCAGTTTAAGACACCTTGCACTATTTTGTTTATGTAAACCCCTTGCTGCTGCTATGTGCAGAGCACAAGTTTGTGTGTAAGAGAAACAAAAAGCTAAGAGTTCCATCTACGTTCATAGTTTACAAATGGGATTGAGTCAGATGATCTATCAATACCCAACATGCCAGGGGGATGCGGATAATTGTTAGACTGAGATACATACCTAGCGTATGAAGAATTTGGATAACTTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571247" ref_strand="+" ref_description="SGN-U571247 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>cgagggaaaagtctcttccaatggattgtcaatttctcctcaacaagtgcctttgtctaatacattacacccaagtttgagaaaaacaagatccagcggatgaaaataccaacaaaaaaagaggcagcgctggattgtcaatttctcctcaaccaatagctctctctaataccattagagcaagttgaagaaaatataccatcaagttaaaagtggaaggaagaaccgagagaacaaagaaccagacctttttttaaatctccatctgttagactcgtaaattacttgatctaattacgtacaaacatgtcaaggacttgggcattggtcttgacatgaatgagggcaaaacagtgcaacacaggttcaaggtgtttgggtgttggcaaggcaacttgaacatgcaaggcttaagtgcgggctagagtcatcggcaaggcagcgtgttggcttgacaaggcaaaactgtgaagacttgacgatggtaagaacaaaggcattccacgtaaattgctgaaataaaaccaagtgttggaggacaactaaaatattctaagtgttggaagctggctgaaataatctaagtgttggaatgtaccctgaaatattctaagggttaaaatattaatatttcggggggataaagatgtaatttaaattagagtctatctgttagaaatatatctgttggaaacttagtttgaatcttgggatgacaagtgtcggacatgtgtcatttgtaactgccgcatgtaactcccatgggcagaaattttaataaggggggaaattttgtttaaggcttagaggagtgtgttttttggccttagacaaattcgggaagccttccctttgtattaattatcagattaataaaggttggacgagttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="110305" stop="120349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110600" g_stop="110693" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110694" i_stop="119060" i_length="8367">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119061" g_stop="119166" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="206" r_length="110" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119167" i_stop="119362" i_length="196">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119363" g_stop="120049" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="895" r_length="689" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U571247" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110600" e_stop="110693"/>
          <exon e_start="119061" e_stop="119166"/>
          <exon e_start="119363" e_stop="120049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCAACAAGTG-CTTTGTCTAATACATTACA-CCAAGTTTGAGAAAAACAAGATCCAGGTAATTAAGTTATATTTTTGCATATACTATATGATATTTATTATCTTCTTATACGAGCTAGCCAATTAGTAGAATGTGTACATACTAGCTTCCTTTATGATTTTGAGCAAATATTATGTGTTTGATATTCATAAAATTCTTGTTTTTTTTGTATATATTTAAATAAGAAAGAATGAGAACAAGAACATACATTTTTTGTATCCCTACAACACAAATGAGACACCCAAAAACTTGACAAAATGAGTTAACATAAATTAACTAGCCCCTACAGACTAAAATTAGGGCAACCTAGTGACCTAATCATCCTGCATTGACTAGGTCCCGGAAGGACCGACACTCTTTTGGTGTGTGAGGTGTGCAGCCTACCTTGATGCAAAGCATCAGGGGCTGATTCCAAAACGGCTTGAACCCGTAACTTATTGGTTACACGGAGACAATTTTATTGTTGCTCTCCAGGTGTATCTAAGAAATCAGTAGAAACTATGTACTAAAAATCGAAGCTACTGCAACATATGACAAAATCCATCAAAGTATTATCTCTATGCTTGGTTGGCTTCACACGACGTGTGATATTTTTTATTATCCAGCCCTGCGAAAGAACAATAATTAGAACTTGAATCCAAAATTTTAGAAAGAAAGGGGAAAGACTTTTGTTTGAACTTAGTGTAATGAGGTAGAGCGTGGATAAATTTGTGTAGTACCTTAAGTTCCACTAGTGGATCTTGGAGAATCCAAGGAAGCAAGGGTGGAATTTGGTGTACTTGTTAGTCCACTGTCACAGCAGTTGATTCTAGCAAACCAATTCTGTAACCAGTTTCTGGCTGGATGAAGAACTCCACAGTCACAATATTTGCTTATCTTTATGTATTGTGATGCCCATTTTACTATCACATCAATCAACCATGTGACAACACCAATTAACATGGATTCAATCCATTGCTTCCAATTCAGTCGAGCCGTGTTGCTAAAGACAACCTCTACTTCAATGAATCCGAACTGCAACACAAGATAGAGCCCAGACAATGCCCAAAACAAGTAATTTTGACCAAGACCTTTGAAAAAATTCTTCTGCTCTAAATCCCTTGCACTGAATATGTTAAAAAGCAGGCACAGAGCGAACCCGTTAAAGACTATAGATCTGTTAATTTTTGAAGTGACGCCGAGTATTGCACTTCCTCTGTGTTGAAGGAATACAAAAATGCCAGTCTGATAGGAAGCTTGAAGAAGTATGTTTCTCCACATAGCGTTGGTAATTGGTGGTTTTCTTGATATGATAAAATGCTCATCCCTTAGTTGTCTTGTGGCCTGTTGAGTAATTAGCAAAGCTGGCCCTCCAATAAATTTTACAAGAAGGTTAACCCATACCAACTGAACGACTGTTAATGGACCATCTCCGTCCAATATAACCAGTATGAAGTTTATTAATAAGCTACTGATTGCCAAGATTACCTCAACTTGGATGAATTGCCTCATATTCTCACAAACAATTCTTCCTCCTTTGATGCTGTTAATCACATAAGTTATAGTTTCAGGCCAGTTAGTCACCACAGGCAGGCTAAAATGAGCTGCTTCAAGAACCACATTACTTTCAGATGCTTGTTCTCCTACCACAGCCACCACTTCTCCTCTTTTCTTCAACTGCTCTATTAAAAGAAGCATGCATGTGGGAGAGGAATTTCCCATAATGCAAGTTTTATCAACGATTTCCTTTGTAGCATCTTCGCCCCTAACTACTAGAGCTTCACGTGAGTTGAGCAATCCTGTTTCATCAACAATGGTACAAAGCACTTCAACATCTTCTTCCGAGGCAAATATCATCTTCACTCCGCCTTCTTTCAGATTATCAATTCCTTGCCTCATGTTGTCTAGATTGAAAGCATCTTCTAAGACAAACCTACCAATGAATGTTAGTCCATTTTCATCAAGTTCTGCAACGCCATGAGTGTGTTTGAAGGCAAATGCAACTACCTTCATGTTGTTGTTGTTAGCTTGAGCAATGCCACTCTTTGTTCCGTCATCCAAATCATGCAATTCACCGGTCGTGTCATAGTAACTTGAACACATTGACAATATTGAATCAGTAGGGCCCTTGAAATATGAATAGTACTCTTTCCCATTGTCTCCACTTTTCTCCATGACAACTCTACAAGGTCCTTCAAAAGGATTCATCTCATCATCGTTGTCCTTCACTTTGGTGAACTGCTGATTGGAAGAGTCTCTCTGCATACCGCAGTTCTTCTCTACCCAACAGAGTATTGCTTGTTCTACTCTGTGGTAGGCTGTTTGAGAAGTCAGAGGGGACACACCAATTCCAGCAGAGAGAACATTGTAGACATGCGGGGGAATCTTGGCAACATCTTTTTTGTCAAGAAGAAACTGAGTAACTTTCAGTTTTTGCTCTTTCAACCAGCAAACTTTTTCTATACAGATGGTGTTGACTGGTTCCATCTTAACATCAAAAATTGGATACCAGTATGCCCTTGCTATTGAAATAAGAAATGGAACTCCTTCAGTTATCCCCACCAGTGAGATACCAAGAGAAGTTATCATAACTCTCACTGTTCCCTTTGATTCTGTCAAAACCTTCTTCACGGCATTCATTATCCGTGCAATTTCAGTTGGTTCTTCCTTGATTTCCAATCTATATCCGTTATCATCATCTTTATGCCCCAATTTAAAGCGAATGAACAGCACCACACTGATCAAAATGCCAATCGACAGCCCACTAATATGTATGTAATTGTTCAACTTGTCAAAGTCGGCACAGAAACTGGAGTCCGTTTCAGCAATAAACGGCTGGTCCTTCCTTGCTCTGTTCTCATTTTGCTTCTTCCAAATGTGTCTTTTGTACCAATTACGTGCTAGCTTAAACAAAACAATCACAAATATAATCACAACCAGAAGTGCTCCTTCAAACCAACCATTCTGCACACCTTCTTCTTTGATTCCAAAGACAAACGACAATATTGCTGCAACTGCAAGGAGCAAAATAGTTGGTTCCTTGCATACTAACTTTCGGATCATGAATTTGCCATATCCGGCGAAGATCAGCATGTGATGAGACAAGTCGCACCTAGAAATGTCTCCAACTTGAATTCCCTTGTCAACAGTACTCCCCTTCACTCCTTCAAAATTGTGAAGTGAATCCAACTTCACAATCTCTTCACTAATTTGTAAGCATTGCTGATGAGTACTCTGAAGCTCAATCTCGCAGTGATCATGGTTTGATTGTCCAACATTAACATGAGCTGAAGCTTCCACAATTTCAACAATCTGGATTTCATCTCCACCACCTTCAGAGTTCTGAGTAGACACAAAGCATATATAATCCCTCTAATTAATTTTATCAACATAACTAAAACTGTATACATAGATATTCTATATTGGTAGAATTTATTAGGAAATATAATGCATGCATCTAGGTGTATGTATTAGTGGTACCTTGTTTGATACACTTTTTCTTACTATGTATAACTAATGTTATACACTCTATTTTATATTACATATACCAAGTAATTTTAGATATTAATTATATATAGCATTTAAATACTTGCATTAGATTAAATAATTACAAAATTAAACTACCTTCAAAGCTTTTTAAAACATTTCCTAACTTCTTCTCTTCTTTTCATTTTCTTTCTTGTCATGTGTTTTATTTTTGTTGTTGCTTATTTTTCAATGTCTTTTAATTTGTTAGTGTCTTGATAGATTTTATGGGAGTTTTTGGTTAAAATTATATATGTCAACAATGATTTAAATCTAATGTACATCCTTATATTATCTAAGTGAGCAAAAAATATTCTTATACTATCTAAAAAATAACAAGAATCATTCTTCAGCCTATTTTTGTCAAAACATTGTTGAACCAATAAAAAAAATTTTGTTTAACTTGATCACGTCTGTGTCACGACGAAAAGATCAAAGTTATGTAATAAAAATAAGGATATGGATAGAAAATGAATCTTGAATTTAATTAAATTTCGTGTGTTGTTAGTTTATAGAGTATGTAATTTTGCATCATCTAGTAAACTGACTTGCACCAATACATAAGTTTTGAAATATTTATACAGTACGTCCGAAGGTTAGAAAGATTATGTAAAAAAGTCATTTCAAATATATTACTTCCAACTATTTAGAGATTTTCTTTAGTAAAATATTGAGGGGTGTATACTATATATACAATGTTCACATTTTATACAATTTACAAAAATGCTGGAAATTTAGTGAAATTACATAGGTATTTAGTTATTAAAAACAAAAAATAATTATTTTATTTGAAATTTTTGAAATTGGAGTAGTATTTTTTTCCCAAAGAATATTTAGAATTTGAATATATTTTGTCTGAATATAATTTAACCCTCAATTTCAAAAAATAAAAAAAAGTCACCTAACTTGATTAGTTTAACCATGTGTACATATATTCATTCGACTTGACACATTTTTTTTGGGGCGTGAGTTCTTAAAAAAATAGATAAAAGGATGAATGTTGCAACTTCTTGAATAGTTCAGGGATTTTTTTGTTCACTTATATAACACAAGTATGTAATTTAAGTTTTAGTCATACTTCAAAGATTATATTAGCCAAAAATTTGATTTTATGGCCTCTTAAGTAGTATCTTTTTTTTAAAAAAAAAATTAATTTTCAACATAATTTAATCAAAAAATTTACTTGTGGTGATAGATTTGACAAAAAAAATTATTTGCCAACTTTTCACAAAATTATTTTGATTCAAAATAGTATAACTATTTAATATTATTTTTAAAAGTAAGAAGAAAAAGAGGAGTTAAATGTTAATGATGTTTTAGCAAAGAACTTTGTTGCAAGTAATTGCAAAAATAAATAAAGTATGAAGAATATTTTTGTAAACACATATTTTTAAATATAAATTATGCAATATTTTGTTATTTCTAGTACATCAAACTAAACAACGTATAAGAACAGTGTTTGCATAACTAACGCAAGCATTACTAAGATACCTTATTTTGTACTATTCTTATACATTTTACCAAACGACTCTGAGTGAGAAGTGCGAAAATTAGGTCTTAGACTTTACTTACACCCTAAAGCTAATCTCATTAACCGTCAATATGAGACTTGTGTCATTATTTAACTCAAAAGCATAAAGTAAAGTTTAAAATACCATTTTACCCCTATCATAATTAAAAATGTTATAAATATCTAATAAGTTAAATATAAAGTAATTAAAATATTTTCACAACATTTTCACCTCCTAAATTATTTTTAAGCGAAAGAGTTATAAAGTGACCATATTTATCTATAAATTACAAGTGACACTAATTGATTATGATATTATGGATAAAGACTATGCCATAAATGTAACTCTGATAAGTTGTAACCACTTTGAACAAAATCGATCATTTATCGCTAAACATATATTTTTAGCAGCGATTATCACTTTTTTTTATATGTTTTTAAAGTCTTTAGCGACATTGATTCTAATAGCACTTAACAAATGCCGATAAAAAATTTAACACTTATTATTAATGTCAATATTTAATACTACTAAAAATTATTTTTGTTATAGTAAACAATATAAAAACTTAGAGGGACAAATCAATGATATAGTTGGAATAGGAAAAAGATAATGTTCTAAATACTCGATGTTAAGAAATATGTAAGTGTTTGGAAAGCTATCAGCCTAGTAAATTACACAACCTAATAATTATGTGGACTTGTTTGTTTGTCACAGTGTAATTACAAGTTGGGGTGTGCACTGTTTTGGGTTAAATCAAAAAATCAAACCAAATATTTATTTTGTTTAATTTTTTGGTTTAGTTTCAGATTTTAGAAAAATGAAAATCGAAAAATTGAACACACACATATATATAGAGAGAGAATTAAGTTGGAGTTAACCACTTTCTTTTTAGTTATTTTCATTATTATTTAATTTTTTTTTGTTTCGACATCTATAATTAATATACTTTTAAATATTGTATTTTACATTTTTAATATATATATATATATATATATATATATATATATATATATAAAATTCATTTTCAAATTACAAATATAACTTCGTTATGTTCTTAATTATTGCTATAACCGATCGAACCGAAAAAACTCAAACCATAAAAGAGAAAAATCAAACCAAATTTATTTTGGTCGGATTGAGTTACACTTCTTCAAAATCAAAAATTAAAAAATTCAAACCAAATAAAATCGAATGCACAACCCTAATTACAAGTGTAGTGTTTTATTGCACAAGTATAATCATAAGGTTATATTGAATTTTAAAAAATAAAAAATAATTATTTAAAATTTAAATTTATAAATGATATTAAATTGAATAATATTGCCTTTTGAAAATATATTAATTAATAAACCTACGTTCTTTGACTAGTATTATTAAAAATAATTTATCTATATTTTTCAATTTAGTATATTTTAATTATAAAAGTATGTAGTTGTAAAAGAAATGAAATATTGGAGTATTATTTATGCTTACTCCATGTTGAAGACTCAAGGTGGCATGAGTGTTGGATATTGATGAAAGTGATGATATGCTTGCTGCAGCTTCAATGAAGTTGTAAATAGATAGAAAAATGAACACCAACCTCCTCATGATCATCAAACTAAAATTACGTAATTCATCATTCATTGATAGCGGGAAACTCCGCTGAGCTTCAATGTCTTCATGATCCACCTCCATCATCCTACCTAGCTACCTGTATATATATATATATCTCACCTTTGATCAGCACTGTCGTCGTACTTCATGATCACTACTTCTTTTTTAAGATGTACCTAAGACGACCATGATATGATATGATTGAAAAGGATCTAACAAAAGCTACGTAAAAATATAGAGTGTGGCTGAGGGGAGGAAAGGGATTTTCCTAGCAACCTACTATTCCAACAACGCCATAATGAAGTCAATTTTGAATTAATATTCTAAACCTGATCCTTCAAACACCAAGACCACAATATACATAGGCAAAATTTGAACCAGATCAAACCAGTAATATTGTTTTTATTATGTATATACTCAGTGGCGGATCTAGGAATTTAAGGTTGTAGGTGTTTTAAAGTGAAAATATAAAAAAAATATGCGTGTTAACAGTGAGATTCGAACCTTGGTACAACAAGGCTAAAAAAATTTTAAATACCCATTCAGGAGCCATTGGGCCAACTAAATCATTTATTCATTGGGTGCTCTATGTTAATTTTATACAAATACCTATCAATTTCTACATAGATATATATATTTCGTAGCAAAGTTAATGGGTGCTCGAGGTCCGCCTCTGTTAATATACTCTGTGCGTCGACATTACTTTATGATTAACGATTGAATTTTTGCTAATTTTTTGAGAAAGTGAAATGCTTTTTATAAAATTCAATTGTATATTCTAGTCAAGTTTTTGTTTGAGGTTTGTATTATTCAGTTGGTCAAAGAGTTATGGAACTTATTTTCTCATTTCTACTTTCTAAAGCAATTCTGAAACGTAGCTTCCTAGAAAGTTCTCCTAGGCAATTAATTGCTGGTCAAGTGTGTGAGGTTTTTCACTCTCAGCCTTAGCTTTGTGTTACGAAATGTTAATATCATAATCCTTAGGCTGGTTGGTTCGTTTTTATAACGCGGTATTCACAATTTTTCATTTGATCCCACCATCACCACTACACCCCACACACACACACATTTTTGTCCATTTGACCATGAAAAAAGTGAGTATTTAAAAATATTCACCCTCCAACTTTGCTTTAAAAATCAAACTTTTCCTCAATTTTGAACAATCACCAAACTCCCCTGTATTCTATGCATTATTCATTTATATCACATATATATGTAATACCTCTTTATATTATATATAATTTATTTTTTAACCAAAGTATTTATAATTTTTTTCTTTAAGTTCATTAATATTATAAATAGAATAAATTTATCACAAAGTTTGATATTATTTTTATGACCTTTACGTTATTAAATTTGACTACTATTATTTTATGACGTTAGTTAATATTAAGGGTAGAAATAAAAAAAATTGATTAAAAATTCTTTTGATTTCATTAAGTGGAATCGATCAATTATTGTTGAGTTACATGTAATAATAGGGTAGACATGTATCAATTGTTCTTGCCCTGATATACATAAATACATAGTAATTAGTAAATACAAGTATACAACCAACATTAACGTGTGATTGGAGTTGAAAATTGGGGATATATGGGTGAAGTTTGAACAATTCTACCTTCAAATGTAGATGTTAATTGTTTCATTGCATTTTAGAAAAATATATATATATTTTTTTTAATGTCCAAGTATATTTTGTTGTTTCAACCTTCTAGATATTAATTATTTCTGTAAAATATTTTTGTGAGTCATCGTGCATTTTCTACTAATTTAGCGGATGAAAATAC-AACAAAAAAAGAGGCAGCGCTGGATTGTCAATTTCTCCTCAA-CAATAGCTCTCTCTAATA-CATTAGAGCAAGTTGAAGAAAATATA-CATCAAGGTAATTAAGATATATTTGTGCATATTATATGATATTTAATTTTTTATCTTCTTGCACGAGCCAATTGGTAGAATGTGCATGTACTGACTAGCTTCCTTAATGATTTTGAGCAAAATTCCATGTGTTTGAAATTCATAAAATTCTTGCTTTTTGTATATATTAGTACTATATACTAAGTTTGCATTCTTGAATTCAGTTAAAAGTGGAAGGAAGAA-CGAGAGAACAAAGAA-CAGACCTTTTTTTAAATCTCCATCTGTTAGACTCGTAAATTACTTGATCTAATTACGTACAAACATGTCAAGGACTTGGGCATTGGTCTTGACATGAATGAGGGCAAAACAGTGCAACACAGGTTCAAGGTGTTTGGGTGTTGGCAAGGCAACTTGAACATGCAAGGCTTAAGTGCGGGCTAGAGTCATCGGCAAGGCAGCGTGTTGGCTTGACAAGGCAAAACTGTGAAGACTTGACGATGGTAAGAACAAAGGCATTCCACGTAAATTGCTGAAATAAAACCAAGTGTTGGAGGACAACTAAAATATTCTAAGTGTTGGAAGCTGGCTGAAATAATCTAAGTGTTGGAATGTAGCCTGAAATATTCTAAGTGTTAAAATATTAATATTTCGTGTGGATAAGGATGTAATTTAAATTAGAGTCTATCTGTTAGAAATATATCTGTTGGAAACTTAGTTTGAATCTTGTGATGACAAGTGTCGGACATGTGTCATTTGTAACTGCCGCATGTAACTGCCATGTGCAGAAATTTTAATAAGGGTGGAAATTTTGTTTAAGGCTTAGAGGAGTGTGTTTTCTGGCCTTAGACAAATTCGTGAAGCCTTCCCTTTGTATTAATTATCAGATTAATAAAGGTTGGACGAGTTCCTTT</genome_strand>
        <mrna_strand>CGAGGGAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCAACAAGTGCCTTTGTCTAATACATTACACCCAAGTTTGAGAAAAACAAGATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATGAAAATACCAACAAAAAAAGAGGCAGCGCTGGATTGTCAATTTCTCCTCAACCAATAGCTCTCTCTAATACCATTAGAGCAAGTTGAAGAAAATATACCATCAAG....................................................................................................................................................................................................TTAAAAGTGGAAGGAAGAACCGAGAGAACAAAGAACCAGACCTTTTTTTAAATCTCCATCTGTTAGACTCGTAAATTACTTGATCTAATTACGTACAAACATGTCAAGGACTTGGGCATTGGTCTTGACATGAATGAGGGCAAAACAGTGCAACACAGGTTCAAGGTGTTTGGGTGTTGGCAAGGCAACTTGAACATGCAAGGCTTAAGTGCGGGCTAGAGTCATCGGCAAGGCAGCGTGTTGGCTTGACAAGGCAAAACTGTGAAGACTTGACGATGGTAAGAACAAAGGCATTCCACGTAAATTGCTGAAATAAAACCAAGTGTTGGAGGACAACTAAAATATTCTAAGTGTTGGAAGCTGGCTGAAATAATCTAAGTGTTGGAATGTACCCTGAAATATTCTAAGGGTTAAAATATTAATATTTCGGGGGGATAAAGATGTAATTTAAATTAGAGTCTATCTGTTAGAAATATATCTGTTGGAAACTTAGTTTGAATCTTGGGATGACAAGTGTCGGACATGTGTCATTTGTAACTGCCGCATGTAACTCCCATGGGCAGAAATTTTAATAAGGGGGGAAATTTTGTTTAAGGCTTAGAGGAGTGTGTTTTTTGGCCTTAGACAAATTCGGGAAGCCTTCCCTTTGTATTAATTATCAGATTAATAAAGGTTGGACGAGTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584485" ref_strand="+" ref_description="SGN-U584485 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157352065|emb|CAO43055.1| (e_value=3e-40) unnamed; (*ATH) AT3G22910.1 (e_value=1e-39)  Symbol: None | calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13), identical to SP:Q9LIK7 Potential calcium-transporting ATPase 13, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 13) {Arabidopsis ... ; (*SWP) sp|Q9LIK7|ACA13_ARATH (e_value=1e-38) Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13; ">
      <seq>ggtgactaactggcctgaaactataacttatgtgattaacagcatcaagggaggaagaattgtttgtgagaatctgaggcagttcatccaagttgaggtaatcttggcaatcagtagcttatcaataaacttcatactggttatagtagacggagatgcccccttaacaatatttcagttggtatgggttaaccttcttgttacatttattggagggccagctttgctaattactctactaagggatgagctttctatcagaccaagaaaaccgccaattaccaaagctatgtggagaaacatactttttcaagcttcttatcagactggcatttttgtattccttcaactcaaaggaagtgcaatactgggcatcactccaaaagttaacagatctatagtctttaacgggttcgctctgtgccagctttttaacattttcagtgcaagggatttggagcagaagaattttttcaaaggttttggtcaaaattacttgttctgggcattgtctgtgctctatcttgtgttgcagtttggattcattgaagtagaggctgtctttgtctttaccaacacggcacgactgaattggaagcaatgggttgaatccattttaattggagctgctacatggttggttgatgtgatagtaaaatgggcatcacaatacataaagatagacaaatattgtgattgtggaggtctttacctagctagaaactggttacagtattggtttatcaggatcaattgctgttactgtggacaaagaagtacacaaaacccaactcttgcttccttggattattcgagatccactagcggaaaggtaattcaaaaaatttatccatactgcctaattacagttacagttcttccctaaaattttggattcaagttgtagctgttgttcttttgcagggctggataacaaatatcacacgtcgtgttaaaccaacgaagcatagagctaatacttgttgcagtcgcttcaatttttagtagatagtttcctctgttctctatagacggttagatacagttggagcaacactaaagttatctcgatgtgacccatagcttatgggtaaatcagctgacccgtagattatgggttagagcagtactaaaatcagccttgtatcagggtacacacccttgaagggtgtcctttatagttagtttgtgttaattaatttcatcaagtttttcggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="-" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="132871" stop="131052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132571" g_stop="131352" g_length="1220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1220" r_length="1220" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="-" ref_id="SGN-U584485" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132571" e_stop="131352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGACTAACTGGCCTGAAACTATAACTTATGTGATTAACAGCATCAAGGGAGGAAGAATTGTTTGTGAGAATCTGAGGCAGTTCATCCAAGTTGAGGTAATCTTGGCAATCAGTAGCTTATCAATAAACTTCATACTGGTTATAGTAGACGGAGATGCCCCGTTAACAATATTTCAGTTGGTATGGGTTAACCTTCTTGTTACATTTATTGGAGGGCCAGCTTTGCTAATTACTCTACTAAGGGATGAGCTTTCTATCAGACCAAGAAAACCGCCAATTACCAAAGCTATGTGGAGAAACATACTTTTTCAAGCTTCTTATCAGACTGGCATTTTTGTATTCCTTCAACTCAAAGGAAGTGCAATACTGGGCATCACTCCAAAAGTTAACAGATCTATAGTCTTTAACGGGTTCGCTCTGTGCCAGCTTTTTAACATTTTCAGTGCAAGGGATTTGGAGCAGAAGAATTTTTTCAAAGGTTTTGGTCAAAATTACTTGTTCTGGGCATTGTCTGTGCTCTATCTTGTGTTGCAGTTTGGATTCATTGAAGTAGAGGCTGTCTTTGTCTTTACCAACACGGCACGACTGAATTGGAAGCAATGGGTTGAATCCATTTTAATTGGAGCTGCTACATGGTTGGTTGATGTGATAGTAAAATGGGCATCACAATACATAAAGATAGACAAATATTGTGATTGTGGAGGTCTTTACCTAGCTAGAAACTGGTTACAGTATTGGTTTATCAGGATCAATTGCTGTTACTGTGGACAAAGAAGTACACCAAATCCAACTCTTGCTTCCTTGGATTATTCGAGATCCACTAGCGGAAAGGTAATTCAAAAAATTTATCCATACTGCCTAATTACAGTTACAGTTCTTCCCTAAAATTTTGGATTCAAGTTGTAGCTGTTGTTCTTTTGCAGGGCTGGATAACAAATATCACACGTCGTGTTAAACCAACGAAGCATAGAGCTAATACTTGTTGCAGTCGCTTCAATTTTTAGTAGATAGTTTCCTCTGTTCTCTATAGACGGTTAGATACAGTTGGAGCAACACTAAAGTTATCTCGATGTGACCCATAGCTTATGGGTAAATCAGCTGACCCGTAGATTATGGGTTAGAGCAGTACTAAAATCAGCCTTGTATCAGGGTACACACCCTTGAAGGGTGTCCTTTATAGTTAGTTTGTGTTAATTAATTTCATCAAGTTTTTCGGTTC</genome_strand>
        <mrna_strand>GGTGACTAACTGGCCTGAAACTATAACTTATGTGATTAACAGCATCAAGGGAGGAAGAATTGTTTGTGAGAATCTGAGGCAGTTCATCCAAGTTGAGGTAATCTTGGCAATCAGTAGCTTATCAATAAACTTCATACTGGTTATAGTAGACGGAGATGCCCCCTTAACAATATTTCAGTTGGTATGGGTTAACCTTCTTGTTACATTTATTGGAGGGCCAGCTTTGCTAATTACTCTACTAAGGGATGAGCTTTCTATCAGACCAAGAAAACCGCCAATTACCAAAGCTATGTGGAGAAACATACTTTTTCAAGCTTCTTATCAGACTGGCATTTTTGTATTCCTTCAACTCAAAGGAAGTGCAATACTGGGCATCACTCCAAAAGTTAACAGATCTATAGTCTTTAACGGGTTCGCTCTGTGCCAGCTTTTTAACATTTTCAGTGCAAGGGATTTGGAGCAGAAGAATTTTTTCAAAGGTTTTGGTCAAAATTACTTGTTCTGGGCATTGTCTGTGCTCTATCTTGTGTTGCAGTTTGGATTCATTGAAGTAGAGGCTGTCTTTGTCTTTACCAACACGGCACGACTGAATTGGAAGCAATGGGTTGAATCCATTTTAATTGGAGCTGCTACATGGTTGGTTGATGTGATAGTAAAATGGGCATCACAATACATAAAGATAGACAAATATTGTGATTGTGGAGGTCTTTACCTAGCTAGAAACTGGTTACAGTATTGGTTTATCAGGATCAATTGCTGTTACTGTGGACAAAGAAGTACACAAAACCCAACTCTTGCTTCCTTGGATTATTCGAGATCCACTAGCGGAAAGGTAATTCAAAAAATTTATCCATACTGCCTAATTACAGTTACAGTTCTTCCCTAAAATTTTGGATTCAAGTTGTAGCTGTTGTTCTTTTGCAGGGCTGGATAACAAATATCACACGTCGTGTTAAACCAACGAAGCATAGAGCTAATACTTGTTGCAGTCGCTTCAATTTTTAGTAGATAGTTTCCTCTGTTCTCTATAGACGGTTAGATACAGTTGGAGCAACACTAAAGTTATCTCGATGTGACCCATAGCTTATGGGTAAATCAGCTGACCCGTAGATTATGGGTTAGAGCAGTACTAAAATCAGCCTTGTATCAGGGTACACACCCTTGAAGGGTGTCCTTTATAGTTAGTTTGTGTTAATTAATTTCATCAAGTTTTTCGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597747" ref_strand="+" ref_description="SGN-U597747 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gctccccttgactccttcaaaattgtgaagtgattccaacttcacattctcttcactaatttgtaggcattgttgatgagtacttagatcatgaggctgaagctcaatctcattgtttgattgtacagtataaacatcagccacagtttcaaccatctggaattcatctccaccaccttccgcgtcctaattagacagagagcatatataattaatatcatcaatatataactttaaactatatgcatatatatatgttttatatatacatactccatgtttaagattgaagctgggaagaggagtataaaaggttgtggtggaggatgatgagactcgtgaaagagatgctattcttgctccagcttcaatgaacttgtaagtagatttgaaaatgagcgccgacttcctcatgatcaaactagatttacccaattctccattcatcaacagcggggaacttcgctgagcttcaatgtctgatccattatcttcatgatccagctccatcatcttcgcctttgatcagnacatttttcttcttcttctgtatttattataaaatactaggaaagatcactatgatctgacacttaaaagattcagatagaataagatatgatggtaaggaactgatttttttgtatacatatttatagggaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="133838" stop="135104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134137" g_stop="134805" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U597747" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134137" e_stop="134805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCCCTTGACTCCTTCAAAATTGTGAAGTGATTCCAACTTCACATTCTCTTCACTAATTTGTAGGCATTGTTGATGAGTACTTAGATCATGAGGCTGAAGCTCAATCTCATTGTTTGATTGTACAGTATAAACATCAGCCACAGTTTCAACCATCTGGAATTCATCTCCACCACCTTCCGCGTCCTAATTAGACAGAGAGCATATATAATTAATATCATCAATATATAACTTTAAACTATATGCATATATATATGTTTTATATATACATACTCCATGTTTAAGATTGAAGCTGGGAAGAGGAGTATAAAAGGTTGTGGTGGAGGATGATGAGACTCGTGAAAGAGATGCTATTCTTGCTCCAGCTTCAATGAACTTGTAAGTAGATTTGAAAATGAGCGCCGACTTCCTCATGATCAAACTAGATTTACCCAATTCTCCATTCATCAACAGCGGGGAACTTCGCTGAGCTTCAATGTCTGATCCATTATCTTCATGATCCAGCTCCATCATCTTCGCCTTTGATCAGTACATTTTTCTTCTTCTTCTGTATTTATTATAAAATACTAGGAAAGATCACTATGATCTGACACTTAAAAGATTCAGATAGAATAAGATATGATGGTAAGGAACTGATTTTTTTGTATACATATTTATAGGGAAAGAAAA</genome_strand>
        <mrna_strand>GCTCCCCTTGACTCCTTCAAAATTGTGAAGTGATTCCAACTTCACATTCTCTTCACTAATTTGTAGGCATTGTTGATGAGTACTTAGATCATGAGGCTGAAGCTCAATCTCATTGTTTGATTGTACAGTATAAACATCAGCCACAGTTTCAACCATCTGGAATTCATCTCCACCACCTTCCGCGTCCTAATTAGACAGAGAGCATATATAATTAATATCATCAATATATAACTTTAAACTATATGCATATATATATGTTTTATATATACATACTCCATGTTTAAGATTGAAGCTGGGAAGAGGAGTATAAAAGGTTGTGGTGGAGGATGATGAGACTCGTGAAAGAGATGCTATTCTTGCTCCAGCTTCAATGAACTTGTAAGTAGATTTGAAAATGAGCGCCGACTTCCTCATGATCAAACTAGATTTACCCAATTCTCCATTCATCAACAGCGGGGAACTTCGCTGAGCTTCAATGTCTGATCCATTATCTTCATGATCCAGCTCCATCATCTTCGCCTTTGATCAGNACATTTTTCTTCTTCTTCTGTATTTATTATAAAATACTAGGAAAGATCACTATGATCTGACACTTAAAAGATTCAGATAGAATAAGATATGATGGTAAGGAACTGATTTTTTTGTATACATATTTATAGGGAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584766" ref_strand="+" ref_description="SGN-U584766 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|30693337|ref|NP_190628.2| (e_value=1e-88) transducin / WD-40 repeat protein family [Arabidopsis thaliana]; (*ATH) AT3G50590.1 (e_value=1e-90)  Symbol: None | transducin family protein / WD-40 repeat family protein, contains 3 WD-40 repeats (PF00400); some similarity to s-tomosyn isoform (GI:4689231)(Rattus norvegicus); contains non-consensus AT-AC splice sites at intron 18 | chr3:18782000-... ; ">
      <seq>gctcgcatcagattattcctctcttcaaccccttttctgtagattaattaatatcaaagactaaatttcatcatcaaagcttttcaggatctgatctgaaaattttgatccgttcattttcatgatctggatctgagacctcacttcatcgttgtgttcttagttgaaattggtctaggttagttaaattagggtggatcaatggagtgggcgactctacagcatttagatctccgccatgttggtcggagttcgaagtcgttacagcctcacgccgccgcatttcatcccactcaagcgcttctcgctgttgccgtgggaagccaaataattgaatttgatgcatataccggaagcaagattgcttccatagacattggttcccctgttgttcgaatggcttatagtccaacaagtggacattgtgtaattgctattcttgaggattgtacaatgcgttcgtgtgattttgatgcagagcaaacatgtgttttacattcacctgagaaaaggaccgaacgcatttcttctgatactgaagttcaccttgcattgactcctcttcaacctgttgtattttttggtttccatcgtaggatgagtgttacagttgttggaactgtggaaggtgggaaggcgccaacaaaaataaagactgacctgaagaaacctatcgttaatcttgcttgccatcctcgactaccagttctgtatgtagcttacgcggaangggttgattcgagcttataacatccatacatatgctgtacactacactttacaattnnntnatactatcangctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="137650" stop="141837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137949" g_stop="138282" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="138283" i_stop="138376" i_length="94">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138377" g_stop="138486" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="444" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138487" i_stop="140080" i_length="1594">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="140081" g_stop="140246" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="610" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="140247" i_stop="141260" i_length="1014">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="141261" g_stop="141361" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="711" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="141362" i_stop="141464" i_length="103">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="141465" g_stop="141537" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="785" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="141538" i_stop="141635" i_length="98">
            <donor d_prob="0.379" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="141636" g_stop="141656" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="806" r_length="21" r_score="0.762"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U584766" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137949" e_stop="138282"/>
          <exon e_start="138377" e_stop="138486"/>
          <exon e_start="140081" e_stop="140246"/>
          <exon e_start="141261" e_stop="141361"/>
          <exon e_start="141465" e_stop="141537"/>
          <exon e_start="141636" e_stop="141656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCATCAGATTATTCCTCTCTTCAACCCCTTTTCTGTAGATTAATTAATATCAAAGACTAAATTTCATCATCAAAGCTTTTCAGGATCTGATCTGAAAATTTTGATCCGTTCATTTTCATGATCTGGATCTGAGACCTCACTTCATCGTTGTGTTCTTAGTTGAAATTGGTCTAGGTTAGTTAAATTAGGGTGGATCAATGGAGTGGGCGACTCTACAGCATTTAGATCTCCGCCATGTTGGTCGGAGTTCGAAGTCGTTACAGCCTCACGCCGCCGCATTTCATCCCACTCAAGCGCTTCTCGCTGTTGCCGTGGGAAGCCAAATAATTGGTAAATCCTTCTCATTTTCAGCTTTGAATTTTAATATGCTTTATGTTCTGTTAATTAACTCTGTGATGATGCTGAGTATATTTTAAATGGGCAGAATTTGATGCATATACCGGAAGCAAGATTGCTTCCATAGACATTGGTTCCCCTGTTGTTCGAATGGCTTATAGTCCAACAAGTGGACATTGTGTAATTGCTATTCTTGAGGTTAGTTCATTTAATATCTTCAAATATTTCAATAGTTTTAGTTAAAACCTGCAAGTGATAACACTTGTTACATTCGAAACTAGTGGAGTTGCGATGAACTTAAGTGTGGTGGCATTGGCTCATGTACTAACTTTGAATCCCCAAAAATATTAACCGAACATTTTCATCTTTCCAAGATGGGAATAGTTTAATGGGTTTTCAGTTCTAACTTGTTGAGGAACCATGAGAAAATGCTTTAAATGGTGATACACTGGCAACCTTTTAGTGCTTAAGTTTTATCAGTAATTTGTTTGCCTAGGAAGGGTCATCATTAAATCCAACAACACAAAAGACTTCCATTTGCACTGAGCAATTGATTACCTTTAGTTTTCTTCGTTTGAGACGAGGGTTGGGTGCTGGCATATAGCATTCGAATGAAAATATCAGATATTATTCATTTAGCTCTTCTTTTCTTGAGCTTACAAAAAAAGCTCTTTTCTTTTTTTTGCATTGGCTCCGATAAGTTGTGAAAGTTTATTCTAAAGGATGTTTGTTATACATAGAAGGATATCTTATTGGCTACAGTTAAAATGGCAACTTGGAGAGGTGACAACTTTCAGACATCCCTGTTTTCCTTGCATCAACCAACCAACAGAAAACTGTATGTACTATAGATTCGTATGGCATAGTAAGAAACTACAAAAGACATGCTACTAGAAGAATCATAAGGAAAAAAATTTATTAGAGAAGGATAAGTGAACTGAGGCGTGATATAACAACTGTCTTCAAATATTTGCAATTTTAAACCAAAAAAAGAAAGAAGAAAAGACTGTCTTCACTCTTCAGCACATTGAATCTCTATGTTATTCAGTGTTTATCTCTATGTTTTTAAAGTATTTTGTGATAAGTTCCTTTTGTTATTTATTATATCCTGGAAGATCATGTCTTTGAATTTCAACTGTGTAATCTTCTGTTATTGTTCTTTAAAATCTTTTTTTGTTTCATTTAATCATATAATATAGTAACAACGGACCAACTTATTACCCTTTTGGCCATTGTCATAAGCAGACAGTGTTCTTCACATCGCTCATGATACTCTAGGTTCCTTCTCTCTTTGCAGTTAGATACCTTGAAATCAAGGATAAAGCTTCTCAGATTATTCGTAATAGACTTTTTTCCCCTTATAAAACAAACTTGCTAGAATTTTTTTCATAAGTACGATCATATGTAATTATTCTTTATTTTCTCTTCTTTTTGTTGTTTGTTTCTTTTGTATAAGACAACAAAGAAGGAAGCAAGGATGCATTTTTATTATCCTCTTTTCCCTTAGGAGTTCATATATTCCCATAAGATTTCTAAAACCCCTAGATAAAGCTAGTATGCATTTTTATTATCCTCTTTTGTCTGTGATATACATTTTTGCTAGTAAAGATTGATTGTTTCAGGGTGAATTTTAATTGTTTCTTACTGTAGAATTTAAAGCTCCAATGATGTCACTCGTTCTTCGTAGCTTAAGTGAGATATTTGAACTCGGATATTGATGTCATCAGTACTCGTTATGCTATTATCTTGCATTTAGGAAAATTGTACTCATTTTGCTTACTGCTTTTTGTAGGATTGTACAATGCGTTCGTGTGATTTTGATGCAGAGCAAACATGTGTTTTACATTCACCTGAGAAAAGGACCGAACGCATTTCTTCTGATACTGAAGTTCACCTTGCATTGACTCCTCTTCAACCTGTTGTATTTTTTGGTTTCCATCGTAGGATGAGTGTTACAGGTTGGAGCTCATGCCTGTACACACATCTATTTCATATTTAAGCAGTTTTTTTTTGTTGCATTGTTTGAGTTAAAAAGTAAATTCTAGCTGATGCTCCTAGTATATGTGTCCTTGGTTAGAAATTTACTCATTATATAAAAGCACCATTGCTATTAGTTTAATTATAGATATTTCACCATCTAAGTGATGGGTTATATGGACATGAGAGATGTAATCCAGCTATTGGGAGTTGCAAATGCAAACCAGAGTTGTGTGGTGTTGTTGTTTCTTGTATAATGTGGTTGTTGGATTGCAGTCTCGGCAATGTTAGTCCTGAGAGCTGCACTAGCTATCCTGTGCTTTTCTGCTTGTTGTTATGCTGATATGTATTTCAAAAGAGTCCTCTGTCATTCATCAATTATGGCCGAGTCTATACTTCTTTCTTGTCAATGCTACCACATTATCTTCATATTTCCTTAGGAGCGTTAATATTTTGTTTTATGTGGTTTAACCGAGTGCCTGCAACATTTACTACTTCTGCCTTCATGTCTCTCTGTTCTGGTTTTCTTGATGATGTATTTTGTCCTTCTGGATTTTGCTCTCATGCTTTGAAGCGTATTATCCCTGAAAGAGCAATACAACAGCCTCCTTTCCTTGCATATCATTCTTTTGTTGTATGCCCATAGCCCATTTAAGAAAAAAAGATCACTGGTAAACTTAGTCAGAACTTGGGAGTTTGTGAAGAGTCTTTTCGTTTGCAGAACTTTGGAGACTAGGGTTTAACCTCGGATTATTTCTTCCCATTTATCTATTGCTCGATGGAAAAAGTTACATGGTACTTGTGGTGGTGGAAGGTCAGGTAGCTGGTGGAATAGTCGAGGTGTGCTCAAGTTGGACAGGCAACACAATGTTAAAAAACAATGTTTTTGTCATTTGCTATGTTTCTACAGTCAAATGCTAGTTCCAGAGCAATTCTTTGTTCTTGAATAGCTATTTTATTGCAAGCGTTTCTGATCCATTTCTCTTCTTGTGAAGTTGTTGGAACTGTGGAAGGTGGGAAGGCGCCAACAAAAATAAAGACTGACCTGAAGAAACCTATCGTTAATCTTGCTTGCCATCCTCGACTACCAGTTCTGGTAACATGTTTAGTGCAATTAAAGCCTCCTATTTCATGATTGACCAACAAAGTTTGTGACTGCCAATTTGATCTGACCTTTTCGTACTCCCTTTTGATTTCAGTATGTAGCTTACGCGGAA-GGGTTGATTCGAGCTTATAACATCCATACATATGCTGTACACTACACTTTACAATGTGAGATTTGAACAAGTCTCTTAAGATATTCTCTTTTTTGTTGGATAGTTTGAACTTAGTGGAACTTTCACGAAAGCCTGTTTATTTGCCATATATAGTGGATAATACTATCAAGCTGG</genome_strand>
        <mrna_strand>GCTCGCATCAGATTATTCCTCTCTTCAACCCCTTTTCTGTAGATTAATTAATATCAAAGACTAAATTTCATCATCAAAGCTTTTCAGGATCTGATCTGAAAATTTTGATCCGTTCATTTTCATGATCTGGATCTGAGACCTCACTTCATCGTTGTGTTCTTAGTTGAAATTGGTCTAGGTTAGTTAAATTAGGGTGGATCAATGGAGTGGGCGACTCTACAGCATTTAGATCTCCGCCATGTTGGTCGGAGTTCGAAGTCGTTACAGCCTCACGCCGCCGCATTTCATCCCACTCAAGCGCTTCTCGCTGTTGCCGTGGGAAGCCAAATAATTG..............................................................................................AATTTGATGCATATACCGGAAGCAAGATTGCTTCCATAGACATTGGTTCCCCTGTTGTTCGAATGGCTTATAGTCCAACAAGTGGACATTGTGTAATTGCTATTCTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTACAATGCGTTCGTGTGATTTTGATGCAGAGCAAACATGTGTTTTACATTCACCTGAGAAAAGGACCGAACGCATTTCTTCTGATACTGAAGTTCACCTTGCATTGACTCCTCTTCAACCTGTTGTATTTTTTGGTTTCCATCGTAGGATGAGTGTTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGGAACTGTGGAAGGTGGGAAGGCGCCAACAAAAATAAAGACTGACCTGAAGAAACCTATCGTTAATCTTGCTTGCCATCCTCGACTACCAGTTCTG.......................................................................................................TATGTAGCTTACGCGGAANGGGTTGATTCGAGCTTATAACATCCATACATATGCTGTACACTACACTTTACAAT..................................................................................................TNNNTNATACTATCANGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600374" ref_strand="+" ref_description="SGN-U600374 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157327843|emb|CAO16544.1| (e_value=2e-75) unnamed; (*ATH) AT3G50590.1 (e_value=1e-43)  Symbol: None | transducin family protein / WD-40 repeat family protein, contains 3 WD-40 repeats (PF00400); some similarity to s-tomosyn isoform (GI:4689231)(Rattus norvegicus); contains non-consensus AT-AC splice sites at intron 18 | chr3:18782000-... ; ">
      <seq>cctgccgcaancgaatccatggacatcccgagaattctatctcagcaaggaggacaaccagcttatccacttcctcgaatcagggctttagaagttcacccaaaattaaatctatctgcattgctttttatgaatttgactggtgctgacaatagaaaaaatagagctgcttttactagggatggaaggaaacaattatttgcagttctgcaaggagcaaggggatcttcagcctctgtcttgaaggaaaagctctcagcccttggttcatccggaatattagctgatcatcaacttaaagcgcagctgcaagagcattatttgaaaggacaaagtcagctcacaatttcggatatagcgagaaaggcttttctttatagccattttatggaaggtcatgcaaaaactgttccaatttcccggttacctctcatcacaattctggataccaaacattatttgagagatgtcccagtttgtcagccatttcatctggatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0115F06-BDml6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0115F06.1" temp_strand="+" temp_description="C02HBa0115F06.1  AC232771.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0115F06 sequenced_by:kribb upload_account_name:korea">
        <position start="143258" stop="149404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143563" g_stop="143687" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="132" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143688" i_stop="143760" i_length="73">
            <donor d_prob="0.043" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143761" g_stop="143860" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="232" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143861" i_stop="145884" i_length="2024">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145885" g_stop="145981" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="329" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145982" i_stop="147070" i_length="1089">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="147071" g_stop="147122" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="381" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="147123" i_stop="149090" i_length="1968">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="149091" g_stop="149192" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="483" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="149193" i_stop="149273" i_length="81">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="149274" g_stop="149292" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="502" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0115F06.1" gen_strand="+" ref_id="SGN-U600374" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0115F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143563" e_stop="143687"/>
          <exon e_start="143761" e_stop="143860"/>
          <exon e_start="145885" e_stop="145981"/>
          <exon e_start="147071" e_stop="147122"/>
          <exon e_start="149091" e_stop="149192"/>
          <exon e_start="149274" e_stop="149292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGAATCCATTGACATCCCGAGAATTCTATCTCAGCAAGGAGGAGAAGCAGTTTATCCACTTCCTCGAATCAGGGCTTTAGAAGTTCACCCAAAATTAAATCTATCTGCATTGCTTTTTATGGTGAGCATTTCGATTTATGTCACATACCTGCGACTTGTGTTGACACTCAGGACATTTCTGTGTTTGTTTACAGAATTTGACTGGTGCTGACAATAGAAAAAATAGAGCTGCTTTTACTAGGGATGGAAGGAAACAATTATTTGCAGTTTTGCAAGGTGCAAGGGGATCTTCAGGTATTTCTAAACTAAGAATTTTGCTGTGTGCTTCTTCAATATCATATCTTCTTGTTTTTATCAGGTTAAATGTATTTCATTTATTAACATGGCCACAATATTGGCTGTATACAATGGGTATTACCTAAAAGAAAAGAATTATAAAAAAGACGTGATTCTCTACAAAGTCCACCTGTTATTCTATAGAACTAGGAACTTTATGGGTGTACCAAAAGAAAATAAGAGACTGAGGGATACTACTGTACAGAGTAAAACTCAACTCTACCCCCTCAAAGCTCTTCTATTTCTCTATCTCCAAACTACCCACTCAACGTTAGAGGAATCACATTACATGCCCTACTTCTCGTCCTCCAACAAAACATCAAGTCTTCCACAATATTTGGCATTGCCCAAAAGTTCCAAACCACTAAAGCATGTCCACCATAACCTCATGGTAAAAACACAATGTAGGAGACAATGATCCACGTATATGTAACACCAACTGACATTGACAATCTTTTGCTTTCTAAGATTTTGTGCCGTCAAGATCACCCCTCTAGCAGCCAGATGAGAGAAAAAGCACACCTTCCTCGGCACATGTGGTGTCCATATTGCATCATACAAACCCTAACCAAAAGCTTCTCATAGAGAAAACTCCATTATTCCCCAAACCCCACCGCAAAGCATCAGAGTTATCAAATGAAATGACTTGCCTGTGTAAAATGGCCGACAACCTGTGAAGCTCAGTCACCTCCAAATCGTGGAAATCCCTTCTAAAGTTCAAAAAGTCGCTAGTGTTCTAATTTGTTGGATCGTCAAGTCTTCTTGTCATGATATTCGGAACAAACTCCGAAATTCAATTTTCAGTAAGTTATCCCCACACAACGTATGTTCCCACAAATTGATTCTCTTTCCATTTCCTACCTTGAATGAGATATTTTCATTAAAATCTTCCCATCCCTTCAGTATGTTTCTTCACAGTCTGCATCCAAAAGGCATAGTGACATCTCTAGTTCTCGATCCCTCTGTTATTTCCCTATATTTATCAGCTATTTCACCTCTCCAAAGATTTCAATACCATATCTTATGTTGGAGCTATCATAGATTTCATTTTATCATGCAAGTCTCAAGTTCTATTAGTCCTTCCTTTTAAACTGAGAGCATTTATATAATCAATGAAGGTTTATTCAGATTTGCTTATGAAGTCAGGTCTTATATTCTTCAAGTATTGATTGTCTCTTCATTTGATCTCTCTGGGACCTGGGCTTCATTTTTTATATGATTTAACAGAGTTTCCTAATCATGAAAAATACAGTGTCTGAAATGCTGTTTATGTGCCTGTGCTGTTATCGCTGCTATGTGCTTGATTTTGCAAAGAAAATTATTTTTGGAATTGGCTACAATCTCTTGATTCGATTAGTTACTCTAGTTTTCATCCCATCAGCTTATCTAACTTCTTTTATGCGGTTGTACTGTTGTTATTGCTATGTGTGCATTATATTGGAAAATAATAGAATTTGTAACGATTTCTCAGTGCATGTAATTGATTCTGTTTTAAGTGCTCAACAAATCTTGGGTTGTTGATGGGGGAAGGAGTGTGCTGAGGCTTACATGCACCTGTTTTTCCTTATTGTTTTTACTTTTATCCTCTCTCTAGTCTTCAATTGGATACTGCAGAGGCATTGCTAATTGCTGTTATTTTGTTTTCCTTTAGAATATGCAATCAGTATGTTCCTTTCTGAGTTTGGTGAACTTCTAGTGCAATCATACAAGGTTCTTATTAGTGTAGATGATGGTGTTTTTTTTAGAGGACTATACTTTGTGTAATCTCTCTACTTTTGTATAGCATGTGTCCAAGGGGGAGCCCGAGAGTATCAATACTTCATCAAAAATAAAATAAAGTAATATGTAATCCGAATATGGTGTTTTGAAATAAATGTACTTTGAAAGTGGTTTTAGGTGATATTGTGATCACATTGATATAACTGCCGTATTAAGTGATCTGTATCTTCACCTTGTTGTTCTAACTTCATGATCCTGAACAGCCTCTGTCTTGAAGGAAAAGCTCTCAGCCCTTGGTTCATCCGGAATATTAGCTGATCATCAACTTAAAGCGCAGCTGCAAGAGCATTATTTGAAAGGGTGAGTTAATTTAGCCTTAGGCCCTTAGCATTATTCACTTTCTATCAGAACTAGTAACATTCAGGATACCCTGGTTGTGACCTGTAAGTATATCAAAAAATGTTGGTACTATCTAACTGTTCTTATGGACATTCATATTTACACAGTTTTTCAGCTAAGGAGGATGGGTTGGCAATTTTTTGTTCAAAAGCGACAAGGGATGACGTAACTATTTTTTCCCTTGAGAATGATAACTTGAGTATTAAAGAAAAAGGCACTAGGATAGTGCTAAAACTATAAATACAGAGAGAAAGGGCAGCTGATCCAACTATGAAACCCTAACAGTTACAGAGCAGCTATCAAACCTACTAAGGATACTGCTTCCACTACAAAAATGAAATCCTAACAGTTACAGGCACTAGGAGATTGCTTTCTTCTTTATGCCAAAAATGAAGTGCTTTCTCATCACTAGGTAATGCTGAAAGGGTTAAATTGCATTCCTCATCACTAAACTAAGCTTAAGTGACCGTTAGATAAATACAATTGGAGATACACATGAGTCAATAGAAAGTAGAAAATATATCTTGACTTCCAAAAAGATAACCACACCACAGAAGTGGTGATAAGAGTGGTTTTGTTGTCTTCTTGGTGGTGTAAGGCTATAGACATCTTTCATCGTATTGCTTGACTGATCTTTGGCGAGGTTGAAGAACTTGGTATTCTTAATTTATCTCTTGTAGCCTGAGGACACCCGATCCTCACCTCTGTAGTCTGAGTGCATATTATACATTTAACATATGTCCATTTATTAATTATATATATTGCAAATCAGTTTATCAGCCATCTACTAGAAACCTAGTTATTAATCATTATTTGTAGGGTGTAGCCTATCTTTTTGTCATATTAACCATTTTGGAAACTCTATTACATTACGTGGAATACTTGACCTTTATTAGTAAATAGCAATTGTACTAACTTCTCTTTGAAAACTTTTGTTGGTTCGCTAATTTTTCTCGTTGTCTACTTGTTTAATTCTCCGATTTTACTACTTATCTATTGAGTTGCCAGAAGGTTTTTACAACTAATGTTTGGTTAATTTTCTTGTGTCAGACAAAGTCAGCTCACAATTTCGGATATAGCGAGAAAGGCTTTTCTTTATAGCGTAAGCCATTTCTCTTTGTTTCACAATTTTTTCTTTGGAAAGTATGGCCTATCTTATATGGATCTTTCCTAAAATTTGAGGGGGCTACAAAAATCCTAGTTGATTTCTTTCCATCCTCCTAAACTTCAGTTGACAAAGTTACCCTATGTATTGGTGGGACGTAGCATGTACCTTGTGGAATAACAAAGGTGCATTCAAGCTGACACACACACCATAATCATCAAAGAAAAGATTGAGGAGATTAGTAGATTGTTTGAAAAATAATACTTGCCTTTTCTATGATAGTAAATAATGGAATCATTTTCAGTTAAACCAAACTTTCTTCATAATTTGTGAGGAGTTGCATTGCTAGCTAATAGTGGGTTGGAGATATGCAGGACAGCGGTGGCAAGTAATTAGAAGGGCATTATTGATGTGCATTTGGGGATGGTAAACTATTATAACAGGAAGTATTTGTAATGACATATTAAAGTAAAAGGGAGTTCCTTCATATTTATCCATTGGAGTTGCTAAGAAAATGATTGTTAGATGTAACTCTACTCCAAAAGTTTAGCTCATCTTATTATTGGCATCTGGAGTGTTGGACTGTAGAATTTGGGAGTTCAACATTGGGTAAATCAAGGAAAAGATGAGTTTGACTATGATGCCATGTTAAGAAAATGGAAATGGACCTTGAGTATAATTCAACACAAAAAATTAGCTCATTAGGTGATATGATTGTTCAACATCGTGTAGAGAGTCGATGTGGAAATTCTAATAGGAGGGAAGGTACACTTAATTTTGTTAAGATTGAAGTATTGCAAATTTCACCATATCTTTTAGTTTTTTTATTTATTGAATCTTAGTGAAAAGTAGAAAGTTATAAGAATGACCTCTGAGCCTTTCAACACTTCTTCATGAGGTTTCTAAGAAACAAATGGAGTTTTATTGAATCGTGTATACTATATACCTTCTCATTTAAAAGTTTTTAAAACGAGACATTACTTTATGTAATTATGTCTTTAAAATAACTCTTCTGATACTGTTTATCTTTTTTCTTGAGCCAATCATGTGAGAATTTTATGACGTGTGATAGTGATACTTACAAGATGTGCCAGCTCTAGTACCATATTGAATCTGTCTCCTGATTTAAAAGTTTAAGCATGAGAGATGTTACACGTTTACATTTTAATTATGTTTTTAACCAACTATCAACCAGGGAAATAAATTGTCCTTTTTTATAAATAATAAGTGAATGAAGTGTTAGTAGAAATTTGTATACCATGTAAATTATGATAATTTTTTGCATCTTGTTAGCTCCCTGATCCTAGAGTAGACTGTTTATACTATGGAGCTAACTCAGTTTTAATGTAACATCATTTGTAATTTTGCATCTACTTAATGCCATCAATTATACCATTTATTTCACTCACATGAAAAAACTTTAGAACTAGATTTGACTGGTCGTTCATGCAAGCTATATTATTTATACGTAGAGTGTATAGGTCAGTCTTATCATATCATCAACTCAATAATTGACCTTCATCGTGTTGCTGAATCTAATTGTTGCATTACAGATGAAATGATTGTGCGCTGTTTAGGACATTATTTTTAGATGTGAAAGCACAAAAAATCTACCAAAAAAGCTAAAAGGTCTATGGGGCTTGAAGCAAAAAAGTAGAAATGAAGTGCATAGTTTACAAAATTGAAAAAAAATCCAAATATTCAATCAGTTCTATCATAGACGAATTGCAATAAAATAACTAATTTTAGCATGCAATATGCAAATAATTCCGACATTACTTGAAAGCCTCAAAGTTGAATTTGAAGAACCAGTTACGTTTCACTGGGGTCACTTTGGTTTTCATTGTTCAAAGCGTACATTCCTCTGAAGAACATCCTCTAAAGTCAAATTAACACTAACTTGCCTTTTGAGGCAAGAAGTCAATATTTATAAGAAAAAGTCACCTTGTGAACTTCTTTTGGCAGCATTTTATGGAAGGTCATGCAAAAACTGTTCCAATTTCCCGGTTACCTCTCATCACAATTCTGGATACCAAACATTATTTGAGAGATGTCCCAGTTTGTCAGGTAATTATTATCAACTGTTTAAGTTTCTGCCCTCTTCACATTGTTTTGCTTGACATATCTCTAATTAGCTATCTTGTGCAGCCATTTCATCTGGATCTAA</genome_strand>
        <mrna_strand>CAANCGAATCCATGGACATCCCGAGAATTCTATCTCAGCAAGGAGGACAACCAGCTTATCCACTTCCTCGAATCAGGGCTTTAGAAGTTCACCCAAAATTAAATCTATCTGCATTGCTTTTTATG.........................................................................AATTTGACTGGTGCTGACAATAGAAAAAATAGAGCTGCTTTTACTAGGGATGGAAGGAAACAATTATTTGCAGTTCTGCAAGGAGCAAGGGGATCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTCTTGAAGGAAAAGCTCTCAGCCCTTGGTTCATCCGGAATATTAGCTGATCATCAACTTAAAGCGCAGCTGCAAGAGCATTATTTGAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGTCAGCTCACAATTTCGGATATAGCGAGAAAGGCTTTTCTTTATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTATGGAAGGTCATGCAAAAACTGTTCCAATTTCCCGGTTACCTCTCATCACAATTCTGGATACCAAACATTATTTGAGAGATGTCCCAGTTTGTCAG.................................................................................CCATTTCATCTGGATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1206" PGL_stop="1603"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1206" e_stop="1603"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="1206" e_stop="1603" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1206" stop="1603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAATGGTACACAATCTGGTTCTCCTGAAGGGCCACTTCATTTTACTGGTTCAGGTTCAGCCAAAGGGGTGTCTGTGAATGAAGAAGAGGATAATAAATCGGAAAGCTATAATTGGAATGGACAGCTTCACAAGAGCATTGAAGGGTCAACTATAAGATCAAGTAGCCATTAATTTTGCAGCTACAGAAATAGGACAGAAACAAAACATAACAAATAACTTCACAGGAAATAGGGAATCTGCTGATATTAACATATGTTTGTTTGTTGATTTACAATACATTGTGAGTAGGACTAATGATTTGGATATATAGTCTGATACTAATACAAGCTGGTAGGGACCAGTGAACCTACAGAGGGAATATCAATTTTACAAACTAGTATATTGAATATTTATCT</gDNA_template>
            <first_frame> N  N  G  T  Q  S  G  S  P  E  G  P  L  H  F  T  G  S  G  S  A  K  G  V  S  V  N  E  E  E  D  N  K  S  E  S  Y  N  W  N  G  Q  L  H  K  S  I  E  G  S  T  I  R  S  S  S  H  *  F  C  S  Y  R  N  R  T  E  T  K  H  N  K  *  L  H  R  K  *  G  I  C  *  Y  *  H  M  F  V  C  *  F  T  I  H  C  E  *  D  *  *  F  G  Y  I  V  *  Y  *  Y  K  L  V  G  T  S  E  P  T  E  G  I  S  I  L  Q  T  S  I  L  N  I  Y   </first_frame>
            <second_frame>  I  M  V  H  N  L  V  L  L  K  G  H  F  I  L  L  V  Q  V  Q  P  K  G  C  L  *  M  K  K  R  I  I  N  R  K  A  I  I  G  M  D  S  F  T  R  A  L  K  G  Q  L  *  D  Q  V  A  I  N  F  A  A  T  E  I  G  Q  K  Q  N  I  T  N  N  F  T  G  N  R  E  S  A  D  I  N  I  C  L  F  V  D  L  Q  Y  I  V  S  R  T  N  D  L  D  I  *  S  D  T  N  T  S  W  *  G  P  V  N  L  Q  R  E  Y  Q  F  Y  K  L  V  Y  *  I  F  I  </second_frame>
            <third_frame>   *  W  Y  T  I  W  F  S  *  R  A  T  S  F  Y  W  F  R  F  S  Q  R  G  V  C  E  *  R  R  G  *  *  I  G  K  L  *  L  E  W  T  A  S  Q  E  H  *  R  V  N  Y  K  I  K  *  P  L  I  L  Q  L  Q  K  *  D  R  N  K  T  *  Q  I  T  S  Q  E  I  G  N  L  L  I  L  T  Y  V  C  L  L  I  Y  N  T  L  *  V  G  L  M  I  W  I  Y  S  L  I  L  I  Q  A  G  R  D  Q  *  T  Y  R  G  N  I  N  F  T  N  *  Y  I  E  Y  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17274" PGL_stop="20692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17274" e_stop="17728"/>
            <exon e_start="18003" e_stop="18132"/>
            <exon e_start="20243" e_stop="20692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.799" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="17274" e_stop="17728" e_length="455"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.799">
            <gDNA_intron_boundary i_start="17729" i_stop="18002" i_length="274"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18003" e_stop="18132" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="18133" i_stop="20242" i_length="2110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20243" e_stop="20692" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17274" stop="17728"/>
              <exon start="18003" stop="18132"/>
              <exon start="20243" stop="20692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCTAAACCCGAATTTTCCTGAGGGAGTTTACCCATTTCTCCAACACTCGACGCTTTCACGGGAATGTCGAAATGGTGGCGTGCGGTGGCAACCACCGCCGGAGGTCTGAGGTCGACGGAGGTAACTAGCAGGAGAACGTATTTTACAATTCAAGCGATCCCTAGGGAGGTCAGCGGAAGAAGAGTTTCCAGTAGGGACCGAGCCCAAGGTCGTATTCCGGCCGTTGTTTTCTCACAGAACTACGTCCAGTCAAAACCTGACGATCCAACTTCCATTGTCGCCGCAAGTTCTGTTTCTAGAAAGTTCCTCCTTACAACTGAAAGGAAGCAGATTAAAACGATCATTGATTCGGTTGATCTCCCTTTCTTTTGTTCGACAACCTTCCCTCTTCAGATTCGAGCTGGTTCGGGCTCGTCAACTTTACTGGAATCTGGAAAAGTACTTCCCATTAAG : ATTCATAAGGATGAAGAAACTGGTAAGATATTGAATTTGGTCTTTGTATGGGCTGAAGATGGAACAAAATTAAGGGTCGACGTGCCTGTTGTGTTCAAAGGGGAGCACGAGTGCCCTGGTCTCAAGAAAG : GTGGTTATCTAAACAAGATTAGACCTTCCCTAAAGTTGTTGTGCCCAGCGGAGAATATACCTCAAAAAATTGAGGTGGACATAAGTCAGCTAGATGTTGAAGACAAAGTGTCCCTGCATGATATCGATGTTCATCCAACTTGGAAGCTCTTAAGCAAGAATGAAACCATCCCTGTTTGTAAGGTTAAGGCAACGCCAGTTGATAGCTAATTTTGTCGATGCTATTTTTCAACTGGCAGATGCATCTGAAGTCTCCATTAGTTCAACATTGTCTGTTCTAATTTTGACCTGGTTTCGTAGTGGTGTATATGGACACGGTCAAAAGACATTAGAAACTTTTGCTATACTGTAGTAGTAAAATTGCTATTTTGGGAATTGTTCTAGAATAATAAACTTGTGCATTAATGAGTAAATTGGAAATGCAACTGCAGTCTTTTTAAGTTTTTTAGTA</gDNA_template>
            <first_frame> T  L  N  P  N  F  P  E  G  V  Y  P  F  L  Q  H  S  T  L  S  R  E  C  R  N  G  G  V  R  W  Q  P  P  P  E  V  *  G  R  R  R  *  L  A  G  E  R  I  L  Q  F  K  R  S  L  G  R  S  A  E  E  E  F  P  V  G  T  E  P  K  V  V  F  R  P  L  F  S  H  R  T  T  S  S  Q  N  L  T  I  Q  L  P  L  S  P  Q  V  L  F  L  E  S  S  S  L  Q  L  K  G  S  R  L  K  R  S  L  I  R  L  I  S  L  S  F  V  R  Q  P  S  L  F  R  F  E  L  V  R  A  R  Q  L  Y  W  N  L  E  K  Y  F  P  L  R :   F  I  R  M  K  K  L  V  R  Y  *  I  W  S  L  Y  G  L  K  M  E  Q  N  *  G  S  T  C  L  L  C  S  K  G  S  T  S  A  L  V  S  R  K  :  V  V  I  *  T  R  L  D  L  P  *  S  C  C  A  Q  R  R  I  Y  L  K  K  L  R  W  T  *  V  S  *  M  L  K  T  K  C  P  C  M  I  S  M  F  I  Q  L  G  S  S  *  A  R  M  K  P  S  L  F  V  R  L  R  Q  R  Q  L  I  A  N  F  V  D  A  I  F  Q  L  A  D  A  S  E  V  S  I  S  S  T  L  S  V  L  I  L  T  W  F  R  S  G  V  Y  G  H  G  Q  K  T  L  E  T  F  A  I  L  *  *  *  N  C  Y  F  G  N  C  S  R  I  I  N  L  C  I  N  E  *  I  G  N  A  T  A  V  F  L  S  F  L  V </first_frame>
            <second_frame>  P  *  T  R  I  F  L  R  E  F  T  H  F  S  N  T  R  R  F  H  G  N  V  E  M  V  A  C  G  G  N  H  R  R  R  S  E  V  D  G  G  N  *  Q  E  N  V  F  Y  N  S  S  D  P  *  G  G  Q  R  K  K  S  F  Q  *  G  P  S  P  R  S  Y  S  G  R  C  F  L  T  E  L  R  P  V  K  T  *  R  S  N  F  H  C  R  R  K  F  C  F  *  K  V  P  P  Y  N  *  K  E  A  D  *  N  D  H  *  F  G  *  S  P  F  L  L  F  D  N  L  P  S  S  D  S  S  W  F  G  L  V  N  F  T  G  I  W  K  S  T  S  H  *   : D  S  *  G  *  R  N  W  *  D  I  E  F  G  L  C  M  G  *  R  W  N  K  I  K  G  R  R  A  C  C  V  Q  R  G  A  R  V  P  W  S  Q  E  R :   W  L  S  K  Q  D  *  T  F  P  K  V  V  V  P  S  G  E  Y  T  S  K  N  *  G  G  H  K  S  A  R  C  *  R  Q  S  V  P  A  *  Y  R  C  S  S  N  L  E  A  L  K  Q  E  *  N  H  P  C  L  *  G  *  G  N  A  S  *  *  L  I  L  S  M  L  F  F  N  W  Q  M  H  L  K  S  P  L  V  Q  H  C  L  F  *  F  *  P  G  F  V  V  V  Y  M  D  T  V  K  R  H  *  K  L  L  L  Y  C  S  S  K  I  A  I  L  G  I  V  L  E  *  *  T  C  A  L  M  S  K  L  E  M  Q  L  Q  S  F  *  V  F  *   </second_frame>
            <third_frame>   P  K  P  E  F  S  *  G  S  L  P  I  S  P  T  L  D  A  F  T  G  M  S  K  W  W  R  A  V  A  T  T  A  G  G  L  R  S  T  E  V  T  S  R  R  T  Y  F  T  I  Q  A  I  P  R  E  V  S  G  R  R  V  S  S  R  D  R  A  Q  G  R  I  P  A  V  V  F  S  Q  N  Y  V  Q  S  K  P  D  D  P  T  S  I  V  A  A  S  S  V  S  R  K  F  L  L  T  T  E  R  K  Q  I  K  T  I  I  D  S  V  D  L  P  F  F  C  S  T  T  F  P  L  Q  I  R  A  G  S  G  S  S  T  L  L  E  S  G  K  V  L  P  I  K  :  I  H  K  D  E  E  T  G  K  I  L  N  L  V  F  V  W  A  E  D  G  T  K  L  R  V  D  V  P  V  V  F  K  G  E  H  E  C  P  G  L  K  K   : G  G  Y  L  N  K  I  R  P  S  L  K  L  L  C  P  A  E  N  I  P  Q  K  I  E  V  D  I  S  Q  L  D  V  E  D  K  V  S  L  H  D  I  D  V  H  P  T  W  K  L  L  S  K  N  E  T  I  P  V  C  K  V  K  A  T  P  V  D  S  *  F  C  R  C  Y  F  S  T  G  R  C  I  *  S  L  H  *  F  N  I  V  C  S  N  F  D  L  V  S  *  W  C  I  W  T  R  S  K  D  I  R  N  F  C  Y  T  V  V  V  K  L  L  F  W  E  L  F  *  N  N  K  L  V  H  *  *  V  N  W  K  C  N  C  S  L  F  K  F  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17297" stop="17728"/>
                    <exon start="18003" stop="18132"/>
                    <exon start="20243" stop="20451"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLPISPTLDAFTGMSKWWRAVATTAGGLRSTEVTSRRTYFTIQAIPREVSGRRVSSRDRAQGRIPAVVFSQNYVQSKPDDPTSIVAASSVSRKFLLTTERKQIKTIIDSVDLPFFCSTTFPLQIRAGSGSSTLLESGKVLPIKIHKDEETGKILNLVFVWAEDGTKLRVDVPVVFKGEHECPGLKKGGYLNKIRPSLKLLCPAENIPQKIEVDISQLDVEDKVSLHDIDVHPTWKLLSKNETIPVCKVKATPVDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25464" PGL_stop="27936"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25464" e_stop="26205"/>
            <exon e_start="26486" e_stop="27103"/>
            <exon e_start="27202" e_stop="27289"/>
            <exon e_start="27685" e_stop="27747"/>
            <exon e_start="27839" e_stop="27936"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="25464" e_stop="26205" e_length="742"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26206" i_stop="26485" i_length="280"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26486" e_stop="27103" e_length="618"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.863">
            <gDNA_intron_boundary i_start="27104" i_stop="27201" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27202" e_stop="27289" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="27290" i_stop="27684" i_length="395"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27685" e_stop="27747" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27748" i_stop="27838" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27839" e_stop="27936" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25464" stop="26205"/>
              <exon start="26486" stop="27103"/>
              <exon start="27202" stop="27289"/>
              <exon start="27685" stop="27747"/>
              <exon start="27839" stop="27936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGGAGAAGAAGAAGGAAAGGGAGGATTTTGACCTCACGATGAAGATATTTTTCTTGTCTTTTTCCTATCATTTTTCCTTATAACTCTCCATTCCTTCCTTCTTGTACAACTTTTTTCCGGGAACCCGCCGACGCCGACCAACCCGACGCCGGCGAGTTTTCCCACCTTTTTTACCCTTCTCCGAGGTTCCTCTGTTTTCAACTATGCTCCTGAACGCAGGTTTTGTACAGTGTTATTATTATTATCTTTTTAAGGCCTCAAACGTACCATGCATTTTGTAACCAAAACTACCACAGGCAATGCGTTGGTGGCAGAGCGCCTTTTCATCTTCCTCCGGTTCGTCTTCCTCTTCCTCGTCATGCTCCTCTTCCAAAGTATACTCTGACGATAGCCTCCTTGCCTCCGGTGGAGGCATTCGTTACACCATCAAATCCGCTTTTTTCTTCGCCCGTAAGCGCCGACACGCTCGCGCGAAAAAACTCCAAAATCTTACGGAACATGACGGTGATGACTGGCGTTCTCACTGTTCCAATGATAATTTGCCGTCCAAATATTCCTCCGATCGTCCGCCTCCGCAACCTTTGCCTTTGCCGGAGCTGCATCTTGTGCTTCGCCACGAATCCGATGCGGTTTCGAATGAACCCAATGTACCACTGCCATCGCCCTCAGACGCGCATTTGCATCATAGAACTGGAGAGGATTCTTCCACCCGTAAGGATGGTGTAGCATCCCATGGAAG : ATTATCAAGCCAAGATGGTCGAAAGAAGAAAAAAGAGCACTTGGGAAGTCGCTTGTCTAGGAAGACACCTCAAAAGCTTCATGTTGCTGATAGAGCTTCTGATATCAGGATCAGCGCACCCATTAGTGCTCCTACAACTCCTTATGCAAGTCCTGGAGTCAGTCCACTAAAAGCTGGGGATCTTTTAAATCATAATTACATGGCATTCCCTGGTGCTTTTCAAGTTTGTTCTGCCCCAGAGATGCCTCCATCGGACACACTTCAGTATCCAGGTTTCTCTTACCATGTTCTCCCGGAGAAAAATGCTTTTAGTGTTGATAATTCTCCTCATCACAGTCCAAGAGTAAGCCCACAGAGGAGTGGAAAGATCGCAAGTGGACCTGCATCACCCTTGCATCAATTATTACCAAATGAGAACTCAACAGCACGCCGTGAGAGTAGTGCTCAGGGAAATGTCCATCCACTACCACTTCCTCCTTTGGGTGCCACTCCGTCACACCCTACTTCCATTCCACCAGTTCCCTCTAATGCAGAGTTGACACCAATCAAAGGCCAATGGCAAAAGGGGAAACTTATTGGGCGTGGGACTTTTGGTAGTGTATACGTCGCATCCAACAG : AGAAACTGGAGCTTTATGTGCGATGAAAGAAGTTGAATTATTACCAGATGATCCGAAATCTGCAGAGAGCATAAGGCAATTAGAGCAG : GAAATTAATGTTCTCAGTCATCTCAAGCACCCAAATATTGTCCAGTATTACGGCAGCGAAGTA : GTTGGTGACCGATTTTACATTTATCTGGAATATGTTCATCCTGGTTCTATCAATAAATTCATCCGTGATCATTGTGAAACAATTACAGAATCCATAGT</gDNA_template>
            <first_frame> K  W  R  R  R  R  K  G  R  I  L  T  S  R  *  R  Y  F  S  C  L  F  P  I  I  F  P  Y  N  S  P  F  L  P  S  C  T  T  F  F  R  E  P  A  D  A  D  Q  P  D  A  G  E  F  S  H  L  F  Y  P  S  P  R  F  L  C  F  Q  L  C  S  *  T  Q  V  L  Y  S  V  I  I  I  I  F  L  R  P  Q  T  Y  H  A  F  C  N  Q  N  Y  H  R  Q  C  V  G  G  R  A  P  F  H  L  P  P  V  R  L  P  L  P  R  H  A  P  L  P  K  Y  T  L  T  I  A  S  L  P  P  V  E  A  F  V  T  P  S  N  P  L  F  S  S  P  V  S  A  D  T  L  A  R  K  N  S  K  I  L  R  N  M  T  V  M  T  G  V  L  T  V  P  M  I  I  C  R  P  N  I  P  P  I  V  R  L  R  N  L  C  L  C  R  S  C  I  L  C  F  A  T  N  P  M  R  F  R  M  N  P  M  Y  H  C  H  R  P  Q  T  R  I  C  I  I  E  L  E  R  I  L  P  P  V  R  M  V  *  H  P  M  E   : D  Y  Q  A  K  M  V  E  R  R  K  K  S  T  W  E  V  A  C  L  G  R  H  L  K  S  F  M  L  L  I  E  L  L  I  S  G  S  A  H  P  L  V  L  L  Q  L  L  M  Q  V  L  E  S  V  H  *  K  L  G  I  F  *  I  I  I  T  W  H  S  L  V  L  F  K  F  V  L  P  Q  R  C  L  H  R  T  H  F  S  I  Q  V  S  L  T  M  F  S  R  R  K  M  L  L  V  L  I  I  L  L  I  T  V  Q  E  *  A  H  R  G  V  E  R  S  Q  V  D  L  H  H  P  C  I  N  Y  Y  Q  M  R  T  Q  Q  H  A  V  R  V  V  L  R  E  M  S  I  H  Y  H  F  L  L  W  V  P  L  R  H  T  L  L  P  F  H  Q  F  P  L  M  Q  S  *  H  Q  S  K  A  N  G  K  R  G  N  L  L  G  V  G  L  L  V  V  Y  T  S  H  P  T   : E  K  L  E  L  Y  V  R  *  K  K  L  N  Y  Y  Q  M  I  R  N  L  Q  R  A  *  G  N  *  S  R :   K  L  M  F  S  V  I  S  S  T  Q  I  L  S  S  I  T  A  A  K  * :   L  V  T  D  F  T  F  I  W  N  M  F  I  L  V  L  S  I  N  S  S  V  I  I  V  K  Q  L  Q  N  P  *  </first_frame>
            <second_frame>  N  G  E  E  E  G  K  G  G  F  *  P  H  D  E  D  I  F  L  V  F  F  L  S  F  F  L  I  T  L  H  S  F  L  L  V  Q  L  F  S  G  N  P  P  T  P  T  N  P  T  P  A  S  F  P  T  F  F  T  L  L  R  G  S  S  V  F  N  Y  A  P  E  R  R  F  C  T  V  L  L  L  L  S  F  *  G  L  K  R  T  M  H  F  V  T  K  T  T  T  G  N  A  L  V  A  E  R  L  F  I  F  L  R  F  V  F  L  F  L  V  M  L  L  F  Q  S  I  L  *  R  *  P  P  C  L  R  W  R  H  S  L  H  H  Q  I  R  F  F  L  R  P  *  A  P  T  R  S  R  E  K  T  P  K  S  Y  G  T  *  R  *  *  L  A  F  S  L  F  Q  *  *  F  A  V  Q  I  F  L  R  S  S  A  S  A  T  F  A  F  A  G  A  A  S  C  A  S  P  R  I  R  C  G  F  E  *  T  Q  C  T  T  A  I  A  L  R  R  A  F  A  S  *  N  W  R  G  F  F  H  P  *  G  W  C  S  I  P  W  K  :  I  I  K  P  R  W  S  K  E  E  K  R  A  L  G  K  S  L  V  *  E  D  T  S  K  A  S  C  C  *  *  S  F  *  Y  Q  D  Q  R  T  H  *  C  S  Y  N  S  L  C  K  S  W  S  Q  S  T  K  S  W  G  S  F  K  S  *  L  H  G  I  P  W  C  F  S  S  L  F  C  P  R  D  A  S  I  G  H  T  S  V  S  R  F  L  L  P  C  S  P  G  E  K  C  F  *  C  *  *  F  S  S  S  Q  S  K  S  K  P  T  E  E  W  K  D  R  K  W  T  C  I  T  L  A  S  I  I  T  K  *  E  L  N  S  T  P  *  E  *  C  S  G  K  C  P  S  T  T  T  S  S  F  G  C  H  S  V  T  P  Y  F  H  S  T  S  S  L  *  C  R  V  D  T  N  Q  R  P  M  A  K  G  E  T  Y  W  A  W  D  F  W  *  C  I  R  R  I  Q  Q  :  R  N  W  S  F  M  C  D  E  R  S  *  I  I  T  R  *  S  E  I  C  R  E  H  K  A  I  R  A   : G  N  *  C  S  Q  S  S  Q  A  P  K  Y  C  P  V  L  R  Q  R  S   : S  W  *  P  I  L  H  L  S  G  I  C  S  S  W  F  Y  Q  *  I  H  P  *  S  L  *  N  N  Y  R  I  H  S </second_frame>
            <third_frame>   M  E  K  K  K  E  R  E  D  F  D  L  T  M  K  I  F  F  L  S  F  S  Y  H  F  S  L  *  L  S  I  P  S  F  L  Y  N  F  F  P  G  T  R  R  R  R  P  T  R  R  R  R  V  F  P  P  F  L  P  F  S  E  V  P  L  F  S  T  M  L  L  N  A  G  F  V  Q  C  Y  Y  Y  Y  L  F  K  A  S  N  V  P  C  I  L  *  P  K  L  P  Q  A  M  R  W  W  Q  S  A  F  S  S  S  S  G  S  S  S  S  S  S  S  C  S  S  S  K  V  Y  S  D  D  S  L  L  A  S  G  G  G  I  R  Y  T  I  K  S  A  F  F  F  A  R  K  R  R  H  A  R  A  K  K  L  Q  N  L  T  E  H  D  G  D  D  W  R  S  H  C  S  N  D  N  L  P  S  K  Y  S  S  D  R  P  P  P  Q  P  L  P  L  P  E  L  H  L  V  L  R  H  E  S  D  A  V  S  N  E  P  N  V  P  L  P  S  P  S  D  A  H  L  H  H  R  T  G  E  D  S  S  T  R  K  D  G  V  A  S  H  G  R :   L  S  S  Q  D  G  R  K  K  K  K  E  H  L  G  S  R  L  S  R  K  T  P  Q  K  L  H  V  A  D  R  A  S  D  I  R  I  S  A  P  I  S  A  P  T  T  P  Y  A  S  P  G  V  S  P  L  K  A  G  D  L  L  N  H  N  Y  M  A  F  P  G  A  F  Q  V  C  S  A  P  E  M  P  P  S  D  T  L  Q  Y  P  G  F  S  Y  H  V  L  P  E  K  N  A  F  S  V  D  N  S  P  H  H  S  P  R  V  S  P  Q  R  S  G  K  I  A  S  G  P  A  S  P  L  H  Q  L  L  P  N  E  N  S  T  A  R  R  E  S  S  A  Q  G  N  V  H  P  L  P  L  P  P  L  G  A  T  P  S  H  P  T  S  I  P  P  V  P  S  N  A  E  L  T  P  I  K  G  Q  W  Q  K  G  K  L  I  G  R  G  T  F  G  S  V  Y  V  A  S  N  R :   E  T  G  A  L  C  A  M  K  E  V  E  L  L  P  D  D  P  K  S  A  E  S  I  R  Q  L  E  Q  :  E  I  N  V  L  S  H  L  K  H  P  N  I  V  Q  Y  Y  G  S  E  V  :  V  G  D  R  F  Y  I  Y  L  E  Y  V  H  P  G  S  I  N  K  F  I  R  D  H  C  E  T  I  T  E  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25748" stop="26205"/>
                    <exon start="26486" stop="27103"/>
                    <exon start="27202" stop="27289"/>
                    <exon start="27685" stop="27747"/>
                    <exon start="27839" stop="27934"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLPQAMRWWQSAFSSSSGSSSSSSSCSSSKVYSDDSLLASGGGIRYTIKSAFFFARKRRHARAKKLQNLTEHDGDDWRSHCSNDNLPSKYSSDRPPPQPLPLPELHLVLRHESDAVSNEPNVPLPSPSDAHLHHRTGEDSSTRKDGVASHGRLSSQDGRKKKKEHLGSRLSRKTPQKLHVADRASDIRISAPISAPTTPYASPGVSPLKAGDLLNHNYMAFPGAFQVCSAPEMPPSDTLQYPGFSYHVLPEKNAFSVDNSPHHSPRVSPQRSGKIASGPASPLHQLLPNENSTARRESSAQGNVHPLPLPPLGATPSHPTSIPPVPSNAELTPIKGQWQKGKLIGRGTFGSVYVASNRETGALCAMKEVELLPDDPKSAESIRQLEQEINVLSHLKHPNIVQYYGSEVVGDRFYIYLEYVHPGSINKFIRDHCETITESI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25498" stop="25719"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHDEDIFLVFFLSFFLITLHSFLLVQLFSGNPPTPTNPTPASFPTFFTLLRGSSVFNYAPERRFCTVLLLLSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30231" PGL_stop="30644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30231" e_stop="30644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30231" e_stop="30644" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30231" stop="30644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAACTGATTTTGGGATGGAAGTAGCAGTCATTCTTTTTGGTTTCTCTTTCAACGAGAGCTGAACTCGTGAATACAATGTAAACCTCTATATATGTGCTGTGTAGATAGCTTGAAACCGAAAACTAAGTTGGAGCCAGTAGGTGCTCTGGCTTGTTGTCAATATTAACACCTCGAGAGGAACATAGGTTTATTATCATCCAGGGAAGTTTTTTCCTGCTGACCTTGGAGTTTAGAAGTAGATTTTCTGTAATGACTTCCAAAGCAGGAGATTCAATAATAATCAAAAGAAAATGAAATGCTTTGACAAATTATACAATTCTTTACTGAATCTCACAATCATGTCTACTGGTTTTGTTTGTATCTCATGATTGCTTATATTGCAACTTAGTGGCTATATTTTTCAGTGTGTTAA</gDNA_template>
            <first_frame> L  N  *  F  W  D  G  S  S  S  H  S  F  W  F  L  F  Q  R  E  L  N  S  *  I  Q  C  K  P  L  Y  M  C  C  V  D  S  L  K  P  K  T  K  L  E  P  V  G  A  L  A  C  C  Q  Y  *  H  L  E  R  N  I  G  L  L  S  S  R  E  V  F  S  C  *  P  W  S  L  E  V  D  F  L  *  *  L  P  K  Q  E  I  Q  *  *  S  K  E  N  E  M  L  *  Q  I  I  Q  F  F  T  E  S  H  N  H  V  Y  W  F  C  L  Y  L  M  I  A  Y  I  A  T  *  W  L  Y  F  S  V  C  * </first_frame>
            <second_frame>  S  T  D  F  G  M  E  V  A  V  I  L  F  G  F  S  F  N  E  S  *  T  R  E  Y  N  V  N  L  Y  I  C  A  V  *  I  A  *  N  R  K  L  S  W  S  Q  *  V  L  W  L  V  V  N  I  N  T  S  R  G  T  *  V  Y  Y  H  P  G  K  F  F  P  A  D  L  G  V  *  K  *  I  F  C  N  D  F  Q  S  R  R  F  N  N  N  Q  K  K  M  K  C  F  D  K  L  Y  N  S  L  L  N  L  T  I  M  S  T  G  F  V  C  I  S  *  L  L  I  L  Q  L  S  G  Y  I  F  Q  C  V   </second_frame>
            <third_frame>   Q  L  I  L  G  W  K  *  Q  S  F  F  L  V  S  L  S  T  R  A  E  L  V  N  T  M  *  T  S  I  Y  V  L  C  R  *  L  E  T  E  N  *  V  G  A  S  R  C  S  G  L  L  S  I  L  T  P  R  E  E  H  R  F  I  I  I  Q  G  S  F  F  L  L  T  L  E  F  R  S  R  F  S  V  M  T  S  K  A  G  D  S  I  I  I  K  R  K  *  N  A  L  T  N  Y  T  I  L  Y  *  I  S  Q  S  C  L  L  V  L  F  V  S  H  D  C  L  Y  C  N  L  V  A  I  F  F  S  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="45329" PGL_stop="46723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45329" e_stop="45638"/>
            <exon e_start="46498" e_stop="46723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="0.968"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="45329" e_stop="45638" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="45639" i_stop="46497" i_length="859"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="46498" e_stop="46723" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45329" stop="45638"/>
              <exon start="46498" stop="46723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAGTCCACAGGTATTGACAGAAACAGGAAAATCGCATGCTGTCCACCGCGTACTGTAGCATAAACTGCTCCTTCAAAAACTCAAAGGGTTTCCGTTTTTTTTTTTTCCATTGAAACGTTTTTCGAGTTCAAGAGAAAATGGCGAATCCGAGATGCTATTTGGACATTAGCCTTGGTGGAGAGCTTGAAGGAAGAATGGTGATTGAGCTTTACAAAGACATCGTTCCTAAAACCGTTGAAAATTTCAGGGCTCTTTGTACTGGTGAGAAAGGCATTGGCCCCAACACCGGTGTCCCCCTCCATTTCAAG : GGTTCTTGTTTTCATCATGTCATCAGAGGCTTTATGTTACAAGGCGGGGACATTTCTACTGGAAACGGCAGTGGTGGGGAGTCAATTTATGGCTTGACATTTGAAGATGAAAATTTCAAACTCAAACATGAAAGAAAAGGAATGCTTTCTATGGCTAATTCTGGTCCAAATACAAACGGGTCTCAATTTTTCATCACCGCTTCTCAAACACATGTTCTAGATGGAA</gDNA_template>
            <first_frame> T  S  P  Q  V  L  T  E  T  G  K  S  H  A  V  H  R  V  L  *  H  K  L  L  L  Q  K  L  K  G  F  P  F  F  F  F  P  L  K  R  F  S  S  S  R  E  N  G  E  S  E  M  L  F  G  H  *  P  W  W  R  A  *  R  K  N  G  D  *  A  L  Q  R  H  R  S  *  N  R  *  K  F  Q  G  S  L  Y  W  *  E  R  H  W  P  Q  H  R  C  P  P  P  F  Q   : G  F  L  F  S  S  C  H  Q  R  L  Y  V  T  R  R  G  H  F  Y  W  K  R  Q  W  W  G  V  N  L  W  L  D  I  *  R  *  K  F  Q  T  Q  T  *  K  K  R  N  A  F  Y  G  *  F  W  S  K  Y  K  R  V  S  I  F  H  H  R  F  S  N  T  C  S  R  W   </first_frame>
            <second_frame>  P  V  H  R  Y  *  Q  K  Q  E  N  R  M  L  S  T  A  Y  C  S  I  N  C  S  F  K  N  S  K  G  F  R  F  F  F  F  H  *  N  V  F  R  V  Q  E  K  M  A  N  P  R  C  Y  L  D  I  S  L  G  G  E  L  E  G  R  M  V  I  E  L  Y  K  D  I  V  P  K  T  V  E  N  F  R  A  L  C  T  G  E  K  G  I  G  P  N  T  G  V  P  L  H  F  K  :  G  S  C  F  H  H  V  I  R  G  F  M  L  Q  G  G  D  I  S  T  G  N  G  S  G  G  E  S  I  Y  G  L  T  F  E  D  E  N  F  K  L  K  H  E  R  K  G  M  L  S  M  A  N  S  G  P  N  T  N  G  S  Q  F  F  I  T  A  S  Q  T  H  V  L  D  G  </second_frame>
            <third_frame>   Q  S  T  G  I  D  R  N  R  K  I  A  C  C  P  P  R  T  V  A  *  T  A  P  S  K  T  Q  R  V  S  V  F  F  F  S  I  E  T  F  F  E  F  K  R  K  W  R  I  R  D  A  I  W  T  L  A  L  V  E  S  L  K  E  E  W  *  L  S  F  T  K  T  S  F  L  K  P  L  K  I  S  G  L  F  V  L  V  R  K  A  L  A  P  T  P  V  S  P  S  I  S  R :   V  L  V  F  I  M  S  S  E  A  L  C  Y  K  A  G  T  F  L  L  E  T  A  V  V  G  S  Q  F  M  A  *  H  L  K  M  K  I  S  N  S  N  M  K  E  K  E  C  F  L  W  L  I  L  V  Q  I  Q  T  G  L  N  F  S  S  P  L  L  K  H  M  F  *  M  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45444" stop="45638"/>
                    <exon start="46498" stop="46722"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVFRVQEKMANPRCYLDISLGGELEGRMVIELYKDIVPKTVENFRALCTGEKGIGPNTGVPLHFKGSCFHHVIRGFMLQGGDISTGNGSGGESIYGLTFEDENFKLKHERKGMLSMANSGPNTNGSQFFITASQTHVLDG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="47287" PGL_stop="51079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47287" e_stop="47371"/>
            <exon e_start="47466" e_stop="47518"/>
            <exon e_start="48485" e_stop="48589"/>
            <exon e_start="49548" e_stop="49565"/>
            <exon e_start="50892" e_stop="51079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.375" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.979" e_score="0.962"/>
          <exon-intron don_prob="0.915" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47287" e_stop="47371" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.375">
            <gDNA_intron_boundary i_start="47372" i_stop="47465" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="47466" e_stop="47518" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.979">
            <gDNA_intron_boundary i_start="47519" i_stop="48484" i_length="966"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48485" e_stop="48589" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48590" i_stop="49547" i_length="958"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="49548" e_stop="49565" e_length="18"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49566" i_stop="50891" i_length="1326"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="50892" e_stop="51079" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47287" stop="47371"/>
              <exon start="47466" stop="47518"/>
              <exon start="48485" stop="48589"/>
              <exon start="49548" stop="49565"/>
              <exon start="50892" stop="51079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGACTATAAGATGGCTATCAGGAAGTACAGGAAGGCTGTCCGTTATACCGACTTATGCTGGGAAAAGGACGACATTGATGAAG : TAAAAAGCGAGTATTTGAGGAAGACAAAGTCCCAGATACTTGCAAATAGTTCT : GCCTGTAAACTGAAGATAGGAGATCTAACTGGAGCATTGATAGATGCGAATGATGCAATTTATGATGGAGAAGACAATGTCAAAGCTTTTTACCGCCAAGGCCAG : GTATATATGGCAATGAAT : ATTTCTCACTTGACTTTAATTCTGCTTATTAGTGGGCATTCTTCTGTTGAATACAAAATATATAGCCTGAATATACCTCAACGTGTTTTGTACAGAAAGTGAAAGGGAACTTAATGCAGGATAAAGTGTCTTTCCATTTATAATATAATGATATGGATGCCCCAAACTCGGTTATCTATGGCTTCCGC</gDNA_template>
            <first_frame> E  D  Y  K  M  A  I  R  K  Y  R  K  A  V  R  Y  T  D  L  C  W  E  K  D  D  I  D  E   : V  K  S  E  Y  L  R  K  T  K  S  Q  I  L  A  N  S  S  :  A  C  K  L  K  I  G  D  L  T  G  A  L  I  D  A  N  D  A  I  Y  D  G  E  D  N  V  K  A  F  Y  R  Q  G  Q  :  V  Y  M  A  M  N  :  I  S  H  L  T  L  I  L  L  I  S  G  H  S  S  V  E  Y  K  I  Y  S  L  N  I  P  Q  R  V  L  Y  R  K  *  K  G  T  *  C  R  I  K  C  L  S  I  Y  N  I  M  I  W  M  P  Q  T  R  L  S  M  A  S   </first_frame>
            <second_frame>  K  T  I  R  W  L  S  G  S  T  G  R  L  S  V  I  P  T  Y  A  G  K  R  T  T  L  M  K  :  *  K  A  S  I  *  G  R  Q  S  P  R  Y  L  Q  I  V  L :   P  V  N  *  R  *  E  I  *  L  E  H  *  *  M  R  M  M  Q  F  M  M  E  K  T  M  S  K  L  F  T  A  K  A  R :   Y  I  W  Q  *  I :   F  L  T  *  L  *  F  C  L  L  V  G  I  L  L  L  N  T  K  Y  I  A  *  I  Y  L  N  V  F  C  T  E  S  E  R  E  L  N  A  G  *  S  V  F  P  F  I  I  *  *  Y  G  C  P  K  L  G  Y  L  W  L  P  </second_frame>
            <third_frame>   R  L  *  D  G  Y  Q  E  V  Q  E  G  C  P  L  Y  R  L  M  L  G  K  G  R  H  *  *  S :   K  K  R  V  F  E  E  D  K  V  P  D  T  C  K  *  F   : C  L  *  T  E  D  R  R  S  N  W  S  I  D  R  C  E  *  C  N  L  *  W  R  R  Q  C  Q  S  F  L  P  P  R  P   : G  I  Y  G  N  E   : Y  F  S  L  D  F  N  S  A  Y  *  W  A  F  F  C  *  I  Q  N  I  *  P  E  Y  T  S  T  C  F  V  Q  K  V  K  G  N  L  M  Q  D  K  V  S  F  H  L  *  Y  N  D  M  D  A  P  N  S  V  I  Y  G  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47287" stop="47371"/>
                    <exon start="47466" stop="47518"/>
                    <exon start="48485" stop="48589"/>
                    <exon start="49548" stop="49565"/>
                    <exon start="50892" stop="50993"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDYKMAIRKYRKAVRYTDLCWEKDDIDEVKSEYLRKTKSQILANSSACKLKIGDLTGALIDANDAIYDGEDNVKAFYRQGQVYMAMNISHLTLILLISGHSSVEYKIYSLNIPQRVLYRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="53493" PGL_stop="51337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53493" e_stop="53196"/>
            <exon e_start="52919" e_stop="52738"/>
            <exon e_start="52627" e_stop="52444"/>
            <exon e_start="52348" e_stop="52187"/>
            <exon e_start="52096" e_stop="51794"/>
            <exon e_start="51707" e_stop="51337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.977"/>
          <exon-intron don_prob="0.986" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="53493" e_stop="53196" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53195" i_stop="52920" i_length="276"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52919" e_stop="52738" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.979">
            <gDNA_intron_boundary i_start="52737" i_stop="52628" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52627" e_stop="52444" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52443" i_stop="52349" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52348" e_stop="52187" e_length="162"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.814">
            <gDNA_intron_boundary i_start="52186" i_stop="52097" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52096" e_stop="51794" e_length="303"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51793" i_stop="51708" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51707" e_stop="51337" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53493" stop="53196"/>
              <exon start="52919" stop="52738"/>
              <exon start="52627" stop="52444"/>
              <exon start="52348" stop="52187"/>
              <exon start="52096" stop="51794"/>
              <exon start="51707" stop="51337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53346" stop="53196"/>
              <exon start="52919" stop="52771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52276" stop="52187"/>
              <exon start="52096" stop="51820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACGAATCACTAGGTTTTAACTTTCTTTTAACATAACAATACACACTTTTCTCCCCTTCTCTTTCAAATATCAAAAACACAAAACTCTTTTTTGTTAGGTAATAACTCAACATGGGGAGGATGGTTCTTATAGCTGCAGCAATGACTCTTTTTGTAACCCTTCAAGTTTTACAACCTCCATTAGTAGTTTCTGCCGCCACCAAAGGAAAGACGGTAACCGTTTTGAGTATCGATGGAGGTGGTATTAGAGGCATTATTCCTGGAACCCTACTTGCCTTCCTTGAATCTAAACTTCAG : GAACTTGATGGACCAAATGCAAGAATTGCAGATTACTTCGATGTAGTAGCAGGAACAAGCACAGGTGGATTAGTAACAACTATGCTTACTGCTCCTAACAAGGATAATCGTCCTTTATATCAAGCAAAAGATATTTCCAATTTCTACATGCAACATGGCCCTCAAATTTTTCCTCAAAGCAG : GCGTAACAGCTTTGTGAGAAGGATCACAAATTTGTTTGGAGGACCAAAGTATGATGGCATATACTTGAGAACAATTATTAATTCAATATTAGGCAATCTTACAATGAAGCAAACGTTGACTAATACAGTCATACCTACTTTTGATATCAAACGTCTTCAACCAATAATCTTCAGTACTGCTGAT : GCAAAAGCAAATATCTCAAAGAATGCTCAATTATCAGACGTTTGCCTTAGTACCTCAGCCGCACCCACTTATTTCCCAGTGCACAGTTTTGAGACTAAGGATGCTCAAGGCAAAACGCGTACATTTGATCTTGTCGATGGAGGTGTAGCTGCAAATAATCCA : ACCTTAATGGCAATAACATACGTTTCAAAACAAATCATGACGGGCAACTTTCAATACGAGGGTATGAAGAATATGGACTGCAACAAAATGTTGGTTCTGTCGTTGGGCACGGGTATAGGCAAGCAAGAAGAGAAGTATAATGCTACAGTGGCTTCCAGATGGGGGATGGTAGGTTGGGTGTACAACAATGGTGCCACCCCTTTGATAGATATTTATGGTGATGCTAGTGCTGATATGGTAGACATACATACTTCCACCATGTTTCAGACCCTTGGTAGTGAGAAGAACTACATCAGGATTCAG : GATGACAATTTGACAGGGGAGGCTGCATCTATGGATATTGCAACGACACAAAACATGGAGACACTGGTACAAATTGGTAATGATCTATTGAAGAAGCCAATTTCAAGGGTCAACTTAGAAACAGGCCGATACGAACCAGTTGTTGGGGAAGGCACCAACGAAGCTGCTATAGTCCGCTTCGCTCAGTTGCTTTCAGAGGAAAGGAAGCTCCGAATAAACTAACGAAATACTTGCAGAAATTTTACACACAATTTGTTGGACGATTAGAAGATTAATTTGTATTCTTTTACCCTTCAATAGTTAAGCGCCTAACTAGTAAACCATGTTGTAATATGAGAATAAACATCCCAAGAAGAAAATAAAATTTATGT</gDNA_template>
            <first_frame> R  R  I  T  R  F  *  L  S  F  N  I  T  I  H  T  F  L  P  F  S  F  K  Y  Q  K  H  K  T  L  F  C  *  V  I  T  Q  H  G  E  D  G  S  Y  S  C  S  N  D  S  F  C  N  P  S  S  F  T  T  S  I  S  S  F  C  R  H  Q  R  K  D  G  N  R  F  E  Y  R  W  R  W  Y  *  R  H  Y  S  W  N  P  T  C  L  P  *  I  *  T  S   : G  T  *  W  T  K  C  K  N  C  R  L  L  R  C  S  S  R  N  K  H  R  W  I  S  N  N  Y  A  Y  C  S  *  Q  G  *  S  S  F  I  S  S  K  R  Y  F  Q  F  L  H  A  T  W  P  S  N  F  S  S  K  Q  :  A  *  Q  L  C  E  K  D  H  K  F  V  W  R  T  K  V  *  W  H  I  L  E  N  N  Y  *  F  N  I  R  Q  S  Y  N  E  A  N  V  D  *  Y  S  H  T  Y  F  *  Y  Q  T  S  S  T  N  N  L  Q  Y  C  *   : C  K  S  K  Y  L  K  E  C  S  I  I  R  R  L  P  *  Y  L  S  R  T  H  L  F  P  S  A  Q  F  *  D  *  G  C  S  R  Q  N  A  Y  I  *  S  C  R  W  R  C  S  C  K  *  S   : N  L  N  G  N  N  I  R  F  K  T  N  H  D  G  Q  L  S  I  R  G  Y  E  E  Y  G  L  Q  Q  N  V  G  S  V  V  G  H  G  Y  R  Q  A  R  R  E  V  *  C  Y  S  G  F  Q  M  G  D  G  R  L  G  V  Q  Q  W  C  H  P  F  D  R  Y  L  W  *  C  *  C  *  Y  G  R  H  T  Y  F  H  H  V  S  D  P  W  *  *  E  E  L  H  Q  D  S   : G  *  Q  F  D  R  G  G  C  I  Y  G  Y  C  N  D  T  K  H  G  D  T  G  T  N  W  *  *  S  I  E  E  A  N  F  K  G  Q  L  R  N  R  P  I  R  T  S  C  W  G  R  H  Q  R  S  C  Y  S  P  L  R  S  V  A  F  R  G  K  E  A  P  N  K  L  T  K  Y  L  Q  K  F  Y  T  Q  F  V  G  R  L  E  D  *  F  V  F  F  Y  P  S  I  V  K  R  L  T  S  K  P  C  C  N  M  R  I  N  I  P  R  R  K  *  N  L  C </first_frame>
            <second_frame>  D  E  S  L  G  F  N  F  L  L  T  *  Q  Y  T  L  F  S  P  S  L  S  N  I  K  N  T  K  L  F  F  V  R  *  *  L  N  M  G  R  M  V  L  I  A  A  A  M  T  L  F  V  T  L  Q  V  L  Q  P  P  L  V  V  S  A  A  T  K  G  K  T  V  T  V  L  S  I  D  G  G  G  I  R  G  I  I  P  G  T  L  L  A  F  L  E  S  K  L  Q  :  E  L  D  G  P  N  A  R  I  A  D  Y  F  D  V  V  A  G  T  S  T  G  G  L  V  T  T  M  L  T  A  P  N  K  D  N  R  P  L  Y  Q  A  K  D  I  S  N  F  Y  M  Q  H  G  P  Q  I  F  P  Q  S  R :   R  N  S  F  V  R  R  I  T  N  L  F  G  G  P  K  Y  D  G  I  Y  L  R  T  I  I  N  S  I  L  G  N  L  T  M  K  Q  T  L  T  N  T  V  I  P  T  F  D  I  K  R  L  Q  P  I  I  F  S  T  A  D  :  A  K  A  N  I  S  K  N  A  Q  L  S  D  V  C  L  S  T  S  A  A  P  T  Y  F  P  V  H  S  F  E  T  K  D  A  Q  G  K  T  R  T  F  D  L  V  D  G  G  V  A  A  N  N  P  :  T  L  M  A  I  T  Y  V  S  K  Q  I  M  T  G  N  F  Q  Y  E  G  M  K  N  M  D  C  N  K  M  L  V  L  S  L  G  T  G  I  G  K  Q  E  E  K  Y  N  A  T  V  A  S  R  W  G  M  V  G  W  V  Y  N  N  G  A  T  P  L  I  D  I  Y  G  D  A  S  A  D  M  V  D  I  H  T  S  T  M  F  Q  T  L  G  S  E  K  N  Y  I  R  I  Q  :  D  D  N  L  T  G  E  A  A  S  M  D  I  A  T  T  Q  N  M  E  T  L  V  Q  I  G  N  D  L  L  K  K  P  I  S  R  V  N  L  E  T  G  R  Y  E  P  V  V  G  E  G  T  N  E  A  A  I  V  R  F  A  Q  L  L  S  E  E  R  K  L  R  I  N  *  R  N  T  C  R  N  F  T  H  N  L  L  D  D  *  K  I  N  L  Y  S  F  T  L  Q  *  L  S  A  *  L  V  N  H  V  V  I  *  E  *  T  S  Q  E  E  N  K  I  Y   </second_frame>
            <third_frame>   T  N  H  *  V  L  T  F  F  *  H  N  N  T  H  F  S  P  L  L  F  Q  I  S  K  T  Q  N  S  F  L  L  G  N  N  S  T  W  G  G  W  F  L  *  L  Q  Q  *  L  F  L  *  P  F  K  F  Y  N  L  H  *  *  F  L  P  P  P  K  E  R  R  *  P  F  *  V  S  M  E  V  V  L  E  A  L  F  L  E  P  Y  L  P  S  L  N  L  N  F  R :   N  L  M  D  Q  M  Q  E  L  Q  I  T  S  M  *  *  Q  E  Q  A  Q  V  D  *  *  Q  L  C  L  L  L  L  T  R  I  I  V  L  Y  I  K  Q  K  I  F  P  I  S  T  C  N  M  A  L  K  F  F  L  K  A   : G  V  T  A  L  *  E  G  S  Q  I  C  L  E  D  Q  S  M  M  A  Y  T  *  E  Q  L  L  I  Q  Y  *  A  I  L  Q  *  S  K  R  *  L  I  Q  S  Y  L  L  L  I  S  N  V  F  N  Q  *  S  S  V  L  L  M :   Q  K  Q  I  S  Q  R  M  L  N  Y  Q  T  F  A  L  V  P  Q  P  H  P  L  I  S  Q  C  T  V  L  R  L  R  M  L  K  A  K  R  V  H  L  I  L  S  M  E  V  *  L  Q  I  I  Q :   P  *  W  Q  *  H  T  F  Q  N  K  S  *  R  A  T  F  N  T  R  V  *  R  I  W  T  A  T  K  C  W  F  C  R  W  A  R  V  *  A  S  K  K  R  S  I  M  L  Q  W  L  P  D  G  G  W  *  V  G  C  T  T  M  V  P  P  L  *  *  I  F  M  V  M  L  V  L  I  W  *  T  Y  I  L  P  P  C  F  R  P  L  V  V  R  R  T  T  S  G  F  R :   M  T  I  *  Q  G  R  L  H  L  W  I  L  Q  R  H  K  T  W  R  H  W  Y  K  L  V  M  I  Y  *  R  S  Q  F  Q  G  S  T  *  K  Q  A  D  T  N  Q  L  L  G  K  A  P  T  K  L  L  *  S  A  S  L  S  C  F  Q  R  K  G  S  S  E  *  T  N  E  I  L  A  E  I  L  H  T  I  C  W  T  I  R  R  L  I  C  I  L  L  P  F  N  S  *  A  P  N  *  *  T  M  L  *  Y  E  N  K  H  P  K  K  K  I  K  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53387" stop="53196"/>
                    <exon start="52919" stop="52738"/>
                    <exon start="52627" stop="52444"/>
                    <exon start="52348" stop="52187"/>
                    <exon start="52096" stop="51794"/>
                    <exon start="51707" stop="51486"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNMGRMVLIAAAMTLFVTLQVLQPPLVVSAATKGKTVTVLSIDGGGIRGIIPGTLLAFLESKLQELDGPNARIADYFDVVAGTSTGGLVTTMLTAPNKDNRPLYQAKDISNFYMQHGPQIFPQSRRNSFVRRITNLFGGPKYDGIYLRTIINSILGNLTMKQTLTNTVIPTFDIKRLQPIIFSTADAKANISKNAQLSDVCLSTSAAPTYFPVHSFETKDAQGKTRTFDLVDGGVAANNPTLMAITYVSKQIMTGNFQYEGMKNMDCNKMLVLSLGTGIGKQEEKYNATVASRWGMVGWVYNNGATPLIDIYGDASADMVDIHTSTMFQTLGSEKNYIRIQDDNLTGEAASMDIATTQNMETLVQIGNDLLKKPISRVNLETGRYEPVVGEGTNEAAIVRFAQLLSEERKLRIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="72755" PGL_stop="75632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72755" e_stop="73335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="72755" e_stop="73335" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72755" stop="73335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTTGGAGCTTTAATGGTGAATGCGTTCCAGAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGGGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGGGTAAATTCTTCTTCTTCTTCTTGAATATTTTCTTTGTCAATCTGCTTATACGTAGTTGTTTTTCCTTCTTGGTTTTCTTTCAAGTGTTTGATGCGAAAGATGGGTATGAAATTATCATTGCTTCCCGCGGTTCAGGGTACTGGTTCTTGAACAATTGAACCAGCACTCTTGAACAATTAAACCAACATCAACGGGTTCTTGAACAATTGAAGCAAGACCAACTGGTTTCTGAACAATTGAACCAACACCAACCGGTTCCAACTGGTTCTTGATTGAAAAGTAGTTTCTTGATTTGTATGTTTGGGAACCATTGACAATTTTGGGTGTTTTTGTTGACTTCACTAGCTTCTTTGGATATCATTCCTTAAGGAGTCGAGGATAAAGTAAAGCATCAATCCAATGGACAATATTTTCTACT</gDNA_template>
            <first_frame> N  V  G  A  L  M  V  N  A  F  Q  K  L  E  E  R  M  Y  G  V  L  C  N  S  E  K  S  S  T  K  A  A  V  D  A  F  A  G  M  G  V  Q  V  T  V  E  D  F  V  P  F  M  G  M  G  K  F  F  F  F  F  L  N  I  F  F  V  N  L  L  I  R  S  C  F  S  F  L  V  F  F  Q  V  F  D  A  K  D  G  Y  E  I  I  I  A  S  R  G  S  G  Y  W  F  L  N  N  *  T  S  T  L  E  Q  L  N  Q  H  Q  R  V  L  E  Q  L  K  Q  D  Q  L  V  S  E  Q  L  N  Q  H  Q  P  V  P  T  G  S  *  L  K  S  S  F  L  I  C  M  F  G  N  H  *  Q  F  W  V  F  L  L  T  S  L  A  S  L  D  I  I  P  *  G  V  E  D  K  V  K  H  Q  S  N  G  Q  Y  F  L   </first_frame>
            <second_frame>  M  L  E  L  *  W  *  M  R  S  R  N  W  K  R  E  C  T  V  C  F  A  I  V  R  N  H  Q  Q  K  R  L  W  M  L  L  L  G  W  V  F  K  L  P  L  K  I  L  C  L  S  W  A  W  V  N  S  S  S  S  S  *  I  F  S  L  S  I  C  L  Y  V  V  V  F  P  S  W  F  S  F  K  C  L  M  R  K  M  G  M  K  L  S  L  L  P  A  V  Q  G  T  G  S  *  T  I  E  P  A  L  L  N  N  *  T  N  I  N  G  F  L  N  N  *  S  K  T  N  W  F  L  N  N  *  T  N  T  N  R  F  Q  L  V  L  D  *  K  V  V  S  *  F  V  C  L  G  T  I  D  N  F  G  C  F  C  *  L  H  *  L  L  W  I  S  F  L  K  E  S  R  I  K  *  S  I  N  P  M  D  N  I  F  Y  </second_frame>
            <third_frame>   C  W  S  F  N  G  E  C  V  P  E  I  G  R  E  N  V  R  C  A  L  Q  *  *  E  I  I  N  K  S  G  C  G  C  F  C  W  D  G  C  S  S  Y  R  *  R  F  C  A  F  H  G  H  G  *  I  L  L  L  L  L  E  Y  F  L  C  Q  S  A  Y  T  *  L  F  F  L  L  G  F  L  S  S  V  *  C  E  R  W  V  *  N  Y  H  C  F  P  R  F  R  V  L  V  L  E  Q  L  N  Q  H  S  *  T  I  K  P  T  S  T  G  S  *  T  I  E  A  R  P  T  G  F  *  T  I  E  P  T  P  T  G  S  N  W  F  L  I  E  K  *  F  L  D  L  Y  V  W  E  P  L  T  I  L  G  V  F  V  D  F  T  S  F  F  G  Y  H  S  L  R  S  R  G  *  S  K  A  S  I  Q  W  T  I  F  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72755" stop="73075"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVGALMVNAFQKLEERMYGVLCNSEKSSTKAAVDAFAGMGVQVTVEDFVPFMGMGKFFFFFLNIFFVNLLIRSCFSFLVFFQVFDAKDGYEIIIASRGSGYWFLNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72765" e_stop="72917"/>
            <exon e_start="74390" e_stop="74507"/>
            <exon e_start="74585" e_stop="74654"/>
            <exon e_start="75348" e_stop="75470"/>
            <exon e_start="75573" e_stop="75632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.811" e_score="0.993"/>
          <exon-intron don_prob="0.673" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.072" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="72765" e_stop="72917" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.811">
            <gDNA_intron_boundary i_start="72918" i_stop="74389" i_length="1472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74390" e_stop="74507" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.673" acc_prob="0.971">
            <gDNA_intron_boundary i_start="74508" i_stop="74584" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74585" e_stop="74654" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.072">
            <gDNA_intron_boundary i_start="74655" i_stop="75347" i_length="693"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75348" e_stop="75470" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75471" i_stop="75572" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75573" e_stop="75632" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72765" stop="72917"/>
              <exon start="74390" stop="74507"/>
              <exon start="74585" stop="74654"/>
              <exon start="75348" stop="75470"/>
              <exon start="75573" stop="75632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTAATGGTGAATGCGTTCCAGAAATTGGAAGAGAGAATGTACGGTGTGCTTTGCAATAGTGAGAAATCATCAACAAAAGCGGCTGTGGATGCTTTTGCTGGGATGGGTGTTCAAGTTACCGTTGAAGATTTTGTGCCTTTCATGGGCATGG : GGTGTTGAAGGATTTGATGCCGAGGCTGCAAAGAAGAGGTTCTTTGAGATATATTTATTAAAGGTGATTGAAATTTCATATATTTACGAATATCTACTCTCAAAGCAGATTTCACTGG : GCAATCATTTGTAGTATGCAGACCGAATTATGGCATAGGTGTCCCTGGTGCCTTTGAACTTTTCTCTCAG : GTCCATCCATTTCTTCACAGTATATATGCAAACACACACACTATGCGTTGGTTTGTAATGTAGTTCGGGAGGACGTAGTACTTTTATTAAGGCTAAAGTGTACAACTCGGATGAAAATCACAG : GTTTTGATGCAATTGTATCTGCTGATGCCTTAAAAAGTTTGAAGCCTGCTCCTGATATTT</gDNA_template>
            <first_frame> L  *  W  *  M  R  S  R  N  W  K  R  E  C  T  V  C  F  A  I  V  R  N  H  Q  Q  K  R  L  W  M  L  L  L  G  W  V  F  K  L  P  L  K  I  L  C  L  S  W  A  W  :  G  V  E  G  F  D  A  E  A  A  K  K  R  F  F  E  I  Y  L  L  K  V  I  E  I  S  Y  I  Y  E  Y  L  L  S  K  Q  I  S  L   : G  N  H  L  *  Y  A  D  R  I  M  A  *  V  S  L  V  P  L  N  F  S  L  R :   S  I  H  F  F  T  V  Y  M  Q  T  H  T  L  C  V  G  L  *  C  S  S  G  G  R  S  T  F  I  K  A  K  V  Y  N  S  D  E  N  H  R :   F  *  C  N  C  I  C  *  C  L  K  K  F  E  A  C  S  *  Y   </first_frame>
            <second_frame>  F  N  G  E  C  V  P  E  I  G  R  E  N  V  R  C  A  L  Q  *  *  E  I  I  N  K  S  G  C  G  C  F  C  W  D  G  C  S  S  Y  R  *  R  F  C  A  F  H  G  H  G :   V  L  K  D  L  M  P  R  L  Q  R  R  G  S  L  R  Y  I  Y  *  R  *  L  K  F  H  I  F  T  N  I  Y  S  Q  S  R  F  H  W  :  A  I  I  C  S  M  Q  T  E  L  W  H  R  C  P  W  C  L  *  T  F  L  S   : G  P  S  I  S  S  Q  Y  I  C  K  H  T  H  Y  A  L  V  C  N  V  V  R  E  D  V  V  L  L  L  R  L  K  C  T  T  R  M  K  I  T   : G  F  D  A  I  V  S  A  D  A  L  K  S  L  K  P  A  P  D  I  </second_frame>
            <third_frame>   L  M  V  N  A  F  Q  K  L  E  E  R  M  Y  G  V  L  C  N  S  E  K  S  S  T  K  A  A  V  D  A  F  A  G  M  G  V  Q  V  T  V  E  D  F  V  P  F  M  G  M   : G  C  *  R  I  *  C  R  G  C  K  E  E  V  L  *  D  I  F  I  K  G  D  *  N  F  I  Y  L  R  I  S  T  L  K  A  D  F  T  G :   Q  S  F  V  V  C  R  P  N  Y  G  I  G  V  P  G  A  F  E  L  F  S  Q  :  V  H  P  F  L  H  S  I  Y  A  N  T  H  T  M  R  W  F  V  M  *  F  G  R  T  *  Y  F  Y  *  G  *  S  V  Q  L  G  *  K  S  Q  :  V  L  M  Q  L  Y  L  L  M  P  *  K  V  *  S  L  L  L  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72777" stop="72917"/>
                    <exon start="74390" stop="74507"/>
                    <exon start="74585" stop="74598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRSRNWKRECTVCFAIVRNHQQKRLWMLLLGWVFKLPLKILCLSWAWGVEGFDAEAAKKRFFEIYLLKVIEISYIYEYLLSKQISLGNHL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74642" stop="74654"/>
                    <exon start="75348" stop="75470"/>
                    <exon start="75573" stop="75631"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFLSGPSISSQYICKHTHYALVCNVVREDVVLLLRLKCTTRMKITGFDAIVSADALKSLKPAPDI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="78043" PGL_stop="78423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78043" e_stop="78423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78043" e_stop="78423" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78043" stop="78423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTATCATATTGTTGCTAGCAGACCTGTGTTTATTTAAACATAATTTTGGCATTTAAGCATTCATGTTTCTTTCTCCTACTTCAACAAACATACACAAATTTAAGCAAGTAAAAGTTTTTCCTGGTTCATCGTATCCTTCCAACTTTTGCTGCCTTACATTGGAGCAAGTAAGCTGGATAAGGAAAGATATATCCAAGAAATGGCTGCTTATGAACAGCATAAGAACAAAGAAACTACAACAAATCCAAACTTGCACAGGGGTTTGGCCCCAAGTATGATCAACTTTGGTGCACGGAATTGATCATGGTTATCATGTGACTTCACAAGCTTATACTGGAAGCAACATTCTCCCTAATGCATCCTCTATTGAGTCCACGGT</gDNA_template>
            <first_frame> T  Y  H  I  V  A  S  R  P  V  F  I  *  T  *  F  W  H  L  S  I  H  V  S  F  S  Y  F  N  K  H  T  Q  I  *  A  S  K  S  F  S  W  F  I  V  S  F  Q  L  L  L  P  Y  I  G  A  S  K  L  D  K  E  R  Y  I  Q  E  M  A  A  Y  E  Q  H  K  N  K  E  T  T  T  N  P  N  L  H  R  G  L  A  P  S  M  I  N  F  G  A  R  N  *  S  W  L  S  C  D  F  T  S  L  Y  W  K  Q  H  S  P  *  C  I  L  Y  *  V  H  G </first_frame>
            <second_frame>  L  I  I  L  L  L  A  D  L  C  L  F  K  H  N  F  G  I  *  A  F  M  F  L  S  P  T  S  T  N  I  H  K  F  K  Q  V  K  V  F  P  G  S  S  Y  P  S  N  F  C  C  L  T  L  E  Q  V  S  W  I  R  K  D  I  S  K  K  W  L  L  M  N  S  I  R  T  K  K  L  Q  Q  I  Q  T  C  T  G  V  W  P  Q  V  *  S  T  L  V  H  G  I  D  H  G  Y  H  V  T  S  Q  A  Y  T  G  S  N  I  L  P  N  A  S  S  I  E  S  T   </second_frame>
            <third_frame>   L  S  Y  C  C  *  Q  T  C  V  Y  L  N  I  I  L  A  F  K  H  S  C  F  F  L  L  L  Q  Q  T  Y  T  N  L  S  K  *  K  F  F  L  V  H  R  I  L  P  T  F  A  A  L  H  W  S  K  *  A  G  *  G  K  I  Y  P  R  N  G  C  L  *  T  A  *  E  Q  R  N  Y  N  K  S  K  L  A  Q  G  F  G  P  K  Y  D  Q  L  W  C  T  E  L  I  M  V  I  M  *  L  H  K  L  I  L  E  A  T  F  S  L  M  H  P  L  L  S  P  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78101" stop="78322"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFMFLSPTSTNIHKFKQVKVFPGSSYPSNFCCLTLEQVSWIRKDISKKWLLMNSIRTKKLQQIQTCTGVWPQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78148" stop="78345"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASKSFSWFIVSFQLLLPYIGASKLDKERYIQEMAAYEQHKNKETTTNPNLHRGLAPSMINFGARN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="85526" PGL_stop="90864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85526" e_stop="86389"/>
            <exon e_start="87736" e_stop="87866"/>
            <exon e_start="88111" e_stop="88152"/>
            <exon e_start="88252" e_stop="88360"/>
            <exon e_start="88774" e_stop="88852"/>
            <exon e_start="88990" e_stop="89286"/>
            <exon e_start="89369" e_stop="89481"/>
            <exon e_start="89651" e_stop="89758"/>
            <exon e_start="89841" e_stop="89903"/>
            <exon e_start="89994" e_stop="90161"/>
            <exon e_start="90311" e_stop="90864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="0.971"/>
          <exon-intron don_prob="0.897" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.462" acc_prob="0.588" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="85526" e_stop="86389" e_length="864"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86390" i_stop="87735" i_length="1346"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="87736" e_stop="87866" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87867" i_stop="88110" i_length="244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88111" e_stop="88152" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.897" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88153" i_stop="88251" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88252" e_stop="88360" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.462" acc_prob="0.588">
            <gDNA_intron_boundary i_start="88361" i_stop="88773" i_length="413"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88774" e_stop="88852" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.873" acc_prob="0.988">
            <gDNA_intron_boundary i_start="88853" i_stop="88989" i_length="137"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88990" e_stop="89286" e_length="297"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="89287" i_stop="89368" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89369" e_stop="89481" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.957" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89482" i_stop="89650" i_length="169"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89651" e_stop="89758" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.866" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89759" i_stop="89840" i_length="82"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="89841" e_stop="89903" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89904" i_stop="89993" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="89994" e_stop="90161" e_length="168"/>
          </exon>
          <intron i_serial="10" don_prob="0.966" acc_prob="0.989">
            <gDNA_intron_boundary i_start="90162" i_stop="90310" i_length="149"/>
          </intron>
          <exon e_serial="11" e_score="0.995">
            <gDNA_exon_boundary e_start="90311" e_stop="90864" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85526" stop="86389"/>
              <exon start="87736" stop="87804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87786" stop="87866"/>
              <exon start="88111" stop="88152"/>
              <exon start="88252" stop="88360"/>
              <exon start="88774" stop="88852"/>
              <exon start="88990" stop="89286"/>
              <exon start="89369" stop="89481"/>
              <exon start="89651" stop="89758"/>
              <exon start="89841" stop="89903"/>
              <exon start="89994" stop="90161"/>
              <exon start="90311" stop="90864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572398" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATGGCCTTGGTGTTTTCTATTTTACTTTTTTTCTTAAAATAGTATATATTTTTGGACAAAAAAGCGAACATCTCGTCGTTTCCTTTTTATCGCCTTCTGTACTCTGCAGATCCATCTTCTTCATCTCTCTTTCAACACAAATTCAAACTTCAAACTAAACAAATTTCCGCTAATTTTTACTAATTTCGTTTTCGTGCAATTTTCTCAACCTTTGAGAGCTAACTGAGCTTTTCTTTTTTTTGGCTTGATTTGTTTTTCAAGTACATTGGGTTGTTTCTGAAACCCCAATGGGTGCTTGTACTTCTAGACCCTCAAATTATGCCGGGGACAGTAATGGCAACAGAGCCACACTTCCGGTGAAATCTACTCCGAACAATAATGAGGACGGTAACAGTCATCAGCAAGAAAGGACGAAAAAGGACGAAGCTGATGTAGGTAAAAAGTCACCTTTTTTCCCTTTCTACAGTCCTAGTCCGGCGCATTATTTGTTCTCCAAGAAATCTCCGTTGAGATCTCCGGCGAATGCCAGCACTAATTCTACTCCTCGAAGGTTTTTTAAACGGCCATTTCCTCCGCCGTCTCCAGCGAAACACATCCGTGCTGTGTTGGCTCGGCGACACGGCTCTGTGAAACCGAATGAGTCTGCGATTCCCGAAGTAAATGAAACGGAGGTTGGCGGTGGCGGTGGAGGCGGCGCGGGGCTTGATAAGAGTTTTGGATTTTCGAAGAATTTTGGGAACAAGTATGAGCTGGGAGAGGAAGTTGGAAGAGGGCATTTTGGATATACTTGTAAAGCTAAGTTCAGGAAAGGTGAAGTTAAAGGACAAGAAGTTGCTGTAAAAGTCATCCCCAAATCAAAG : ATGACTACTGCAATAGCCATTGAGGATGTGAGAAGAGAGGTGAAGATATTAAGAGCTTTGACAGGACATAGCAATTTAGTAAAATTTTATGATTCATATGAAGACCACACCAATGTCTACATAGTCATGGA : GCTGTGTGAAGGAGGTGAGCTTTTGGATAGAATACTCTCTAG : AGGTGGAAAGTACTCGGAGGATGATGCAAAGACTGTAATGATACAAATACTGAAAGTTGTTGCATTTTGCCACCTTCAAGGTGTGGTACACCGGGATCTTAAGCCAGAG : AATTTCTTATTTACGTCTAAAGAGGAAAATGCACAACTTAAAGCAATAGACTTTGGACTTTCTGATTTTGTGAAGCCAG : ATGAAAGACTTAATGATATAGTTGGTAGTGCATATTATGTTGCGCCCGAGGTTCTACATAGATCTTATAGTACAGAGGCTGATGTTTGGAGTATAGGTGTCATAGCATATATCCTATTGTGTGGAAGCCGTCCTTTTTGGGCTCGAACAGAATCTGGGATATTTAGGTCTGTCCTCAAAGCTGATCCAAGTTTTGAAGAACAGCCCTGGCCTACATTATCTTCTGAGGCGAAAGACTTTGTGAAACGTCTATTGAATAAGGATCCCCGGAAAAGAATGACTGCTGCTCAGGCTTTGG : GTCATCCATGGATAAAGAATAGTCACAACATAGAAGTGCCTTTGGATATTCTGATATTCAAACTGATGAAGGCTTACATGCGGTCCTCTGCTCTTAGGAAAGCTGCACTACGG : GCTTTGTCGAAGACATTGACAGTAGATGAGCTATTCTATTTGAAGGAGCAGTTTGCACTGCTACAACCAAGCAAAAATGGCACCATAAGCTTTGACCATGTTAAAACG : GTCCTGATGAAACATGCAACAGATGCAATGAAAGAAGCTCGCATCCATGATTTTCTTGCATCG : CTTAATGCGCTGCAGTACAGGAGGATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTTCATCAGCTTGAGGCTTTTGATCGTTGGGAACAACATGCACGTTGTGCCTATGAAATCTTTGAGAAGGAAGGCAATAGGGCCATTATGATAGAAGAATTAGCTTCG : GAACTTGGTCTTAGCCCTTCGGTTCCTGTCCATGCTGTTCTACATGACTGGCTCAGGCACACTGACGGAAAGCTCAGTTTTCTTGGTTTTGCAAAGTTGTTGCATGGAGTGTCTAGCCGTTCAATTGCAAAAGTTCAATGATTCAAGCCCCACTGAATCAGAAAATGGTTCTCTTGGTGTATCTACATTCTTGTCATGAATACATTGTTTGACAGTCAAATGAGCTTGGGAGTGACGAATGGAGAAGATCAATTTATGCCCCTCAGTCTGGAGCTTCATAGATCTCATTATTTTCTCATGAGATTCCGCGGAACATCATTCCTGGAGAGGATGAGAGGTTTGACCGCCGTGTGTTATCAGAGCAGTGACATCCTGCATATAGAGTTCTTACTGTAAAGCTGTAGTTAGTTATGTTTGATTGCAGGTGAGAGTACTTCTCAGCTGGTTTTTGGTCGCACACTAGGTGTTTTAACTTGTTGGACATGCGCTGATGTCTACAATTGCATTGTGTAATGTTGTCTGCATGTTTTTATAGTTAAGAAGTTCCACCACTT</gDNA_template>
            <first_frame> I  Y  G  L  G  V  F  Y  F  T  F  F  L  K  I  V  Y  I  F  G  Q  K  S  E  H  L  V  V  S  F  L  S  P  S  V  L  C  R  S  I  F  F  I  S  L  S  T  Q  I  Q  T  S  N  *  T  N  F  R  *  F  L  L  I  S  F  S  C  N  F  L  N  L  *  E  L  T  E  L  F  F  F  L  A  *  F  V  F  Q  V  H  W  V  V  S  E  T  P  M  G  A  C  T  S  R  P  S  N  Y  A  G  D  S  N  G  N  R  A  T  L  P  V  K  S  T  P  N  N  N  E  D  G  N  S  H  Q  Q  E  R  T  K  K  D  E  A  D  V  G  K  K  S  P  F  F  P  F  Y  S  P  S  P  A  H  Y  L  F  S  K  K  S  P  L  R  S  P  A  N  A  S  T  N  S  T  P  R  R  F  F  K  R  P  F  P  P  P  S  P  A  K  H  I  R  A  V  L  A  R  R  H  G  S  V  K  P  N  E  S  A  I  P  E  V  N  E  T  E  V  G  G  G  G  G  G  G  A  G  L  D  K  S  F  G  F  S  K  N  F  G  N  K  Y  E  L  G  E  E  V  G  R  G  H  F  G  Y  T  C  K  A  K  F  R  K  G  E  V  K  G  Q  E  V  A  V  K  V  I  P  K  S  K  :  M  T  T  A  I  A  I  E  D  V  R  R  E  V  K  I  L  R  A  L  T  G  H  S  N  L  V  K  F  Y  D  S  Y  E  D  H  T  N  V  Y  I  V  M  E :   L  C  E  G  G  E  L  L  D  R  I  L  S  R :   G  G  K  Y  S  E  D  D  A  K  T  V  M  I  Q  I  L  K  V  V  A  F  C  H  L  Q  G  V  V  H  R  D  L  K  P  E  :  N  F  L  F  T  S  K  E  E  N  A  Q  L  K  A  I  D  F  G  L  S  D  F  V  K  P   : D  E  R  L  N  D  I  V  G  S  A  Y  Y  V  A  P  E  V  L  H  R  S  Y  S  T  E  A  D  V  W  S  I  G  V  I  A  Y  I  L  L  C  G  S  R  P  F  W  A  R  T  E  S  G  I  F  R  S  V  L  K  A  D  P  S  F  E  E  Q  P  W  P  T  L  S  S  E  A  K  D  F  V  K  R  L  L  N  K  D  P  R  K  R  M  T  A  A  Q  A  L   : G  H  P  W  I  K  N  S  H  N  I  E  V  P  L  D  I  L  I  F  K  L  M  K  A  Y  M  R  S  S  A  L  R  K  A  A  L  R  :  A  L  S  K  T  L  T  V  D  E  L  F  Y  L  K  E  Q  F  A  L  L  Q  P  S  K  N  G  T  I  S  F  D  H  V  K  T  :  V  L  M  K  H  A  T  D  A  M  K  E  A  R  I  H  D  F  L  A  S  :  L  N  A  L  Q  Y  R  R  M  D  F  E  E  F  C  A  A  A  L  S  V  H  Q  L  E  A  F  D  R  W  E  Q  H  A  R  C  A  Y  E  I  F  E  K  E  G  N  R  A  I  M  I  E  E  L  A  S  :  E  L  G  L  S  P  S  V  P  V  H  A  V  L  H  D  W  L  R  H  T  D  G  K  L  S  F  L  G  F  A  K  L  L  H  G  V  S  S  R  S  I  A  K  V  Q  *  F  K  P  H  *  I  R  K  W  F  S  W  C  I  Y  I  L  V  M  N  T  L  F  D  S  Q  M  S  L  G  V  T  N  G  E  D  Q  F  M  P  L  S  L  E  L  H  R  S  H  Y  F  L  M  R  F  R  G  T  S  F  L  E  R  M  R  G  L  T  A  V  C  Y  Q  S  S  D  I  L  H  I  E  F  L  L  *  S  C  S  *  L  C  L  I  A  G  E  S  T  S  Q  L  V  F  G  R  T  L  G  V  L  T  C  W  T  C  A  D  V  Y  N  C  I  V  *  C  C  L  H  V  F  I  V  K  K  F  H  H   </first_frame>
            <second_frame>  S  M  A  L  V  F  S  I  L  L  F  F  L  K  *  Y  I  F  L  D  K  K  A  N  I  S  S  F  P  F  Y  R  L  L  Y  S  A  D  P  S  S  S  S  L  F  Q  H  K  F  K  L  Q  T  K  Q  I  S  A  N  F  Y  *  F  R  F  R  A  I  F  S  T  F  E  S  *  L  S  F  S  F  F  W  L  D  L  F  F  K  Y  I  G  L  F  L  K  P  Q  W  V  L  V  L  L  D  P  Q  I  M  P  G  T  V  M  A  T  E  P  H  F  R  *  N  L  L  R  T  I  M  R  T  V  T  V  I  S  K  K  G  R  K  R  T  K  L  M  *  V  K  S  H  L  F  S  L  S  T  V  L  V  R  R  I  I  C  S  P  R  N  L  R  *  D  L  R  R  M  P  A  L  I  L  L  L  E  G  F  L  N  G  H  F  L  R  R  L  Q  R  N  T  S  V  L  C  W  L  G  D  T  A  L  *  N  R  M  S  L  R  F  P  K  *  M  K  R  R  L  A  V  A  V  E  A  A  R  G  L  I  R  V  L  D  F  R  R  I  L  G  T  S  M  S  W  E  R  K  L  E  E  G  I  L  D  I  L  V  K  L  S  S  G  K  V  K  L  K  D  K  K  L  L  *  K  S  S  P  N  Q  R :   *  L  L  Q  *  P  L  R  M  *  E  E  R  *  R  Y  *  E  L  *  Q  D  I  A  I  *  *  N  F  M  I  H  M  K  T  T  P  M  S  T  *  S  W   : S  C  V  K  E  V  S  F  W  I  E  Y  S  L   : E  V  E  S  T  R  R  M  M  Q  R  L  *  *  Y  K  Y  *  K  L  L  H  F  A  T  F  K  V  W  Y  T  G  I  L  S  Q  R :   I  S  Y  L  R  L  K  R  K  M  H  N  L  K  Q  *  T  L  D  F  L  I  L  *  S  Q  :  M  K  D  L  M  I  *  L  V  V  H  I  M  L  R  P  R  F  Y  I  D  L  I  V  Q  R  L  M  F  G  V  *  V  S  *  H  I  S  Y  C  V  E  A  V  L  F  G  L  E  Q  N  L  G  Y  L  G  L  S  S  K  L  I  Q  V  L  K  N  S  P  G  L  H  Y  L  L  R  R  K  T  L  *  N  V  Y  *  I  R  I  P  G  K  E  *  L  L  L  R  L  W  :  V  I  H  G  *  R  I  V  T  T  *  K  C  L  W  I  F  *  Y  S  N  *  *  R  L  T  C  G  P  L  L  L  G  K  L  H  Y  G :   L  C  R  R  H  *  Q  *  M  S  Y  S  I  *  R  S  S  L  H  C  Y  N  Q  A  K  M  A  P  *  A  L  T  M  L  K  R :   S  *  *  N  M  Q  Q  M  Q  *  K  K  L  A  S  M  I  F  L  H  R :   L  M  R  C  S  T  G  G  W  I  L  K  N  F  V  L  L  H  *  V  F  I  S  L  R  L  L  I  V  G  N  N  M  H  V  V  P  M  K  S  L  R  R  K  A  I  G  P  L  *  *  K  N  *  L  R :   N  L  V  L  A  L  R  F  L  S  M  L  F  Y  M  T  G  S  G  T  L  T  E  S  S  V  F  L  V  L  Q  S  C  C  M  E  C  L  A  V  Q  L  Q  K  F  N  D  S  S  P  T  E  S  E  N  G  S  L  G  V  S  T  F  L  S  *  I  H  C  L  T  V  K  *  A  W  E  *  R  M  E  K  I  N  L  C  P  S  V  W  S  F  I  D  L  I  I  F  S  *  D  S  A  E  H  H  S  W  R  G  *  E  V  *  P  P  C  V  I  R  A  V  T  S  C  I  *  S  S  Y  C  K  A  V  V  S  Y  V  *  L  Q  V  R  V  L  L  S  W  F  L  V  A  H  *  V  F  *  L  V  G  H  A  L  M  S  T  I  A  L  C  N  V  V  C  M  F  L  *  L  R  S  S  T  T  </second_frame>
            <third_frame>   L  W  P  W  C  F  L  F  Y  F  F  S  *  N  S  I  Y  F  W  T  K  K  R  T  S  R  R  F  L  F  I  A  F  C  T  L  Q  I  H  L  L  H  L  S  F  N  T  N  S  N  F  K  L  N  K  F  P  L  I  F  T  N  F  V  F  V  Q  F  S  Q  P  L  R  A  N  *  A  F  L  F  F  G  L  I  C  F  S  S  T  L  G  C  F  *  N  P  N  G  C  L  Y  F  *  T  L  K  L  C  R  G  Q  *  W  Q  Q  S  H  T  S  G  E  I  Y  S  E  Q  *  *  G  R  *  Q  S  S  A  R  K  D  E  K  G  R  S  *  C  R  *  K  V  T  F  F  P  F  L  Q  S  *  S  G  A  L  F  V  L  Q  E  I  S  V  E  I  S  G  E  C  Q  H  *  F  Y  S  S  K  V  F  *  T  A  I  S  S  A  V  S  S  E  T  H  P  C  C  V  G  S  A  T  R  L  C  E  T  E  *  V  C  D  S  R  S  K  *  N  G  G  W  R  W  R  W  R  R  R  G  A  *  *  E  F  W  I  F  E  E  F  W  E  Q  V  *  A  G  R  G  S  W  K  R  A  F  W  I  Y  L  *  S  *  V  Q  E  R  *  S  *  R  T  R  S  C  C  K  S  H  P  Q  I  K   : D  D  Y  C  N  S  H  *  G  C  E  K  R  G  E  D  I  K  S  F  D  R  T  *  Q  F  S  K  I  L  *  F  I  *  R  P  H  Q  C  L  H  S  H  G  :  A  V  *  R  R  *  A  F  G  *  N  T  L  *  :  R  W  K  V  L  G  G  *  C  K  D  C  N  D  T  N  T  E  S  C  C  I  L  P  P  S  R  C  G  T  P  G  S  *  A  R   : E  F  L  I  Y  V  *  R  G  K  C  T  T  *  S  N  R  L  W  T  F  *  F  C  E  A  R :   *  K  T  *  *  Y  S  W  *  C  I  L  C  C  A  R  G  S  T  *  I  L  *  Y  R  G  *  C  L  E  Y  R  C  H  S  I  Y  P  I  V  W  K  P  S  F  L  G  S  N  R  I  W  D  I  *  V  C  P  Q  S  *  S  K  F  *  R  T  A  L  A  Y  I  I  F  *  G  E  R  L  C  E  T  S  I  E  *  G  S  P  E  K  N  D  C  C  S  G  F  G :   S  S  M  D  K  E  *  S  Q  H  R  S  A  F  G  Y  S  D  I  Q  T  D  E  G  L  H  A  V  L  C  S  *  E  S  C  T  T   : G  F  V  E  D  I  D  S  R  *  A  I  L  F  E  G  A  V  C  T  A  T  T  K  Q  K  W  H  H  K  L  *  P  C  *  N   : G  P  D  E  T  C  N  R  C  N  E  R  S  S  H  P  *  F  S  C  I   : A  *  C  A  A  V  Q  E  D  G  F  *  R  I  L  C  C  C  I  K  C  S  S  A  *  G  F  *  S  L  G  T  T  C  T  L  C  L  *  N  L  *  E  G  R  Q  *  G  H  Y  D  R  R  I  S  F   : G  T  W  S  *  P  F  G  S  C  P  C  C  S  T  *  L  A  Q  A  H  *  R  K  A  Q  F  S  W  F  C  K  V  V  A  W  S  V  *  P  F  N  C  K  S  S  M  I  Q  A  P  L  N  Q  K  M  V  L  L  V  Y  L  H  S  C  H  E  Y  I  V  *  Q  S  N  E  L  G  S  D  E  W  R  R  S  I  Y  A  P  Q  S  G  A  S  *  I  S  L  F  S  H  E  I  P  R  N  I  I  P  G  E  D  E  R  F  D  R  R  V  L  S  E  Q  *  H  P  A  Y  R  V  L  T  V  K  L  *  L  V  M  F  D  C  R  *  E  Y  F  S  A  G  F  W  S  H  T  R  C  F  N  L  L  D  M  R  *  C  L  Q  L  H  C  V  M  L  S  A  C  F  Y  S  *  E  V  P  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85778" stop="86389"/>
                    <exon start="87736" stop="87866"/>
                    <exon start="88111" stop="88152"/>
                    <exon start="88252" stop="88360"/>
                    <exon start="88774" stop="88852"/>
                    <exon start="88990" stop="89286"/>
                    <exon start="89369" stop="89481"/>
                    <exon start="89651" stop="89758"/>
                    <exon start="89841" stop="89903"/>
                    <exon start="89994" stop="90161"/>
                    <exon start="90311" stop="90451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1860</number_coding_nucleotides>
                  <number_encoded_amino_acids>620</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVFQVHWVVSETPMGACTSRPSNYAGDSNGNRATLPVKSTPNNNEDGNSHQQERTKKDEADVGKKSPFFPFYSPSPAHYLFSKKSPLRSPANASTNSTPRRFFKRPFPPPSPAKHIRAVLARRHGSVKPNESAIPEVNETEVGGGGGGGAGLDKSFGFSKNFGNKYELGEEVGRGHFGYTCKAKFRKGEVKGQEVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHSNLVKFYDSYEDHTNVYIVMELCEGGELLDRILSRGGKYSEDDAKTVMIQILKVVAFCHLQGVVHRDLKPENFLFTSKEENAQLKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRSVLKADPSFEEQPWPTLSSEAKDFVKRLLNKDPRKRMTAAQALGHPWIKNSHNIEVPLDILIFKLMKAYMRSSALRKAALRALSKTLTVDELFYLKEQFALLQPSKNGTISFDHVKTVLMKHATDAMKEARIHDFLASLNALQYRRMDFEEFCAAALSVHQLEAFDRWEQHARCAYEIFEKEGNRAIMIEELASELGLSPSVPVHAVLHDWLRHTDGKLSFLGFAKLLHGVSSRSIAKVQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90467" stop="90706"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRKWFSWCIYILVMNTLFDSQMSLGVTNGEDQFMPLSLELHRSHYFLMRFRGTSFLERMRGLTAVCYQSSDILHIEFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="93774" PGL_stop="93107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93774" e_stop="93107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="93774" e_stop="93107" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93774" stop="93107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTTTAACATGTAATATGTGGAATATGGATGGACAGATTTTATCTACACCCTCTTTTTATTTGTAGACATCTTAATAAAGAGTTTACTCTATTTAGTGTCATGTCATGGGATATGAAAACGCATCAAATCTTTGTAGTTCGTCTTGACTTTGTATTTATGTATACTATGCACACTCTGTAGAGTTTCACATTCTCATGGATTTGACTCTTTTTGTGATTCAAATACATTTGGTATACTCACTAATTAGTAATGTTGGATCCTTGCTCACCTACTTGTATTGTTGAGTGATGCATGTAACTGAGAAAAATAATTAAATTCCAGAAACAGAACAAGGGGGAGCCAAACCATGAAAAAGGGAAACACATTCAACTTCTAATTTTCAAGACTAAAGGTACAATTTCACATCCTTTTTCAGGCTTTTGAAATTGTAGGTCTCTTTTTCTTGAAATCGAACCGCAATGTTCTATTTTGAATGGTGTTGTAGTAGTATTTAGTAGTTATTCTTGGATAGAAGTTACAACTTTAGTATTAGATACAAAAAAGTTTAAAATACTTCACATGTAGAGTCGACTTTATAGCAGTTCTGGGATTGAGAGACTAATGATGGTTGGGAATGATTTGGTAATATTCATTCCCTTAATGAGGTATTATGTGTGATTTTGA</gDNA_template>
            <first_frame> F  Y  F  N  M  *  Y  V  E  Y  G  W  T  D  F  I  Y  T  L  F  L  F  V  D  I  L  I  K  S  L  L  Y  L  V  S  C  H  G  I  *  K  R  I  K  S  L  *  F  V  L  T  L  Y  L  C  I  L  C  T  L  C  R  V  S  H  S  H  G  F  D  S  F  C  D  S  N  T  F  G  I  L  T  N  *  *  C  W  I  L  A  H  L  L  V  L  L  S  D  A  C  N  *  E  K  *  L  N  S  R  N  R  T  R  G  S  Q  T  M  K  K  G  N  T  F  N  F  *  F  S  R  L  K  V  Q  F  H  I  L  F  Q  A  F  E  I  V  G  L  F  F  L  K  S  N  R  N  V  L  F  *  M  V  L  *  *  Y  L  V  V  I  L  G  *  K  L  Q  L  *  Y  *  I  Q  K  S  L  K  Y  F  T  C  R  V  D  F  I  A  V  L  G  L  R  D  *  *  W  L  G  M  I  W  *  Y  S  F  P  *  *  G  I  M  C  D  F   </first_frame>
            <second_frame>  F  I  L  T  C  N  M  W  N  M  D  G  Q  I  L  S  T  P  S  F  Y  L  *  T  S  *  *  R  V  Y  S  I  *  C  H  V  M  G  Y  E  N  A  S  N  L  C  S  S  S  *  L  C  I  Y  V  Y  Y  A  H  S  V  E  F  H  I  L  M  D  L  T  L  F  V  I  Q  I  H  L  V  Y  S  L  I  S  N  V  G  S  L  L  T  Y  L  Y  C  *  V  M  H  V  T  E  K  N  N  *  I  P  E  T  E  Q  G  G  A  K  P  *  K  R  E  T  H  S  T  S  N  F  Q  D  *  R  Y  N  F  T  S  F  F  R  L  L  K  L  *  V  S  F  S  *  N  R  T  A  M  F  Y  F  E  W  C  C  S  S  I  *  *  L  F  L  D  R  S  Y  N  F  S  I  R  Y  K  K  V  *  N  T  S  H  V  E  S  T  L  *  Q  F  W  D  *  E  T  N  D  G  W  E  *  F  G  N  I  H  S  L  N  E  V  L  C  V  I  L  </second_frame>
            <third_frame>   L  F  *  H  V  I  C  G  I  W  M  D  R  F  Y  L  H  P  L  F  I  C  R  H  L  N  K  E  F  T  L  F  S  V  M  S  W  D  M  K  T  H  Q  I  F  V  V  R  L  D  F  V  F  M  Y  T  M  H  T  L  *  S  F  T  F  S  W  I  *  L  F  L  *  F  K  Y  I  W  Y  T  H  *  L  V  M  L  D  P  C  S  P  T  C  I  V  E  *  C  M  *  L  R  K  I  I  K  F  Q  K  Q  N  K  G  E  P  N  H  E  K  G  K  H  I  Q  L  L  I  F  K  T  K  G  T  I  S  H  P  F  S  G  F  *  N  C  R  S  L  F  L  E  I  E  P  Q  C  S  I  L  N  G  V  V  V  V  F  S  S  Y  S  W  I  E  V  T  T  L  V  L  D  T  K  K  F  K  I  L  H  M  *  S  R  L  Y  S  S  S  G  I  E  R  L  M  M  V  G  N  D  L  V  I  F  I  P  L  M  R  Y  Y  V  *  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="96690" PGL_stop="99584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96690" e_stop="96893"/>
            <exon e_start="96989" e_stop="97116"/>
            <exon e_start="97764" e_stop="97902"/>
            <exon e_start="98385" e_stop="98446"/>
            <exon e_start="98568" e_stop="98619"/>
            <exon e_start="98711" e_stop="98816"/>
            <exon e_start="99025" e_stop="99123"/>
            <exon e_start="99208" e_stop="99340"/>
            <exon e_start="99439" e_stop="99584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.164" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.071" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.479" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.593" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96690" e_stop="96893" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="96894" i_stop="96988" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96989" e_stop="97116" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97117" i_stop="97763" i_length="647"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97764" e_stop="97902" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.955">
            <gDNA_intron_boundary i_start="97903" i_stop="98384" i_length="482"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98385" e_stop="98446" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.164" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98447" i_stop="98567" i_length="121"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98568" e_stop="98619" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.071" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98620" i_stop="98710" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98711" e_stop="98816" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.479" acc_prob="0.871">
            <gDNA_intron_boundary i_start="98817" i_stop="99024" i_length="208"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="99025" e_stop="99123" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99124" i_stop="99207" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99208" e_stop="99340" e_length="133"/>
          </exon>
          <intron i_serial="8" don_prob="0.593" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99341" i_stop="99438" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="99439" e_stop="99584" e_length="146"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96690" stop="96893"/>
              <exon start="96989" stop="97116"/>
              <exon start="97764" stop="97902"/>
              <exon start="98385" stop="98446"/>
              <exon start="98568" stop="98619"/>
              <exon start="98711" stop="98816"/>
              <exon start="99025" stop="99123"/>
              <exon start="99208" stop="99340"/>
              <exon start="99439" stop="99584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATGAGAATGGGTAGTCTCTTGTTGAAATGATGGAAAGGAGTAGGGCAAAACGTTGTGTGATTGAGATTTCCTCTTCTTCCGAGCAAGAAAATGGTGACGATGAAGGAGGAGGAGAAAGTTCAGAAGAATCAGTACAAATATTAGGATCGGATGACGATTTTGATGCCGCTAGTACATATGATTTTGACGACTCTGCCTCAAG : CGAGAGCAACGGTGATTCCGAAGATGAGGAGGAAGACGAGTCTTCCCCGTCTCAACAACATGGTGATGAGGATATCCAAGAGGAAGGTGAGGAATCGGGTAGCGAAAGAGTGCTTCAGCTTCTCCAAG : GTGGTGGAGAATTGAGGAAGCTAATTGAAGGATTGGGGAAGCTCGCTTTGACGGACTATAAAGCATATTTGCGATCAAATGGATTGAGGTTATCAGGTACAAAAGAAGAATGTATACAGAGGATCATAGAGCACTGGAG : GATTAAAGATGGAAATGGTCAAAGACAATATCCCAGATCATCTTTTACCATAAACTGCACTG : GTGACGTATGTAAAGGAGATGTTGTATTATTTCAACAGAAAGTGTACAAGAA : GTTTGAAAAGATGAGAAGGGGTGGAGAACAATCAGGGAAGAGAACCATTGCTGGTAGGATTGTCAAGGAGAGCTATGGCGCTGCCAAACAGCAGCATACCTTTACG : GTTGAGGTGTTATGGAGCCAAGGGGTTAAACAATTACCTCCACTTTTTCCATTGCTTGTGAAGGGACGAAACCTTTATAAGATGAAGACTTTCAGACAG : AGATGGAGGGATGAAGAGGAAAGACTAGAAGTGCTCGGAGAGAAGCACAAACGTGGAGATGCAGCGAGATTTATTAGAGCAACAAGAAAATCAAAATCAACAAAGCCGACAAAAGCATCCTCTAAAAACAAAG : GTAACAAGCGCCAGAAACTTGATCATCATATGAGGCCAAGCAAAATGATGCAGACAAGCAATGTAAAGAAACATAATCATTCTATTGATGAACGTGGGAAAGCAATGGCAGGAAGTAAAAGAACGAAAAAACATCAGCGAAAGCCT</gDNA_template>
            <first_frame> E  *  E  W  V  V  S  C  *  N  D  G  K  E  *  G  K  T  L  C  D  *  D  F  L  F  F  R  A  R  K  W  *  R  *  R  R  R  R  K  F  R  R  I  S  T  N  I  R  I  G  *  R  F  *  C  R  *  Y  I  *  F  *  R  L  C  L  K  :  R  E  Q  R  *  F  R  R  *  G  G  R  R  V  F  P  V  S  T  T  W  *  *  G  Y  P  R  G  R  *  G  I  G  *  R  K  S  A  S  A  S  P  R :   W  W  R  I  E  E  A  N  *  R  I  G  E  A  R  F  D  G  L  *  S  I  F  A  I  K  W  I  E  V  I  R  Y  K  R  R  M  Y  T  E  D  H  R  A  L  E  :  D  *  R  W  K  W  S  K  T  I  S  Q  I  I  F  Y  H  K  L  H  W :   *  R  M  *  R  R  C  C  I  I  S  T  E  S  V  Q  E  :  V  *  K  D  E  K  G  W  R  T  I  R  E  E  N  H  C  W  *  D  C  Q  G  E  L  W  R  C  Q  T  A  A  Y  L  Y   : G  *  G  V  M  E  P  R  G  *  T  I  T  S  T  F  S  I  A  C  E  G  T  K  P  L  *  D  E  D  F  Q  T   : E  M  E  G  *  R  G  K  T  R  S  A  R  R  E  A  Q  T  W  R  C  S  E  I  Y  *  S  N  K  K  I  K  I  N  K  A  D  K  S  I  L  *  K  Q  R :   *  Q  A  P  E  T  *  S  S  Y  E  A  K  Q  N  D  A  D  K  Q  C  K  E  T  *  S  F  Y  *  *  T  W  E  S  N  G  R  K  *  K  N  E  K  T  S  A  K  A  </first_frame>
            <second_frame>  N  E  N  G  *  S  L  V  E  M  M  E  R  S  R  A  K  R  C  V  I  E  I  S  S  S  S  E  Q  E  N  G  D  D  E  G  G  G  E  S  S  E  E  S  V  Q  I  L  G  S  D  D  D  F  D  A  A  S  T  Y  D  F  D  D  S  A  S  S :   E  S  N  G  D  S  E  D  E  E  E  D  E  S  S  P  S  Q  Q  H  G  D  E  D  I  Q  E  E  G  E  E  S  G  S  E  R  V  L  Q  L  L  Q   : G  G  G  E  L  R  K  L  I  E  G  L  G  K  L  A  L  T  D  Y  K  A  Y  L  R  S  N  G  L  R  L  S  G  T  K  E  E  C  I  Q  R  I  I  E  H  W  R :   I  K  D  G  N  G  Q  R  Q  Y  P  R  S  S  F  T  I  N  C  T   : G  D  V  C  K  G  D  V  V  L  F  Q  Q  K  V  Y  K  K :   F  E  K  M  R  R  G  G  E  Q  S  G  K  R  T  I  A  G  R  I  V  K  E  S  Y  G  A  A  K  Q  Q  H  T  F  T  :  V  E  V  L  W  S  Q  G  V  K  Q  L  P  P  L  F  P  L  L  V  K  G  R  N  L  Y  K  M  K  T  F  R  Q  :  R  W  R  D  E  E  E  R  L  E  V  L  G  E  K  H  K  R  G  D  A  A  R  F  I  R  A  T  R  K  S  K  S  T  K  P  T  K  A  S  S  K  N  K   : G  N  K  R  Q  K  L  D  H  H  M  R  P  S  K  M  M  Q  T  S  N  V  K  K  H  N  H  S  I  D  E  R  G  K  A  M  A  G  S  K  R  T  K  K  H  Q  R  K  P </second_frame>
            <third_frame>   M  R  M  G  S  L  L  L  K  *  W  K  G  V  G  Q  N  V  V  *  L  R  F  P  L  L  P  S  K  K  M  V  T  M  K  E  E  E  K  V  Q  K  N  Q  Y  K  Y  *  D  R  M  T  I  L  M  P  L  V  H  M  I  L  T  T  L  P  Q   : A  R  A  T  V  I  P  K  M  R  R  K  T  S  L  P  R  L  N  N  M  V  M  R  I  S  K  R  K  V  R  N  R  V  A  K  E  C  F  S  F  S  K  :  V  V  E  N  *  G  S  *  L  K  D  W  G  S  S  L  *  R  T  I  K  H  I  C  D  Q  M  D  *  G  Y  Q  V  Q  K  K  N  V  Y  R  G  S  *  S  T  G   : G  L  K  M  E  M  V  K  D  N  I  P  D  H  L  L  P  *  T  A  L  :  V  T  Y  V  K  E  M  L  Y  Y  F  N  R  K  C  T  R   : S  L  K  R  *  E  G  V  E  N  N  Q  G  R  E  P  L  L  V  G  L  S  R  R  A  M  A  L  P  N  S  S  I  P  L  R :   L  R  C  Y  G  A  K  G  L  N  N  Y  L  H  F  F  H  C  L  *  R  D  E  T  F  I  R  *  R  L  S  D  R :   D  G  G  M  K  R  K  D  *  K  C  S  E  R  S  T  N  V  E  M  Q  R  D  L  L  E  Q  Q  E  N  Q  N  Q  Q  S  R  Q  K  H  P  L  K  T  K  :  V  T  S  A  R  N  L  I  I  I  *  G  Q  A  K  *  C  R  Q  A  M  *  R  N  I  I  I  L  L  M  N  V  G  K  Q  W  Q  E  V  K  E  R  K  N  I  S  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96706" stop="96893"/>
                    <exon start="96989" stop="97116"/>
                    <exon start="97764" stop="97902"/>
                    <exon start="98385" stop="98446"/>
                    <exon start="98568" stop="98619"/>
                    <exon start="98711" stop="98816"/>
                    <exon start="99025" stop="99123"/>
                    <exon start="99208" stop="99340"/>
                    <exon start="99439" stop="99584"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLVEMMERSRAKRCVIEISSSSEQENGDDEGGGESSEESVQILGSDDDFDAASTYDFDDSASSESNGDSEDEEEDESSPSQQHGDEDIQEEGEESGSERVLQLLQGGGELRKLIEGLGKLALTDYKAYLRSNGLRLSGTKEECIQRIIEHWRIKDGNGQRQYPRSSFTINCTGDVCKGDVVLFQQKVYKKFEKMRRGGEQSGKRTIAGRIVKESYGAAKQQHTFTVEVLWSQGVKQLPPLFPLLVKGRNLYKMKTFRQRWRDEEERLEVLGEKHKRGDAARFIRATRKSKSTKPTKASSKNKGNKRQKLDHHMRPSKMMQTSNVKKHNHSIDERGKAMAGSKRTKKHQRKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="100176" PGL_stop="99846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100176" e_stop="99846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="100176" e_stop="99846" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100176" stop="99846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATAAAAAAATATCAATTTAAGACGAAACACTTCTGCAAATTTCTGTACATATGTTTGAAATTCGACATTTACTACAAGGCAATGTTCCAAATGTCAGTTTAAGACACCTTGCACTATTTTGTTTATGTAAACCCCTTGCTGCTGCTATGTGCAGAGCACAAGTTTGTGTGTAAGAGAAACAAAAAGCTAAGAGTTCCATCTACGTTCATAGTTTACAAATGGGATTGAGTCAGATGATCTATCAATACCCAACATGCCAGGGGGATGCGGATAATTGTTAGACTGAGATACATACCTAGCGTATGAAGAATTTGGATAACTTCCATG</gDNA_template>
            <first_frame> K  N  K  K  I  S  I  *  D  E  T  L  L  Q  I  S  V  H  M  F  E  I  R  H  L  L  Q  G  N  V  P  N  V  S  L  R  H  L  A  L  F  C  L  C  K  P  L  A  A  A  M  C  R  A  Q  V  C  V  *  E  K  Q  K  A  K  S  S  I  Y  V  H  S  L  Q  M  G  L  S  Q  M  I  Y  Q  Y  P  T  C  Q  G  D  A  D  N  C  *  T  E  I  H  T  *  R  M  K  N  L  D  N  F  H  </first_frame>
            <second_frame>  K  I  K  K  Y  Q  F  K  T  K  H  F  C  K  F  L  Y  I  C  L  K  F  D  I  Y  Y  K  A  M  F  Q  M  S  V  *  D  T  L  H  Y  F  V  Y  V  N  P  L  L  L  L  C  A  E  H  K  F  V  C  K  R  N  K  K  L  R  V  P  S  T  F  I  V  Y  K  W  D  *  V  R  *  S  I  N  T  Q  H  A  R  G  M  R  I  I  V  R  L  R  Y  I  P  S  V  *  R  I  W  I  T  S  M </second_frame>
            <third_frame>   K  *  K  N  I  N  L  R  R  N  T  S  A  N  F  C  T  Y  V  *  N  S  T  F  T  T  R  Q  C  S  K  C  Q  F  K  T  P  C  T  I  L  F  M  *  T  P  C  C  C  Y  V  Q  S  T  S  L  C  V  R  E  T  K  S  *  E  F  H  L  R  S  *  F  T  N  G  I  E  S  D  D  L  S  I  P  N  M  P  G  G  C  G  *  L  L  D  *  D  T  Y  L  A  Y  E  E  F  G  *  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="110600" PGL_stop="120049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110600" e_stop="110693"/>
            <exon e_start="119061" e_stop="119166"/>
            <exon e_start="119363" e_stop="120049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.934" e_score="0.915"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="0.925"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="110600" e_stop="110693" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.934">
            <gDNA_intron_boundary i_start="110694" i_stop="119060" i_length="8367"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="119061" e_stop="119166" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="119167" i_stop="119362" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="119363" e_stop="120049" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110600" stop="110693"/>
              <exon start="119061" stop="119166"/>
              <exon start="119363" stop="120049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAAGAAAAGTCTCTTCCAATGGATTGTCAATTTCTCCTCAACAAGTGCTTTGTCTAATACATTACACCAAGTTTGAGAAAAACAAGATCCAG : CGGATGAAAATACAACAAAAAAAGAGGCAGCGCTGGATTGTCAATTTCTCCTCAACAATAGCTCTCTCTAATACATTAGAGCAAGTTGAAGAAAATATACATCAAG : TTAAAAGTGGAAGGAAGAACGAGAGAACAAAGAACAGACCTTTTTTTAAATCTCCATCTGTTAGACTCGTAAATTACTTGATCTAATTACGTACAAACATGTCAAGGACTTGGGCATTGGTCTTGACATGAATGAGGGCAAAACAGTGCAACACAGGTTCAAGGTGTTTGGGTGTTGGCAAGGCAACTTGAACATGCAAGGCTTAAGTGCGGGCTAGAGTCATCGGCAAGGCAGCGTGTTGGCTTGACAAGGCAAAACTGTGAAGACTTGACGATGGTAAGAACAAAGGCATTCCACGTAAATTGCTGAAATAAAACCAAGTGTTGGAGGACAACTAAAATATTCTAAGTGTTGGAAGCTGGCTGAAATAATCTAAGTGTTGGAATGTAGCCTGAAATATTCTAAGTGTTAAAATATTAATATTTCGTGTGGATAAGGATGTAATTTAAATTAGAGTCTATCTGTTAGAAATATATCTGTTGGAAACTTAGTTTGAATCTTGTGATGACAAGTGTCGGACATGTGTCATTTGTAACTGCCGCATGTAACTGCCATGTGCAGAAATTTTAATAAGGGTGGAAATTTTGTTTAAGGCTTAGAGGAGTGTGTTTTCTGGCCTTAGACAAATTCGTGAAGCCTTCCCTTTGTATTAATTATCAGATTAATAAAGGTTGGACGAGTTCCTTT</gDNA_template>
            <first_frame> L  K  K  S  L  F  Q  W  I  V  N  F  S  S  T  S  A  L  S  N  T  L  H  Q  V  *  E  K  Q  D  P   : A  D  E  N  T  T  K  K  E  A  A  L  D  C  Q  F  L  L  N  N  S  S  L  *  Y  I  R  A  S  *  R  K  Y  T  S  S :   *  K  W  K  E  E  R  E  N  K  E  Q  T  F  F  *  I  S  I  C  *  T  R  K  L  L  D  L  I  T  Y  K  H  V  K  D  L  G  I  G  L  D  M  N  E  G  K  T  V  Q  H  R  F  K  V  F  G  C  W  Q  G  N  L  N  M  Q  G  L  S  A  G  *  S  H  R  Q  G  S  V  L  A  *  Q  G  K  T  V  K  T  *  R  W  *  E  Q  R  H  S  T  *  I  A  E  I  K  P  S  V  G  G  Q  L  K  Y  S  K  C  W  K  L  A  E  I  I  *  V  L  E  C  S  L  K  Y  S  K  C  *  N  I  N  I  S  C  G  *  G  C  N  L  N  *  S  L  S  V  R  N  I  S  V  G  N  L  V  *  I  L  *  *  Q  V  S  D  M  C  H  L  *  L  P  H  V  T  A  M  C  R  N  F  N  K  G  G  N  F  V  *  G  L  E  E  C  V  F  W  P  *  T  N  S  *  S  L  P  F  V  L  I  I  R  L  I  K  V  G  R  V  P   </first_frame>
            <second_frame>  *  R  K  V  S  S  N  G  L  S  I  S  P  Q  Q  V  L  C  L  I  H  Y  T  K  F  E  K  N  K  I  Q  :  R  M  K  I  Q  Q  K  K  R  Q  R  W  I  V  N  F  S  S  T  I  A  L  S  N  T  L  E  Q  V  E  E  N  I  H  Q   : V  K  S  G  R  K  N  E  R  T  K  N  R  P  F  F  K  S  P  S  V  R  L  V  N  Y  L  I  *  L  R  T  N  M  S  R  T  W  A  L  V  L  T  *  M  R  A  K  Q  C  N  T  G  S  R  C  L  G  V  G  K  A  T  *  T  C  K  A  *  V  R  A  R  V  I  G  K  A  A  C  W  L  D  K  A  K  L  *  R  L  D  D  G  K  N  K  G  I  P  R  K  L  L  K  *  N  Q  V  L  E  D  N  *  N  I  L  S  V  G  S  W  L  K  *  S  K  C  W  N  V  A  *  N  I  L  S  V  K  I  L  I  F  R  V  D  K  D  V  I  *  I  R  V  Y  L  L  E  I  Y  L  L  E  T  *  F  E  S  C  D  D  K  C  R  T  C  V  I  C  N  C  R  M  *  L  P  C  A  E  I  L  I  R  V  E  I  L  F  K  A  *  R  S  V  F  S  G  L  R  Q  I  R  E  A  F  P  L  Y  *  L  S  D  *  *  R  L  D  E  F  L  </second_frame>
            <third_frame>   E  E  K  S  L  P  M  D  C  Q  F  L  L  N  K  C  F  V  *  Y  I  T  P  S  L  R  K  T  R  S  S :   G  *  K  Y  N  K  K  R  G  S  A  G  L  S  I  S  P  Q  Q  *  L  S  L  I  H  *  S  K  L  K  K  I  Y  I  K  :  L  K  V  E  G  R  T  R  E  Q  R  T  D  L  F  L  N  L  H  L  L  D  S  *  I  T  *  S  N  Y  V  Q  T  C  Q  G  L  G  H  W  S  *  H  E  *  G  Q  N  S  A  T  Q  V  Q  G  V  W  V  L  A  R  Q  L  E  H  A  R  L  K  C  G  L  E  S  S  A  R  Q  R  V  G  L  T  R  Q  N  C  E  D  L  T  M  V  R  T  K  A  F  H  V  N  C  *  N  K  T  K  C  W  R  T  T  K  I  F  *  V  L  E  A  G  *  N  N  L  S  V  G  M  *  P  E  I  F  *  V  L  K  Y  *  Y  F  V  W  I  R  M  *  F  K  L  E  S  I  C  *  K  Y  I  C  W  K  L  S  L  N  L  V  M  T  S  V  G  H  V  S  F  V  T  A  A  C  N  C  H  V  Q  K  F  *  *  G  W  K  F  C  L  R  L  R  G  V  C  F  L  A  L  D  K  F  V  K  P  S  L  C  I  N  Y  Q  I  N  K  G  W  T  S  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110604" stop="110693"/>
                    <exon start="119061" stop="119166"/>
                    <exon start="119363" stop="119448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKVSSNGLSISPQQVLCLIHYTKFEKNKIQRMKIQQKKRQRWIVNFSSTIALSNTLEQVEENIHQVKSGRKNERTKNRPFFKSPSVRLVNYLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="132571" PGL_stop="131352"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132571" e_stop="131352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="132571" e_stop="131352" e_length="1220"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132571" stop="131352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGACTAACTGGCCTGAAACTATAACTTATGTGATTAACAGCATCAAGGGAGGAAGAATTGTTTGTGAGAATCTGAGGCAGTTCATCCAAGTTGAGGTAATCTTGGCAATCAGTAGCTTATCAATAAACTTCATACTGGTTATAGTAGACGGAGATGCCCCGTTAACAATATTTCAGTTGGTATGGGTTAACCTTCTTGTTACATTTATTGGAGGGCCAGCTTTGCTAATTACTCTACTAAGGGATGAGCTTTCTATCAGACCAAGAAAACCGCCAATTACCAAAGCTATGTGGAGAAACATACTTTTTCAAGCTTCTTATCAGACTGGCATTTTTGTATTCCTTCAACTCAAAGGAAGTGCAATACTGGGCATCACTCCAAAAGTTAACAGATCTATAGTCTTTAACGGGTTCGCTCTGTGCCAGCTTTTTAACATTTTCAGTGCAAGGGATTTGGAGCAGAAGAATTTTTTCAAAGGTTTTGGTCAAAATTACTTGTTCTGGGCATTGTCTGTGCTCTATCTTGTGTTGCAGTTTGGATTCATTGAAGTAGAGGCTGTCTTTGTCTTTACCAACACGGCACGACTGAATTGGAAGCAATGGGTTGAATCCATTTTAATTGGAGCTGCTACATGGTTGGTTGATGTGATAGTAAAATGGGCATCACAATACATAAAGATAGACAAATATTGTGATTGTGGAGGTCTTTACCTAGCTAGAAACTGGTTACAGTATTGGTTTATCAGGATCAATTGCTGTTACTGTGGACAAAGAAGTACACCAAATCCAACTCTTGCTTCCTTGGATTATTCGAGATCCACTAGCGGAAAGGTAATTCAAAAAATTTATCCATACTGCCTAATTACAGTTACAGTTCTTCCCTAAAATTTTGGATTCAAGTTGTAGCTGTTGTTCTTTTGCAGGGCTGGATAACAAATATCACACGTCGTGTTAAACCAACGAAGCATAGAGCTAATACTTGTTGCAGTCGCTTCAATTTTTAGTAGATAGTTTCCTCTGTTCTCTATAGACGGTTAGATACAGTTGGAGCAACACTAAAGTTATCTCGATGTGACCCATAGCTTATGGGTAAATCAGCTGACCCGTAGATTATGGGTTAGAGCAGTACTAAAATCAGCCTTGTATCAGGGTACACACCCTTGAAGGGTGTCCTTTATAGTTAGTTTGTGTTAATTAATTTCATCAAGTTTTTCGGTTC</gDNA_template>
            <first_frame> G  D  *  L  A  *  N  Y  N  L  C  D  *  Q  H  Q  G  R  K  N  C  L  *  E  S  E  A  V  H  P  S  *  G  N  L  G  N  Q  *  L  I  N  K  L  H  T  G  Y  S  R  R  R  C  P  V  N  N  I  S  V  G  M  G  *  P  S  C  Y  I  Y  W  R  A  S  F  A  N  Y  S  T  K  G  *  A  F  Y  Q  T  K  K  T  A  N  Y  Q  S  Y  V  E  K  H  T  F  S  S  F  L  S  D  W  H  F  C  I  P  S  T  Q  R  K  C  N  T  G  H  H  S  K  S  *  Q  I  Y  S  L  *  R  V  R  S  V  P  A  F  *  H  F  Q  C  K  G  F  G  A  E  E  F  F  Q  R  F  W  S  K  L  L  V  L  G  I  V  C  A  L  S  C  V  A  V  W  I  H  *  S  R  G  C  L  C  L  Y  Q  H  G  T  T  E  L  E  A  M  G  *  I  H  F  N  W  S  C  Y  M  V  G  *  C  D  S  K  M  G  I  T  I  H  K  D  R  Q  I  L  *  L  W  R  S  L  P  S  *  K  L  V  T  V  L  V  Y  Q  D  Q  L  L  L  L  W  T  K  K  Y  T  K  S  N  S  C  F  L  G  L  F  E  I  H  *  R  K  G  N  S  K  N  L  S  I  L  P  N  Y  S  Y  S  S  S  L  K  F  W  I  Q  V  V  A  V  V  L  L  Q  G  W  I  T  N  I  T  R  R  V  K  P  T  K  H  R  A  N  T  C  C  S  R  F  N  F  *  *  I  V  S  S  V  L  Y  R  R  L  D  T  V  G  A  T  L  K  L  S  R  C  D  P  *  L  M  G  K  S  A  D  P  *  I  M  G  *  S  S  T  K  I  S  L  V  S  G  Y  T  P  L  K  G  V  L  Y  S  *  F  V  L  I  N  F  I  K  F  F  G   </first_frame>
            <second_frame>  V  T  N  W  P  E  T  I  T  Y  V  I  N  S  I  K  G  G  R  I  V  C  E  N  L  R  Q  F  I  Q  V  E  V  I  L  A  I  S  S  L  S  I  N  F  I  L  V  I  V  D  G  D  A  P  L  T  I  F  Q  L  V  W  V  N  L  L  V  T  F  I  G  G  P  A  L  L  I  T  L  L  R  D  E  L  S  I  R  P  R  K  P  P  I  T  K  A  M  W  R  N  I  L  F  Q  A  S  Y  Q  T  G  I  F  V  F  L  Q  L  K  G  S  A  I  L  G  I  T  P  K  V  N  R  S  I  V  F  N  G  F  A  L  C  Q  L  F  N  I  F  S  A  R  D  L  E  Q  K  N  F  F  K  G  F  G  Q  N  Y  L  F  W  A  L  S  V  L  Y  L  V  L  Q  F  G  F  I  E  V  E  A  V  F  V  F  T  N  T  A  R  L  N  W  K  Q  W  V  E  S  I  L  I  G  A  A  T  W  L  V  D  V  I  V  K  W  A  S  Q  Y  I  K  I  D  K  Y  C  D  C  G  G  L  Y  L  A  R  N  W  L  Q  Y  W  F  I  R  I  N  C  C  Y  C  G  Q  R  S  T  P  N  P  T  L  A  S  L  D  Y  S  R  S  T  S  G  K  V  I  Q  K  I  Y  P  Y  C  L  I  T  V  T  V  L  P  *  N  F  G  F  K  L  *  L  L  F  F  C  R  A  G  *  Q  I  S  H  V  V  L  N  Q  R  S  I  E  L  I  L  V  A  V  A  S  I  F  S  R  *  F  P  L  F  S  I  D  G  *  I  Q  L  E  Q  H  *  S  Y  L  D  V  T  H  S  L  W  V  N  Q  L  T  R  R  L  W  V  R  A  V  L  K  S  A  L  Y  Q  G  T  H  P  *  R  V  S  F  I  V  S  L  C  *  L  I  S  S  S  F  S  V  </second_frame>
            <third_frame>   *  L  T  G  L  K  L  *  L  M  *  L  T  A  S  R  E  E  E  L  F  V  R  I  *  G  S  S  S  K  L  R  *  S  W  Q  S  V  A  Y  Q  *  T  S  Y  W  L  *  *  T  E  M  P  R  *  Q  Y  F  S  W  Y  G  L  T  F  L  L  H  L  L  E  G  Q  L  C  *  L  L  Y  *  G  M  S  F  L  S  D  Q  E  N  R  Q  L  P  K  L  C  G  E  T  Y  F  F  K  L  L  I  R  L  A  F  L  Y  S  F  N  S  K  E  V  Q  Y  W  A  S  L  Q  K  L  T  D  L  *  S  L  T  G  S  L  C  A  S  F  L  T  F  S  V  Q  G  I  W  S  R  R  I  F  S  K  V  L  V  K  I  T  C  S  G  H  C  L  C  S  I  L  C  C  S  L  D  S  L  K  *  R  L  S  L  S  L  P  T  R  H  D  *  I  G  S  N  G  L  N  P  F  *  L  E  L  L  H  G  W  L  M  *  *  *  N  G  H  H  N  T  *  R  *  T  N  I  V  I  V  E  V  F  T  *  L  E  T  G  Y  S  I  G  L  S  G  S  I  A  V  T  V  D  K  E  V  H  Q  I  Q  L  L  L  P  W  I  I  R  D  P  L  A  E  R  *  F  K  K  F  I  H  T  A  *  L  Q  L  Q  F  F  P  K  I  L  D  S  S  C  S  C  C  S  F  A  G  L  D  N  K  Y  H  T  S  C  *  T  N  E  A  *  S  *  Y  L  L  Q  S  L  Q  F  L  V  D  S  F  L  C  S  L  *  T  V  R  Y  S  W  S  N  T  K  V  I  S  M  *  P  I  A  Y  G  *  I  S  *  P  V  D  Y  G  L  E  Q  Y  *  N  Q  P  C  I  R  V  H  T  L  E  G  C  P  L  *  L  V  C  V  N  *  F  H  Q  V  F  R  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132570" stop="131686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTNWPETITYVINSIKGGRIVCENLRQFIQVEVILAISSLSINFILVIVDGDAPLTIFQLVWVNLLVTFIGGPALLITLLRDELSIRPRKPPITKAMWRNILFQASYQTGIFVFLQLKGSAILGITPKVNRSIVFNGFALCQLFNIFSARDLEQKNFFKGFGQNYLFWALSVLYLVLQFGFIEVEAVFVFTNTARLNWKQWVESILIGAATWLVDVIVKWASQYIKIDKYCDCGGLYLARNWLQYWFIRINCCYCGQRSTPNPTLASLDYSRSTSGKVIQKIYPYCLITVTVLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="134137" PGL_stop="134805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134137" e_stop="134805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="134137" e_stop="134805" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134137" stop="134805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCCCCTTGACTCCTTCAAAATTGTGAAGTGATTCCAACTTCACATTCTCTTCACTAATTTGTAGGCATTGTTGATGAGTACTTAGATCATGAGGCTGAAGCTCAATCTCATTGTTTGATTGTACAGTATAAACATCAGCCACAGTTTCAACCATCTGGAATTCATCTCCACCACCTTCCGCGTCCTAATTAGACAGAGAGCATATATAATTAATATCATCAATATATAACTTTAAACTATATGCATATATATATGTTTTATATATACATACTCCATGTTTAAGATTGAAGCTGGGAAGAGGAGTATAAAAGGTTGTGGTGGAGGATGATGAGACTCGTGAAAGAGATGCTATTCTTGCTCCAGCTTCAATGAACTTGTAAGTAGATTTGAAAATGAGCGCCGACTTCCTCATGATCAAACTAGATTTACCCAATTCTCCATTCATCAACAGCGGGGAACTTCGCTGAGCTTCAATGTCTGATCCATTATCTTCATGATCCAGCTCCATCATCTTCGCCTTTGATCAGTACATTTTTCTTCTTCTTCTGTATTTATTATAAAATACTAGGAAAGATCACTATGATCTGACACTTAAAAGATTCAGATAGAATAAGATATGATGGTAAGGAACTGATTTTTTTGTATACATATTTATAGGGAAAGAAAA</gDNA_template>
            <first_frame> T  P  L  D  S  F  K  I  V  K  *  F  Q  L  H  I  L  F  T  N  L  *  A  L  L  M  S  T  *  I  M  R  L  K  L  N  L  I  V  *  L  Y  S  I  N  I  S  H  S  F  N  H  L  E  F  I  S  T  T  F  R  V  L  I  R  Q  R  A  Y  I  I  N  I  I  N  I  *  L  *  T  I  C  I  Y  I  C  F  I  Y  T  Y  S  M  F  K  I  E  A  G  K  R  S  I  K  G  C  G  G  G  *  *  D  S  *  K  R  C  Y  S  C  S  S  F  N  E  L  V  S  R  F  E  N  E  R  R  L  P  H  D  Q  T  R  F  T  Q  F  S  I  H  Q  Q  R  G  T  S  L  S  F  N  V  *  S  I  I  F  M  I  Q  L  H  H  L  R  L  *  S  V  H  F  S  S  S  S  V  F  I  I  K  Y  *  E  R  S  L  *  S  D  T  *  K  I  Q  I  E  *  D  M  M  V  R  N  *  F  F  C  I  H  I  Y  R  E  R  K </first_frame>
            <second_frame>  L  P  L  T  P  S  K  L  *  S  D  S  N  F  T  F  S  S  L  I  C  R  H  C  *  *  V  L  R  S  *  G  *  S  S  I  S  L  F  D  C  T  V  *  T  S  A  T  V  S  T  I  W  N  S  S  P  P  P  S  A  S  *  L  D  R  E  H  I  *  L  I  S  S  I  Y  N  F  K  L  Y  A  Y  I  Y  V  L  Y  I  H  T  P  C  L  R  L  K  L  G  R  G  V  *  K  V  V  V  E  D  D  E  T  R  E  R  D  A  I  L  A  P  A  S  M  N  L  *  V  D  L  K  M  S  A  D  F  L  M  I  K  L  D  L  P  N  S  P  F  I  N  S  G  E  L  R  *  A  S  M  S  D  P  L  S  S  *  S  S  S  I  I  F  A  F  D  Q  Y  I  F  L  L  L  L  Y  L  L  *  N  T  R  K  D  H  Y  D  L  T  L  K  R  F  R  *  N  K  I  *  W  *  G  T  D  F  F  V  Y  I  F  I  G  K  E   </second_frame>
            <third_frame>   S  P  *  L  L  Q  N  C  E  V  I  P  T  S  H  S  L  H  *  F  V  G  I  V  D  E  Y  L  D  H  E  A  E  A  Q  S  H  C  L  I  V  Q  Y  K  H  Q  P  Q  F  Q  P  S  G  I  H  L  H  H  L  P  R  P  N  *  T  E  S  I  Y  N  *  Y  H  Q  Y  I  T  L  N  Y  M  H  I  Y  M  F  Y  I  Y  I  L  H  V  *  D  *  S  W  E  E  E  Y  K  R  L  W  W  R  M  M  R  L  V  K  E  M  L  F  L  L  Q  L  Q  *  T  C  K  *  I  *  K  *  A  P  T  S  S  *  S  N  *  I  Y  P  I  L  H  S  S  T  A  G  N  F  A  E  L  Q  C  L  I  H  Y  L  H  D  P  A  P  S  S  S  P  L  I  S  T  F  F  F  F  F  C  I  Y  Y  K  I  L  G  K  I  T  M  I  *  H  L  K  D  S  D  R  I  R  Y  D  G  K  E  L  I  F  L  Y  T  Y  L  *  G  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0115F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="137949" PGL_stop="141656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137949" e_stop="138282"/>
            <exon e_start="138377" e_stop="138486"/>
            <exon e_start="140081" e_stop="140246"/>
            <exon e_start="141261" e_stop="141361"/>
            <exon e_start="141465" e_stop="141537"/>
            <exon e_start="141636" e_stop="141656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.991" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.685" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.379" acc_prob="0.686" e_score="0.973"/>
          <exon-only e_score="0.762"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="137949" e_stop="138282" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="138283" i_stop="138376" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138377" e_stop="138486" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.950">
            <gDNA_intron_boundary i_start="138487" i_stop="140080" i_length="1594"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="140081" e_stop="140246" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.700" acc_prob="0.892">
            <gDNA_intron_boundary i_start="140247" i_stop="141260" i_length="1014"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="141261" e_stop="141361" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.685" acc_prob="0.965">
            <gDNA_intron_boundary i_start="141362" i_stop="141464" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="141465" e_stop="141537" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.379" acc_prob="0.686">
            <gDNA_intron_boundary i_start="141538" i_stop="141635" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.762">
            <gDNA_exon_boundary e_start="141636" e_stop="141656" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137949" stop="138282"/>
              <exon start="138377" stop="138486"/>
              <exon start="140081" stop="140246"/>
              <exon start="141261" stop="141361"/>
              <exon start="141465" stop="141537"/>
              <exon start="141636" stop="141656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCGCATCAGATTATTCCTCTCTTCAACCCCTTTTCTGTAGATTAATTAATATCAAAGACTAAATTTCATCATCAAAGCTTTTCAGGATCTGATCTGAAAATTTTGATCCGTTCATTTTCATGATCTGGATCTGAGACCTCACTTCATCGTTGTGTTCTTAGTTGAAATTGGTCTAGGTTAGTTAAATTAGGGTGGATCAATGGAGTGGGCGACTCTACAGCATTTAGATCTCCGCCATGTTGGTCGGAGTTCGAAGTCGTTACAGCCTCACGCCGCCGCATTTCATCCCACTCAAGCGCTTCTCGCTGTTGCCGTGGGAAGCCAAATAATTG : AATTTGATGCATATACCGGAAGCAAGATTGCTTCCATAGACATTGGTTCCCCTGTTGTTCGAATGGCTTATAGTCCAACAAGTGGACATTGTGTAATTGCTATTCTTGAG : GATTGTACAATGCGTTCGTGTGATTTTGATGCAGAGCAAACATGTGTTTTACATTCACCTGAGAAAAGGACCGAACGCATTTCTTCTGATACTGAAGTTCACCTTGCATTGACTCCTCTTCAACCTGTTGTATTTTTTGGTTTCCATCGTAGGATGAGTGTTACAG : TTGTTGGAACTGTGGAAGGTGGGAAGGCGCCAACAAAAATAAAGACTGACCTGAAGAAACCTATCGTTAATCTTGCTTGCCATCCTCGACTACCAGTTCTG : TATGTAGCTTACGCGGAAGGGTTGATTCGAGCTTATAACATCCATACATATGCTGTACACTACACTTTACAAT : TGGATAATACTATCAAGCTGG</gDNA_template>
            <first_frame> S  R  I  R  L  F  L  S  S  T  P  F  L  *  I  N  *  Y  Q  R  L  N  F  I  I  K  A  F  Q  D  L  I  *  K  F  *  S  V  H  F  H  D  L  D  L  R  P  H  F  I  V  V  F  L  V  E  I  G  L  G  *  L  N  *  G  G  S  M  E  W  A  T  L  Q  H  L  D  L  R  H  V  G  R  S  S  K  S  L  Q  P  H  A  A  A  F  H  P  T  Q  A  L  L  A  V  A  V  G  S  Q  I  I   : E  F  D  A  Y  T  G  S  K  I  A  S  I  D  I  G  S  P  V  V  R  M  A  Y  S  P  T  S  G  H  C  V  I  A  I  L  E  :  D  C  T  M  R  S  C  D  F  D  A  E  Q  T  C  V  L  H  S  P  E  K  R  T  E  R  I  S  S  D  T  E  V  H  L  A  L  T  P  L  Q  P  V  V  F  F  G  F  H  R  R  M  S  V  T   : V  V  G  T  V  E  G  G  K  A  P  T  K  I  K  T  D  L  K  K  P  I  V  N  L  A  C  H  P  R  L  P  V  L  :  Y  V  A  Y  A  E  G  L  I  R  A  Y  N  I  H  T  Y  A  V  H  Y  T  L  Q   : L  D  N  T  I  K  L  </first_frame>
            <second_frame>  L  A  S  D  Y  S  S  L  Q  P  L  F  C  R  L  I  N  I  K  D  *  I  S  S  S  K  L  F  R  I  *  S  E  N  F  D  P  F  I  F  M  I  W  I  *  D  L  T  S  S  L  C  S  *  L  K  L  V  *  V  S  *  I  R  V  D  Q  W  S  G  R  L  Y  S  I  *  I  S  A  M  L  V  G  V  R  S  R  Y  S  L  T  P  P  H  F  I  P  L  K  R  F  S  L  L  P  W  E  A  K  *  L  :  N  L  M  H  I  P  E  A  R  L  L  P  *  T  L  V  P  L  L  F  E  W  L  I  V  Q  Q  V  D  I  V  *  L  L  F  L  R :   I  V  Q  C  V  R  V  I  L  M  Q  S  K  H  V  F  Y  I  H  L  R  K  G  P  N  A  F  L  L  I  L  K  F  T  L  H  *  L  L  F  N  L  L  Y  F  L  V  S  I  V  G  *  V  L  Q  :  L  L  E  L  W  K  V  G  R  R  Q  Q  K  *  R  L  T  *  R  N  L  S  L  I  L  L  A  I  L  D  Y  Q  F  C :   M  *  L  T  R  K  G  *  F  E  L  I  T  S  I  H  M  L  Y  T  T  L  Y  N  :  W  I  I  L  S  S  W </second_frame>
            <third_frame>   S  H  Q  I  I  P  L  F  N  P  F  S  V  D  *  L  I  S  K  T  K  F  H  H  Q  S  F  S  G  S  D  L  K  I  L  I  R  S  F  S  *  S  G  S  E  T  S  L  H  R  C  V  L  S  *  N  W  S  R  L  V  K  L  G  W  I  N  G  V  G  D  S  T  A  F  R  S  P  P  C  W  S  E  F  E  V  V  T  A  S  R  R  R  I  S  S  H  S  S  A  S  R  C  C  R  G  K  P  N  N  * :   I  *  C  I  Y  R  K  Q  D  C  F  H  R  H  W  F  P  C  C  S  N  G  L  *  S  N  K  W  T  L  C  N  C  Y  S  *   : G  L  Y  N  A  F  V  *  F  *  C  R  A  N  M  C  F  T  F  T  *  E  K  D  R  T  H  F  F  *  Y  *  S  S  P  C  I  D  S  S  S  T  C  C  I  F  W  F  P  S  *  D  E  C  Y  S :   C  W  N  C  G  R  W  E  G  A  N  K  N  K  D  *  P  E  E  T  Y  R  *  S  C  L  P  S  S  T  T  S  S   : V  C  S  L  R  G  R  V  D  S  S  L  *  H  P  Y  I  C  C  T  L  H  F  T  I :   G  *  Y  Y  Q  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138141" stop="138282"/>
                    <exon start="138377" stop="138486"/>
                    <exon start="140081" stop="140246"/>
                    <exon start="141261" stop="141361"/>
                    <exon start="141465" stop="141537"/>
                    <exon start="141636" stop="141655"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSMEWATLQHLDLRHVGRSSKSLQPHAAAFHPTQALLAVAVGSQIIEFDAYTGSKIASIDIGSPVVRMAYSPTSGHCVIAILEDCTMRSCDFDAEQTCVLHSPEKRTERISSDTEVHLALTPLQPVVFFGFHRRMSVTVVGTVEGGKAPTKIKTDLKKPIVNLACHPRLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="143563" PGL_stop="149292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143563" e_stop="143687"/>
            <exon e_start="143761" e_stop="143860"/>
            <exon e_start="145885" e_stop="145981"/>
            <exon e_start="147071" e_stop="147122"/>
            <exon e_start="149091" e_stop="149192"/>
            <exon e_start="149274" e_stop="149292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.043" acc_prob="0.990" e_score="0.952"/>
          <exon-intron don_prob="0.980" acc_prob="0.939" e_score="0.980"/>
          <exon-intron don_prob="0.989" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.847" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="143563" e_stop="143687" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.043" acc_prob="0.990">
            <gDNA_intron_boundary i_start="143688" i_stop="143760" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="143761" e_stop="143860" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.939">
            <gDNA_intron_boundary i_start="143861" i_stop="145884" i_length="2024"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="145885" e_stop="145981" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.774">
            <gDNA_intron_boundary i_start="145982" i_stop="147070" i_length="1089"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="147071" e_stop="147122" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.934">
            <gDNA_intron_boundary i_start="147123" i_stop="149090" i_length="1968"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="149091" e_stop="149192" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.847">
            <gDNA_intron_boundary i_start="149193" i_stop="149273" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="149274" e_stop="149292" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143563" stop="143687"/>
              <exon start="143761" stop="143860"/>
              <exon start="145885" stop="145981"/>
              <exon start="147071" stop="147122"/>
              <exon start="149091" stop="149192"/>
              <exon start="149274" stop="149292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTGAATCCATTGACATCCCGAGAATTCTATCTCAGCAAGGAGGAGAAGCAGTTTATCCACTTCCTCGAATCAGGGCTTTAGAAGTTCACCCAAAATTAAATCTATCTGCATTGCTTTTTATG : AATTTGACTGGTGCTGACAATAGAAAAAATAGAGCTGCTTTTACTAGGGATGGAAGGAAACAATTATTTGCAGTTTTGCAAGGTGCAAGGGGATCTTCAG : CCTCTGTCTTGAAGGAAAAGCTCTCAGCCCTTGGTTCATCCGGAATATTAGCTGATCATCAACTTAAAGCGCAGCTGCAAGAGCATTATTTGAAAGG : ACAAAGTCAGCTCACAATTTCGGATATAGCGAGAAAGGCTTTTCTTTATAGC : CATTTTATGGAAGGTCATGCAAAAACTGTTCCAATTTCCCGGTTACCTCTCATCACAATTCTGGATACCAAACATTATTTGAGAGATGTCCCAGTTTGTCAG : CCATTTCATCTGGATCTAA</gDNA_template>
            <first_frame> Q  L  N  P  L  T  S  R  E  F  Y  L  S  K  E  E  K  Q  F  I  H  F  L  E  S  G  L  *  K  F  T  Q  N  *  I  Y  L  H  C  F  L  * :   I  *  L  V  L  T  I  E  K  I  E  L  L  L  L  G  M  E  G  N  N  Y  L  Q  F  C  K  V  Q  G  D  L  Q  :  P  L  S  *  R  K  S  S  Q  P  L  V  H  P  E  Y  *  L  I  I  N  L  K  R  S  C  K  S  I  I  *  K   : D  K  V  S  S  Q  F  R  I  *  R  E  R  L  F  F  I  A :   I  L  W  K  V  M  Q  K  L  F  Q  F  P  G  Y  L  S  S  Q  F  W  I  P  N  I  I  *  E  M  S  Q  F  V  S :   H  F  I  W  I  * </first_frame>
            <second_frame>  N  *  I  H  *  H  P  E  N  S  I  S  A  R  R  R  S  S  L  S  T  S  S  N  Q  G  F  R  S  S  P  K  I  K  S  I  C  I  A  F  Y   : E  F  D  W  C  *  Q  *  K  K  *  S  C  F  Y  *  G  W  K  E  T  I  I  C  S  F  A  R  C  K  G  I  F  S :   L  C  L  E  G  K  A  L  S  P  W  F  I  R  N  I  S  *  S  S  T  *  S  A  A  A  R  A  L  F  E  R  :  T  K  S  A  H  N  F  G  Y  S  E  K  G  F  S  L  *   : P  F  Y  G  R  S  C  K  N  C  S  N  F  P  V  T  S  H  H  N  S  G  Y  Q  T  L  F  E  R  C  P  S  L  S   : A  I  S  S  G  S   </second_frame>
            <third_frame>   I  E  S  I  D  I  P  R  I  L  S  Q  Q  G  G  E  A  V  Y  P  L  P  R  I  R  A  L  E  V  H  P  K  L  N  L  S  A  L  L  F  M  :  N  L  T  G  A  D  N  R  K  N  R  A  A  F  T  R  D  G  R  K  Q  L  F  A  V  L  Q  G  A  R  G  S  S   : A  S  V  L  K  E  K  L  S  A  L  G  S  S  G  I  L  A  D  H  Q  L  K  A  Q  L  Q  E  H  Y  L  K  G :   Q  S  Q  L  T  I  S  D  I  A  R  K  A  F  L  Y  S  :  H  F  M  E  G  H  A  K  T  V  P  I  S  R  L  P  L  I  T  I  L  D  T  K  H  Y  L  R  D  V  P  V  C  Q  :  P  F  H  L  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0115F06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143565" stop="143687"/>
                    <exon start="143761" stop="143860"/>
                    <exon start="145885" stop="145981"/>
                    <exon start="147071" stop="147122"/>
                    <exon start="149091" stop="149192"/>
                    <exon start="149274" stop="149291"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IESIDIPRILSQQGGEAVYPLPRIRALEVHPKLNLSALLFMNLTGADNRKNRAAFTRDGRKQLFAVLQGARGSSASVLKEKLSALGSSGILADHQLKAQLQEHYLKGQSQLTISDIARKAFLYSHFMEGHAKTVPISRLPLITILDTKHYLRDVPVCQPFHLDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 52 chains have been computed
$ 
$ memory statistics:
$ 46448 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 2111 bytes was the average size of a spliced alignment
$ 27208 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1511 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 58 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:08:54
-->
